Multiple sequence alignment - TraesCS5A01G277800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G277800 chr5A 100.000 2959 0 0 806 3764 487686993 487684035 0.000000e+00 5465
1 TraesCS5A01G277800 chr5A 100.000 388 0 0 1 388 487687798 487687411 0.000000e+00 717
2 TraesCS5A01G277800 chr1A 95.457 1651 74 1 955 2605 573393093 573394742 0.000000e+00 2632
3 TraesCS5A01G277800 chr1A 93.884 981 51 5 2789 3764 573395037 573396013 0.000000e+00 1471
4 TraesCS5A01G277800 chr7A 95.012 1263 33 5 2510 3764 605168382 605169622 0.000000e+00 1956
5 TraesCS5A01G277800 chr7A 73.872 532 119 19 3244 3764 733355161 733355683 1.070000e-45 195
6 TraesCS5A01G277800 chr7B 91.401 721 56 6 3050 3764 711070651 711071371 0.000000e+00 983
7 TraesCS5A01G277800 chr7B 79.458 701 138 6 1721 2419 154740440 154741136 3.380000e-135 492
8 TraesCS5A01G277800 chr7B 79.459 628 123 5 3141 3763 154741138 154741764 1.240000e-119 440
9 TraesCS5A01G277800 chr3D 77.922 693 134 13 3073 3759 500022933 500023612 7.520000e-112 414
10 TraesCS5A01G277800 chr3D 73.214 616 152 11 1862 2475 573424989 573425593 1.060000e-50 211
11 TraesCS5A01G277800 chr3D 74.008 504 125 6 1858 2358 29567051 29567551 2.290000e-47 200
12 TraesCS5A01G277800 chr4B 92.193 269 17 3 2732 2999 42747386 42747651 9.870000e-101 377
13 TraesCS5A01G277800 chr6D 73.430 621 150 13 1858 2475 49455063 49455671 6.330000e-53 219
14 TraesCS5A01G277800 chr6A 80.277 289 57 0 3475 3763 606650697 606650409 6.330000e-53 219
15 TraesCS5A01G277800 chrUn 73.496 615 145 14 1858 2468 223003531 223004131 2.280000e-52 217
16 TraesCS5A01G277800 chrUn 72.846 615 149 14 1858 2468 342980173 342979573 1.070000e-45 195
17 TraesCS5A01G277800 chr5B 79.730 296 56 4 3471 3764 82452232 82451939 1.060000e-50 211
18 TraesCS5A01G277800 chr5B 72.727 506 127 8 1858 2358 450689376 450688877 3.890000e-35 159
19 TraesCS5A01G277800 chr3B 73.065 620 154 11 1858 2475 167110353 167110961 1.370000e-49 207
20 TraesCS5A01G277800 chr1B 77.536 276 62 0 3489 3764 391217971 391218246 2.330000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G277800 chr5A 487684035 487687798 3763 True 3091.0 5465 100.0000 1 3764 2 chr5A.!!$R1 3763
1 TraesCS5A01G277800 chr1A 573393093 573396013 2920 False 2051.5 2632 94.6705 955 3764 2 chr1A.!!$F1 2809
2 TraesCS5A01G277800 chr7A 605168382 605169622 1240 False 1956.0 1956 95.0120 2510 3764 1 chr7A.!!$F1 1254
3 TraesCS5A01G277800 chr7B 711070651 711071371 720 False 983.0 983 91.4010 3050 3764 1 chr7B.!!$F1 714
4 TraesCS5A01G277800 chr7B 154740440 154741764 1324 False 466.0 492 79.4585 1721 3763 2 chr7B.!!$F2 2042
5 TraesCS5A01G277800 chr3D 500022933 500023612 679 False 414.0 414 77.9220 3073 3759 1 chr3D.!!$F2 686
6 TraesCS5A01G277800 chr3D 573424989 573425593 604 False 211.0 211 73.2140 1862 2475 1 chr3D.!!$F3 613
7 TraesCS5A01G277800 chr6D 49455063 49455671 608 False 219.0 219 73.4300 1858 2475 1 chr6D.!!$F1 617
8 TraesCS5A01G277800 chrUn 223003531 223004131 600 False 217.0 217 73.4960 1858 2468 1 chrUn.!!$F1 610
9 TraesCS5A01G277800 chr3B 167110353 167110961 608 False 207.0 207 73.0650 1858 2475 1 chr3B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 846 0.033504 TGAAGTGAGCGAGTGAACCC 59.966 55.0 0.00 0.0 0.0 4.11 F
910 911 0.034198 TTCCCTCGCGTGTCATTTCA 59.966 50.0 5.77 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 1856 0.107897 TTGATGACGATCGGGTTGGG 60.108 55.0 20.98 0.0 0.0 4.12 R
2902 3077 0.391395 CAGTCCCTTCAGAGCAGCAG 60.391 60.0 0.00 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.241367 AGACGTATATTTGGAAAAATGTTGACC 58.759 33.333 0.00 0.00 0.00 4.02
53 54 7.887381 ACGTATATTTGGAAAAATGTTGACCA 58.113 30.769 0.00 0.00 0.00 4.02
54 55 8.026607 ACGTATATTTGGAAAAATGTTGACCAG 58.973 33.333 0.00 0.00 32.16 4.00
55 56 7.487829 CGTATATTTGGAAAAATGTTGACCAGG 59.512 37.037 0.00 0.00 32.16 4.45
56 57 5.628797 ATTTGGAAAAATGTTGACCAGGT 57.371 34.783 0.00 0.00 32.16 4.00
57 58 6.739331 ATTTGGAAAAATGTTGACCAGGTA 57.261 33.333 0.00 0.00 32.16 3.08
58 59 6.739331 TTTGGAAAAATGTTGACCAGGTAT 57.261 33.333 0.00 0.00 32.16 2.73
59 60 6.739331 TTGGAAAAATGTTGACCAGGTATT 57.261 33.333 0.00 0.00 32.16 1.89
60 61 6.739331 TGGAAAAATGTTGACCAGGTATTT 57.261 33.333 0.00 0.00 0.00 1.40
61 62 7.841282 TGGAAAAATGTTGACCAGGTATTTA 57.159 32.000 0.00 0.00 0.00 1.40
62 63 8.251383 TGGAAAAATGTTGACCAGGTATTTAA 57.749 30.769 0.00 0.00 0.00 1.52
63 64 8.705594 TGGAAAAATGTTGACCAGGTATTTAAA 58.294 29.630 0.00 0.00 0.00 1.52
64 65 9.549078 GGAAAAATGTTGACCAGGTATTTAAAA 57.451 29.630 0.00 0.00 0.00 1.52
125 126 6.236017 TCGTGTATTTGAGAAATGTTCACC 57.764 37.500 0.00 0.00 31.38 4.02
126 127 5.079406 CGTGTATTTGAGAAATGTTCACCG 58.921 41.667 0.00 0.00 31.38 4.94
127 128 5.333798 CGTGTATTTGAGAAATGTTCACCGT 60.334 40.000 0.00 0.00 31.38 4.83
128 129 5.851177 GTGTATTTGAGAAATGTTCACCGTG 59.149 40.000 0.00 0.00 32.38 4.94
129 130 5.529430 TGTATTTGAGAAATGTTCACCGTGT 59.471 36.000 0.00 0.00 32.38 4.49
130 131 6.706716 TGTATTTGAGAAATGTTCACCGTGTA 59.293 34.615 0.00 0.00 32.38 2.90
131 132 6.817765 ATTTGAGAAATGTTCACCGTGTAT 57.182 33.333 0.00 0.00 0.00 2.29
132 133 5.856126 TTGAGAAATGTTCACCGTGTATC 57.144 39.130 0.00 0.00 0.00 2.24
133 134 5.147330 TGAGAAATGTTCACCGTGTATCT 57.853 39.130 0.00 0.00 0.00 1.98
134 135 6.275494 TGAGAAATGTTCACCGTGTATCTA 57.725 37.500 0.00 0.00 0.00 1.98
135 136 6.693466 TGAGAAATGTTCACCGTGTATCTAA 58.307 36.000 0.00 0.00 0.00 2.10
136 137 7.156000 TGAGAAATGTTCACCGTGTATCTAAA 58.844 34.615 0.00 0.00 0.00 1.85
