Multiple sequence alignment - TraesCS5A01G278100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G278100 chr5A 100.000 8188 0 0 1 8188 487837804 487845991 0.000000e+00 15121.0
1 TraesCS5A01G278100 chr5A 96.591 264 9 0 4892 5155 10553771 10553508 9.760000e-119 438.0
2 TraesCS5A01G278100 chr5A 95.572 271 11 1 4883 5153 404560860 404561129 4.540000e-117 433.0
3 TraesCS5A01G278100 chr5B 95.477 4378 110 35 598 4893 463845143 463849514 0.000000e+00 6907.0
4 TraesCS5A01G278100 chr5B 97.251 2619 49 10 5150 7753 463849512 463852122 0.000000e+00 4416.0
5 TraesCS5A01G278100 chr5B 88.057 494 51 6 1 489 463844515 463845005 5.510000e-161 579.0
6 TraesCS5A01G278100 chr5B 83.333 258 43 0 5165 5422 589237391 589237134 1.060000e-58 239.0
7 TraesCS5A01G278100 chr5D 97.368 3838 67 8 622 4428 385942607 385946441 0.000000e+00 6497.0
8 TraesCS5A01G278100 chr5D 97.578 2601 51 6 5153 7751 385946717 385949307 0.000000e+00 4444.0
9 TraesCS5A01G278100 chr5D 87.680 487 45 8 10 492 385941196 385941671 3.340000e-153 553.0
10 TraesCS5A01G278100 chr5D 98.958 288 3 0 4571 4858 385946436 385946723 4.380000e-142 516.0
11 TraesCS5A01G278100 chr5D 90.377 239 21 1 7933 8171 385950372 385950608 6.170000e-81 313.0
12 TraesCS5A01G278100 chr5D 86.029 136 13 4 491 623 385942226 385942358 3.080000e-29 141.0
13 TraesCS5A01G278100 chr5D 89.873 79 7 1 415 492 385942103 385942181 5.230000e-17 100.0
14 TraesCS5A01G278100 chr5D 92.857 70 3 2 7866 7933 385949384 385949453 5.230000e-17 100.0
15 TraesCS5A01G278100 chr7D 76.331 1183 254 21 2039 3215 230654464 230655626 1.950000e-170 610.0
16 TraesCS5A01G278100 chr7D 74.634 615 127 18 5785 6374 230658696 230659306 2.280000e-60 244.0
17 TraesCS5A01G278100 chr7A 76.431 1188 244 29 2039 3215 243503263 243504425 1.950000e-170 610.0
18 TraesCS5A01G278100 chr7A 99.617 261 1 0 4892 5152 92768518 92768258 2.070000e-130 477.0
19 TraesCS5A01G278100 chr7A 96.591 264 9 0 4890 5153 706650671 706650934 9.760000e-119 438.0
20 TraesCS5A01G278100 chr7A 74.388 613 128 18 5785 6372 243507523 243508131 1.370000e-57 235.0
21 TraesCS5A01G278100 chr7B 99.245 265 2 0 4890 5154 158072620 158072884 5.750000e-131 479.0
22 TraesCS5A01G278100 chr7B 75.365 617 119 21 5785 6374 202110300 202110910 4.870000e-67 267.0
23 TraesCS5A01G278100 chr6A 99.618 262 1 0 4891 5152 596891831 596891570 5.750000e-131 479.0
24 TraesCS5A01G278100 chr6B 99.237 262 2 0 4892 5153 2044108 2044369 2.670000e-129 473.0
25 TraesCS5A01G278100 chr2B 96.604 265 9 0 4891 5155 150597011 150596747 2.710000e-119 440.0
26 TraesCS5A01G278100 chr4A 95.588 272 12 0 4881 5152 677437699 677437428 3.510000e-118 436.0
27 TraesCS5A01G278100 chr3D 84.586 266 32 7 7146 7408 508165981 508165722 1.050000e-63 255.0
28 TraesCS5A01G278100 chr6D 96.875 32 1 0 8018 8049 27088251 27088282 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G278100 chr5A 487837804 487845991 8187 False 15121.000000 15121 100.0000 1 8188 1 chr5A.!!$F2 8187
1 TraesCS5A01G278100 chr5B 463844515 463852122 7607 False 3967.333333 6907 93.5950 1 7753 3 chr5B.!!$F1 7752
2 TraesCS5A01G278100 chr5D 385941196 385950608 9412 False 1583.000000 6497 92.5900 10 8171 8 chr5D.!!$F1 8161
3 TraesCS5A01G278100 chr7D 230654464 230659306 4842 False 427.000000 610 75.4825 2039 6374 2 chr7D.!!$F1 4335
4 TraesCS5A01G278100 chr7A 243503263 243508131 4868 False 422.500000 610 75.4095 2039 6372 2 chr7A.!!$F2 4333
5 TraesCS5A01G278100 chr7B 202110300 202110910 610 False 267.000000 267 75.3650 5785 6374 1 chr7B.!!$F2 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 420 0.244994 CAGACCGAAGACCTGAGGTG 59.755 60.000 9.89 0.00 35.25 4.00 F
418 425 2.526873 AAGACCTGAGGTGCCCGT 60.527 61.111 9.89 0.00 35.25 5.28 F
1929 2785 1.227764 CTCCATGGCCATCACCTCG 60.228 63.158 17.61 2.97 0.00 4.63 F
2469 3365 0.108019 TGAGTCGGCTCGGCTAGATA 59.892 55.000 13.21 0.00 43.67 1.98 F
3991 5633 4.733165 CCAATGGTCAATGGTGGATAGAT 58.267 43.478 0.00 0.00 31.84 1.98 F
4918 6801 1.137282 TCCGTTCCATAATGTAGCGCA 59.863 47.619 11.47 0.00 0.00 6.09 F
5144 7027 1.070914 TGCACTACATTGTGGAACCGA 59.929 47.619 7.20 0.00 35.42 4.69 F
6673 8614 1.197721 GCGGAAGTTTGACTGACCATG 59.802 52.381 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2785 0.749091 TGGCATGCTGCTCACCATAC 60.749 55.000 18.92 0.00 44.28 2.39 R
2015 2884 2.003301 GATTCAAACAGCGAGAGGGAC 58.997 52.381 0.00 0.00 0.00 4.46 R
3721 5105 4.333372 GTGTCCAAGAAAAACCGTAGTTGA 59.667 41.667 0.00 0.00 35.97 3.18 R
4345 5990 6.422344 TGGTAGTTGTACATAAGGACACAA 57.578 37.500 0.00 0.00 0.00 3.33 R
5130 7013 0.324943 CTCCCTCGGTTCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71 R
6674 8615 0.610687 AACTACTGTCTGCCCTCTGC 59.389 55.000 0.00 0.00 41.77 4.26 R
7028 8969 0.963962 GAGTTAGTGTCACCGGTGGA 59.036 55.000 33.40 18.27 0.00 4.02 R
8144 11014 0.106419 GGGGAGTGTTGTGGTTGGAA 60.106 55.000 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 38 3.584733 AGAAAACTCAAGACAAGGCCT 57.415 42.857 0.00 0.00 0.00 5.19
92 97 0.831307 ACAAATCTCCTACGCTCCCC 59.169 55.000 0.00 0.00 0.00 4.81
122 127 2.590821 GAGGCTTGCCAACCATCATAT 58.409 47.619 14.54 0.00 0.00 1.78
164 169 5.136828 TGACCAAGATGTACAACCACATTT 58.863 37.500 0.00 0.00 39.25 2.32
198 203 3.489398 GGATAGTGCGATCGAGACAAACT 60.489 47.826 21.57 13.13 0.00 2.66
243 248 1.697432 AGAACCAGATTCGGGACACAA 59.303 47.619 10.00 0.00 42.69 3.33
250 255 3.753272 CAGATTCGGGACACAACATCTTT 59.247 43.478 0.00 0.00 0.00 2.52
304 311 1.330655 GGAATGAGGGCGAGACTGGA 61.331 60.000 0.00 0.00 0.00 3.86
333 340 2.526993 CCACGTTGACGGCGACAAA 61.527 57.895 24.69 7.88 44.95 2.83
