Multiple sequence alignment - TraesCS5A01G277400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G277400 chr5A 100.000 3383 0 0 1 3383 487324449 487327831 0.000000e+00 6248.0
1 TraesCS5A01G277400 chr5A 89.821 894 56 15 2303 3176 569461893 569462771 0.000000e+00 1114.0
2 TraesCS5A01G277400 chr5A 94.970 656 31 2 1 654 502935284 502934629 0.000000e+00 1027.0
3 TraesCS5A01G277400 chr5A 94.985 658 28 3 1 653 698192154 698192811 0.000000e+00 1027.0
4 TraesCS5A01G277400 chr5A 94.809 655 32 2 1 654 15927147 15926494 0.000000e+00 1020.0
5 TraesCS5A01G277400 chr5A 90.929 463 29 9 2324 2779 46282308 46281852 8.030000e-171 610.0
6 TraesCS5A01G277400 chr5A 76.990 804 148 22 1103 1896 510464483 510465259 3.120000e-115 425.0
7 TraesCS5A01G277400 chr5A 94.231 104 5 1 2224 2327 46282624 46282522 1.260000e-34 158.0
8 TraesCS5A01G277400 chr5A 90.909 88 7 1 669 756 487309914 487310000 2.130000e-22 117.0
9 TraesCS5A01G277400 chr5D 92.587 1241 59 6 748 1967 385417159 385418387 0.000000e+00 1751.0
10 TraesCS5A01G277400 chr5D 88.205 195 19 3 3190 3380 415722089 415722283 2.630000e-56 230.0
11 TraesCS5A01G277400 chr5B 91.278 1158 49 15 837 1967 462711640 462712772 0.000000e+00 1531.0
12 TraesCS5A01G277400 chr5B 77.233 795 139 24 1114 1896 482418244 482417480 8.670000e-116 427.0
13 TraesCS5A01G277400 chr5B 93.333 225 15 0 1998 2222 437562214 437561990 1.950000e-87 333.0
14 TraesCS5A01G277400 chr1B 92.937 892 51 9 2292 3177 624728336 624729221 0.000000e+00 1288.0
15 TraesCS5A01G277400 chr1B 94.665 656 33 2 1 654 681023464 681022809 0.000000e+00 1016.0
16 TraesCS5A01G277400 chr1B 78.676 680 95 29 2525 3177 135258540 135259196 1.130000e-109 407.0
17 TraesCS5A01G277400 chr1B 94.048 84 5 0 2224 2307 624728238 624728321 9.850000e-26 128.0
18 TraesCS5A01G277400 chr1B 85.246 122 17 1 2224 2344 646919458 646919579 1.270000e-24 124.0
19 TraesCS5A01G277400 chr1B 93.023 86 5 1 674 759 673600932 673600848 1.270000e-24 124.0
20 TraesCS5A01G277400 chr6B 93.240 858 47 7 2321 3174 134813329 134814179 0.000000e+00 1253.0
21 TraesCS5A01G277400 chr6B 94.833 658 30 3 1 654 704553676 704553019 0.000000e+00 1024.0
22 TraesCS5A01G277400 chr6B 92.735 234 14 3 1993 2224 75939923 75939691 5.410000e-88 335.0
23 TraesCS5A01G277400 chr6B 93.401 197 10 1 3190 3383 75939683 75939487 4.270000e-74 289.0
24 TraesCS5A01G277400 chr6B 92.308 104 7 1 2215 2317 134813006 134813109 2.720000e-31 147.0
25 TraesCS5A01G277400 chr6B 91.209 91 7 1 669 759 678254542 678254453 4.580000e-24 122.0
26 TraesCS5A01G277400 chr7B 89.223 965 72 17 2224 3177 548074630 548075573 0.000000e+00 1177.0
27 TraesCS5A01G277400 chr7B 93.902 82 5 0 669 750 22442977 22442896 1.270000e-24 124.0
28 TraesCS5A01G277400 chr1A 89.698 893 59 15 2303 3177 512662077 512661200 0.000000e+00 1109.0
29 TraesCS5A01G277400 chr1A 95.593 658 25 3 1 654 554675541 554676198 0.000000e+00 1051.0
30 TraesCS5A01G277400 chr2A 95.115 655 30 2 1 654 964470 963817 0.000000e+00 1031.0
31 TraesCS5A01G277400 chr2A 94.977 657 30 3 1 654 424526325 424525669 0.000000e+00 1027.0
32 TraesCS5A01G277400 chr2A 90.016 641 41 15 2223 2849 32263551 32262920 0.000000e+00 808.0
33 TraesCS5A01G277400 chr2A 92.349 562 32 6 2226 2782 109327974 109327419 0.000000e+00 789.0
34 TraesCS5A01G277400 chr3B 94.681 658 31 3 1 654 13917085 13917742 0.000000e+00 1018.0
35 TraesCS5A01G277400 chr3B 94.186 86 4 1 674 759 14532479 14532563 2.740000e-26 130.0
36 TraesCS5A01G277400 chr3B 93.023 86 5 1 674 759 14538807 14538891 1.270000e-24 124.0
37 TraesCS5A01G277400 chr3B 91.954 87 6 1 673 759 225466795 225466710 1.650000e-23 121.0
38 TraesCS5A01G277400 chr7A 92.890 436 18 9 2224 2650 90331155 90330724 3.710000e-174 621.0
39 TraesCS5A01G277400 chr7A 81.343 134 21 4 3235 3366 243652924 243653055 4.620000e-19 106.0
40 TraesCS5A01G277400 chr1D 80.205 682 88 31 2524 3177 104285474 104286136 5.110000e-128 468.0
41 TraesCS5A01G277400 chr1D 90.833 360 18 11 2489 2836 418768169 418768525 5.110000e-128 468.0
42 TraesCS5A01G277400 chr1D 86.508 378 26 10 2828 3186 418768937 418769308 3.160000e-105 392.0