137 138 7.658167 TGAGAAATGTTCACCGTGTATCTAAAA 59.342 33.333 0.00 0.00 0.00 1.52
138 139 8.385898 AGAAATGTTCACCGTGTATCTAAAAA 57.614 30.769 0.00 0.00 0.00 1.94
193 194 8.603242 AGTATGTACTGAAGAAAAATTGACGT 57.397 30.769 0.00 0.00 34.72 4.34
194 195 9.701098 AGTATGTACTGAAGAAAAATTGACGTA 57.299 29.630 0.00 0.00 34.72 3.57
197 198 8.373048 TGTACTGAAGAAAAATTGACGTATGT 57.627 30.769 0.00 0.00 0.00 2.29
198 199 8.832521 TGTACTGAAGAAAAATTGACGTATGTT 58.167 29.630 0.00 0.00 0.00 2.71
275 276 9.961264 AAATTTAAAAACCTGTAAACAAAGGGA 57.039 25.926 0.00 0.00 37.94 4.20
276 277 9.961264 AATTTAAAAACCTGTAAACAAAGGGAA 57.039 25.926 0.00 0.00 37.94 3.97
277 278 9.961264 ATTTAAAAACCTGTAAACAAAGGGAAA 57.039 25.926 0.00 0.00 37.94 3.13
278 279 9.788889 TTTAAAAACCTGTAAACAAAGGGAAAA 57.211 25.926 0.00 0.00 37.94 2.29
279 280 7.915293 AAAAACCTGTAAACAAAGGGAAAAG 57.085 32.000 0.00 0.00 37.94 2.27
280 281 6.860790 AAACCTGTAAACAAAGGGAAAAGA 57.139 33.333 0.00 0.00 37.94 2.52
281 282 6.860790 AACCTGTAAACAAAGGGAAAAGAA 57.139 33.333 0.00 0.00 37.94 2.52
282 283 6.465439 ACCTGTAAACAAAGGGAAAAGAAG 57.535 37.500 0.00 0.00 37.94 2.85
283 284 6.192044 ACCTGTAAACAAAGGGAAAAGAAGA 58.808 36.000 0.00 0.00 37.94 2.87
284 285 6.096423 ACCTGTAAACAAAGGGAAAAGAAGAC 59.904 38.462 0.00 0.00 37.94 3.01
285 286 6.459670 TGTAAACAAAGGGAAAAGAAGACC 57.540 37.500 0.00 0.00 0.00 3.85
286 287 6.192044 TGTAAACAAAGGGAAAAGAAGACCT 58.808 36.000 0.00 0.00 34.04 3.85
287 288 7.348033 TGTAAACAAAGGGAAAAGAAGACCTA 58.652 34.615 0.00 0.00 31.88 3.08
288 289 6.961360 AAACAAAGGGAAAAGAAGACCTAG 57.039 37.500 0.00 0.00 31.88 3.02
289 290 5.906772 ACAAAGGGAAAAGAAGACCTAGA 57.093 39.130 0.00 0.00 31.88 2.43
290 291 6.262056 ACAAAGGGAAAAGAAGACCTAGAA 57.738 37.500 0.00 0.00 31.88 2.10
291 292 6.669631 ACAAAGGGAAAAGAAGACCTAGAAA 58.330 36.000 0.00 0.00 31.88 2.52
292 293 6.773200 ACAAAGGGAAAAGAAGACCTAGAAAG 59.227 38.462 0.00 0.00 31.88 2.62
293 294 6.765355 AAGGGAAAAGAAGACCTAGAAAGA 57.235 37.500 0.00 0.00 31.88 2.52
294 295 6.765355 AGGGAAAAGAAGACCTAGAAAGAA 57.235 37.500 0.00 0.00 0.00 2.52
295 296 7.336475 AGGGAAAAGAAGACCTAGAAAGAAT 57.664 36.000 0.00 0.00 0.00 2.40
296 297 7.398829 AGGGAAAAGAAGACCTAGAAAGAATC 58.601 38.462 0.00 0.00 0.00 2.52
297 298 7.017651 AGGGAAAAGAAGACCTAGAAAGAATCA 59.982 37.037 0.00 0.00 0.00 2.57
298 299 7.665974 GGGAAAAGAAGACCTAGAAAGAATCAA 59.334 37.037 0.00 0.00 0.00 2.57
299 300 9.237187 GGAAAAGAAGACCTAGAAAGAATCAAT 57.763 33.333 0.00 0.00 0.00 2.57
301 302 9.799106 AAAAGAAGACCTAGAAAGAATCAATGA 57.201 29.630 0.00 0.00 0.00 2.57
302 303 9.799106 AAAGAAGACCTAGAAAGAATCAATGAA 57.201 29.630 0.00 0.00 0.00 2.57
303 304 9.799106 AAGAAGACCTAGAAAGAATCAATGAAA 57.201 29.630 0.00 0.00 0.00 2.69
304 305 9.799106 AGAAGACCTAGAAAGAATCAATGAAAA 57.201 29.630 0.00 0.00 0.00 2.29
305 306 9.833182 GAAGACCTAGAAAGAATCAATGAAAAC 57.167 33.333 0.00 0.00 0.00 2.43
306 307 9.579932 AAGACCTAGAAAGAATCAATGAAAACT 57.420 29.630 0.00 0.00 0.00 2.66
307 308 9.007901 AGACCTAGAAAGAATCAATGAAAACTG 57.992 33.333 0.00 0.00 0.00 3.16
308 309 8.115490 ACCTAGAAAGAATCAATGAAAACTGG 57.885 34.615 0.00 0.00 0.00 4.00
309 310 7.725844 ACCTAGAAAGAATCAATGAAAACTGGT 59.274 33.333 0.00 0.00 0.00 4.00
310 311 8.025445 CCTAGAAAGAATCAATGAAAACTGGTG 58.975 37.037 0.00 0.00 0.00 4.17
311 312 7.587037 AGAAAGAATCAATGAAAACTGGTGA 57.413 32.000 0.00 0.00 0.00 4.02
312 313 8.010733 AGAAAGAATCAATGAAAACTGGTGAA 57.989 30.769 0.00 0.00 0.00 3.18
313 314 8.477256 AGAAAGAATCAATGAAAACTGGTGAAA 58.523 29.630 0.00 0.00 0.00 2.69
314 315 9.097257 GAAAGAATCAATGAAAACTGGTGAAAA 57.903 29.630 0.00 0.00 0.00 2.29
315 316 9.447157 AAAGAATCAATGAAAACTGGTGAAAAA 57.553 25.926 0.00 0.00 0.00 1.94
338 339 9.838975 AAAAACAAAGAAAACAATAAAAGCAGG 57.161 25.926 0.00 0.00 0.00 4.85
339 340 8.560355 AAACAAAGAAAACAATAAAAGCAGGT 57.440 26.923 0.00 0.00 0.00 4.00
340 341 9.660180 AAACAAAGAAAACAATAAAAGCAGGTA 57.340 25.926 0.00 0.00 0.00 3.08
341 342 9.660180 AACAAAGAAAACAATAAAAGCAGGTAA 57.340 25.926 0.00 0.00 0.00 2.85
342 343 9.660180 ACAAAGAAAACAATAAAAGCAGGTAAA 57.340 25.926 0.00 0.00 0.00 2.01
348 349 9.660180 AAAACAATAAAAGCAGGTAAAGAAACA 57.340 25.926 0.00 0.00 0.00 2.83
349 350 9.660180 AAACAATAAAAGCAGGTAAAGAAACAA 57.340 25.926 0.00 0.00 0.00 2.83
350 351 9.660180 AACAATAAAAGCAGGTAAAGAAACAAA 57.340 25.926 0.00 0.00 0.00 2.83
351 352 9.313118 ACAATAAAAGCAGGTAAAGAAACAAAG 57.687 29.630 0.00 0.00 0.00 2.77
352 353 8.764287 CAATAAAAGCAGGTAAAGAAACAAAGG 58.236 33.333 0.00 0.00 0.00 3.11
353 354 6.538945 AAAAGCAGGTAAAGAAACAAAGGA 57.461 33.333 0.00 0.00 0.00 3.36
354 355 6.538945 AAAGCAGGTAAAGAAACAAAGGAA 57.461 33.333 0.00 0.00 0.00 3.36
355 356 6.538945 AAGCAGGTAAAGAAACAAAGGAAA 57.461 33.333 0.00 0.00 0.00 3.13
356 357 5.902681 AGCAGGTAAAGAAACAAAGGAAAC 58.097 37.500 0.00 0.00 0.00 2.78
357 358 5.047847 GCAGGTAAAGAAACAAAGGAAACC 58.952 41.667 0.00 0.00 0.00 3.27
358 359 5.394773 GCAGGTAAAGAAACAAAGGAAACCA 60.395 40.000 0.00 0.00 0.00 3.67
359 360 6.273071 CAGGTAAAGAAACAAAGGAAACCAG 58.727 40.000 0.00 0.00 0.00 4.00
360 361 6.096282 CAGGTAAAGAAACAAAGGAAACCAGA 59.904 38.462 0.00 0.00 0.00 3.86
361 362 6.666113 AGGTAAAGAAACAAAGGAAACCAGAA 59.334 34.615 0.00 0.00 0.00 3.02
362 363 7.179516 AGGTAAAGAAACAAAGGAAACCAGAAA 59.820 33.333 0.00 0.00 0.00 2.52
363 364 7.820386 GGTAAAGAAACAAAGGAAACCAGAAAA 59.180 33.333 0.00 0.00 0.00 2.29
364 365 9.210329 GTAAAGAAACAAAGGAAACCAGAAAAA 57.790 29.630 0.00 0.00 0.00 1.94
365 366 7.905604 AAGAAACAAAGGAAACCAGAAAAAG 57.094 32.000 0.00 0.00 0.00 2.27
366 367 7.004555 AGAAACAAAGGAAACCAGAAAAAGT 57.995 32.000 0.00 0.00 0.00 2.66