334 341 1.348938 CACGTTGACGGCGACAAAA 59.651 52.632 24.69 2.86 44.95 2.44
338 345 1.595976 CGTTGACGGCGACAAAACATT 60.596 47.619 24.69 0.00 35.37 2.71
351 358 0.899717 AAACATTGCCTCACCGCCAT 60.900 50.000 0.00 0.00 0.00 4.40
408 415 0.898320 ACCATCAGACCGAAGACCTG 59.102 55.000 0.00 0.00 0.00 4.00
409 416 1.186200 CCATCAGACCGAAGACCTGA 58.814 55.000 0.00 0.00 40.68 3.86
413 420 0.244994 CAGACCGAAGACCTGAGGTG 59.755 60.000 9.89 0.00 35.25 4.00
418 425 2.526873 AAGACCTGAGGTGCCCGT 60.527 61.111 9.89 0.00 35.25 5.28
436 444 3.691342 CCCTCCCGTCGTTGCAGA 61.691 66.667 0.00 0.00 0.00 4.26
509 1073 5.424573 GGTCTGTAAATAACTGGGACTAGGT 59.575 44.000 0.00 0.00 0.00 3.08
519 1083 5.061721 ACTGGGACTAGGTTGTTTCAAAT 57.938 39.130 0.00 0.00 0.00 2.32
574 1140 6.610075 TTAGAACCTCAAACGTAATACCCT 57.390 37.500 0.00 0.00 0.00 4.34
575 1141 7.716799 TTAGAACCTCAAACGTAATACCCTA 57.283 36.000 0.00 0.00 0.00 3.53
577 1143 7.008021 AGAACCTCAAACGTAATACCCTAAA 57.992 36.000 0.00 0.00 0.00 1.85
578 1144 6.875726 AGAACCTCAAACGTAATACCCTAAAC 59.124 38.462 0.00 0.00 0.00 2.01
579 1145 6.112927 ACCTCAAACGTAATACCCTAAACA 57.887 37.500 0.00 0.00 0.00 2.83
580 1146 5.934043 ACCTCAAACGTAATACCCTAAACAC 59.066 40.000 0.00 0.00 0.00 3.32
581 1147 5.933463 CCTCAAACGTAATACCCTAAACACA 59.067 40.000 0.00 0.00 0.00 3.72
626 1442 4.551702 TTGCTTGGCTGAGTGTTAGATA 57.448 40.909 0.00 0.00 0.00 1.98
702 1518 5.752650 TCATGCAAGGAGAAGAGAAATGAT 58.247 37.500 0.00 0.00 0.00 2.45
1929 2785 1.227764 CTCCATGGCCATCACCTCG 60.228 63.158 17.61 2.97 0.00 4.63
1942 2798 1.517832 ACCTCGTATGGTGAGCAGC 59.482 57.895 0.00 0.00 39.17 5.25
1943 2799 1.257750 ACCTCGTATGGTGAGCAGCA 61.258 55.000 4.73 4.73 43.48 4.41
1988 2849 6.916387 CCTCATATTGTGACAATGCATTTCTC 59.084 38.462 20.29 8.00 32.22 2.87
2015 2884 2.034939 TGTGCTTGCCAAATGTGAAGAG 59.965 45.455 0.00 0.00 0.00 2.85
2313 3204 5.663106 TCTCTGGTATGCCTTCAGAAATACT 59.337 40.000 0.16 0.00 37.13 2.12
2469 3365 0.108019 TGAGTCGGCTCGGCTAGATA 59.892 55.000 13.21 0.00 43.67 1.98
2525 3421 7.317722 AGTAGAGGTCAAAGTAAAACCATCT 57.682 36.000 0.00 0.00 35.43 2.90
3281 4280 5.243426 TCAATTATTTAAAGCCTGCGTCC 57.757 39.130 0.00 0.00 0.00 4.79
3366 4567 5.518865 AGTATATGGTTCAACCTGCCAATT 58.481 37.500 8.40 0.00 39.58 2.32
3397 4601 8.506437 CATCTTAGCAATTTACTTGTGAAGTGA 58.494 33.333 9.31 0.00 42.84 3.41
3399 4603 7.931407 TCTTAGCAATTTACTTGTGAAGTGAGA 59.069 33.333 9.31 2.14 42.84 3.27
3418 4709 7.445945 AGTGAGATTATTCCCTTTAGATTCCG 58.554 38.462 0.00 0.00 0.00 4.30
3630 5014 8.806429 TGCTGTTTCATCTTTTCCTGATATTA 57.194 30.769 0.00 0.00 0.00 0.98
3991 5633 4.733165 CCAATGGTCAATGGTGGATAGAT 58.267 43.478 0.00 0.00 31.84 1.98
4377 6022 9.778741 CCTTATGTACAACTACCATAATGACAT 57.221 33.333 0.00 0.00 0.00 3.06
4540 6186 8.364894 TCTATTACGATTTCATAAGCAAGCCTA 58.635 33.333 0.00 0.00 0.00 3.93
4890 6773 9.607988 TGTATTGGACTTTAGGTGTTACATATG 57.392 33.333 0.00 0.00 0.00 1.78
4893 6776 9.609346 ATTGGACTTTAGGTGTTACATATGTAC 57.391 33.333 15.20 6.87 0.00 2.90
4895 6778 8.472413 TGGACTTTAGGTGTTACATATGTACTC 58.528 37.037 15.20 11.62 0.00 2.59
4899 6782 7.592885 TTAGGTGTTACATATGTACTCCCTC 57.407 40.000 21.23 10.12 0.00 4.30
4900 6783 4.900054 AGGTGTTACATATGTACTCCCTCC 59.100 45.833 15.20 12.48 0.00 4.30
4901 6784 4.261909 GGTGTTACATATGTACTCCCTCCG 60.262 50.000 15.20 0.00 0.00 4.63
4902 6785 4.340381 GTGTTACATATGTACTCCCTCCGT 59.660 45.833 15.20 0.00 0.00 4.69
4903 6786 4.957954 TGTTACATATGTACTCCCTCCGTT 59.042 41.667 15.20 0.00 0.00 4.44
4904 6787 5.068198 TGTTACATATGTACTCCCTCCGTTC 59.932 44.000 15.20 0.00 0.00 3.95
4905 6788 2.963782 ACATATGTACTCCCTCCGTTCC 59.036 50.000 6.56 0.00 0.00 3.62
4906 6789 2.832643 TATGTACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
4908 6791 2.832643 TGTACTCCCTCCGTTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
4909 6792 3.104519 TGTACTCCCTCCGTTCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
4910 6793 3.649843 TGTACTCCCTCCGTTCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
4911 6794 3.386726 TGTACTCCCTCCGTTCCATAATG 59.613 47.826 0.00 0.00 0.00 1.90
4912 6795 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
4913 6796 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
4914 6797 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
4915 6798 2.367567 TCCCTCCGTTCCATAATGTAGC 59.632 50.000 0.00 0.00 0.00 3.58
4916 6799 2.404215 CCTCCGTTCCATAATGTAGCG 58.596 52.381 0.00 0.00 0.00 4.26
4917 6800 1.792949 CTCCGTTCCATAATGTAGCGC 59.207 52.381 0.00 0.00 0.00 5.92
4918 6801 1.137282 TCCGTTCCATAATGTAGCGCA 59.863 47.619 11.47 0.00 0.00 6.09
4919 6802 2.143122 CCGTTCCATAATGTAGCGCAT 58.857 47.619 11.47 0.00 40.03 4.73
4920 6803 3.006003 TCCGTTCCATAATGTAGCGCATA 59.994 43.478 11.47 0.00 36.67 3.14
4921 6804 3.932710 CCGTTCCATAATGTAGCGCATAT 59.067 43.478 11.47 0.00 36.67 1.78
4922 6805 5.105675 TCCGTTCCATAATGTAGCGCATATA 60.106 40.000 11.47 0.00 36.67 0.86
4923 6806 5.232202 CCGTTCCATAATGTAGCGCATATAG 59.768 44.000 11.47 0.00 36.67 1.31
4924 6807 6.033966 CGTTCCATAATGTAGCGCATATAGA 58.966 40.000 11.47 0.00 36.67 1.98
4925 6808 6.697455 CGTTCCATAATGTAGCGCATATAGAT 59.303 38.462 11.47 0.00 36.67 1.98
4926 6809 7.222805 CGTTCCATAATGTAGCGCATATAGATT 59.777 37.037 11.47 6.47 36.67 2.40
4927 6810 8.883731 GTTCCATAATGTAGCGCATATAGATTT 58.116 33.333 11.47 0.00 36.67 2.17
4928 6811 9.448438 TTCCATAATGTAGCGCATATAGATTTT 57.552 29.630 11.47 0.00 36.67 1.82
4929 6812 9.098355 TCCATAATGTAGCGCATATAGATTTTC 57.902 33.333 11.47 0.00 36.67 2.29
4930 6813 9.102757 CCATAATGTAGCGCATATAGATTTTCT 57.897 33.333 11.47 0.00 36.67 2.52
4931 6814 9.911980 CATAATGTAGCGCATATAGATTTTCTG 57.088 33.333 11.47 0.00 36.67 3.02