43 TraesCS5A01G277400 chr1D 91.237 194 13 2 2224 2414 418767967 418768159 9.310000e-66 261.0
44 TraesCS5A01G277400 chr1D 86.066 122 16 1 2224 2344 468251295 468251416 2.740000e-26 130.0
45 TraesCS5A01G277400 chr3D 79.381 679 87 29 2525 3180 404972124 404972772 2.410000e-116 429.0
46 TraesCS5A01G277400 chr6D 96.154 234 7 2 1993 2224 36227752 36227519 6.850000e-102 381.0
47 TraesCS5A01G277400 chr6D 93.467 199 8 2 3190 3383 36227511 36227313 1.190000e-74 291.0
48 TraesCS5A01G277400 chr6A 93.939 231 12 2 1993 2222 40224692 40224463 6.950000e-92 348.0
49 TraesCS5A01G277400 chr6A 89.474 228 18 4 1998 2221 600896683 600896458 1.990000e-72 283.0
50 TraesCS5A01G277400 chr6A 91.960 199 11 4 3190 3383 40224453 40224255 1.200000e-69 274.0
51 TraesCS5A01G277400 chr2B 91.457 199 12 1 3190 3383 22727711 22727909 5.560000e-68 268.0
52 TraesCS5A01G277400 chr2B 95.098 102 5 0 1998 2099 22727516 22727617 9.710000e-36 161.0
53 TraesCS5A01G277400 chr2B 94.253 87 4 1 2139 2224 22727617 22727703 7.620000e-27 132.0
54 TraesCS5A01G277400 chr2B 100.000 33 0 0 1998 2030 772120741 772120709 1.010000e-05 62.1
55 TraesCS5A01G277400 chr3A 86.538 156 17 3 3023 3176 433859516 433859669 5.810000e-38 169.0
56 TraesCS5A01G277400 chrUn 92.941 85 5 1 674 758 269563954 269564037 4.580000e-24 122.0
57 TraesCS5A01G277400 chrUn 91.111 90 5 3 669 757 361072659 361072572 5.930000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G277400 chr5A 487324449 487327831 3382 False 6248.000000 6248 100.0000 1 3383 1 chr5A.!!$F2 3382
1 TraesCS5A01G277400 chr5A 569461893 569462771 878 False 1114.000000 1114 89.8210 2303 3176 1 chr5A.!!$F4 873
2 TraesCS5A01G277400 chr5A 502934629 502935284 655 True 1027.000000 1027 94.9700 1 654 1 chr5A.!!$R2 653
3 TraesCS5A01G277400 chr5A 698192154 698192811 657 False 1027.000000 1027 94.9850 1 653 1 chr5A.!!$F5 652
4 TraesCS5A01G277400 chr5A 15926494 15927147 653 True 1020.000000 1020 94.8090 1 654 1 chr5A.!!$R1 653
5 TraesCS5A01G277400 chr5A 510464483 510465259 776 False 425.000000 425 76.9900 1103 1896 1 chr5A.!!$F3 793
6 TraesCS5A01G277400 chr5A 46281852 46282624 772 True 384.000000 610 92.5800 2224 2779 2 chr5A.!!$R3 555
7 TraesCS5A01G277400 chr5D 385417159 385418387 1228 False 1751.000000 1751 92.5870 748 1967 1 chr5D.!!$F1 1219
8 TraesCS5A01G277400 chr5B 462711640 462712772 1132 False 1531.000000 1531 91.2780 837 1967 1 chr5B.!!$F1 1130
9 TraesCS5A01G277400 chr5B 482417480 482418244 764 True 427.000000 427 77.2330 1114 1896 1 chr5B.!!$R2 782
10 TraesCS5A01G277400 chr1B 681022809 681023464 655 True 1016.000000 1016 94.6650 1 654 1 chr1B.!!$R2 653
11 TraesCS5A01G277400 chr1B 624728238 624729221 983 False 708.000000 1288 93.4925 2224 3177 2 chr1B.!!$F3 953
12 TraesCS5A01G277400 chr1B 135258540 135259196 656 False 407.000000 407 78.6760 2525 3177 1 chr1B.!!$F1 652
13 TraesCS5A01G277400 chr6B 704553019 704553676 657 True 1024.000000 1024 94.8330 1 654 1 chr6B.!!$R2 653
14 TraesCS5A01G277400 chr6B 134813006 134814179 1173 False 700.000000 1253 92.7740 2215 3174 2 chr6B.!!$F1 959
15 TraesCS5A01G277400 chr7B 548074630 548075573 943 False 1177.000000 1177 89.2230 2224 3177 1 chr7B.!!$F1 953
16 TraesCS5A01G277400 chr1A 512661200 512662077 877 True 1109.000000 1109 89.6980 2303 3177 1 chr1A.!!$R1 874
17 TraesCS5A01G277400 chr1A 554675541 554676198 657 False 1051.000000 1051 95.5930 1 654 1 chr1A.!!$F1 653
18 TraesCS5A01G277400 chr2A 963817 964470 653 True 1031.000000 1031 95.1150 1 654 1 chr2A.!!$R1 653
19 TraesCS5A01G277400 chr2A 424525669 424526325 656 True 1027.000000 1027 94.9770 1 654 1 chr2A.!!$R4 653
20 TraesCS5A01G277400 chr2A 32262920 32263551 631 True 808.000000 808 90.0160 2223 2849 1 chr2A.!!$R2 626
21 TraesCS5A01G277400 chr2A 109327419 109327974 555 True 789.000000 789 92.3490 2226 2782 1 chr2A.!!$R3 556
22 TraesCS5A01G277400 chr3B 13917085 13917742 657 False 1018.000000 1018 94.6810 1 654 1 chr3B.!!$F1 653
23 TraesCS5A01G277400 chr1D 104285474 104286136 662 False 468.000000 468 80.2050 2524 3177 1 chr1D.!!$F1 653