367 368 8.129496 AGAAACAAAGGAAACCAGAAAAAGTA 57.871 30.769 0.00 0.00 0.00 2.24
368 369 8.251026 AGAAACAAAGGAAACCAGAAAAAGTAG 58.749 33.333 0.00 0.00 0.00 2.57
369 370 7.712204 AACAAAGGAAACCAGAAAAAGTAGA 57.288 32.000 0.00 0.00 0.00 2.59
370 371 7.712204 ACAAAGGAAACCAGAAAAAGTAGAA 57.288 32.000 0.00 0.00 0.00 2.10
371 372 8.129496 ACAAAGGAAACCAGAAAAAGTAGAAA 57.871 30.769 0.00 0.00 0.00 2.52
372 373 8.590204 ACAAAGGAAACCAGAAAAAGTAGAAAA 58.410 29.630 0.00 0.00 0.00 2.29
373 374 9.599866 CAAAGGAAACCAGAAAAAGTAGAAAAT 57.400 29.630 0.00 0.00 0.00 1.82
840 841 3.951979 AAAAACTGAAGTGAGCGAGTG 57.048 42.857 0.00 0.00 0.00 3.51
841 842 2.890808 AAACTGAAGTGAGCGAGTGA 57.109 45.000 0.00 0.00 0.00 3.41
842 843 2.890808 AACTGAAGTGAGCGAGTGAA 57.109 45.000 0.00 0.00 0.00 3.18
843 844 2.141535 ACTGAAGTGAGCGAGTGAAC 57.858 50.000 0.00 0.00 0.00 3.18
844 845 1.269831 ACTGAAGTGAGCGAGTGAACC 60.270 52.381 0.00 0.00 0.00 3.62
845 846 0.033504 TGAAGTGAGCGAGTGAACCC 59.966 55.000 0.00 0.00 0.00 4.11
846 847 1.006102 AAGTGAGCGAGTGAACCCG 60.006 57.895 0.00 0.00 0.00 5.28
851 852 4.272100 GCGAGTGAACCCGCTAAA 57.728 55.556 1.81 0.00 46.96 1.85
852 853 2.763651 GCGAGTGAACCCGCTAAAT 58.236 52.632 1.81 0.00 46.96 1.40
853 854 0.373716 GCGAGTGAACCCGCTAAATG 59.626 55.000 1.81 0.00 46.96 2.32
854 855 2.004583 CGAGTGAACCCGCTAAATGA 57.995 50.000 0.00 0.00 32.40 2.57
855 856 1.927174 CGAGTGAACCCGCTAAATGAG 59.073 52.381 0.00 0.00 32.40 2.90
856 857 2.674177 CGAGTGAACCCGCTAAATGAGT 60.674 50.000 0.00 0.00 32.40 3.41
857 858 2.930682 GAGTGAACCCGCTAAATGAGTC 59.069 50.000 0.00 0.00 32.40 3.36
858 859 1.659098 GTGAACCCGCTAAATGAGTCG 59.341 52.381 0.00 0.00 0.00 4.18
859 860 1.287425 GAACCCGCTAAATGAGTCGG 58.713 55.000 0.00 0.00 41.64 4.79
860 861 0.743345 AACCCGCTAAATGAGTCGGC 60.743 55.000 0.00 0.00 41.05 5.54
861 862 1.887707 CCCGCTAAATGAGTCGGCC 60.888 63.158 0.00 0.00 41.05 6.13
862 863 1.887707 CCGCTAAATGAGTCGGCCC 60.888 63.158 0.00 0.00 37.80 5.80
863 864 1.144057 CGCTAAATGAGTCGGCCCT 59.856 57.895 0.00 0.00 0.00 5.19
864 865 1.154205 CGCTAAATGAGTCGGCCCTG 61.154 60.000 0.00 0.00 0.00 4.45
865 866 0.178068 GCTAAATGAGTCGGCCCTGA 59.822 55.000 0.00 0.00 0.00 3.86
866 867 1.406887 GCTAAATGAGTCGGCCCTGAA 60.407 52.381 0.00 0.00 0.00 3.02
867 868 2.939640 GCTAAATGAGTCGGCCCTGAAA 60.940 50.000 0.00 0.00 0.00 2.69
868 869 1.826385 AAATGAGTCGGCCCTGAAAG 58.174 50.000 0.00 0.00 0.00 2.62
869 870 0.678048 AATGAGTCGGCCCTGAAAGC 60.678 55.000 0.00 0.00 0.00 3.51
875 876 3.365265 GGCCCTGAAAGCCGTGTG 61.365 66.667 0.00 0.00 41.41 3.82
876 877 2.281484 GCCCTGAAAGCCGTGTGA 60.281 61.111 0.00 0.00 0.00 3.58
877 878 2.328099 GCCCTGAAAGCCGTGTGAG 61.328 63.158 0.00 0.00 0.00 3.51
878 879 2.328099 CCCTGAAAGCCGTGTGAGC 61.328 63.158 0.00 0.00 0.00 4.26
879 880 1.302033 CCTGAAAGCCGTGTGAGCT 60.302 57.895 0.00 0.00 44.19 4.09
880 881 0.037326 CCTGAAAGCCGTGTGAGCTA 60.037 55.000 0.00 0.00 40.49 3.32
881 882 1.071605 CTGAAAGCCGTGTGAGCTAC 58.928 55.000 0.00 0.00 40.49 3.58
882 883 0.320421 TGAAAGCCGTGTGAGCTACC 60.320 55.000 0.00 0.00 40.49 3.18
883 884 1.003718 AAAGCCGTGTGAGCTACCC 60.004 57.895 0.00 0.00 40.49 3.69
884 885 1.481056 AAAGCCGTGTGAGCTACCCT 61.481 55.000 0.00 0.00 40.49 4.34
885 886 2.125512 GCCGTGTGAGCTACCCTG 60.126 66.667 0.00 0.00 0.00 4.45
886 887 2.646175 GCCGTGTGAGCTACCCTGA 61.646 63.158 0.00 0.00 0.00 3.86
887 888 1.972198 CCGTGTGAGCTACCCTGAA 59.028 57.895 0.00 0.00 0.00 3.02
888 889 0.108615 CCGTGTGAGCTACCCTGAAG 60.109 60.000 0.00 0.00 0.00 3.02
889 890 0.108615 CGTGTGAGCTACCCTGAAGG 60.109 60.000 0.00 0.00 43.78 3.46
890 891 1.267121 GTGTGAGCTACCCTGAAGGA 58.733 55.000 0.00 0.00 39.89 3.36
891 892 1.834263 GTGTGAGCTACCCTGAAGGAT 59.166 52.381 0.00 0.00 39.89 3.24
892 893 2.237392 GTGTGAGCTACCCTGAAGGATT 59.763 50.000 0.00 0.00 39.89 3.01
894 895 2.119495 TGAGCTACCCTGAAGGATTCC 58.881 52.381 0.00 0.00 46.93 3.01
895 896 1.418264 GAGCTACCCTGAAGGATTCCC 59.582 57.143 0.00 0.00 46.93 3.97
896 897 1.010170 AGCTACCCTGAAGGATTCCCT 59.990 52.381 0.00 0.00 46.93 4.20
897 898 1.418264 GCTACCCTGAAGGATTCCCTC 59.582 57.143 0.00 0.00 46.93 4.30
898 899 1.689273 CTACCCTGAAGGATTCCCTCG 59.311 57.143 0.00 0.00 46.93 4.63
899 900 1.147153 CCCTGAAGGATTCCCTCGC 59.853 63.158 0.00 0.00 46.93 5.03
900 901 1.227380 CCTGAAGGATTCCCTCGCG 60.227 63.158 0.00 0.00 46.93 5.87
901 902 1.517832 CTGAAGGATTCCCTCGCGT 59.482 57.895 5.77 0.00 46.93 6.01
902 903 0.807667 CTGAAGGATTCCCTCGCGTG 60.808 60.000 5.77 2.75 46.93 5.34
903 904 1.218316 GAAGGATTCCCTCGCGTGT 59.782 57.895 5.77 0.00 43.48 4.49
904 905 0.806492 GAAGGATTCCCTCGCGTGTC 60.806 60.000 5.77 0.00 43.48 3.67
905 906 1.541310 AAGGATTCCCTCGCGTGTCA 61.541 55.000 5.77 0.00 43.48 3.58
906 907 1.144057 GGATTCCCTCGCGTGTCAT 59.856 57.895 5.77 0.00 0.00 3.06
907 908 0.462047 GGATTCCCTCGCGTGTCATT 60.462 55.000 5.77 0.00 0.00 2.57
908 909 1.369625 GATTCCCTCGCGTGTCATTT 58.630 50.000 5.77 0.00 0.00 2.32
909 910 1.327764 GATTCCCTCGCGTGTCATTTC 59.672 52.381 5.77 0.00 0.00 2.17
910 911 0.034198 TTCCCTCGCGTGTCATTTCA 59.966 50.000 5.77 0.00 0.00 2.69
911 912 0.389817 TCCCTCGCGTGTCATTTCAG 60.390 55.000 5.77 0.00 0.00 3.02
912 913 1.361668 CCCTCGCGTGTCATTTCAGG 61.362 60.000 5.77 1.24 0.00 3.86
913 914 0.389817 CCTCGCGTGTCATTTCAGGA 60.390 55.000 5.77 0.00 0.00 3.86
914 915 0.716108 CTCGCGTGTCATTTCAGGAC 59.284 55.000 5.77 0.00 35.83 3.85
915 916 0.669318 TCGCGTGTCATTTCAGGACC 60.669 55.000 5.77 0.00 34.36 4.46
916 917 1.787847 GCGTGTCATTTCAGGACCG 59.212 57.895 0.00 0.00 34.36 4.79