4932 6815 5.845985 TGTAGCGCATATAGATTTTCTGC 57.154 39.130 11.47 0.00 0.00 4.26
4933 6816 5.296748 TGTAGCGCATATAGATTTTCTGCA 58.703 37.500 11.47 0.00 33.13 4.41
4934 6817 5.757808 TGTAGCGCATATAGATTTTCTGCAA 59.242 36.000 11.47 0.00 33.13 4.08
4935 6818 5.756195 AGCGCATATAGATTTTCTGCAAA 57.244 34.783 11.47 0.00 33.13 3.68
4936 6819 5.755813 AGCGCATATAGATTTTCTGCAAAG 58.244 37.500 11.47 0.00 33.13 2.77
4937 6820 5.297776 AGCGCATATAGATTTTCTGCAAAGT 59.702 36.000 11.47 0.00 33.13 2.66
4938 6821 5.622856 GCGCATATAGATTTTCTGCAAAGTC 59.377 40.000 0.30 0.00 33.13 3.01
4939 6822 6.718388 CGCATATAGATTTTCTGCAAAGTCA 58.282 36.000 0.00 0.00 32.03 3.41
4940 6823 7.188834 CGCATATAGATTTTCTGCAAAGTCAA 58.811 34.615 0.00 0.00 32.03 3.18
4941 6824 7.697710 CGCATATAGATTTTCTGCAAAGTCAAA 59.302 33.333 0.00 0.00 32.03 2.69
4942 6825 8.801913 GCATATAGATTTTCTGCAAAGTCAAAC 58.198 33.333 0.00 0.00 32.03 2.93
4976 6859 9.628500 AGTTTGACCAAGTTTATAGAGAAAACT 57.372 29.630 0.00 0.00 46.45 2.66
5037 6920 8.879342 AAGTATGTCTTGTGATGTATCTAAGC 57.121 34.615 0.00 0.00 34.77 3.09
5038 6921 8.011844 AGTATGTCTTGTGATGTATCTAAGCA 57.988 34.615 0.00 0.00 0.00 3.91
5039 6922 7.923344 AGTATGTCTTGTGATGTATCTAAGCAC 59.077 37.037 0.00 0.00 0.00 4.40
5040 6923 6.036577 TGTCTTGTGATGTATCTAAGCACA 57.963 37.500 0.00 0.00 37.66 4.57
5041 6924 6.643388 TGTCTTGTGATGTATCTAAGCACAT 58.357 36.000 0.00 0.00 39.00 3.21
5042 6925 6.536224 TGTCTTGTGATGTATCTAAGCACATG 59.464 38.462 0.00 0.00 39.00 3.21
5043 6926 6.536582 GTCTTGTGATGTATCTAAGCACATGT 59.463 38.462 0.00 0.00 39.00 3.21
5044 6927 6.536224 TCTTGTGATGTATCTAAGCACATGTG 59.464 38.462 21.83 21.83 39.00 3.21
5045 6928 5.733676 TGTGATGTATCTAAGCACATGTGT 58.266 37.500 26.01 10.78 35.55 3.72
5046 6929 6.172630 TGTGATGTATCTAAGCACATGTGTT 58.827 36.000 26.01 18.60 35.55 3.32
5047 6930 6.654582 TGTGATGTATCTAAGCACATGTGTTT 59.345 34.615 27.60 27.60 35.55 2.83
5048 6931 6.963242 GTGATGTATCTAAGCACATGTGTTTG 59.037 38.462 30.99 21.88 35.55 2.93
5049 6932 5.878332 TGTATCTAAGCACATGTGTTTGG 57.122 39.130 30.99 28.44 35.63 3.28
5050 6933 5.312895 TGTATCTAAGCACATGTGTTTGGT 58.687 37.500 30.99 21.54 35.63 3.67
5051 6934 6.468543 TGTATCTAAGCACATGTGTTTGGTA 58.531 36.000 30.99 20.74 35.63 3.25
5052 6935 7.109501 TGTATCTAAGCACATGTGTTTGGTAT 58.890 34.615 30.99 23.84 35.63 2.73
5053 6936 7.609918 TGTATCTAAGCACATGTGTTTGGTATT 59.390 33.333 30.99 20.54 35.63 1.89
5054 6937 6.494893 TCTAAGCACATGTGTTTGGTATTC 57.505 37.500 30.99 11.35 35.63 1.75
5055 6938 6.237901 TCTAAGCACATGTGTTTGGTATTCT 58.762 36.000 30.99 13.28 35.63 2.40
5056 6939 7.390823 TCTAAGCACATGTGTTTGGTATTCTA 58.609 34.615 30.99 13.14 35.63 2.10
5057 6940 6.500684 AAGCACATGTGTTTGGTATTCTAG 57.499 37.500 24.84 0.00 32.76 2.43
5058 6941 5.804639 AGCACATGTGTTTGGTATTCTAGA 58.195 37.500 26.01 0.00 0.00 2.43
5059 6942 6.418101 AGCACATGTGTTTGGTATTCTAGAT 58.582 36.000 26.01 0.00 0.00 1.98
5060 6943 6.317140 AGCACATGTGTTTGGTATTCTAGATG 59.683 38.462 26.01 0.00 0.00 2.90
5061 6944 6.094048 GCACATGTGTTTGGTATTCTAGATGT 59.906 38.462 26.01 0.00 0.00 3.06
5062 6945 7.279981 GCACATGTGTTTGGTATTCTAGATGTA 59.720 37.037 26.01 0.00 0.00 2.29
5063 6946 9.330063 CACATGTGTTTGGTATTCTAGATGTAT 57.670 33.333 18.03 0.00 0.00 2.29
5088 6971 9.739276 ATATGATTTTCTCTACAAACTTGGTCA 57.261 29.630 0.00 0.00 0.00 4.02
5089 6972 7.873719 TGATTTTCTCTACAAACTTGGTCAA 57.126 32.000 0.00 0.00 0.00 3.18
5090 6973 8.287439 TGATTTTCTCTACAAACTTGGTCAAA 57.713 30.769 0.00 0.00 0.00 2.69
5091 6974 8.405531 TGATTTTCTCTACAAACTTGGTCAAAG 58.594 33.333 0.00 0.00 42.07 2.77
5138 7021 9.669353 GAAAAATCTATATGCACTACATTGTGG 57.331 33.333 0.00 0.00 40.38 4.17
5139 7022 8.978874 AAAATCTATATGCACTACATTGTGGA 57.021 30.769 7.20 0.00 42.15 4.02
5140 7023 8.978874 AAATCTATATGCACTACATTGTGGAA 57.021 30.769 7.20 0.00 41.34 3.53
5141 7024 7.969536 ATCTATATGCACTACATTGTGGAAC 57.030 36.000 7.20 0.00 41.34 3.62
5142 7025 6.288294 TCTATATGCACTACATTGTGGAACC 58.712 40.000 7.20 0.00 41.34 3.62
5143 7026 1.518325 TGCACTACATTGTGGAACCG 58.482 50.000 7.20 0.00 35.42 4.44
5144 7027 1.070914 TGCACTACATTGTGGAACCGA 59.929 47.619 7.20 0.00 35.42 4.69
5145 7028 1.732259 GCACTACATTGTGGAACCGAG 59.268 52.381 7.20 0.00 38.31 4.63
5146 7029 2.346803 CACTACATTGTGGAACCGAGG 58.653 52.381 7.20 0.00 34.36 4.63
5147 7030 1.278127 ACTACATTGTGGAACCGAGGG 59.722 52.381 7.20 0.00 34.36 4.30
5148 7031 1.553248 CTACATTGTGGAACCGAGGGA 59.447 52.381 0.00 0.00 34.36 4.20
5180 7063 7.520292 GCATAATGTTGTTTCAAGCACCAAAAT 60.520 33.333 0.00 0.00 0.00 1.82
5245 7128 3.181503 GCTACATCTGTCCAATTGCACAG 60.182 47.826 21.42 21.42 41.32 3.66
5762 7674 9.869757 GCATAGTAAATAAAACCATTGGTTCTT 57.130 29.630 21.05 17.66 46.20 2.52
6382 8315 6.252599 TGGCTTGAGGTATGAATGACTATT 57.747 37.500 0.00 0.00 0.00 1.73
6655 8591 2.540515 AGTCATTACTGAATCACGGCG 58.459 47.619 4.80 4.80 33.57 6.46
6673 8614 1.197721 GCGGAAGTTTGACTGACCATG 59.802 52.381 0.00 0.00 0.00 3.66
6674 8615 1.806542 CGGAAGTTTGACTGACCATGG 59.193 52.381 11.19 11.19 0.00 3.66
6675 8616 1.541588 GGAAGTTTGACTGACCATGGC 59.458 52.381 13.04 5.35 0.00 4.40
6676 8617 2.229792 GAAGTTTGACTGACCATGGCA 58.770 47.619 13.04 10.18 0.00 4.92
6677 8618 1.901591 AGTTTGACTGACCATGGCAG 58.098 50.000 25.46 25.46 39.26 4.85
6678 8619 1.421268 AGTTTGACTGACCATGGCAGA 59.579 47.619 30.67 14.89 36.86 4.26
6679 8620 1.808945 GTTTGACTGACCATGGCAGAG 59.191 52.381 30.67 19.11 36.86 3.35
6761 8702 5.895636 TGCTGAATACCATAACCAACTTG 57.104 39.130 0.00 0.00 0.00 3.16
7028 8969 2.078665 AGCGCCCCCACCTATCAAT 61.079 57.895 2.29 0.00 0.00 2.57
7078 9019 2.749044 CATGCCCAGTGAAGCGCT 60.749 61.111 2.64 2.64 0.00 5.92