24 TraesCS5A01G277400 chr1D 418767967 418769308 1341 False 373.666667 468 89.5260 2224 3186 3 chr1D.!!$F3 962
25 TraesCS5A01G277400 chr3D 404972124 404972772 648 False 429.000000 429 79.3810 2525 3180 1 chr3D.!!$F1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 754 0.036294 ACGGAAAGACCTAAGCCAGC 60.036 55.0 0.00 0.0 36.31 4.85 F
1047 1064 0.179156 CATGCCAATGGACAGCGTTC 60.179 55.0 2.05 0.0 0.00 3.95 F
1260 1295 0.817634 AGGACGCTCCTCGAGATCAG 60.818 60.0 15.71 7.8 45.66 2.90 F
2110 2180 0.253044 TTCTGGGCTGGTCTATGCAC 59.747 55.0 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2161 0.253044 GTGCATAGACCAGCCCAGAA 59.747 55.0 0.00 0.0 0.00 3.02 R
2096 2166 0.393537 AAGCAGTGCATAGACCAGCC 60.394 55.0 19.20 0.0 0.00 4.85 R
2191 2261 0.405973 AGAAAGGGAAAGGCAGGGTC 59.594 55.0 0.00 0.0 0.00 4.46 R
3356 4383 1.503294 TGCGTACGAGTTTGCATTGA 58.497 45.0 21.65 0.0 31.31 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.995282 CCAGTAACAACAGGTCAAGTAATGA 59.005 40.000 0.00 0.00 35.05 2.57
41 42 3.062639 GTCAAGTAATGATGCCAGACACG 59.937 47.826 0.00 0.00 40.97 4.49
214 215 2.948315 GGAAGCCTGATGATTCTGGAAC 59.052 50.000 3.39 0.00 42.12 3.62
365 366 4.021104 TCATTCCTATGTAGAATGGGCGAG 60.021 45.833 12.21 0.00 46.91 5.03
416 417 5.063204 AGAATGTTGGTTTTGATCTGACGA 58.937 37.500 0.00 0.00 0.00 4.20
498 505 0.616891 GAAGGGGTCCACGTACCAAT 59.383 55.000 9.65 0.00 41.67 3.16
499 506 1.832998 GAAGGGGTCCACGTACCAATA 59.167 52.381 9.65 0.00 41.67 1.90
577 585 0.114364 GGTTTTGGGTCCCCTGTCAT 59.886 55.000 5.13 0.00 36.94 3.06
583 591 2.660064 GGTCCCCTGTCATCAGCGT 61.660 63.158 0.00 0.00 40.09 5.07
617 626 3.005539 GGGAGAGAGCTGGCCACA 61.006 66.667 0.00 0.00 0.00 4.17
620 629 1.601171 GAGAGAGCTGGCCACATGT 59.399 57.895 0.00 0.00 0.00 3.21
621 630 0.826715 GAGAGAGCTGGCCACATGTA 59.173 55.000 0.00 0.00 0.00 2.29
625 634 1.630369 AGAGCTGGCCACATGTAAGAA 59.370 47.619 0.00 0.00 0.00 2.52
654 663 4.401022 TCACGTAAGGTTTACTCTCCTCA 58.599 43.478 0.00 0.00 46.39 3.86
655 664 4.217118 TCACGTAAGGTTTACTCTCCTCAC 59.783 45.833 0.00 0.00 46.39 3.51
656 665 3.509184 ACGTAAGGTTTACTCTCCTCACC 59.491 47.826 0.00 0.00 46.39 4.02
657 666 3.119209 CGTAAGGTTTACTCTCCTCACCC 60.119 52.174 0.00 0.00 33.09 4.61
658 667 1.954035 AGGTTTACTCTCCTCACCCC 58.046 55.000 0.00 0.00 0.00 4.95
659 668 0.535797 GGTTTACTCTCCTCACCCCG 59.464 60.000 0.00 0.00 0.00 5.73
660 669 0.108281 GTTTACTCTCCTCACCCCGC 60.108 60.000 0.00 0.00 0.00 6.13
661 670 0.543410 TTTACTCTCCTCACCCCGCA 60.543 55.000 0.00 0.00 0.00 5.69
662 671 0.543410 TTACTCTCCTCACCCCGCAA 60.543 55.000 0.00 0.00 0.00 4.85
663 672 0.543410 TACTCTCCTCACCCCGCAAA 60.543 55.000 0.00 0.00 0.00 3.68
664 673 1.374947 CTCTCCTCACCCCGCAAAA 59.625 57.895 0.00 0.00 0.00 2.44
665 674 0.250727 CTCTCCTCACCCCGCAAAAA 60.251 55.000 0.00 0.00 0.00 1.94
695 704 9.218525 AGATTTACTCTCCTTCCAATATTCTCA 57.781 33.333 0.00 0.00 0.00 3.27
696 705 9.267084 GATTTACTCTCCTTCCAATATTCTCAC 57.733 37.037 0.00 0.00 0.00 3.51
697 706 5.622346 ACTCTCCTTCCAATATTCTCACC 57.378 43.478 0.00 0.00 0.00 4.02
698 707 4.410555 ACTCTCCTTCCAATATTCTCACCC 59.589 45.833 0.00 0.00 0.00 4.61
699 708 3.716872 TCTCCTTCCAATATTCTCACCCC 59.283 47.826 0.00 0.00 0.00 4.95
700 709 3.459598 CTCCTTCCAATATTCTCACCCCA 59.540 47.826 0.00 0.00 0.00 4.96
701 710 4.054369 TCCTTCCAATATTCTCACCCCAT 58.946 43.478 0.00 0.00 0.00 4.00
702 711 4.104738 TCCTTCCAATATTCTCACCCCATC 59.895 45.833 0.00 0.00 0.00 3.51
703 712 4.401925 CTTCCAATATTCTCACCCCATCC 58.598 47.826 0.00 0.00 0.00 3.51
704 713 2.371841 TCCAATATTCTCACCCCATCCG 59.628 50.000 0.00 0.00 0.00 4.18
705 714 2.371841 CCAATATTCTCACCCCATCCGA 59.628 50.000 0.00 0.00 0.00 4.55
706 715 3.009473 CCAATATTCTCACCCCATCCGAT 59.991 47.826 0.00 0.00 0.00 4.18
707 716 4.256920 CAATATTCTCACCCCATCCGATC 58.743 47.826 0.00 0.00 0.00 3.69
708 717 1.806496 ATTCTCACCCCATCCGATCA 58.194 50.000 0.00 0.00 0.00 2.92
709 718 1.123077 TTCTCACCCCATCCGATCAG 58.877 55.000 0.00 0.00 0.00 2.90
710 719 0.760567 TCTCACCCCATCCGATCAGG 60.761 60.000 0.00 0.00 42.97 3.86
711 720 1.762522 CTCACCCCATCCGATCAGGG 61.763 65.000 10.43 10.43 45.75 4.45