917 918 0.949105 GCGTGTCATTTCAGGACCGT 60.949 55.000 0.00 0.00 34.36 4.83
918 919 1.068474 CGTGTCATTTCAGGACCGTC 58.932 55.000 0.00 0.00 34.36 4.79
919 920 1.336887 CGTGTCATTTCAGGACCGTCT 60.337 52.381 0.00 0.00 34.36 4.18
920 921 2.338500 GTGTCATTTCAGGACCGTCTC 58.662 52.381 0.00 0.00 34.36 3.36
921 922 1.967779 TGTCATTTCAGGACCGTCTCA 59.032 47.619 0.00 0.00 34.36 3.27
922 923 2.567169 TGTCATTTCAGGACCGTCTCAT 59.433 45.455 0.00 0.00 34.36 2.90
923 924 3.767131 TGTCATTTCAGGACCGTCTCATA 59.233 43.478 0.00 0.00 34.36 2.15
924 925 4.113354 GTCATTTCAGGACCGTCTCATAC 58.887 47.826 0.00 0.00 0.00 2.39
925 926 3.767131 TCATTTCAGGACCGTCTCATACA 59.233 43.478 0.00 0.00 0.00 2.29
926 927 4.405680 TCATTTCAGGACCGTCTCATACAT 59.594 41.667 0.00 0.00 0.00 2.29
927 928 3.801114 TTCAGGACCGTCTCATACATG 57.199 47.619 0.00 0.00 0.00 3.21
928 929 2.031870 TCAGGACCGTCTCATACATGG 58.968 52.381 0.00 0.00 0.00 3.66
929 930 1.757118 CAGGACCGTCTCATACATGGT 59.243 52.381 0.00 0.00 35.14 3.55
930 931 2.956333 CAGGACCGTCTCATACATGGTA 59.044 50.000 0.00 0.00 31.86 3.25
931 932 3.004839 CAGGACCGTCTCATACATGGTAG 59.995 52.174 0.00 0.00 31.86 3.18
932 933 3.117625 AGGACCGTCTCATACATGGTAGA 60.118 47.826 0.00 0.00 31.86 2.59
933 934 3.253677 GGACCGTCTCATACATGGTAGAG 59.746 52.174 0.00 0.80 31.86 2.43
934 935 3.884091 GACCGTCTCATACATGGTAGAGT 59.116 47.826 0.00 0.00 31.86 3.24
935 936 5.045012 ACCGTCTCATACATGGTAGAGTA 57.955 43.478 0.00 0.00 0.00 2.59
936 937 4.820716 ACCGTCTCATACATGGTAGAGTAC 59.179 45.833 0.00 0.00 0.00 2.73
937 938 4.820173 CCGTCTCATACATGGTAGAGTACA 59.180 45.833 0.00 0.00 0.00 2.90
938 939 5.298527 CCGTCTCATACATGGTAGAGTACAA 59.701 44.000 0.00 0.00 0.00 2.41
939 940 6.183360 CCGTCTCATACATGGTAGAGTACAAA 60.183 42.308 0.00 0.00 0.00 2.83
940 941 7.426410 CGTCTCATACATGGTAGAGTACAAAT 58.574 38.462 0.00 0.00 0.00 2.32
941 942 8.565416 CGTCTCATACATGGTAGAGTACAAATA 58.435 37.037 0.00 0.00 0.00 1.40
942 943 9.680315 GTCTCATACATGGTAGAGTACAAATAC 57.320 37.037 0.00 0.00 0.00 1.89
943 944 9.416284 TCTCATACATGGTAGAGTACAAATACA 57.584 33.333 0.00 0.00 33.30 2.29
946 947 9.129209 CATACATGGTAGAGTACAAATACATCG 57.871 37.037 0.00 0.00 33.30 3.84
947 948 7.108841 ACATGGTAGAGTACAAATACATCGT 57.891 36.000 0.00 0.00 33.30 3.73
948 949 7.553334 ACATGGTAGAGTACAAATACATCGTT 58.447 34.615 0.00 0.00 33.30 3.85
949 950 8.689061 ACATGGTAGAGTACAAATACATCGTTA 58.311 33.333 0.00 0.00 33.30 3.18
950 951 9.181805 CATGGTAGAGTACAAATACATCGTTAG 57.818 37.037 0.00 0.00 33.30 2.34
951 952 8.284945 TGGTAGAGTACAAATACATCGTTAGT 57.715 34.615 0.00 0.00 33.30 2.24
952 953 9.394767 TGGTAGAGTACAAATACATCGTTAGTA 57.605 33.333 0.00 0.00 33.30 1.82
1088 1089 3.322318 GAGTGGGTGGCCTCTCTGC 62.322 68.421 3.32 0.00 0.00 4.26
1123 1124 0.039527 CTTCAAACGGCGGGGAAAAG 60.040 55.000 13.24 4.40 0.00 2.27
1139 1140 0.974010 AAAGACATCCTACGCCGGGA 60.974 55.000 2.18 0.00 37.26 5.14
1184 1185 1.638388 CGCTTGCGGATCAAAGCAGA 61.638 55.000 20.37 8.66 44.72 4.26
1201 1202 4.445452 GCAGATGGCTTCTTCAAATTGA 57.555 40.909 0.00 0.00 40.25 2.57
1234 1235 0.332632 TGATTCAAAGGGAGCAGGGG 59.667 55.000 0.00 0.00 0.00 4.79
1274 1275 2.787473 TTCGCCAGGAAGAATCACAT 57.213 45.000 0.00 0.00 0.00 3.21
1277 1278 1.667724 CGCCAGGAAGAATCACATCAC 59.332 52.381 0.00 0.00 0.00 3.06
1289 1290 3.953712 TCACATCACGGTGAGTTATGT 57.046 42.857 16.84 12.48 45.59 2.29
1299 1300 7.660112 TCACGGTGAGTTATGTAGAGTTTAAA 58.340 34.615 6.76 0.00 0.00 1.52
1313 1314 5.066593 AGAGTTTAAAGGAGCAGTTTCTGG 58.933 41.667 0.00 0.00 31.21 3.86
1317 1318 3.425162 AAAGGAGCAGTTTCTGGTAGG 57.575 47.619 1.46 0.00 42.53 3.18
1345 1346 3.836146 TGCAATTCTTCTATGGATGGGG 58.164 45.455 0.00 0.00 0.00 4.96
1346 1347 3.462954 TGCAATTCTTCTATGGATGGGGA 59.537 43.478 0.00 0.00 0.00 4.81
1347 1348 4.106825 TGCAATTCTTCTATGGATGGGGAT 59.893 41.667 0.00 0.00 0.00 3.85
1397 1398 2.543777 TATGGCGTTGATTCTAGGGC 57.456 50.000 7.27 7.27 0.00 5.19
1415 1416 3.016736 GGGCGAAATTTGAGGAAGATGA 58.983 45.455 0.00 0.00 0.00 2.92
1434 1435 3.736094 TGAGATGTATTTGAGGGGAGGT 58.264 45.455 0.00 0.00 0.00 3.85
1450 1451 0.539051 AGGTTCTCAAGGATCGCAGG 59.461 55.000 0.00 0.00 0.00 4.85
1474 1475 4.636206 ACAAAGTGTGTTCTTCCTCTGTTC 59.364 41.667 0.00 0.00 37.01 3.18
1496 1497 2.080286 TCTACGCCTTTGCTCTGTTC 57.920 50.000 0.00 0.00 34.43 3.18
1512 1513 1.396648 TGTTCTTTGCGTGTGACACAG 59.603 47.619 16.74 9.59 33.40 3.66
1535 1536 2.783135 ACTGATGGCAAATCGAAGTGT 58.217 42.857 0.00 0.00 0.00 3.55
1560 1561 2.204090 ATGGACTTGGACGGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
1564 1565 2.446994 ACTTGGACGGGGGTGTCA 60.447 61.111 0.00 0.00 40.72 3.58
1568 1569 4.717313 GGACGGGGGTGTCAAGGC 62.717 72.222 0.00 0.00 40.72 4.35
1601 1602 3.595758 GGGTGCGCTTGCTGTGTT 61.596 61.111 9.73 0.00 40.12 3.32
1606 1607 3.726517 CGCTTGCTGTGTTCCCGG 61.727 66.667 0.00 0.00 0.00 5.73
1654 1655 3.628646 AAGGGCGTGGCTCCATCAC 62.629 63.158 0.00 0.00 0.00 3.06
1777 1778 1.146774 TGACCCCAAAGGCTTCATTCA 59.853 47.619 0.00 0.00 40.58 2.57
1791 1792 0.455633 CATTCAGTTTCGCTGCTGCC 60.456 55.000 10.24 0.00 44.66 4.85
1792 1793 1.915614 ATTCAGTTTCGCTGCTGCCG 61.916 55.000 10.24 5.61 44.66 5.69
1834 1835 0.036306 GAAGGGGAAGAACAAGGCGA 59.964 55.000 0.00 0.00 0.00 5.54
1855 1856 2.277373 CGAGCTCGAGTACGCACC 60.277 66.667 32.06 0.00 43.02 5.01
1860 1861 1.445582 CTCGAGTACGCACCCCAAC 60.446 63.158 3.62 0.00 39.58 3.77
2032 2033 1.300697 GTCACCAGCGAAGACCGTT 60.301 57.895 0.00 0.00 41.15 4.44
2038 2039 1.069090 AGCGAAGACCGTTGCTTCA 59.931 52.632 0.00 0.00 41.34 3.02