7080 9021 3.258228 ATGCCCAGTGAAGCGCTGA 62.258 57.895 12.58 0.00 43.78 4.26
7566 9508 4.336433 TCTTTCCTTCACTCAAAACTGCTG 59.664 41.667 0.00 0.00 0.00 4.41
7641 9583 7.336176 TCATTGTTCTCTTGAATCATCCAGAAG 59.664 37.037 0.88 0.00 34.40 2.85
7656 9598 2.483538 CCAGAAGTTTTTGTGCCCAAGG 60.484 50.000 0.00 0.00 0.00 3.61
7732 9681 5.011635 TCAGTTTGTAGTTGTGCAGGATAGA 59.988 40.000 0.00 0.00 0.00 1.98
7756 9705 9.263538 AGACGATAACAGTACACATTTTTAACA 57.736 29.630 0.00 0.00 0.00 2.41
7758 9707 9.263538 ACGATAACAGTACACATTTTTAACAGA 57.736 29.630 0.00 0.00 0.00 3.41
7779 9728 1.813102 TTTTTGGTGGGGGAAGCATT 58.187 45.000 0.00 0.00 0.00 3.56
7780 9729 1.813102 TTTTGGTGGGGGAAGCATTT 58.187 45.000 0.00 0.00 0.00 2.32
7783 9732 0.189574 TGGTGGGGGAAGCATTTTGA 59.810 50.000 0.00 0.00 0.00 2.69
7786 9735 2.549992 GGTGGGGGAAGCATTTTGAAAC 60.550 50.000 0.00 0.00 0.00 2.78
7788 9737 2.632512 TGGGGGAAGCATTTTGAAACTC 59.367 45.455 0.00 0.00 0.00 3.01
7790 9739 3.306294 GGGGGAAGCATTTTGAAACTCAG 60.306 47.826 0.00 0.00 0.00 3.35
7791 9740 3.306294 GGGGAAGCATTTTGAAACTCAGG 60.306 47.826 0.00 0.00 0.00 3.86
7792 9741 3.306294 GGGAAGCATTTTGAAACTCAGGG 60.306 47.826 0.00 0.00 0.00 4.45
7793 9742 3.321968 GGAAGCATTTTGAAACTCAGGGT 59.678 43.478 0.00 0.00 0.00 4.34
7794 9743 4.202253 GGAAGCATTTTGAAACTCAGGGTT 60.202 41.667 0.00 0.00 40.28 4.11
7796 9745 6.295292 GGAAGCATTTTGAAACTCAGGGTTAT 60.295 38.462 0.00 0.00 37.12 1.89
7797 9746 6.029346 AGCATTTTGAAACTCAGGGTTATG 57.971 37.500 0.00 0.00 37.12 1.90
7798 9747 5.774690 AGCATTTTGAAACTCAGGGTTATGA 59.225 36.000 0.00 0.00 37.12 2.15
7800 9749 6.366061 GCATTTTGAAACTCAGGGTTATGAAC 59.634 38.462 0.00 0.00 37.12 3.18
7802 9751 3.071479 TGAAACTCAGGGTTATGAACGC 58.929 45.455 0.00 0.00 43.93 4.84
7828 9777 3.410631 TTTTTCGCAGACCACCATAGA 57.589 42.857 0.00 0.00 34.32 1.98
7829 9778 3.627395 TTTTCGCAGACCACCATAGAT 57.373 42.857 0.00 0.00 34.32 1.98
7830 9779 2.602257 TTCGCAGACCACCATAGATG 57.398 50.000 0.00 0.00 34.32 2.90
7831 9780 1.485124 TCGCAGACCACCATAGATGT 58.515 50.000 0.00 0.00 0.00 3.06
7832 9781 1.409064 TCGCAGACCACCATAGATGTC 59.591 52.381 0.00 0.00 0.00 3.06
7833 9782 1.410517 CGCAGACCACCATAGATGTCT 59.589 52.381 0.00 0.00 38.56 3.41
7834 9783 2.159043 CGCAGACCACCATAGATGTCTT 60.159 50.000 0.00 0.00 35.97 3.01
7835 9784 3.679917 CGCAGACCACCATAGATGTCTTT 60.680 47.826 0.00 0.00 35.97 2.52
7836 9785 4.265073 GCAGACCACCATAGATGTCTTTT 58.735 43.478 0.00 0.00 35.97 2.27
7837 9786 4.333926 GCAGACCACCATAGATGTCTTTTC 59.666 45.833 0.00 0.00 35.97 2.29
7838 9787 4.878397 CAGACCACCATAGATGTCTTTTCC 59.122 45.833 0.00 0.00 35.97 3.13
7839 9788 4.785376 AGACCACCATAGATGTCTTTTCCT 59.215 41.667 0.00 0.00 34.53 3.36
7840 9789 5.104259 ACCACCATAGATGTCTTTTCCTC 57.896 43.478 0.00 0.00 0.00 3.71
7841 9790 4.122776 CCACCATAGATGTCTTTTCCTCG 58.877 47.826 0.00 0.00 0.00 4.63
7842 9791 4.383118 CCACCATAGATGTCTTTTCCTCGT 60.383 45.833 0.00 0.00 0.00 4.18
7843 9792 4.568359 CACCATAGATGTCTTTTCCTCGTG 59.432 45.833 0.00 0.00 0.00 4.35
7844 9793 4.466370 ACCATAGATGTCTTTTCCTCGTGA 59.534 41.667 0.00 0.00 0.00 4.35
7845 9794 5.046591 ACCATAGATGTCTTTTCCTCGTGAA 60.047 40.000 0.00 0.00 0.00 3.18
7846 9795 5.874810 CCATAGATGTCTTTTCCTCGTGAAA 59.125 40.000 0.00 0.00 41.18 2.69
7855 9804 4.377839 TTTCCTCGTGAAAATTTGCACA 57.622 36.364 25.57 13.60 39.98 4.57
7856 9805 3.347958 TCCTCGTGAAAATTTGCACAC 57.652 42.857 25.57 17.61 34.78 3.82
7857 9806 2.685388 TCCTCGTGAAAATTTGCACACA 59.315 40.909 25.57 12.59 34.78 3.72
7858 9807 3.044986 CCTCGTGAAAATTTGCACACAG 58.955 45.455 25.57 19.68 34.78 3.66
7859 9808 3.489059 CCTCGTGAAAATTTGCACACAGT 60.489 43.478 25.57 0.00 34.78 3.55
7860 9809 4.103365 TCGTGAAAATTTGCACACAGTT 57.897 36.364 25.57 0.00 34.78 3.16
7861 9810 4.489810 TCGTGAAAATTTGCACACAGTTT 58.510 34.783 25.57 0.00 34.78 2.66
7862 9811 5.641709 TCGTGAAAATTTGCACACAGTTTA 58.358 33.333 25.57 2.74 34.78 2.01
7863 9812 5.513495 TCGTGAAAATTTGCACACAGTTTAC 59.487 36.000 25.57 0.00 34.78 2.01
7864 9813 5.287274 CGTGAAAATTTGCACACAGTTTACA 59.713 36.000 25.57 0.00 34.78 2.41
7881 9830 6.037062 CAGTTTACAAGACACTCATGTTGACA 59.963 38.462 4.38 0.00 39.95 3.58
7896 9845 6.992123 TCATGTTGACACTTGAGAGTAAACAT 59.008 34.615 14.74 14.74 40.50 2.71
7935 10805 8.268850 TCTTCTTCTGGTTTAGTATTCAATGC 57.731 34.615 0.00 0.00 0.00 3.56
7938 10808 5.092554 TCTGGTTTAGTATTCAATGCGGA 57.907 39.130 0.00 0.00 0.00 5.54
7953 10823 1.521010 CGGAGCACATGAGCCTGAG 60.521 63.158 11.77 0.00 34.23 3.35
7971 10841 4.202010 CCTGAGCACCATTTTAAATACCCG 60.202 45.833 0.00 0.00 0.00 5.28
7992 10862 3.642705 GATTTTTGGTGTGCAACTCTCC 58.357 45.455 0.00 0.00 38.04 3.71
8003 10873 3.438434 GTGCAACTCTCCAAATCCTTCTC 59.562 47.826 0.00 0.00 0.00 2.87
8006 10876 4.323409 GCAACTCTCCAAATCCTTCTCTCT 60.323 45.833 0.00 0.00 0.00 3.10
8008 10878 5.675684 ACTCTCCAAATCCTTCTCTCTTC 57.324 43.478 0.00 0.00 0.00 2.87
8009 10879 5.341169 ACTCTCCAAATCCTTCTCTCTTCT 58.659 41.667 0.00 0.00 0.00 2.85
8011 10881 6.047511 TCTCCAAATCCTTCTCTCTTCTTG 57.952 41.667 0.00 0.00 0.00 3.02
8012 10882 4.583871 TCCAAATCCTTCTCTCTTCTTGC 58.416 43.478 0.00 0.00 0.00 4.01
8050 10920 1.229131 TACTCCCTCCGTCCCATAGT 58.771 55.000 0.00 0.00 0.00 2.12
8059 10929 3.426615 TCCGTCCCATAGTTTGCAAAAT 58.573 40.909 17.11 17.11 0.00 1.82
8061 10931 3.425404 CGTCCCATAGTTTGCAAAATCG 58.575 45.455 16.40 8.50 0.00 3.34
8074 10944 8.511321 AGTTTGCAAAATCGTCTTATATTGTGA 58.489 29.630 14.67 0.00 0.00 3.58
8078 10948 6.458206 GCAAAATCGTCTTATATTGTGAGGCA 60.458 38.462 0.00 0.00 0.00 4.75
8087 10957 2.254152 ATTGTGAGGCAGGGAGAGTA 57.746 50.000 0.00 0.00 0.00 2.59