714 723 2.122413 CCCATCCGATCAGGGGGA 60.122 66.667 10.39 1.72 42.32 4.81
715 724 2.219875 CCCATCCGATCAGGGGGAG 61.220 68.421 10.39 2.91 42.32 4.30
716 725 2.746359 CATCCGATCAGGGGGAGC 59.254 66.667 0.00 0.00 41.52 4.70
721 730 2.514824 GATCAGGGGGAGCGTTGC 60.515 66.667 0.00 0.00 0.00 4.17
722 731 3.329542 GATCAGGGGGAGCGTTGCA 62.330 63.158 0.00 0.00 0.00 4.08
723 732 3.335356 ATCAGGGGGAGCGTTGCAG 62.335 63.158 0.00 0.00 0.00 4.41
731 740 4.961511 AGCGTTGCAGCGACGGAA 62.962 61.111 31.71 0.00 41.09 4.30
732 741 4.007940 GCGTTGCAGCGACGGAAA 62.008 61.111 31.71 0.00 41.09 3.13
733 742 2.170985 CGTTGCAGCGACGGAAAG 59.829 61.111 25.33 0.00 37.58 2.62
734 743 2.307309 CGTTGCAGCGACGGAAAGA 61.307 57.895 25.33 0.00 37.58 2.52
735 744 1.204312 GTTGCAGCGACGGAAAGAC 59.796 57.895 0.00 0.00 0.00 3.01
736 745 1.959226 TTGCAGCGACGGAAAGACC 60.959 57.895 0.00 0.00 0.00 3.85
737 746 2.048127 GCAGCGACGGAAAGACCT 60.048 61.111 0.00 0.00 36.31 3.85
738 747 1.214589 GCAGCGACGGAAAGACCTA 59.785 57.895 0.00 0.00 36.31 3.08
739 748 0.389426 GCAGCGACGGAAAGACCTAA 60.389 55.000 0.00 0.00 36.31 2.69
740 749 1.630148 CAGCGACGGAAAGACCTAAG 58.370 55.000 0.00 0.00 36.31 2.18
741 750 0.108756 AGCGACGGAAAGACCTAAGC 60.109 55.000 0.00 0.00 36.31 3.09
742 751 1.082679 GCGACGGAAAGACCTAAGCC 61.083 60.000 0.00 0.00 36.31 4.35
743 752 0.245539 CGACGGAAAGACCTAAGCCA 59.754 55.000 0.00 0.00 36.31 4.75
744 753 1.736032 CGACGGAAAGACCTAAGCCAG 60.736 57.143 0.00 0.00 36.31 4.85
745 754 0.036294 ACGGAAAGACCTAAGCCAGC 60.036 55.000 0.00 0.00 36.31 4.85
746 755 0.250513 CGGAAAGACCTAAGCCAGCT 59.749 55.000 0.00 0.00 36.31 4.24
747 756 1.743996 GGAAAGACCTAAGCCAGCTG 58.256 55.000 6.78 6.78 35.41 4.24
748 757 1.090728 GAAAGACCTAAGCCAGCTGC 58.909 55.000 8.66 3.91 41.71 5.25
749 758 0.322906 AAAGACCTAAGCCAGCTGCC 60.323 55.000 8.66 0.00 42.71 4.85
792 801 3.301222 ATCCCGGGGCTTTGCACAT 62.301 57.895 23.50 0.00 30.93 3.21
800 809 1.268032 GGGCTTTGCACATAATCGACG 60.268 52.381 0.00 0.00 0.00 5.12
857 866 5.529800 ACTTCAGTTGCCTACGTAACATTTT 59.470 36.000 0.00 0.00 37.08 1.82
903 912 2.452813 CCGCAAACCCTCGTGATCG 61.453 63.158 0.00 0.00 38.55 3.69
1012 1029 1.133598 TGCTATCGACAACGTAGGTGG 59.866 52.381 0.00 0.00 40.69 4.61
1047 1064 0.179156 CATGCCAATGGACAGCGTTC 60.179 55.000 2.05 0.00 0.00 3.95
1079 1099 1.909302 ACCACTTCCGATGTCTCCAAT 59.091 47.619 0.00 0.00 0.00 3.16
1097 1117 2.810274 CAATATGGCAGTAGCAAGCGAT 59.190 45.455 0.00 0.00 44.61 4.58
1260 1295 0.817634 AGGACGCTCCTCGAGATCAG 60.818 60.000 15.71 7.80 45.66 2.90
1471 1525 4.203076 GCCACGTACCCGCTCGAT 62.203 66.667 0.00 0.00 37.70 3.59
1579 1642 2.736995 CTGTACCGTGGTGCGTGG 60.737 66.667 0.72 0.00 39.32 4.94
1949 2019 3.136123 CCTGCCAACCAGCCATCG 61.136 66.667 0.00 0.00 40.36 3.84
1967 2037 5.680151 GCCATCGCTAGTCCTCTATTATTCC 60.680 48.000 0.00 0.00 0.00 3.01
1968 2038 5.419155 CCATCGCTAGTCCTCTATTATTCCA 59.581 44.000 0.00 0.00 0.00 3.53
1969 2039 5.961396 TCGCTAGTCCTCTATTATTCCAC 57.039 43.478 0.00 0.00 0.00 4.02
1970 2040 5.632118 TCGCTAGTCCTCTATTATTCCACT 58.368 41.667 0.00 0.00 0.00 4.00
1971 2041 6.069331 TCGCTAGTCCTCTATTATTCCACTT 58.931 40.000 0.00 0.00 0.00 3.16
1972 2042 6.550108 TCGCTAGTCCTCTATTATTCCACTTT 59.450 38.462 0.00 0.00 0.00 2.66
1973 2043 7.722728 TCGCTAGTCCTCTATTATTCCACTTTA 59.277 37.037 0.00 0.00 0.00 1.85
1974 2044 8.024285 CGCTAGTCCTCTATTATTCCACTTTAG 58.976 40.741 0.00 0.00 0.00 1.85
1975 2045 7.815549 GCTAGTCCTCTATTATTCCACTTTAGC 59.184 40.741 0.00 0.00 0.00 3.09
1976 2046 7.922699 AGTCCTCTATTATTCCACTTTAGCT 57.077 36.000 0.00 0.00 0.00 3.32
1977 2047 8.325477 AGTCCTCTATTATTCCACTTTAGCTT 57.675 34.615 0.00 0.00 0.00 3.74
1978 2048 8.773216 AGTCCTCTATTATTCCACTTTAGCTTT 58.227 33.333 0.00 0.00 0.00 3.51
1979 2049 9.397280 GTCCTCTATTATTCCACTTTAGCTTTT 57.603 33.333 0.00 0.00 0.00 2.27
1980 2050 9.975218 TCCTCTATTATTCCACTTTAGCTTTTT 57.025 29.630 0.00 0.00 0.00 1.94
2005 2075 8.800231 TTTTAACGGTTTTATTCCACTTTAGC 57.200 30.769 0.00 0.00 0.00 3.09
2006 2076 7.748691 TTAACGGTTTTATTCCACTTTAGCT 57.251 32.000 0.00 0.00 0.00 3.32