2178 2179 2.039418 CCCCTCGACTCCATCAACATA 58.961 52.381 0.00 0.00 0.00 2.29
2460 2461 2.283101 GGCATTCTGGGGCACACA 60.283 61.111 0.00 0.00 0.00 3.72
2514 2515 0.317479 GACAGCCTTCGTACACCACT 59.683 55.000 0.00 0.00 0.00 4.00
2680 2681 0.108992 GTCGTTGTCCGCCATGACTA 60.109 55.000 0.00 0.00 36.21 2.59
2772 2777 1.078567 CCTTCTCTGACTGGGCTGC 60.079 63.158 0.00 0.00 0.00 5.25
2844 3019 4.421515 CAGCTGGCCAGGAGGGTG 62.422 72.222 33.46 20.11 39.65 4.61
2855 3030 2.297129 GGAGGGTGAGCTGGCTCTT 61.297 63.158 20.97 6.65 43.12 2.85
2924 3099 1.065564 GCTGCTCTGAAGGGACTGATT 60.066 52.381 0.00 0.00 40.86 2.57
3028 3203 0.035630 GGGTCTGTTGATGCTGCTCT 60.036 55.000 0.00 0.00 0.00 4.09
3039 3214 3.126000 TGATGCTGCTCTATATCGTCTCG 59.874 47.826 0.00 0.00 0.00 4.04
3186 3361 2.097038 CGCTGGAGAAGGCTTCACG 61.097 63.158 27.70 18.04 0.00 4.35
3343 3519 2.031157 CGACGGGCAACAAGAAAAGATT 60.031 45.455 0.00 0.00 39.74 2.40
3349 3525 4.275689 GGGCAACAAGAAAAGATTTTTGGG 59.724 41.667 0.00 0.00 35.52 4.12
3350 3526 4.275689 GGCAACAAGAAAAGATTTTTGGGG 59.724 41.667 0.00 0.00 35.52 4.96
3465 3645 2.270527 GGGAGTGGAAGCTCAGGC 59.729 66.667 0.00 0.00 37.24 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.241367 GGTCAACATTTTTCCAAATATACGTCT 58.759 33.333 0.00 0.00 30.90 4.18
27 28 8.024285 TGGTCAACATTTTTCCAAATATACGTC 58.976 33.333 0.00 0.00 30.90 4.34
28 29 7.887381 TGGTCAACATTTTTCCAAATATACGT 58.113 30.769 0.00 0.00 30.90 3.57
29 30 7.487829 CCTGGTCAACATTTTTCCAAATATACG 59.512 37.037 0.00 0.00 30.90 3.06
30 31 8.311109 ACCTGGTCAACATTTTTCCAAATATAC 58.689 33.333 0.00 0.00 30.90 1.47
31 32 8.429237 ACCTGGTCAACATTTTTCCAAATATA 57.571 30.769 0.00 0.00 30.90 0.86
32 33 7.315066 ACCTGGTCAACATTTTTCCAAATAT 57.685 32.000 0.00 0.00 30.90 1.28
33 34 6.739331 ACCTGGTCAACATTTTTCCAAATA 57.261 33.333 0.00 0.00 30.90 1.40
34 35 5.628797 ACCTGGTCAACATTTTTCCAAAT 57.371 34.783 0.00 0.00 32.36 2.32
35 36 6.739331 ATACCTGGTCAACATTTTTCCAAA 57.261 33.333 0.63 0.00 0.00 3.28
36 37 6.739331 AATACCTGGTCAACATTTTTCCAA 57.261 33.333 0.63 0.00 0.00 3.53
37 38 6.739331 AAATACCTGGTCAACATTTTTCCA 57.261 33.333 0.63 0.00 0.00 3.53
38 39 9.549078 TTTTAAATACCTGGTCAACATTTTTCC 57.451 29.630 0.63 0.00 0.00 3.13
99 100 8.612619 GGTGAACATTTCTCAAATACACGATAT 58.387 33.333 0.00 0.00 33.57 1.63
100 101 7.201487 CGGTGAACATTTCTCAAATACACGATA 60.201 37.037 0.00 0.00 33.57 2.92
101 102 6.402118 CGGTGAACATTTCTCAAATACACGAT 60.402 38.462 0.00 0.00 33.57 3.73
102 103 5.107259 CGGTGAACATTTCTCAAATACACGA 60.107 40.000 0.00 0.00 33.57 4.35
103 104 5.079406 CGGTGAACATTTCTCAAATACACG 58.921 41.667 0.00 0.00 33.57 4.49
104 105 5.851177 CACGGTGAACATTTCTCAAATACAC 59.149 40.000 0.74 0.00 32.82 2.90
105 106 5.529430 ACACGGTGAACATTTCTCAAATACA 59.471 36.000 16.29 0.00 0.00 2.29
106 107 5.997385 ACACGGTGAACATTTCTCAAATAC 58.003 37.500 16.29 0.00 0.00 1.89
107 108 7.822334 AGATACACGGTGAACATTTCTCAAATA 59.178 33.333 16.29 0.00 0.00 1.40
108 109 6.655003 AGATACACGGTGAACATTTCTCAAAT 59.345 34.615 16.29 0.00 0.00 2.32
109 110 5.995282 AGATACACGGTGAACATTTCTCAAA 59.005 36.000 16.29 0.00 0.00 2.69
110 111 5.547465 AGATACACGGTGAACATTTCTCAA 58.453 37.500 16.29 0.00 0.00 3.02
111 112 5.147330 AGATACACGGTGAACATTTCTCA 57.853 39.130 16.29 0.00 0.00 3.27
112 113 7.591006 TTTAGATACACGGTGAACATTTCTC 57.409 36.000 16.29 0.00 0.00 2.87
113 114 7.972832 TTTTAGATACACGGTGAACATTTCT 57.027 32.000 16.29 5.07 0.00 2.52
167 168 9.701098 ACGTCAATTTTTCTTCAGTACATACTA 57.299 29.630 0.00 0.00 34.13 1.82
168 169 8.603242 ACGTCAATTTTTCTTCAGTACATACT 57.397 30.769 0.00 0.00 36.90 2.12
171 172 8.999431 ACATACGTCAATTTTTCTTCAGTACAT 58.001 29.630 0.00 0.00 0.00 2.29
172 173 8.373048 ACATACGTCAATTTTTCTTCAGTACA 57.627 30.769 0.00 0.00 0.00 2.90
249 250 9.961264 TCCCTTTGTTTACAGGTTTTTAAATTT 57.039 25.926 0.00 0.00 0.00 1.82
250 251 9.961264 TTCCCTTTGTTTACAGGTTTTTAAATT 57.039 25.926 0.00 0.00 0.00 1.82
251 252 9.961264 TTTCCCTTTGTTTACAGGTTTTTAAAT 57.039 25.926 0.00 0.00 0.00 1.40
252 253 9.788889 TTTTCCCTTTGTTTACAGGTTTTTAAA 57.211 25.926 0.00 0.00 0.00 1.52
253 254 9.438228 CTTTTCCCTTTGTTTACAGGTTTTTAA 57.562 29.630 0.00 0.00 0.00 1.52
254 255 8.813951 TCTTTTCCCTTTGTTTACAGGTTTTTA 58.186 29.630 0.00 0.00 0.00 1.52
255 256 7.681679 TCTTTTCCCTTTGTTTACAGGTTTTT 58.318 30.769 0.00 0.00 0.00 1.94
256 257 7.247456 TCTTTTCCCTTTGTTTACAGGTTTT 57.753 32.000 0.00 0.00 0.00 2.43
257 258 6.860790 TCTTTTCCCTTTGTTTACAGGTTT 57.139 33.333 0.00 0.00 0.00 3.27
258 259 6.666113 TCTTCTTTTCCCTTTGTTTACAGGTT 59.334 34.615 0.00 0.00 0.00 3.50
259 260 6.096423 GTCTTCTTTTCCCTTTGTTTACAGGT 59.904 38.462 0.00 0.00 0.00 4.00
260 261 6.461092 GGTCTTCTTTTCCCTTTGTTTACAGG 60.461 42.308 0.00 0.00 0.00 4.00
261 262 6.321435 AGGTCTTCTTTTCCCTTTGTTTACAG 59.679 38.462 0.00 0.00 0.00 2.74
262 263 6.192044 AGGTCTTCTTTTCCCTTTGTTTACA 58.808 36.000 0.00 0.00 0.00 2.41
263 264 6.710597 AGGTCTTCTTTTCCCTTTGTTTAC 57.289 37.500 0.00 0.00 0.00 2.01
264 265 7.808218 TCTAGGTCTTCTTTTCCCTTTGTTTA 58.192 34.615 0.00 0.00 0.00 2.01
265 266 6.669631 TCTAGGTCTTCTTTTCCCTTTGTTT 58.330 36.000 0.00 0.00 0.00 2.83
266 267 6.262056 TCTAGGTCTTCTTTTCCCTTTGTT 57.738 37.500 0.00 0.00 0.00 2.83
267 268 5.906772 TCTAGGTCTTCTTTTCCCTTTGT 57.093 39.130 0.00 0.00 0.00 2.83
268 269 6.998673 TCTTTCTAGGTCTTCTTTTCCCTTTG 59.001 38.462 0.00 0.00 0.00 2.77
269 270 7.150447 TCTTTCTAGGTCTTCTTTTCCCTTT 57.850 36.000 0.00 0.00 0.00 3.11
270 271 6.765355 TCTTTCTAGGTCTTCTTTTCCCTT 57.235 37.500 0.00 0.00 0.00 3.95