8097 10967 7.343316 GTGAGGCAGGGAGAGTACATATATATT 59.657 40.741 0.00 0.00 0.00 1.28
8141 11011 5.009210 GCCTTTTACTCCACACACATAAACA 59.991 40.000 0.00 0.00 0.00 2.83
8144 11014 7.255451 CCTTTTACTCCACACACATAAACACAT 60.255 37.037 0.00 0.00 0.00 3.21
8148 11018 4.464947 TCCACACACATAAACACATTCCA 58.535 39.130 0.00 0.00 0.00 3.53
8156 11026 5.461737 CACATAAACACATTCCAACCACAAC 59.538 40.000 0.00 0.00 0.00 3.32
8165 11035 0.537371 CCAACCACAACACTCCCCTC 60.537 60.000 0.00 0.00 0.00 4.30
8171 11041 2.430465 CACAACACTCCCCTCAAGATG 58.570 52.381 0.00 0.00 0.00 2.90
8172 11042 2.038952 CACAACACTCCCCTCAAGATGA 59.961 50.000 0.00 0.00 0.00 2.92
8173 11043 2.304180 ACAACACTCCCCTCAAGATGAG 59.696 50.000 0.32 0.32 43.91 2.90
8174 11044 0.908198 ACACTCCCCTCAAGATGAGC 59.092 55.000 1.79 0.00 42.98 4.26
8175 11045 0.907486 CACTCCCCTCAAGATGAGCA 59.093 55.000 1.79 0.00 42.98 4.26
8176 11046 1.280133 CACTCCCCTCAAGATGAGCAA 59.720 52.381 1.79 0.00 42.98 3.91
8177 11047 1.280421 ACTCCCCTCAAGATGAGCAAC 59.720 52.381 1.79 0.00 42.98 4.17
8178 11048 1.280133 CTCCCCTCAAGATGAGCAACA 59.720 52.381 1.79 0.00 42.98 3.33
8179 11049 1.280133 TCCCCTCAAGATGAGCAACAG 59.720 52.381 1.79 0.00 42.98 3.16
8180 11050 1.280133 CCCCTCAAGATGAGCAACAGA 59.720 52.381 1.79 0.00 42.98 3.41
8181 11051 2.092538 CCCCTCAAGATGAGCAACAGAT 60.093 50.000 1.79 0.00 42.98 2.90
8182 11052 3.135348 CCCCTCAAGATGAGCAACAGATA 59.865 47.826 1.79 0.00 42.98 1.98
8183 11053 4.202440 CCCCTCAAGATGAGCAACAGATAT 60.202 45.833 1.79 0.00 42.98 1.63
8184 11054 5.374921 CCCTCAAGATGAGCAACAGATATT 58.625 41.667 1.79 0.00 42.98 1.28
8185 11055 5.238868 CCCTCAAGATGAGCAACAGATATTG 59.761 44.000 1.79 0.00 42.98 1.90
8186 11056 6.053650 CCTCAAGATGAGCAACAGATATTGA 58.946 40.000 1.79 0.00 42.98 2.57
8187 11057 6.711194 CCTCAAGATGAGCAACAGATATTGAT 59.289 38.462 1.79 0.00 42.98 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.819088 GCCTTGTCTTGAGTTTTCTTCTCT 59.181 41.667 0.00 0.00 33.59 3.10
10 11 4.023622 GGCCTTGTCTTGAGTTTTCTTCTC 60.024 45.833 0.00 0.00 0.00 2.87
15 19 2.287849 GCAGGCCTTGTCTTGAGTTTTC 60.288 50.000 0.00 0.00 0.00 2.29
51 55 0.673956 TCTCGACTCCGTCTGGTCAG 60.674 60.000 0.00 0.00 37.05 3.51
52 56 0.673956 CTCTCGACTCCGTCTGGTCA 60.674 60.000 0.00 0.00 37.05 4.02
92 97 0.815615 GGCAAGCCTCGGTCCTATTG 60.816 60.000 3.29 0.00 0.00 1.90
122 127 1.688735 CATCTGGCTCCAGTTCCGATA 59.311 52.381 14.96 0.00 43.96 2.92
164 169 2.167693 CGCACTATCCTACACAGGGAAA 59.832 50.000 0.00 0.00 42.87 3.13
243 248 2.635915 TCGGGAGGTGTGTAAAAGATGT 59.364 45.455 0.00 0.00 0.00 3.06
250 255 4.219919 TCATATCATCGGGAGGTGTGTAA 58.780 43.478 0.00 0.00 42.96 2.41
304 311 3.323243 CGTCAACGTGGAATAAGGTCTT 58.677 45.455 0.00 0.00 34.11 3.01
351 358 5.895636 AATTTAGCATTGTCACCATTCGA 57.104 34.783 0.00 0.00 0.00 3.71
366 373 9.181061 TGGTGGTAAGGTTAGAATAAATTTAGC 57.819 33.333 3.94 0.00 0.00 3.09
384 391 2.232941 GTCTTCGGTCTGATGGTGGTAA 59.767 50.000 0.00 0.00 0.00 2.85
418 425 3.691342 CTGCAACGACGGGAGGGA 61.691 66.667 0.00 0.00 0.00 4.20
425 433 2.375766 GCCTGTCTCTGCAACGACG 61.376 63.158 9.64 0.00 32.93 5.12
433 441 2.363018 TCCCTCCGCCTGTCTCTG 60.363 66.667 0.00 0.00 0.00 3.35
436 444 1.684049 CTTCTCCCTCCGCCTGTCT 60.684 63.158 0.00 0.00 0.00 3.41
472 990 8.971073 GTTATTTACAGACCTAACCTACTACCA 58.029 37.037 0.00 0.00 0.00 3.25
548 1114 8.761689 AGGGTATTACGTTTGAGGTTCTAATTA 58.238 33.333 0.00 0.00 0.00 1.40
590 1156 4.642885 GCCAAGCAATGTTATTGGGTACTA 59.357 41.667 13.19 0.00 43.06 1.82
594 1160 2.539302 AGCCAAGCAATGTTATTGGGT 58.461 42.857 11.11 11.11 46.93 4.51
626 1442 6.607004 AGTACTGCCACAAGATTAGTTACT 57.393 37.500 0.00 0.00 0.00 2.24
685 1501 8.162746 ACTCTTTTCATCATTTCTCTTCTCCTT 58.837 33.333 0.00 0.00 0.00 3.36
947 1791 2.160853 CGATCTGATGTGCGTGCGT 61.161 57.895 0.00 0.00 0.00 5.24
948 1792 1.873572 TCGATCTGATGTGCGTGCG 60.874 57.895 0.00 0.00 0.00 5.34
949 1793 1.633171 GTCGATCTGATGTGCGTGC 59.367 57.895 0.00 0.00 0.00 5.34
950 1794 1.474648 CGGTCGATCTGATGTGCGTG 61.475 60.000 0.00 0.00 0.00 5.34
1905 2761 1.527844 GATGGCCATGGAGAGCACC 60.528 63.158 26.56 6.38 0.00 5.01
1929 2785 0.749091 TGGCATGCTGCTCACCATAC 60.749 55.000 18.92 0.00 44.28 2.39
1941 2797 5.070714 AGGAGATGATAGATAGATGGCATGC 59.929 44.000 9.90 9.90 0.00 4.06
1942 2798 6.324254 TGAGGAGATGATAGATAGATGGCATG 59.676 42.308 3.81 0.00 0.00 4.06
1943 2799 6.442091 TGAGGAGATGATAGATAGATGGCAT 58.558 40.000 0.00 0.00 0.00 4.40
1944 2800 5.835582 TGAGGAGATGATAGATAGATGGCA 58.164 41.667 0.00 0.00 0.00 4.92
1945 2801 6.982160 ATGAGGAGATGATAGATAGATGGC 57.018 41.667 0.00 0.00 0.00 4.40
1988 2849 3.676172 CACATTTGGCAAGCACATACAAG 59.324 43.478 0.00 0.00 0.00 3.16
2015 2884 2.003301 GATTCAAACAGCGAGAGGGAC 58.997 52.381 0.00 0.00 0.00 4.46
2469 3365 2.665000 CTCTGGCATGACCGGTGT 59.335 61.111 14.63 0.00 46.11 4.16
2525 3421 2.176889 CCTCCCGACTTGTCCTTCTTA 58.823 52.381 0.00 0.00 0.00 2.10
3131 4027 4.515944 TGTAATCCAACAACAACTAACCCG 59.484 41.667 0.00 0.00 0.00 5.28
3281 4280 8.942338 TGTTCTTAGCTACCAATACATACTTG 57.058 34.615 0.00 0.00 0.00 3.16
3366 4567 5.476599 ACAAGTAAATTGCTAAGATGGTGCA 59.523 36.000 0.00 0.00 43.15 4.57
3397 4601 9.475620 AAAAACGGAATCTAAAGGGAATAATCT 57.524 29.630 0.00 0.00 0.00 2.40
3399 4603 9.031537 ACAAAAACGGAATCTAAAGGGAATAAT 57.968 29.630 0.00 0.00 0.00 1.28
3418 4709 6.959361 TGAGAGTGATCTAAAGCACAAAAAC 58.041 36.000 0.00 0.00 44.32 2.43
3630 5014 8.340618 AGCAACAACTAATGACTGAATTGTAT 57.659 30.769 0.00 0.00 30.40 2.29
3721 5105 4.333372 GTGTCCAAGAAAAACCGTAGTTGA 59.667 41.667 0.00 0.00 35.97 3.18
3991 5633 6.712095 CCTCATCAAGTGCTTTGCCTATATTA 59.288 38.462 0.00 0.00 36.70 0.98
4345 5990 6.422344 TGGTAGTTGTACATAAGGACACAA 57.578 37.500 0.00 0.00 0.00 3.33