2007 2077 8.845413 TTAACGGTTTTATTCCACTTTAGCTA 57.155 30.769 0.00 0.00 0.00 3.32
2008 2078 7.933215 AACGGTTTTATTCCACTTTAGCTAT 57.067 32.000 0.00 0.00 0.00 2.97
2010 2080 8.429493 ACGGTTTTATTCCACTTTAGCTATAC 57.571 34.615 0.00 0.00 0.00 1.47
2011 2081 7.223387 ACGGTTTTATTCCACTTTAGCTATACG 59.777 37.037 0.00 0.00 0.00 3.06
2012 2082 7.350467 GGTTTTATTCCACTTTAGCTATACGC 58.650 38.462 0.00 0.00 39.57 4.42
2013 2083 7.011669 GGTTTTATTCCACTTTAGCTATACGCA 59.988 37.037 0.00 0.00 42.61 5.24
2014 2084 8.392612 GTTTTATTCCACTTTAGCTATACGCAA 58.607 33.333 0.00 0.00 42.61 4.85
2015 2085 7.709269 TTATTCCACTTTAGCTATACGCAAG 57.291 36.000 0.00 0.00 42.61 4.01
2028 2098 3.773117 CGCAAGTCGCCTGAAAATT 57.227 47.368 0.00 0.00 37.30 1.82
2029 2099 2.892373 CGCAAGTCGCCTGAAAATTA 57.108 45.000 0.00 0.00 37.30 1.40
2030 2100 2.505866 CGCAAGTCGCCTGAAAATTAC 58.494 47.619 0.00 0.00 37.30 1.89
2031 2101 2.159627 CGCAAGTCGCCTGAAAATTACT 59.840 45.455 0.00 0.00 37.30 2.24
2032 2102 3.364964 CGCAAGTCGCCTGAAAATTACTT 60.365 43.478 0.00 0.00 37.30 2.24
2033 2103 4.546570 GCAAGTCGCCTGAAAATTACTTT 58.453 39.130 0.00 0.00 32.94 2.66
2034 2104 4.982295 GCAAGTCGCCTGAAAATTACTTTT 59.018 37.500 0.00 0.00 34.05 2.27
2035 2105 5.107875 GCAAGTCGCCTGAAAATTACTTTTG 60.108 40.000 0.00 0.00 32.48 2.44
2036 2106 5.121221 AGTCGCCTGAAAATTACTTTTGG 57.879 39.130 0.00 0.00 34.73 3.28
2037 2107 4.022329 AGTCGCCTGAAAATTACTTTTGGG 60.022 41.667 0.00 0.23 34.73 4.12
2038 2108 3.892588 TCGCCTGAAAATTACTTTTGGGT 59.107 39.130 0.00 0.00 34.73 4.51
2039 2109 4.342665 TCGCCTGAAAATTACTTTTGGGTT 59.657 37.500 0.00 0.00 34.73 4.11
2040 2110 5.535406 TCGCCTGAAAATTACTTTTGGGTTA 59.465 36.000 0.00 0.00 34.73 2.85
2041 2111 5.861787 CGCCTGAAAATTACTTTTGGGTTAG 59.138 40.000 0.00 0.00 34.73 2.34
2042 2112 6.516028 CGCCTGAAAATTACTTTTGGGTTAGT 60.516 38.462 0.00 0.00 34.73 2.24
2043 2113 6.866770 GCCTGAAAATTACTTTTGGGTTAGTC 59.133 38.462 0.00 0.00 34.73 2.59
2044 2114 7.470841 GCCTGAAAATTACTTTTGGGTTAGTCA 60.471 37.037 0.00 0.00 34.73 3.41
2045 2115 8.417884 CCTGAAAATTACTTTTGGGTTAGTCAA 58.582 33.333 0.00 0.00 34.73 3.18
2046 2116 9.981114 CTGAAAATTACTTTTGGGTTAGTCAAT 57.019 29.630 0.00 0.00 34.73 2.57
2052 2122 8.950208 TTACTTTTGGGTTAGTCAATTTTTGG 57.050 30.769 0.00 0.00 0.00 3.28
2053 2123 7.189079 ACTTTTGGGTTAGTCAATTTTTGGA 57.811 32.000 0.00 0.00 0.00 3.53
2054 2124 7.045416 ACTTTTGGGTTAGTCAATTTTTGGAC 58.955 34.615 0.00 0.00 0.00 4.02
2055 2125 6.800072 TTTGGGTTAGTCAATTTTTGGACT 57.200 33.333 0.00 0.00 45.72 3.85
2056 2126 5.782893 TGGGTTAGTCAATTTTTGGACTG 57.217 39.130 6.45 0.00 43.78 3.51
2057 2127 5.205056 TGGGTTAGTCAATTTTTGGACTGT 58.795 37.500 6.45 0.00 43.78 3.55
2058 2128 5.659079 TGGGTTAGTCAATTTTTGGACTGTT 59.341 36.000 6.45 0.00 43.78 3.16
2059 2129 5.983118 GGGTTAGTCAATTTTTGGACTGTTG 59.017 40.000 6.45 0.00 43.78 3.33
2060 2130 6.183360 GGGTTAGTCAATTTTTGGACTGTTGA 60.183 38.462 6.45 0.00 43.78 3.18
2061 2131 7.262048 GGTTAGTCAATTTTTGGACTGTTGAA 58.738 34.615 6.45 0.00 43.78 2.69
2062 2132 7.926018 GGTTAGTCAATTTTTGGACTGTTGAAT 59.074 33.333 6.45 0.00 43.78 2.57
2063 2133 9.313118 GTTAGTCAATTTTTGGACTGTTGAATT 57.687 29.630 6.45 0.00 43.78 2.17
2064 2134 9.528018 TTAGTCAATTTTTGGACTGTTGAATTC 57.472 29.630 0.00 0.00 43.78 2.17
2065 2135 7.785033 AGTCAATTTTTGGACTGTTGAATTCT 58.215 30.769 7.05 0.00 42.49 2.40
2066 2136 8.912988 AGTCAATTTTTGGACTGTTGAATTCTA 58.087 29.630 7.05 0.00 42.49 2.10
2067 2137 8.968242 GTCAATTTTTGGACTGTTGAATTCTAC 58.032 33.333 12.40 12.40 31.38 2.59
2068 2138 7.860373 TCAATTTTTGGACTGTTGAATTCTACG 59.140 33.333 14.02 11.30 0.00 3.51
2069 2139 6.687081 TTTTTGGACTGTTGAATTCTACGT 57.313 33.333 14.02 13.84 0.00 3.57
2070 2140 5.917541 TTTGGACTGTTGAATTCTACGTC 57.082 39.130 22.94 22.94 0.00 4.34
2071 2141 4.594123 TGGACTGTTGAATTCTACGTCA 57.406 40.909 27.31 18.55 32.26 4.35
2072 2142 4.556233 TGGACTGTTGAATTCTACGTCAG 58.444 43.478 27.31 18.19 32.26 3.51
2073 2143 4.279922 TGGACTGTTGAATTCTACGTCAGA 59.720 41.667 27.31 18.55 32.26 3.27
2074 2144 5.047306 TGGACTGTTGAATTCTACGTCAGAT 60.047 40.000 27.31 10.15 31.77 2.90