271 272 6.765355 TTCTTTCTAGGTCTTCTTTTCCCT 57.235 37.500 0.00 0.00 0.00 4.20
272 273 7.168905 TGATTCTTTCTAGGTCTTCTTTTCCC 58.831 38.462 0.00 0.00 0.00 3.97
273 274 8.622948 TTGATTCTTTCTAGGTCTTCTTTTCC 57.377 34.615 0.00 0.00 0.00 3.13
275 276 9.799106 TCATTGATTCTTTCTAGGTCTTCTTTT 57.201 29.630 0.00 0.00 0.00 2.27
276 277 9.799106 TTCATTGATTCTTTCTAGGTCTTCTTT 57.201 29.630 0.00 0.00 0.00 2.52
277 278 9.799106 TTTCATTGATTCTTTCTAGGTCTTCTT 57.201 29.630 0.00 0.00 0.00 2.52
278 279 9.799106 TTTTCATTGATTCTTTCTAGGTCTTCT 57.201 29.630 0.00 0.00 0.00 2.85
279 280 9.833182 GTTTTCATTGATTCTTTCTAGGTCTTC 57.167 33.333 0.00 0.00 0.00 2.87
280 281 9.579932 AGTTTTCATTGATTCTTTCTAGGTCTT 57.420 29.630 0.00 0.00 0.00 3.01
281 282 9.007901 CAGTTTTCATTGATTCTTTCTAGGTCT 57.992 33.333 0.00 0.00 0.00 3.85
282 283 8.239998 CCAGTTTTCATTGATTCTTTCTAGGTC 58.760 37.037 0.00 0.00 0.00 3.85
283 284 7.725844 ACCAGTTTTCATTGATTCTTTCTAGGT 59.274 33.333 0.00 0.00 0.00 3.08
284 285 8.025445 CACCAGTTTTCATTGATTCTTTCTAGG 58.975 37.037 0.00 0.00 0.00 3.02
285 286 8.786898 TCACCAGTTTTCATTGATTCTTTCTAG 58.213 33.333 0.00 0.00 0.00 2.43
286 287 8.690203 TCACCAGTTTTCATTGATTCTTTCTA 57.310 30.769 0.00 0.00 0.00 2.10
287 288 7.587037 TCACCAGTTTTCATTGATTCTTTCT 57.413 32.000 0.00 0.00 0.00 2.52
288 289 8.647143 TTTCACCAGTTTTCATTGATTCTTTC 57.353 30.769 0.00 0.00 0.00 2.62
289 290 9.447157 TTTTTCACCAGTTTTCATTGATTCTTT 57.553 25.926 0.00 0.00 0.00 2.52
312 313 9.838975 CCTGCTTTTATTGTTTTCTTTGTTTTT 57.161 25.926 0.00 0.00 0.00 1.94
313 314 9.008965 ACCTGCTTTTATTGTTTTCTTTGTTTT 57.991 25.926 0.00 0.00 0.00 2.43
314 315 8.560355 ACCTGCTTTTATTGTTTTCTTTGTTT 57.440 26.923 0.00 0.00 0.00 2.83
315 316 9.660180 TTACCTGCTTTTATTGTTTTCTTTGTT 57.340 25.926 0.00 0.00 0.00 2.83
316 317 9.660180 TTTACCTGCTTTTATTGTTTTCTTTGT 57.340 25.926 0.00 0.00 0.00 2.83
322 323 9.660180 TGTTTCTTTACCTGCTTTTATTGTTTT 57.340 25.926 0.00 0.00 0.00 2.43
323 324 9.660180 TTGTTTCTTTACCTGCTTTTATTGTTT 57.340 25.926 0.00 0.00 0.00 2.83
324 325 9.660180 TTTGTTTCTTTACCTGCTTTTATTGTT 57.340 25.926 0.00 0.00 0.00 2.83
325 326 9.313118 CTTTGTTTCTTTACCTGCTTTTATTGT 57.687 29.630 0.00 0.00 0.00 2.71
326 327 8.764287 CCTTTGTTTCTTTACCTGCTTTTATTG 58.236 33.333 0.00 0.00 0.00 1.90
327 328 8.700973 TCCTTTGTTTCTTTACCTGCTTTTATT 58.299 29.630 0.00 0.00 0.00 1.40
328 329 8.245195 TCCTTTGTTTCTTTACCTGCTTTTAT 57.755 30.769 0.00 0.00 0.00 1.40
329 330 7.648039 TCCTTTGTTTCTTTACCTGCTTTTA 57.352 32.000 0.00 0.00 0.00 1.52
330 331 6.538945 TCCTTTGTTTCTTTACCTGCTTTT 57.461 33.333 0.00 0.00 0.00 2.27
331 332 6.538945 TTCCTTTGTTTCTTTACCTGCTTT 57.461 33.333 0.00 0.00 0.00 3.51
332 333 6.338146 GTTTCCTTTGTTTCTTTACCTGCTT 58.662 36.000 0.00 0.00 0.00 3.91
333 334 5.163447 GGTTTCCTTTGTTTCTTTACCTGCT 60.163 40.000 0.00 0.00 0.00 4.24
334 335 5.047847 GGTTTCCTTTGTTTCTTTACCTGC 58.952 41.667 0.00 0.00 0.00 4.85
335 336 6.096282 TCTGGTTTCCTTTGTTTCTTTACCTG 59.904 38.462 0.00 0.00 0.00 4.00
336 337 6.192044 TCTGGTTTCCTTTGTTTCTTTACCT 58.808 36.000 0.00 0.00 0.00 3.08
337 338 6.459670 TCTGGTTTCCTTTGTTTCTTTACC 57.540 37.500 0.00 0.00 0.00 2.85
338 339 8.766000 TTTTCTGGTTTCCTTTGTTTCTTTAC 57.234 30.769 0.00 0.00 0.00 2.01
339 340 9.430623 CTTTTTCTGGTTTCCTTTGTTTCTTTA 57.569 29.630 0.00 0.00 0.00 1.85
340 341 7.936847 ACTTTTTCTGGTTTCCTTTGTTTCTTT 59.063 29.630 0.00 0.00 0.00 2.52
341 342 7.450074 ACTTTTTCTGGTTTCCTTTGTTTCTT 58.550 30.769 0.00 0.00 0.00 2.52
342 343 7.004555 ACTTTTTCTGGTTTCCTTTGTTTCT 57.995 32.000 0.00 0.00 0.00 2.52
343 344 8.248253 TCTACTTTTTCTGGTTTCCTTTGTTTC 58.752 33.333 0.00 0.00 0.00 2.78
344 345 8.129496 TCTACTTTTTCTGGTTTCCTTTGTTT 57.871 30.769 0.00 0.00 0.00 2.83
345 346 7.712204 TCTACTTTTTCTGGTTTCCTTTGTT 57.288 32.000 0.00 0.00 0.00 2.83
346 347 7.712204 TTCTACTTTTTCTGGTTTCCTTTGT 57.288 32.000 0.00 0.00 0.00 2.83
347 348 8.996024 TTTTCTACTTTTTCTGGTTTCCTTTG 57.004 30.769 0.00 0.00 0.00 2.77
820 821 3.531538 TCACTCGCTCACTTCAGTTTTT 58.468 40.909 0.00 0.00 0.00 1.94
821 822 3.179443 TCACTCGCTCACTTCAGTTTT 57.821 42.857 0.00 0.00 0.00 2.43
822 823 2.866762 GTTCACTCGCTCACTTCAGTTT 59.133 45.455 0.00 0.00 0.00 2.66
823 824 2.474816 GTTCACTCGCTCACTTCAGTT 58.525 47.619 0.00 0.00 0.00 3.16
824 825 1.269831 GGTTCACTCGCTCACTTCAGT 60.270 52.381 0.00 0.00 0.00 3.41
825 826 1.423395 GGTTCACTCGCTCACTTCAG 58.577 55.000 0.00 0.00 0.00 3.02
826 827 0.033504 GGGTTCACTCGCTCACTTCA 59.966 55.000 0.00 0.00 0.00 3.02
827 828 1.009389 CGGGTTCACTCGCTCACTTC 61.009 60.000 0.00 0.00 0.00 3.01
828 829 1.006102 CGGGTTCACTCGCTCACTT 60.006 57.895 0.00 0.00 0.00 3.16
829 830 2.651361 CGGGTTCACTCGCTCACT 59.349 61.111 0.00 0.00 0.00 3.41
835 836 1.927174 CTCATTTAGCGGGTTCACTCG 59.073 52.381 0.00 0.00 0.00 4.18
836 837 2.930682 GACTCATTTAGCGGGTTCACTC 59.069 50.000 0.00 0.00 0.00 3.51
837 838 2.674177 CGACTCATTTAGCGGGTTCACT 60.674 50.000 0.00 0.00 0.00 3.41
838 839 1.659098 CGACTCATTTAGCGGGTTCAC 59.341 52.381 0.00 0.00 0.00 3.18
839 840 1.404986 CCGACTCATTTAGCGGGTTCA 60.405 52.381 0.00 0.00 39.64 3.18
840 841 1.287425 CCGACTCATTTAGCGGGTTC 58.713 55.000 0.00 0.00 39.64 3.62
841 842 0.743345 GCCGACTCATTTAGCGGGTT 60.743 55.000 0.00 0.00 41.97 4.11
842 843 1.153429 GCCGACTCATTTAGCGGGT 60.153 57.895 0.00 0.00 41.97 5.28
843 844 1.887707 GGCCGACTCATTTAGCGGG 60.888 63.158 0.00 0.00 41.97 6.13
844 845 1.887707 GGGCCGACTCATTTAGCGG 60.888 63.158 0.00 0.00 43.49 5.52
845 846 1.144057 AGGGCCGACTCATTTAGCG 59.856 57.895 0.00 0.00 0.00 4.26
846 847 0.178068 TCAGGGCCGACTCATTTAGC 59.822 55.000 0.00 0.00 0.00 3.09