4511 6156 9.535270 GCTTGCTTATGAAATCGTAATAGAATC 57.465 33.333 0.00 0.00 0.00 2.52
4540 6186 6.240894 TGCAAGTGTTTCTTCCTATTCAGAT 58.759 36.000 0.00 0.00 33.63 2.90
4890 6773 3.387050 ACATTATGGAACGGAGGGAGTAC 59.613 47.826 0.00 0.00 0.00 2.73
4892 6775 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
4893 6776 3.555168 GCTACATTATGGAACGGAGGGAG 60.555 52.174 0.00 0.00 0.00 4.30
4895 6778 2.767505 GCTACATTATGGAACGGAGGG 58.232 52.381 0.00 0.00 0.00 4.30
4899 6782 1.577468 TGCGCTACATTATGGAACGG 58.423 50.000 9.73 0.00 0.00 4.44
4900 6783 6.033966 TCTATATGCGCTACATTATGGAACG 58.966 40.000 9.73 0.00 40.38 3.95
4901 6784 8.425577 AATCTATATGCGCTACATTATGGAAC 57.574 34.615 9.73 0.00 40.38 3.62
4902 6785 9.448438 AAAATCTATATGCGCTACATTATGGAA 57.552 29.630 9.73 0.00 40.38 3.53
4903 6786 9.098355 GAAAATCTATATGCGCTACATTATGGA 57.902 33.333 9.73 6.23 40.38 3.41
4904 6787 9.102757 AGAAAATCTATATGCGCTACATTATGG 57.897 33.333 9.73 0.89 40.38 2.74
4905 6788 9.911980 CAGAAAATCTATATGCGCTACATTATG 57.088 33.333 9.73 0.00 40.38 1.90
4906 6789 8.607459 GCAGAAAATCTATATGCGCTACATTAT 58.393 33.333 9.73 0.00 40.38 1.28
4908 6791 6.427853 TGCAGAAAATCTATATGCGCTACATT 59.572 34.615 9.73 0.00 40.38 2.71
4909 6792 5.934043 TGCAGAAAATCTATATGCGCTACAT 59.066 36.000 9.73 1.21 43.18 2.29
4910 6793 5.296748 TGCAGAAAATCTATATGCGCTACA 58.703 37.500 9.73 0.00 39.74 2.74
4911 6794 5.845985 TGCAGAAAATCTATATGCGCTAC 57.154 39.130 9.73 0.00 39.74 3.58
4912 6795 6.483307 ACTTTGCAGAAAATCTATATGCGCTA 59.517 34.615 9.73 0.00 39.74 4.26
4913 6796 5.297776 ACTTTGCAGAAAATCTATATGCGCT 59.702 36.000 9.73 0.00 39.74 5.92
4914 6797 5.514279 ACTTTGCAGAAAATCTATATGCGC 58.486 37.500 0.00 0.00 39.74 6.09
4915 6798 6.718388 TGACTTTGCAGAAAATCTATATGCG 58.282 36.000 0.00 0.00 39.74 4.73
4916 6799 8.801913 GTTTGACTTTGCAGAAAATCTATATGC 58.198 33.333 0.00 0.00 37.40 3.14
4950 6833 9.628500 AGTTTTCTCTATAAACTTGGTCAAACT 57.372 29.630 0.00 0.00 41.69 2.66
5011 6894 9.319143 GCTTAGATACATCACAAGACATACTTT 57.681 33.333 7.43 0.00 36.61 2.66
5012 6895 8.478066 TGCTTAGATACATCACAAGACATACTT 58.522 33.333 7.43 0.00 39.70 2.24
5013 6896 7.923344 GTGCTTAGATACATCACAAGACATACT 59.077 37.037 7.43 0.00 0.00 2.12
5014 6897 7.706607 TGTGCTTAGATACATCACAAGACATAC 59.293 37.037 7.43 0.00 35.08 2.39
5015 6898 7.781056 TGTGCTTAGATACATCACAAGACATA 58.219 34.615 7.43 2.88 35.08 2.29
5016 6899 6.643388 TGTGCTTAGATACATCACAAGACAT 58.357 36.000 7.43 0.00 35.08 3.06
5017 6900 6.036577 TGTGCTTAGATACATCACAAGACA 57.963 37.500 7.43 6.40 35.08 3.41
5018 6901 6.536582 ACATGTGCTTAGATACATCACAAGAC 59.463 38.462 0.00 4.73 40.46 3.01
5019 6902 6.536224 CACATGTGCTTAGATACATCACAAGA 59.464 38.462 13.94 0.00 40.46 3.02
5020 6903 6.314648 ACACATGTGCTTAGATACATCACAAG 59.685 38.462 25.68 0.00 40.46 3.16
5021 6904 6.172630 ACACATGTGCTTAGATACATCACAA 58.827 36.000 25.68 0.00 40.46 3.33
5022 6905 5.733676 ACACATGTGCTTAGATACATCACA 58.266 37.500 25.68 0.00 41.18 3.58
5023 6906 6.668541 AACACATGTGCTTAGATACATCAC 57.331 37.500 25.68 0.00 35.46 3.06
5024 6907 6.093909 CCAAACACATGTGCTTAGATACATCA 59.906 38.462 25.68 0.00 35.46 3.07
5025 6908 6.094048 ACCAAACACATGTGCTTAGATACATC 59.906 38.462 25.68 0.00 35.46 3.06
5026 6909 5.945784 ACCAAACACATGTGCTTAGATACAT 59.054 36.000 25.68 0.00 37.99 2.29
5027 6910 5.312895 ACCAAACACATGTGCTTAGATACA 58.687 37.500 25.68 0.00 0.00 2.29
5028 6911 5.880054 ACCAAACACATGTGCTTAGATAC 57.120 39.130 25.68 0.00 0.00 2.24
5029 6912 8.046708 AGAATACCAAACACATGTGCTTAGATA 58.953 33.333 25.68 12.33 0.00 1.98
5030 6913 6.886459 AGAATACCAAACACATGTGCTTAGAT 59.114 34.615 25.68 10.44 0.00 1.98
5031 6914 6.237901 AGAATACCAAACACATGTGCTTAGA 58.762 36.000 25.68 8.65 0.00 2.10
5032 6915 6.500684 AGAATACCAAACACATGTGCTTAG 57.499 37.500 25.68 15.20 0.00 2.18
5033 6916 7.390823 TCTAGAATACCAAACACATGTGCTTA 58.609 34.615 25.68 9.88 0.00 3.09
5034 6917 6.237901 TCTAGAATACCAAACACATGTGCTT 58.762 36.000 25.68 17.23 0.00 3.91
5035 6918 5.804639 TCTAGAATACCAAACACATGTGCT 58.195 37.500 25.68 11.31 0.00 4.40
5036 6919 6.094048 ACATCTAGAATACCAAACACATGTGC 59.906 38.462 25.68 6.00 0.00 4.57
5037 6920 7.615582 ACATCTAGAATACCAAACACATGTG 57.384 36.000 24.25 24.25 0.00 3.21
5062 6945 9.739276 TGACCAAGTTTGTAGAGAAAATCATAT 57.261 29.630 0.00 0.00 0.00 1.78
5063 6946 9.567776 TTGACCAAGTTTGTAGAGAAAATCATA 57.432 29.630 0.00 0.00 0.00 2.15
5064 6947 8.463930 TTGACCAAGTTTGTAGAGAAAATCAT 57.536 30.769 0.00 0.00 0.00 2.45
5065 6948 7.873719 TTGACCAAGTTTGTAGAGAAAATCA 57.126 32.000 0.00 0.00 0.00 2.57
5066 6949 8.406297 ACTTTGACCAAGTTTGTAGAGAAAATC 58.594 33.333 0.00 0.00 43.89 2.17
5067 6950 8.293699 ACTTTGACCAAGTTTGTAGAGAAAAT 57.706 30.769 0.00 0.00 43.89 1.82
5068 6951 7.696992 ACTTTGACCAAGTTTGTAGAGAAAA 57.303 32.000 0.00 0.00 43.89 2.29
5112 6995 9.669353 CCACAATGTAGTGCATATAGATTTTTC 57.331 33.333 0.00 0.00 36.67 2.29
5113 6996 9.407380 TCCACAATGTAGTGCATATAGATTTTT 57.593 29.630 0.00 0.00 36.67 1.94
5114 6997 8.978874 TCCACAATGTAGTGCATATAGATTTT 57.021 30.769 0.00 0.00 36.67 1.82
5115 6998 8.840321 GTTCCACAATGTAGTGCATATAGATTT 58.160 33.333 0.00 0.00 36.67 2.17
5116 6999 7.445402 GGTTCCACAATGTAGTGCATATAGATT 59.555 37.037 0.00 0.00 36.67 2.40
5117 7000 6.936900 GGTTCCACAATGTAGTGCATATAGAT 59.063 38.462 0.00 0.00 36.67 1.98
5118 7001 6.288294 GGTTCCACAATGTAGTGCATATAGA 58.712 40.000 0.00 0.00 36.67 1.98
5119 7002 5.177511 CGGTTCCACAATGTAGTGCATATAG 59.822 44.000 0.00 0.00 36.67 1.31
5120 7003 5.053811 CGGTTCCACAATGTAGTGCATATA 58.946 41.667 0.00 0.00 36.67 0.86
5121 7004 3.876914 CGGTTCCACAATGTAGTGCATAT 59.123 43.478 0.00 0.00 36.67 1.78