2075 2145 5.869888 GGACTGTTGAATTCTACGTCAGATT 59.130 40.000 27.31 6.94 31.77 2.40
2076 2146 6.035112 GGACTGTTGAATTCTACGTCAGATTC 59.965 42.308 27.31 16.24 31.77 2.52
2077 2147 5.573282 ACTGTTGAATTCTACGTCAGATTCG 59.427 40.000 14.02 0.00 31.77 3.34
2078 2148 5.466819 TGTTGAATTCTACGTCAGATTCGT 58.533 37.500 14.02 0.00 43.86 3.85
2079 2149 5.344933 TGTTGAATTCTACGTCAGATTCGTG 59.655 40.000 14.02 0.00 41.62 4.35
2080 2150 3.857665 TGAATTCTACGTCAGATTCGTGC 59.142 43.478 7.05 0.00 41.62 5.34
2081 2151 3.784701 ATTCTACGTCAGATTCGTGCT 57.215 42.857 0.00 0.00 41.62 4.40
2082 2152 2.826979 TCTACGTCAGATTCGTGCTC 57.173 50.000 0.00 0.00 41.62 4.26
2083 2153 2.081462 TCTACGTCAGATTCGTGCTCA 58.919 47.619 0.00 0.00 41.62 4.26
2084 2154 2.683362 TCTACGTCAGATTCGTGCTCAT 59.317 45.455 0.00 0.00 41.62 2.90
2085 2155 3.875134 TCTACGTCAGATTCGTGCTCATA 59.125 43.478 0.00 0.00 41.62 2.15
2086 2156 3.717400 ACGTCAGATTCGTGCTCATAT 57.283 42.857 0.00 0.00 40.07 1.78
2087 2157 4.046938 ACGTCAGATTCGTGCTCATATT 57.953 40.909 0.00 0.00 40.07 1.28
2088 2158 4.433615 ACGTCAGATTCGTGCTCATATTT 58.566 39.130 0.00 0.00 40.07 1.40
2089 2159 4.870426 ACGTCAGATTCGTGCTCATATTTT 59.130 37.500 0.00 0.00 40.07 1.82
2090 2160 5.351465 ACGTCAGATTCGTGCTCATATTTTT 59.649 36.000 0.00 0.00 40.07 1.94
2108 2178 2.128771 TTTTCTGGGCTGGTCTATGC 57.871 50.000 0.00 0.00 0.00 3.14
2109 2179 0.991146 TTTCTGGGCTGGTCTATGCA 59.009 50.000 0.00 0.00 0.00 3.96
2110 2180 0.253044 TTCTGGGCTGGTCTATGCAC 59.747 55.000 0.00 0.00 0.00 4.57
2111 2181 0.618680 TCTGGGCTGGTCTATGCACT 60.619 55.000 0.00 0.00 33.09 4.40
2112 2182 0.463295 CTGGGCTGGTCTATGCACTG 60.463 60.000 0.00 0.00 33.09 3.66
2113 2183 1.821332 GGGCTGGTCTATGCACTGC 60.821 63.158 0.00 0.00 0.00 4.40
2114 2184 1.222936 GGCTGGTCTATGCACTGCT 59.777 57.895 1.98 0.00 0.00 4.24
2115 2185 0.393537 GGCTGGTCTATGCACTGCTT 60.394 55.000 1.98 0.00 0.00 3.91
2116 2186 1.457346 GCTGGTCTATGCACTGCTTT 58.543 50.000 1.98 0.00 0.00 3.51
2117 2187 1.131883 GCTGGTCTATGCACTGCTTTG 59.868 52.381 1.98 0.00 0.00 2.77
2118 2188 1.741706 CTGGTCTATGCACTGCTTTGG 59.258 52.381 1.98 0.00 0.00 3.28
2119 2189 1.098050 GGTCTATGCACTGCTTTGGG 58.902 55.000 1.98 0.00 0.00 4.12
2120 2190 0.453390 GTCTATGCACTGCTTTGGGC 59.547 55.000 1.98 0.00 42.22 5.36
2121 2191 0.329261 TCTATGCACTGCTTTGGGCT 59.671 50.000 1.98 0.00 42.39 5.19
2122 2192 0.454600 CTATGCACTGCTTTGGGCTG 59.545 55.000 1.98 0.00 44.00 4.85
2151 2221 7.880160 TTCTTGACTGACCATATATTTTGGG 57.120 36.000 8.72 0.00 38.64 4.12
2152 2222 6.969043 TCTTGACTGACCATATATTTTGGGT 58.031 36.000 8.72 0.00 38.64 4.51
2159 2229 5.623956 ACCATATATTTTGGGTCAGTCGA 57.376 39.130 8.72 0.00 38.64 4.20
2160 2230 6.187727 ACCATATATTTTGGGTCAGTCGAT 57.812 37.500 8.72 0.00 38.64 3.59
2161 2231 6.601332 ACCATATATTTTGGGTCAGTCGATT 58.399 36.000 8.72 0.00 38.64 3.34
2162 2232 6.710744 ACCATATATTTTGGGTCAGTCGATTC 59.289 38.462 8.72 0.00 38.64 2.52
2163 2233 6.149474 CCATATATTTTGGGTCAGTCGATTCC 59.851 42.308 0.00 0.00 0.00 3.01
2164 2234 3.721087 ATTTTGGGTCAGTCGATTCCT 57.279 42.857 0.00 0.00 0.00 3.36
2165 2235 3.502123 TTTTGGGTCAGTCGATTCCTT 57.498 42.857 0.00 0.00 0.00 3.36
2166 2236 4.627284 TTTTGGGTCAGTCGATTCCTTA 57.373 40.909 0.00 0.00 0.00 2.69
2167 2237 3.887621 TTGGGTCAGTCGATTCCTTAG 57.112 47.619 0.00 0.00 0.00 2.18
2168 2238 2.816411 TGGGTCAGTCGATTCCTTAGT 58.184 47.619 0.00 0.00 0.00 2.24
2169 2239 2.496070 TGGGTCAGTCGATTCCTTAGTG 59.504 50.000 0.00 0.00 0.00 2.74
2170 2240 2.159085 GGGTCAGTCGATTCCTTAGTGG 60.159 54.545 0.00 0.00 37.10 4.00
2171 2241 2.159085 GGTCAGTCGATTCCTTAGTGGG 60.159 54.545 0.00 0.00 36.20 4.61
2172 2242 1.480954 TCAGTCGATTCCTTAGTGGGC 59.519 52.381 0.00 0.00 36.20 5.36
2173 2243 1.482593 CAGTCGATTCCTTAGTGGGCT 59.517 52.381 0.00 0.00 36.20 5.19
2174 2244 1.482593 AGTCGATTCCTTAGTGGGCTG 59.517 52.381 0.00 0.00 36.20 4.85
2175 2245 1.480954 GTCGATTCCTTAGTGGGCTGA 59.519 52.381 0.00 0.00 36.20 4.26
2176 2246 2.093658 GTCGATTCCTTAGTGGGCTGAA 60.094 50.000 0.00 0.00 36.20 3.02
2177 2247 2.093658 TCGATTCCTTAGTGGGCTGAAC 60.094 50.000 0.00 0.00 36.20 3.18
2178 2248 2.644676 GATTCCTTAGTGGGCTGAACC 58.355 52.381 0.00 0.00 36.20 3.62