847 848 2.691409 TTCAGGGCCGACTCATTTAG 57.309 50.000 0.00 0.00 0.00 1.85
848 849 2.939640 GCTTTCAGGGCCGACTCATTTA 60.940 50.000 0.00 0.00 0.00 1.40
849 850 1.826385 CTTTCAGGGCCGACTCATTT 58.174 50.000 0.00 0.00 0.00 2.32
850 851 0.678048 GCTTTCAGGGCCGACTCATT 60.678 55.000 0.00 0.00 0.00 2.57
851 852 1.078143 GCTTTCAGGGCCGACTCAT 60.078 57.895 0.00 0.00 0.00 2.90
852 853 2.347490 GCTTTCAGGGCCGACTCA 59.653 61.111 0.00 0.00 0.00 3.41
853 854 2.436824 GGCTTTCAGGGCCGACTC 60.437 66.667 0.00 0.00 40.19 3.36
858 859 3.365265 CACACGGCTTTCAGGGCC 61.365 66.667 0.00 0.00 45.57 5.80
859 860 2.281484 TCACACGGCTTTCAGGGC 60.281 61.111 0.00 0.00 0.00 5.19
860 861 2.328099 GCTCACACGGCTTTCAGGG 61.328 63.158 0.00 0.00 0.00 4.45
861 862 0.037326 TAGCTCACACGGCTTTCAGG 60.037 55.000 0.00 0.00 40.74 3.86
862 863 1.071605 GTAGCTCACACGGCTTTCAG 58.928 55.000 0.00 0.00 40.74 3.02
863 864 0.320421 GGTAGCTCACACGGCTTTCA 60.320 55.000 0.00 0.00 40.74 2.69
864 865 1.019805 GGGTAGCTCACACGGCTTTC 61.020 60.000 0.00 0.00 40.74 2.62
865 866 1.003718 GGGTAGCTCACACGGCTTT 60.004 57.895 0.00 0.00 40.74 3.51
866 867 1.913762 AGGGTAGCTCACACGGCTT 60.914 57.895 0.00 0.00 40.74 4.35
867 868 2.283966 AGGGTAGCTCACACGGCT 60.284 61.111 0.00 0.00 43.02 5.52
868 869 2.125512 CAGGGTAGCTCACACGGC 60.126 66.667 0.00 0.00 34.84 5.68
869 870 0.108615 CTTCAGGGTAGCTCACACGG 60.109 60.000 0.00 0.00 34.84 4.94
870 871 0.108615 CCTTCAGGGTAGCTCACACG 60.109 60.000 0.00 0.00 34.84 4.49
871 872 1.267121 TCCTTCAGGGTAGCTCACAC 58.733 55.000 0.00 0.00 36.25 3.82
872 873 2.254152 ATCCTTCAGGGTAGCTCACA 57.746 50.000 0.00 0.00 36.25 3.58
873 874 2.158885 GGAATCCTTCAGGGTAGCTCAC 60.159 54.545 0.00 0.00 36.25 3.51
874 875 2.119495 GGAATCCTTCAGGGTAGCTCA 58.881 52.381 0.00 0.00 36.25 4.26
875 876 1.418264 GGGAATCCTTCAGGGTAGCTC 59.582 57.143 0.00 0.00 36.25 4.09
876 877 1.010170 AGGGAATCCTTCAGGGTAGCT 59.990 52.381 0.00 0.00 41.56 3.32
877 878 1.418264 GAGGGAATCCTTCAGGGTAGC 59.582 57.143 6.53 0.00 45.05 3.58
878 879 1.689273 CGAGGGAATCCTTCAGGGTAG 59.311 57.143 12.03 0.00 45.05 3.18
879 880 1.789523 CGAGGGAATCCTTCAGGGTA 58.210 55.000 12.03 0.00 45.05 3.69
880 881 1.627297 GCGAGGGAATCCTTCAGGGT 61.627 60.000 12.03 0.00 45.05 4.34
881 882 1.147153 GCGAGGGAATCCTTCAGGG 59.853 63.158 12.03 0.00 45.05 4.45
882 883 1.227380 CGCGAGGGAATCCTTCAGG 60.227 63.158 12.03 0.00 45.05 3.86
883 884 0.807667 CACGCGAGGGAATCCTTCAG 60.808 60.000 15.93 7.20 45.05 3.02
884 885 1.218047 CACGCGAGGGAATCCTTCA 59.782 57.895 15.93 0.00 45.05 3.02
885 886 0.806492 GACACGCGAGGGAATCCTTC 60.806 60.000 15.93 0.71 45.05 3.46
886 887 1.218316 GACACGCGAGGGAATCCTT 59.782 57.895 15.93 0.00 45.05 3.36
888 889 0.462047 AATGACACGCGAGGGAATCC 60.462 55.000 15.93 0.00 38.45 3.01
889 890 1.327764 GAAATGACACGCGAGGGAATC 59.672 52.381 15.93 0.00 38.45 2.52
890 891 1.338674 TGAAATGACACGCGAGGGAAT 60.339 47.619 15.93 0.00 38.45 3.01
891 892 0.034198 TGAAATGACACGCGAGGGAA 59.966 50.000 15.93 0.00 38.45 3.97
892 893 0.389817 CTGAAATGACACGCGAGGGA 60.390 55.000 15.93 0.00 38.45 4.20
893 894 1.361668 CCTGAAATGACACGCGAGGG 61.362 60.000 15.93 4.07 43.28 4.30
894 895 0.389817 TCCTGAAATGACACGCGAGG 60.390 55.000 15.93 5.60 0.00 4.63
895 896 0.716108 GTCCTGAAATGACACGCGAG 59.284 55.000 15.93 7.88 31.29 5.03
896 897 0.669318 GGTCCTGAAATGACACGCGA 60.669 55.000 15.93 0.00 32.70 5.87
897 898 1.787847 GGTCCTGAAATGACACGCG 59.212 57.895 3.53 3.53 32.70 6.01
898 899 0.949105 ACGGTCCTGAAATGACACGC 60.949 55.000 0.00 0.00 32.70 5.34
899 900 1.068474 GACGGTCCTGAAATGACACG 58.932 55.000 0.00 0.00 32.70 4.49
900 901 2.288825 TGAGACGGTCCTGAAATGACAC 60.289 50.000 4.14 0.00 32.70 3.67
901 902 1.967779 TGAGACGGTCCTGAAATGACA 59.032 47.619 4.14 0.00 32.70 3.58
902 903 2.743636 TGAGACGGTCCTGAAATGAC 57.256 50.000 4.14 0.00 0.00 3.06
903 904 3.767131 TGTATGAGACGGTCCTGAAATGA 59.233 43.478 4.14 0.00 0.00 2.57
904 905 4.123497 TGTATGAGACGGTCCTGAAATG 57.877 45.455 4.14 0.00 0.00 2.32
905 906 4.443457 CCATGTATGAGACGGTCCTGAAAT 60.443 45.833 4.14 0.00 0.00 2.17
906 907 3.118775 CCATGTATGAGACGGTCCTGAAA 60.119 47.826 4.14 0.00 0.00 2.69
907 908 2.430694 CCATGTATGAGACGGTCCTGAA 59.569 50.000 4.14 0.00 0.00 3.02
908 909 2.031870 CCATGTATGAGACGGTCCTGA 58.968 52.381 4.14 0.00 0.00 3.86
909 910 1.757118 ACCATGTATGAGACGGTCCTG 59.243 52.381 4.14 0.00 0.00 3.86
910 911 2.160721 ACCATGTATGAGACGGTCCT 57.839 50.000 4.14 0.00 0.00 3.85
911 912 3.220110 TCTACCATGTATGAGACGGTCC 58.780 50.000 4.14 0.00 0.00 4.46
912 913 3.884091 ACTCTACCATGTATGAGACGGTC 59.116 47.826 0.00 0.00 0.00 4.79
913 914 3.899726 ACTCTACCATGTATGAGACGGT 58.100 45.455 11.39 0.00 0.00 4.83
914 915 4.820173 TGTACTCTACCATGTATGAGACGG 59.180 45.833 11.39 0.00 0.00 4.79
915 916 6.373186 TTGTACTCTACCATGTATGAGACG 57.627 41.667 11.39 0.00 0.00 4.18
916 917 9.680315 GTATTTGTACTCTACCATGTATGAGAC 57.320 37.037 11.39 7.11 0.00 3.36
917 918 9.416284 TGTATTTGTACTCTACCATGTATGAGA 57.584 33.333 11.39 0.00 0.00 3.27
920 921 9.129209 CGATGTATTTGTACTCTACCATGTATG 57.871 37.037 0.00 0.00 0.00 2.39
921 922 8.857098 ACGATGTATTTGTACTCTACCATGTAT 58.143 33.333 0.00 0.00 0.00 2.29
922 923 8.229253 ACGATGTATTTGTACTCTACCATGTA 57.771 34.615 0.00 0.00 0.00 2.29
923 924 7.108841 ACGATGTATTTGTACTCTACCATGT 57.891 36.000 0.00 0.00 0.00 3.21
924 925 9.181805 CTAACGATGTATTTGTACTCTACCATG 57.818 37.037 0.00 0.00 0.00 3.66
925 926 8.910944 ACTAACGATGTATTTGTACTCTACCAT 58.089 33.333 0.00 0.00 0.00 3.55
926 927 8.284945 ACTAACGATGTATTTGTACTCTACCA 57.715 34.615 0.00 0.00 0.00 3.25