5122 7005 3.055747 TCGGTTCCACAATGTAGTGCATA 60.056 43.478 0.00 0.00 36.67 3.14
5123 7006 2.083774 CGGTTCCACAATGTAGTGCAT 58.916 47.619 0.00 0.00 40.03 3.96
5124 7007 1.070914 TCGGTTCCACAATGTAGTGCA 59.929 47.619 0.00 0.00 38.18 4.57
5125 7008 1.732259 CTCGGTTCCACAATGTAGTGC 59.268 52.381 0.00 0.00 38.18 4.40
5126 7009 2.346803 CCTCGGTTCCACAATGTAGTG 58.653 52.381 0.00 0.00 39.21 2.74
5127 7010 1.278127 CCCTCGGTTCCACAATGTAGT 59.722 52.381 0.00 0.00 0.00 2.73
5128 7011 1.553248 TCCCTCGGTTCCACAATGTAG 59.447 52.381 0.00 0.00 0.00 2.74
5129 7012 1.553248 CTCCCTCGGTTCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
5130 7013 0.324943 CTCCCTCGGTTCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
5131 7014 0.324943 ACTCCCTCGGTTCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
5132 7015 1.946984 TACTCCCTCGGTTCCACAAT 58.053 50.000 0.00 0.00 0.00 2.71
5133 7016 1.946984 ATACTCCCTCGGTTCCACAA 58.053 50.000 0.00 0.00 0.00 3.33
5134 7017 1.553248 CAATACTCCCTCGGTTCCACA 59.447 52.381 0.00 0.00 0.00 4.17
5135 7018 1.742750 GCAATACTCCCTCGGTTCCAC 60.743 57.143 0.00 0.00 0.00 4.02
5136 7019 0.539986 GCAATACTCCCTCGGTTCCA 59.460 55.000 0.00 0.00 0.00 3.53
5137 7020 0.539986 TGCAATACTCCCTCGGTTCC 59.460 55.000 0.00 0.00 0.00 3.62
5138 7021 2.622064 ATGCAATACTCCCTCGGTTC 57.378 50.000 0.00 0.00 0.00 3.62
5139 7022 4.141482 ACATTATGCAATACTCCCTCGGTT 60.141 41.667 0.00 0.00 0.00 4.44
5140 7023 3.391296 ACATTATGCAATACTCCCTCGGT 59.609 43.478 0.00 0.00 0.00 4.69
5141 7024 4.008074 ACATTATGCAATACTCCCTCGG 57.992 45.455 0.00 0.00 0.00 4.63
5142 7025 4.816385 ACAACATTATGCAATACTCCCTCG 59.184 41.667 0.00 0.00 0.00 4.63
5143 7026 6.699575 AACAACATTATGCAATACTCCCTC 57.300 37.500 0.00 0.00 0.00 4.30
5144 7027 6.663093 TGAAACAACATTATGCAATACTCCCT 59.337 34.615 0.00 0.00 0.00 4.20
5145 7028 6.862209 TGAAACAACATTATGCAATACTCCC 58.138 36.000 0.00 0.00 0.00 4.30
5146 7029 7.009540 GCTTGAAACAACATTATGCAATACTCC 59.990 37.037 0.00 0.00 0.00 3.85
5147 7030 7.541783 TGCTTGAAACAACATTATGCAATACTC 59.458 33.333 0.00 0.00 0.00 2.59
5148 7031 7.329226 GTGCTTGAAACAACATTATGCAATACT 59.671 33.333 0.00 0.00 0.00 2.12
5180 7063 6.681729 ATCACAAGGGTTAGAGAAAGTACA 57.318 37.500 0.00 0.00 0.00 2.90
5245 7128 4.982916 AGAGAACACGTACATTCACTGTTC 59.017 41.667 8.56 5.65 39.39 3.18
5762 7674 6.003950 ACAAGGCAGTTGAATAAGAAGCTTA 58.996 36.000 0.00 0.00 38.60 3.09
5945 7857 4.047166 AGGAATGGTGGGATATCACAAGA 58.953 43.478 9.82 0.00 39.27 3.02
6389 8323 9.341899 GTCGAAAAATTTAGTTGCATCAAGTAT 57.658 29.630 0.00 0.00 30.67 2.12
6391 8325 6.640907 GGTCGAAAAATTTAGTTGCATCAAGT 59.359 34.615 0.00 0.00 0.00 3.16
6392 8326 6.640499 TGGTCGAAAAATTTAGTTGCATCAAG 59.360 34.615 0.00 0.00 0.00 3.02
6393 8327 6.507900 TGGTCGAAAAATTTAGTTGCATCAA 58.492 32.000 0.00 0.00 0.00 2.57
6395 8329 6.640907 AGTTGGTCGAAAAATTTAGTTGCATC 59.359 34.615 0.00 0.00 0.00 3.91
6398 8334 6.822073 AAGTTGGTCGAAAAATTTAGTTGC 57.178 33.333 0.00 0.00 0.00 4.17
6603 8539 4.338012 TGATCTATATGGGCAAATGGCTG 58.662 43.478 6.93 0.00 44.01 4.85
6655 8591 1.541588 GCCATGGTCAGTCAAACTTCC 59.458 52.381 14.67 0.00 0.00 3.46
6673 8614 1.261238 ACTACTGTCTGCCCTCTGCC 61.261 60.000 0.00 0.00 40.16 4.85
6674 8615 0.610687 AACTACTGTCTGCCCTCTGC 59.389 55.000 0.00 0.00 41.77 4.26
6675 8616 2.094286 CAGAACTACTGTCTGCCCTCTG 60.094 54.545 0.00 0.00 41.30 3.35
6676 8617 2.175202 CAGAACTACTGTCTGCCCTCT 58.825 52.381 0.00 0.00 41.30 3.69
6677 8618 2.171840 TCAGAACTACTGTCTGCCCTC 58.828 52.381 0.00 0.00 45.86 4.30
6678 8619 2.310779 TCAGAACTACTGTCTGCCCT 57.689 50.000 0.00 0.00 45.86 5.19
6679 8620 2.300437 ACTTCAGAACTACTGTCTGCCC 59.700 50.000 0.00 0.00 45.86 5.36
6761 8702 3.064820 CCTGTCGTGCCATGGTAAATTAC 59.935 47.826 14.67 5.94 0.00 1.89
7028 8969 0.963962 GAGTTAGTGTCACCGGTGGA 59.036 55.000 33.40 18.27 0.00 4.02
7078 9019 6.570672 TCTTCTTAGAAGAACGCTTAGTCA 57.429 37.500 20.89 0.00 39.95 3.41
7094 9035 1.743958 CGACTCGCCTCCTTCTTCTTA 59.256 52.381 0.00 0.00 0.00 2.10
7149 9090 1.064060 GTACAAATCATGCACCTCCGC 59.936 52.381 0.00 0.00 0.00 5.54
7413 9355 4.319177 CCACTCCCTAAAGAACACTCTTG 58.681 47.826 0.00 0.00 41.23 3.02
7566 9508 7.976135 ATAAGCCATCAGTTACAAGATCATC 57.024 36.000 0.00 0.00 0.00 2.92
7641 9583 1.119684 AGACCCTTGGGCACAAAAAC 58.880 50.000 1.48 0.00 35.89 2.43
7656 9598 4.780815 TGACATAATCACCATGGAAGACC 58.219 43.478 21.47 0.00 29.99 3.85
7699 9641 6.972328 GCACAACTACAAACTGAGATCAAAAA 59.028 34.615 0.00 0.00 0.00 1.94
7732 9681 9.263538 TCTGTTAAAAATGTGTACTGTTATCGT 57.736 29.630 0.00 0.00 0.00 3.73
7761 9710 1.813102 AAATGCTTCCCCCACCAAAA 58.187 45.000 0.00 0.00 0.00 2.44
7762 9711 1.419387 CAAAATGCTTCCCCCACCAAA 59.581 47.619 0.00 0.00 0.00 3.28
7763 9712 1.055040 CAAAATGCTTCCCCCACCAA 58.945 50.000 0.00 0.00 0.00 3.67
7764 9713 0.189574 TCAAAATGCTTCCCCCACCA 59.810 50.000 0.00 0.00 0.00 4.17
7765 9714 1.347062 TTCAAAATGCTTCCCCCACC 58.653 50.000 0.00 0.00 0.00 4.61
7769 9718 3.306294 CCTGAGTTTCAAAATGCTTCCCC 60.306 47.826 0.00 0.00 0.00 4.81
7770 9719 3.306294 CCCTGAGTTTCAAAATGCTTCCC 60.306 47.826 0.00 0.00 0.00 3.97
7771 9720 3.321968 ACCCTGAGTTTCAAAATGCTTCC 59.678 43.478 0.00 0.00 0.00 3.46
7772 9721 4.590850 ACCCTGAGTTTCAAAATGCTTC 57.409 40.909 0.00 0.00 0.00 3.86
7774 9723 5.774690 TCATAACCCTGAGTTTCAAAATGCT 59.225 36.000 0.00 0.00 40.05 3.79
7775 9724 6.024552 TCATAACCCTGAGTTTCAAAATGC 57.975 37.500 0.00 0.00 40.05 3.56
7776 9725 6.582295 CGTTCATAACCCTGAGTTTCAAAATG 59.418 38.462 0.00 0.00 40.05 2.32
7777 9726 6.677913 CGTTCATAACCCTGAGTTTCAAAAT 58.322 36.000 0.00 0.00 40.05 1.82
7779 9728 4.023536 GCGTTCATAACCCTGAGTTTCAAA 60.024 41.667 0.00 0.00 40.05 2.69