2189 2259 2.660189 GGCTGAACCCATTTCATGTG 57.340 50.000 0.00 0.00 43.54 3.21
2190 2260 1.404583 GGCTGAACCCATTTCATGTGC 60.405 52.381 0.00 0.00 43.54 4.57
2191 2261 1.733389 GCTGAACCCATTTCATGTGCG 60.733 52.381 0.00 0.00 43.54 5.34
2192 2262 1.811965 CTGAACCCATTTCATGTGCGA 59.188 47.619 0.00 0.00 43.54 5.10
2193 2263 1.539388 TGAACCCATTTCATGTGCGAC 59.461 47.619 0.00 0.00 39.45 5.19
2194 2264 0.887933 AACCCATTTCATGTGCGACC 59.112 50.000 0.00 0.00 0.00 4.79
2195 2265 0.965363 ACCCATTTCATGTGCGACCC 60.965 55.000 0.00 0.00 0.00 4.46
2196 2266 0.680921 CCCATTTCATGTGCGACCCT 60.681 55.000 0.00 0.00 0.00 4.34
2197 2267 0.452987 CCATTTCATGTGCGACCCTG 59.547 55.000 0.00 0.00 0.00 4.45
2198 2268 0.179156 CATTTCATGTGCGACCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
2199 2269 1.315257 ATTTCATGTGCGACCCTGCC 61.315 55.000 0.00 0.00 0.00 4.85
2200 2270 2.410322 TTTCATGTGCGACCCTGCCT 62.410 55.000 0.00 0.00 0.00 4.75
2201 2271 2.360350 CATGTGCGACCCTGCCTT 60.360 61.111 0.00 0.00 0.00 4.35
2202 2272 1.973281 CATGTGCGACCCTGCCTTT 60.973 57.895 0.00 0.00 0.00 3.11
2203 2273 1.675641 ATGTGCGACCCTGCCTTTC 60.676 57.895 0.00 0.00 0.00 2.62
2204 2274 3.056328 GTGCGACCCTGCCTTTCC 61.056 66.667 0.00 0.00 0.00 3.13
2205 2275 4.344865 TGCGACCCTGCCTTTCCC 62.345 66.667 0.00 0.00 0.00 3.97
2206 2276 4.035102 GCGACCCTGCCTTTCCCT 62.035 66.667 0.00 0.00 0.00 4.20
2207 2277 2.757077 CGACCCTGCCTTTCCCTT 59.243 61.111 0.00 0.00 0.00 3.95
2208 2278 1.074951 CGACCCTGCCTTTCCCTTT 59.925 57.895 0.00 0.00 0.00 3.11
2209 2279 0.960861 CGACCCTGCCTTTCCCTTTC 60.961 60.000 0.00 0.00 0.00 2.62
2210 2280 0.405973 GACCCTGCCTTTCCCTTTCT 59.594 55.000 0.00 0.00 0.00 2.52
2211 2281 0.405973 ACCCTGCCTTTCCCTTTCTC 59.594 55.000 0.00 0.00 0.00 2.87
2212 2282 0.701147 CCCTGCCTTTCCCTTTCTCT 59.299 55.000 0.00 0.00 0.00 3.10
2213 2283 1.340502 CCCTGCCTTTCCCTTTCTCTC 60.341 57.143 0.00 0.00 0.00 3.20
2217 2287 4.263506 CCTGCCTTTCCCTTTCTCTCTTTA 60.264 45.833 0.00 0.00 0.00 1.85
2220 2290 6.314917 TGCCTTTCCCTTTCTCTCTTTATTT 58.685 36.000 0.00 0.00 0.00 1.40
2222 2292 7.393515 TGCCTTTCCCTTTCTCTCTTTATTTAC 59.606 37.037 0.00 0.00 0.00 2.01
2444 2986 6.884295 CCATGAGAAAAAGTATACCAGGTTCA 59.116 38.462 0.00 0.00 0.00 3.18
2445 2987 7.148239 CCATGAGAAAAAGTATACCAGGTTCAC 60.148 40.741 0.00 0.00 0.00 3.18
2661 3215 9.810545 TTGATAAAAACTAAGAAAACAAGGGTG 57.189 29.630 0.00 0.00 0.00 4.61
2783 3358 1.203050 AGCTTGTGTGCCTTTACCCAT 60.203 47.619 0.00 0.00 0.00 4.00
2822 3401 5.421374 TGCTTTCTCTCTCTCTCATCATGAA 59.579 40.000 0.00 0.00 0.00 2.57
2841 3839 1.714794 AGCGTACTTGCTAGTTGCTG 58.285 50.000 20.77 5.90 45.14 4.41
2849 3847 2.013021 GCTAGTTGCTGCTGCTAGC 58.987 57.895 26.71 26.71 46.89 3.42
2893 3891 2.475466 CCTGCATGCATCACCGGAC 61.475 63.158 22.97 0.00 0.00 4.79
2935 3939 6.014499 GGATAGTGGCTAGGCTATAAAGAACA 60.014 42.308 18.18 0.00 0.00 3.18
3015 4022 2.676471 GCAGCACGGGGAAATGGT 60.676 61.111 0.00 0.00 0.00 3.55
3028 4035 0.614812 AAATGGTGCAGCAAATCCCC 59.385 50.000 24.18 0.00 0.00 4.81
3083 4108 3.813166 GGTTTATATGCAGCCACGTGTAT 59.187 43.478 15.65 7.05 0.00 2.29
3182 4209 9.928618 ACACTATATAGGAGTATAGATGTGCAT 57.071 33.333 14.25 0.00 37.83 3.96
3188 4215 6.382869 AGGAGTATAGATGTGCATTTTTGC 57.617 37.500 0.00 0.00 0.00 3.68
3189 4216 6.125029 AGGAGTATAGATGTGCATTTTTGCT 58.875 36.000 0.00 0.00 35.49 3.91
3190 4217 6.604795 AGGAGTATAGATGTGCATTTTTGCTT 59.395 34.615 0.00 0.00 35.49 3.91
3191 4218 7.123247 AGGAGTATAGATGTGCATTTTTGCTTT 59.877 33.333 0.00 0.00 35.49 3.51
3192 4219 7.761249 GGAGTATAGATGTGCATTTTTGCTTTT 59.239 33.333 0.00 0.00 35.49 2.27
3193 4220 8.470040 AGTATAGATGTGCATTTTTGCTTTTG 57.530 30.769 0.00 0.00 35.49 2.44
3211 4238 7.621832 GCTTTTGCTTTTGTTTTCTGTTTTT 57.378 28.000 0.00 0.00 43.35 1.94
3212 4239 7.710273 GCTTTTGCTTTTGTTTTCTGTTTTTC 58.290 30.769 0.00 0.00 43.35 2.29
3213 4240 7.591057 GCTTTTGCTTTTGTTTTCTGTTTTTCT 59.409 29.630 0.00 0.00 43.35 2.52
3214 4241 9.449550 CTTTTGCTTTTGTTTTCTGTTTTTCTT 57.550 25.926 0.00 0.00 0.00 2.52
3215 4242 9.794685 TTTTGCTTTTGTTTTCTGTTTTTCTTT 57.205 22.222 0.00 0.00 0.00 2.52