930 931 7.912250 CGGTTACTAACGATGTATTTGTACTCT 59.088 37.037 0.00 0.00 0.00 3.24
931 932 7.910162 TCGGTTACTAACGATGTATTTGTACTC 59.090 37.037 0.00 0.00 33.69 2.59
932 933 7.698130 GTCGGTTACTAACGATGTATTTGTACT 59.302 37.037 0.00 0.00 41.53 2.73
933 934 7.698130 AGTCGGTTACTAACGATGTATTTGTAC 59.302 37.037 0.00 0.00 41.53 2.90
934 935 7.761409 AGTCGGTTACTAACGATGTATTTGTA 58.239 34.615 0.00 0.00 41.53 2.41
935 936 6.624423 AGTCGGTTACTAACGATGTATTTGT 58.376 36.000 0.00 0.00 41.53 2.83
936 937 7.096722 GCTAGTCGGTTACTAACGATGTATTTG 60.097 40.741 0.00 0.00 40.21 2.32
937 938 6.914757 GCTAGTCGGTTACTAACGATGTATTT 59.085 38.462 0.00 0.00 40.21 1.40
938 939 6.038603 TGCTAGTCGGTTACTAACGATGTATT 59.961 38.462 0.00 0.00 40.21 1.89
939 940 5.528690 TGCTAGTCGGTTACTAACGATGTAT 59.471 40.000 0.00 0.00 40.21 2.29
940 941 4.875536 TGCTAGTCGGTTACTAACGATGTA 59.124 41.667 0.00 0.00 40.21 2.29
941 942 3.691118 TGCTAGTCGGTTACTAACGATGT 59.309 43.478 0.00 0.00 40.21 3.06
942 943 4.033684 GTGCTAGTCGGTTACTAACGATG 58.966 47.826 0.00 0.00 40.21 3.84
943 944 3.242543 CGTGCTAGTCGGTTACTAACGAT 60.243 47.826 0.00 0.00 43.15 3.73
944 945 2.094258 CGTGCTAGTCGGTTACTAACGA 59.906 50.000 0.00 0.00 43.15 3.85
945 946 2.434761 CGTGCTAGTCGGTTACTAACG 58.565 52.381 0.00 0.00 40.21 3.18
946 947 2.180397 GCGTGCTAGTCGGTTACTAAC 58.820 52.381 10.39 0.00 40.21 2.34
947 948 1.202065 CGCGTGCTAGTCGGTTACTAA 60.202 52.381 0.00 0.00 40.21 2.24
948 949 0.374758 CGCGTGCTAGTCGGTTACTA 59.625 55.000 0.00 0.00 39.80 1.82
949 950 1.136147 CGCGTGCTAGTCGGTTACT 59.864 57.895 0.00 0.00 42.62 2.24
950 951 2.502965 GCGCGTGCTAGTCGGTTAC 61.503 63.158 15.02 0.00 38.39 2.50
951 952 2.202518 GCGCGTGCTAGTCGGTTA 60.203 61.111 15.02 0.00 38.39 2.85
1088 1089 0.321122 GAAGGTGCTCCACTCCACAG 60.321 60.000 7.70 0.00 34.40 3.66
1123 1124 1.797211 CTCTCCCGGCGTAGGATGTC 61.797 65.000 6.01 0.00 31.48 3.06
1139 1140 0.032615 ACAGCCTTCCGGATCTCTCT 60.033 55.000 4.15 0.00 0.00 3.10
1170 1171 1.358046 GCCATCTGCTTTGATCCGC 59.642 57.895 0.00 0.00 36.87 5.54
1201 1202 6.125029 CCTTTGAATCAGTACCAGATGGATT 58.875 40.000 5.72 0.00 38.94 3.01
1274 1275 5.717078 AAACTCTACATAACTCACCGTGA 57.283 39.130 0.29 0.29 0.00 4.35
1277 1278 7.318141 TCCTTTAAACTCTACATAACTCACCG 58.682 38.462 0.00 0.00 0.00 4.94
1289 1290 6.183361 ACCAGAAACTGCTCCTTTAAACTCTA 60.183 38.462 0.00 0.00 0.00 2.43
1299 1300 2.031495 ACCTACCAGAAACTGCTCCT 57.969 50.000 0.00 0.00 0.00 3.69
1313 1314 9.736023 CCATAGAAGAATTGCAAATTAACCTAC 57.264 33.333 1.71 0.00 0.00 3.18
1317 1318 9.252962 CCATCCATAGAAGAATTGCAAATTAAC 57.747 33.333 1.71 0.00 0.00 2.01
1345 1346 1.821088 ACCCCACTAGAATCCCCATC 58.179 55.000 0.00 0.00 0.00 3.51
1346 1347 3.448277 TTACCCCACTAGAATCCCCAT 57.552 47.619 0.00 0.00 0.00 4.00
1347 1348 2.974285 TTACCCCACTAGAATCCCCA 57.026 50.000 0.00 0.00 0.00 4.96
1381 1382 0.461339 TTCGCCCTAGAATCAACGCC 60.461 55.000 0.00 0.00 0.00 5.68
1397 1398 6.674694 ACATCTCATCTTCCTCAAATTTCG 57.325 37.500 0.00 0.00 0.00 3.46
1415 1416 4.375313 AGAACCTCCCCTCAAATACATCT 58.625 43.478 0.00 0.00 0.00 2.90
1434 1435 1.266178 TGTCCTGCGATCCTTGAGAA 58.734 50.000 0.00 0.00 0.00 2.87
1450 1451 4.192317 ACAGAGGAAGAACACACTTTGTC 58.808 43.478 0.00 0.00 37.51 3.18
1496 1497 1.013596 TTCCTGTGTCACACGCAAAG 58.986 50.000 2.82 0.00 38.24 2.77
1512 1513 2.749621 ACTTCGATTTGCCATCAGTTCC 59.250 45.455 0.00 0.00 0.00 3.62
1529 1530 4.180057 CAAGTCCATCTCAGCTACACTTC 58.820 47.826 0.00 0.00 0.00 3.01
1535 1536 1.751351 CGTCCAAGTCCATCTCAGCTA 59.249 52.381 0.00 0.00 0.00 3.32
1560 1561 2.359850 GTGCCCGATGCCTTGACA 60.360 61.111 0.00 0.00 40.16 3.58
1564 1565 3.650950 ACTGGTGCCCGATGCCTT 61.651 61.111 0.00 0.00 40.16 4.35
1568 1569 2.124983 CCTCACTGGTGCCCGATG 60.125 66.667 0.00 0.00 0.00 3.84
1663 1664 3.771160 GATCGCCCCACCACTCGT 61.771 66.667 0.00 0.00 0.00 4.18
1677 1678 2.102252 GGATATCTGCATCTCCCCGATC 59.898 54.545 2.05 0.00 0.00 3.69
1803 1804 0.918983 TCCCCTTCCTGCATAGTTGG 59.081 55.000 0.00 0.00 0.00 3.77
1855 1856 0.107897 TTGATGACGATCGGGTTGGG 60.108 55.000 20.98 0.00 0.00 4.12
1860 1861 0.530650 CCAGGTTGATGACGATCGGG 60.531 60.000 20.98 2.55 0.00 5.14
1908 1909 4.326227 ACCCGGCCCACCACTAGA 62.326 66.667 0.00 0.00 34.57 2.43
1951 1952 3.470567 CTCGTTGACGACCAGCGC 61.471 66.667 0.00 0.00 46.89 5.92
2032 2033 5.178096 TCCTTAAAGGTGATGATGAAGCA 57.822 39.130 0.00 0.00 36.53 3.91
2038 2039 3.718956 CCCTCCTCCTTAAAGGTGATGAT 59.281 47.826 0.00 0.00 37.69 2.45
2178 2179 1.622499 CCCCCAGATTTGAGCCCAT 59.378 57.895 0.00 0.00 0.00 4.00
2370 2371 1.176527 CAATTGTCTTGCCATCCGGT 58.823 50.000 0.00 0.00 33.28 5.28
2460 2461 1.961793 TGTTGCAGAAAGTAGCCGTT 58.038 45.000 0.00 0.00 0.00 4.44
2753 2754 1.078567 CAGCCCAGTCAGAGAAGGC 60.079 63.158 0.00 0.00 44.20 4.35
2754 2755 1.078567 GCAGCCCAGTCAGAGAAGG 60.079 63.158 0.00 0.00 0.00 3.46
2844 3019 1.474855 GGATTCCAGAAGAGCCAGCTC 60.475 57.143 11.78 11.78 43.03 4.09
2855 3030 2.366590 CACTCCATCATCGGATTCCAGA 59.633 50.000 3.09 1.76 33.56 3.86
2901 3076 1.744741 GTCCCTTCAGAGCAGCAGC 60.745 63.158 0.00 0.00 42.56 5.25
2902 3077 0.391395 CAGTCCCTTCAGAGCAGCAG 60.391 60.000 0.00 0.00 0.00 4.24
2903 3078 0.833409 TCAGTCCCTTCAGAGCAGCA 60.833 55.000 0.00 0.00 0.00 4.41
2904 3079 0.540923 ATCAGTCCCTTCAGAGCAGC 59.459 55.000 0.00 0.00 0.00 5.25
2905 3080 3.703556 TCTAATCAGTCCCTTCAGAGCAG 59.296 47.826 0.00 0.00 0.00 4.24
2924 3099 2.470990 TCTTGCCCATCTTCAGCTCTA 58.529 47.619 0.00 0.00 0.00 2.43
3186 3361 1.671901 CGTTCCTCCTGCTCCTCTCC 61.672 65.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.