7780 9729 3.500680 GCGTTCATAACCCTGAGTTTCAA 59.499 43.478 0.00 0.00 40.05 2.69
7783 9732 3.418684 AGCGTTCATAACCCTGAGTTT 57.581 42.857 0.00 0.00 40.05 2.66
7786 9735 6.436843 AAAATTAGCGTTCATAACCCTGAG 57.563 37.500 0.00 0.00 0.00 3.35
7808 9757 3.410631 TCTATGGTGGTCTGCGAAAAA 57.589 42.857 0.00 0.00 0.00 1.94
7809 9758 3.270027 CATCTATGGTGGTCTGCGAAAA 58.730 45.455 0.00 0.00 0.00 2.29
7810 9759 2.236146 ACATCTATGGTGGTCTGCGAAA 59.764 45.455 0.00 0.00 0.00 3.46
7811 9760 1.831106 ACATCTATGGTGGTCTGCGAA 59.169 47.619 0.00 0.00 0.00 4.70
7812 9761 1.409064 GACATCTATGGTGGTCTGCGA 59.591 52.381 0.00 0.00 0.00 5.10
7813 9762 1.410517 AGACATCTATGGTGGTCTGCG 59.589 52.381 5.01 0.00 39.04 5.18
7814 9763 3.550437 AAGACATCTATGGTGGTCTGC 57.450 47.619 6.26 0.00 40.29 4.26
7815 9764 4.878397 GGAAAAGACATCTATGGTGGTCTG 59.122 45.833 6.26 0.00 40.29 3.51
7817 9766 5.104259 AGGAAAAGACATCTATGGTGGTC 57.896 43.478 0.00 0.00 0.00 4.02
7818 9767 4.383118 CGAGGAAAAGACATCTATGGTGGT 60.383 45.833 0.00 0.00 0.00 4.16
7819 9768 4.122776 CGAGGAAAAGACATCTATGGTGG 58.877 47.826 0.00 0.00 0.00 4.61
7821 9770 4.466370 TCACGAGGAAAAGACATCTATGGT 59.534 41.667 0.00 0.00 0.00 3.55
7822 9771 5.011090 TCACGAGGAAAAGACATCTATGG 57.989 43.478 0.00 0.00 0.00 2.74
7823 9772 6.968131 TTTCACGAGGAAAAGACATCTATG 57.032 37.500 4.89 0.00 42.37 2.23
7834 9783 4.109050 GTGTGCAAATTTTCACGAGGAAA 58.891 39.130 14.79 0.00 43.59 3.13
7835 9784 3.129462 TGTGTGCAAATTTTCACGAGGAA 59.871 39.130 14.79 0.00 36.06 3.36
7836 9785 2.685388 TGTGTGCAAATTTTCACGAGGA 59.315 40.909 14.79 0.00 36.06 3.71
7837 9786 3.044986 CTGTGTGCAAATTTTCACGAGG 58.955 45.455 14.79 4.95 36.06 4.63
7838 9787 3.694734 ACTGTGTGCAAATTTTCACGAG 58.305 40.909 14.79 14.47 36.06 4.18
7839 9788 3.773860 ACTGTGTGCAAATTTTCACGA 57.226 38.095 14.79 4.81 36.06 4.35
7840 9789 4.838665 AAACTGTGTGCAAATTTTCACG 57.161 36.364 14.79 4.99 36.06 4.35
7841 9790 6.639671 TGTAAACTGTGTGCAAATTTTCAC 57.360 33.333 13.23 13.23 0.00 3.18
7842 9791 7.062839 GTCTTGTAAACTGTGTGCAAATTTTCA 59.937 33.333 3.12 0.00 0.00 2.69
7843 9792 7.062839 TGTCTTGTAAACTGTGTGCAAATTTTC 59.937 33.333 3.12 0.00 0.00 2.29
7844 9793 6.870965 TGTCTTGTAAACTGTGTGCAAATTTT 59.129 30.769 3.12 0.00 0.00 1.82
7845 9794 6.310224 GTGTCTTGTAAACTGTGTGCAAATTT 59.690 34.615 3.12 0.00 0.00 1.82
7846 9795 5.804979 GTGTCTTGTAAACTGTGTGCAAATT 59.195 36.000 3.12 0.00 0.00 1.82
7847 9796 5.125417 AGTGTCTTGTAAACTGTGTGCAAAT 59.875 36.000 3.12 0.00 0.00 2.32
7848 9797 4.457603 AGTGTCTTGTAAACTGTGTGCAAA 59.542 37.500 3.12 0.00 0.00 3.68
7849 9798 4.006989 AGTGTCTTGTAAACTGTGTGCAA 58.993 39.130 1.52 1.52 0.00 4.08
7850 9799 3.605634 AGTGTCTTGTAAACTGTGTGCA 58.394 40.909 0.00 0.00 0.00 4.57
7851 9800 3.621268 TGAGTGTCTTGTAAACTGTGTGC 59.379 43.478 0.00 0.00 0.00 4.57
7852 9801 5.294306 ACATGAGTGTCTTGTAAACTGTGTG 59.706 40.000 0.00 0.00 33.67 3.82
7853 9802 5.428253 ACATGAGTGTCTTGTAAACTGTGT 58.572 37.500 0.00 0.00 33.67 3.72
7854 9803 5.991328 ACATGAGTGTCTTGTAAACTGTG 57.009 39.130 0.00 0.00 33.67 3.66
7855 9804 6.037172 GTCAACATGAGTGTCTTGTAAACTGT 59.963 38.462 0.00 0.00 37.67 3.55
7856 9805 6.037062 TGTCAACATGAGTGTCTTGTAAACTG 59.963 38.462 0.00 0.00 37.67 3.16
7857 9806 6.037172 GTGTCAACATGAGTGTCTTGTAAACT 59.963 38.462 0.00 0.00 37.67 2.66
7858 9807 6.037172 AGTGTCAACATGAGTGTCTTGTAAAC 59.963 38.462 0.00 0.39 37.67 2.01
7859 9808 6.112734 AGTGTCAACATGAGTGTCTTGTAAA 58.887 36.000 0.00 0.00 37.67 2.01
7860 9809 5.670485 AGTGTCAACATGAGTGTCTTGTAA 58.330 37.500 0.00 0.00 37.67 2.41
7861 9810 5.276461 AGTGTCAACATGAGTGTCTTGTA 57.724 39.130 0.00 0.00 37.67 2.41
7862 9811 4.142609 AGTGTCAACATGAGTGTCTTGT 57.857 40.909 0.00 0.00 37.67 3.16
7863 9812 4.571984 TCAAGTGTCAACATGAGTGTCTTG 59.428 41.667 0.00 12.59 37.67 3.02
7864 9813 4.769688 TCAAGTGTCAACATGAGTGTCTT 58.230 39.130 0.00 2.36 37.67 3.01
7935 10805 1.521010 CTCAGGCTCATGTGCTCCG 60.521 63.158 18.44 8.17 0.00 4.63
7938 10808 1.376942 GTGCTCAGGCTCATGTGCT 60.377 57.895 18.44 3.19 39.73 4.40
7951 10821 5.767816 ATCGGGTATTTAAAATGGTGCTC 57.232 39.130 0.00 0.00 0.00 4.26
7953 10823 7.413548 CCAAAAATCGGGTATTTAAAATGGTGC 60.414 37.037 0.00 0.00 36.76 5.01
7971 10841 3.068024 TGGAGAGTTGCACACCAAAAATC 59.932 43.478 0.00 0.00 34.68 2.17
7992 10862 4.587891 AGGCAAGAAGAGAGAAGGATTTG 58.412 43.478 0.00 0.00 0.00 2.32
8003 10873 3.131709 TGTCTTCCAAGGCAAGAAGAG 57.868 47.619 12.38 0.00 46.82 2.85
8006 10876 4.365514 TGTATGTCTTCCAAGGCAAGAA 57.634 40.909 0.00 0.00 44.82 2.52
8008 10878 6.949352 ATTATGTATGTCTTCCAAGGCAAG 57.051 37.500 0.00 0.00 44.82 4.01
8009 10879 7.573710 AGTATTATGTATGTCTTCCAAGGCAA 58.426 34.615 0.00 0.00 44.82 4.52
8011 10881 6.651225 GGAGTATTATGTATGTCTTCCAAGGC 59.349 42.308 0.00 0.00 0.00 4.35
8012 10882 7.016661 AGGGAGTATTATGTATGTCTTCCAAGG 59.983 40.741 0.00 0.00 0.00 3.61
8050 10920 7.967854 CCTCACAATATAAGACGATTTTGCAAA 59.032 33.333 8.05 8.05 0.00 3.68
8059 10929 3.069586 CCCTGCCTCACAATATAAGACGA 59.930 47.826 0.00 0.00 0.00 4.20
8061 10931 4.345257 TCTCCCTGCCTCACAATATAAGAC 59.655 45.833 0.00 0.00 0.00 3.01
8071 10941 1.490574 ATGTACTCTCCCTGCCTCAC 58.509 55.000 0.00 0.00 0.00 3.51
8074 10944 7.422512 TGAATATATATGTACTCTCCCTGCCT 58.577 38.462 0.00 0.00 0.00 4.75
8078 10948 7.895962 TGCACTGAATATATATGTACTCTCCCT 59.104 37.037 0.00 0.00 0.00 4.20
8141 11011 2.306847 GGAGTGTTGTGGTTGGAATGT 58.693 47.619 0.00 0.00 0.00 2.71
8144 11014 0.106419 GGGGAGTGTTGTGGTTGGAA 60.106 55.000 0.00 0.00 0.00 3.53
8148 11018 0.923358 TTGAGGGGAGTGTTGTGGTT 59.077 50.000 0.00 0.00 0.00 3.67
8156 11026 0.907486 TGCTCATCTTGAGGGGAGTG 59.093 55.000 6.64 0.00 44.43 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.