3256 4283 5.461032 TTTTGTGTGTGGCTATTTTAGGG 57.539 39.130 0.00 0.00 0.00 3.53
3257 4284 3.799432 TGTGTGTGGCTATTTTAGGGT 57.201 42.857 0.00 0.00 0.00 4.34
3258 4285 3.417101 TGTGTGTGGCTATTTTAGGGTG 58.583 45.455 0.00 0.00 0.00 4.61
3259 4286 3.181438 TGTGTGTGGCTATTTTAGGGTGT 60.181 43.478 0.00 0.00 0.00 4.16
3260 4287 3.824443 GTGTGTGGCTATTTTAGGGTGTT 59.176 43.478 0.00 0.00 0.00 3.32
3261 4288 4.279922 GTGTGTGGCTATTTTAGGGTGTTT 59.720 41.667 0.00 0.00 0.00 2.83
3262 4289 4.279671 TGTGTGGCTATTTTAGGGTGTTTG 59.720 41.667 0.00 0.00 0.00 2.93
3263 4290 4.521256 GTGTGGCTATTTTAGGGTGTTTGA 59.479 41.667 0.00 0.00 0.00 2.69
3264 4291 5.185056 GTGTGGCTATTTTAGGGTGTTTGAT 59.815 40.000 0.00 0.00 0.00 2.57
3265 4292 5.184864 TGTGGCTATTTTAGGGTGTTTGATG 59.815 40.000 0.00 0.00 0.00 3.07
3266 4293 5.417580 GTGGCTATTTTAGGGTGTTTGATGA 59.582 40.000 0.00 0.00 0.00 2.92
3267 4294 5.652014 TGGCTATTTTAGGGTGTTTGATGAG 59.348 40.000 0.00 0.00 0.00 2.90
3268 4295 5.652452 GGCTATTTTAGGGTGTTTGATGAGT 59.348 40.000 0.00 0.00 0.00 3.41
3269 4296 6.404734 GGCTATTTTAGGGTGTTTGATGAGTG 60.405 42.308 0.00 0.00 0.00 3.51
3270 4297 6.151144 GCTATTTTAGGGTGTTTGATGAGTGT 59.849 38.462 0.00 0.00 0.00 3.55
3271 4298 7.335924 GCTATTTTAGGGTGTTTGATGAGTGTA 59.664 37.037 0.00 0.00 0.00 2.90
3272 4299 9.226606 CTATTTTAGGGTGTTTGATGAGTGTAA 57.773 33.333 0.00 0.00 0.00 2.41
3273 4300 7.883391 TTTTAGGGTGTTTGATGAGTGTAAA 57.117 32.000 0.00 0.00 0.00 2.01
3274 4301 8.472007 TTTTAGGGTGTTTGATGAGTGTAAAT 57.528 30.769 0.00 0.00 0.00 1.40
3275 4302 5.964958 AGGGTGTTTGATGAGTGTAAATG 57.035 39.130 0.00 0.00 0.00 2.32
3276 4303 5.385198 AGGGTGTTTGATGAGTGTAAATGT 58.615 37.500 0.00 0.00 0.00 2.71
3277 4304 6.539173 AGGGTGTTTGATGAGTGTAAATGTA 58.461 36.000 0.00 0.00 0.00 2.29
3278 4305 7.175104 AGGGTGTTTGATGAGTGTAAATGTAT 58.825 34.615 0.00 0.00 0.00 2.29
3279 4306 8.325787 AGGGTGTTTGATGAGTGTAAATGTATA 58.674 33.333 0.00 0.00 0.00 1.47
3280 4307 8.395633 GGGTGTTTGATGAGTGTAAATGTATAC 58.604 37.037 0.00 0.00 0.00 1.47
3281 4308 8.941977 GGTGTTTGATGAGTGTAAATGTATACA 58.058 33.333 8.27 8.27 33.52 2.29
3372 4399 5.177374 GCAATTTCAATGCAAACTCGTAC 57.823 39.130 0.00 0.00 43.29 3.67
3373 4400 4.201391 GCAATTTCAATGCAAACTCGTACG 60.201 41.667 9.53 9.53 43.29 3.67
3374 4401 2.587612 TTCAATGCAAACTCGTACGC 57.412 45.000 11.24 0.00 0.00 4.42
3375 4402 1.503294 TCAATGCAAACTCGTACGCA 58.497 45.000 11.24 1.33 39.01 5.24
3376 4403 1.867865 TCAATGCAAACTCGTACGCAA 59.132 42.857 11.24 0.00 38.01 4.85
3377 4404 2.482336 TCAATGCAAACTCGTACGCAAT 59.518 40.909 11.24 0.00 38.01 3.56
3378 4405 3.058570 TCAATGCAAACTCGTACGCAATT 60.059 39.130 11.24 1.32 38.01 2.32
3379 4406 3.552604 ATGCAAACTCGTACGCAATTT 57.447 38.095 11.24 7.82 38.01 1.82
3380 4407 2.911120 TGCAAACTCGTACGCAATTTC 58.089 42.857 11.24 0.20 0.00 2.17
3381 4408 2.546368 TGCAAACTCGTACGCAATTTCT 59.454 40.909 11.24 0.00 0.00 2.52
3382 4409 3.002862 TGCAAACTCGTACGCAATTTCTT 59.997 39.130 11.24 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.760634 TATGTCAACGTGTCTGGCAT 57.239 45.000 10.40 10.40 41.79 4.40
41 42 7.112528 TCACAACACGATACTTTATGTCAAC 57.887 36.000 0.00 0.00 0.00 3.18
96 97 7.584123 GCATATGCTTCGTTCTTATGTGTTTAG 59.416 37.037 20.64 0.00 38.21 1.85
214 215 8.122472 AGTGGTTTATTTTAATGGTCCTCTTG 57.878 34.615 0.00 0.00 0.00 3.02
365 366 5.063564 CCTTGATCGTTAGGCTTAACTTCAC 59.936 44.000 15.76 6.25 37.58 3.18
416 417 5.763876 AGATCTAACTGGCCTGTTTAAGT 57.236 39.130 29.98 15.44 0.00 2.24
498 505 4.127907 AGTTCTGATCGAGCTCACGTATA 58.872 43.478 15.40 0.00 34.70 1.47
499 506 2.946329 AGTTCTGATCGAGCTCACGTAT 59.054 45.455 15.40 0.87 34.70 3.06
577 585 5.466819 CGTATCCCTTTAATATGACGCTGA 58.533 41.667 0.00 0.00 0.00 4.26
583 591 6.558498 TCTCTCCCGTATCCCTTTAATATGA 58.442 40.000 0.00 0.00 0.00 2.15
617 626 6.708949 ACCTTACGTGAATTGTGTTCTTACAT 59.291 34.615 0.00 0.00 36.50 2.29
620 629 7.556733 AAACCTTACGTGAATTGTGTTCTTA 57.443 32.000 0.00 0.00 0.00 2.10
621 630 6.445357 AAACCTTACGTGAATTGTGTTCTT 57.555 33.333 0.00 0.00 0.00 2.52
625 634 6.285990 AGAGTAAACCTTACGTGAATTGTGT 58.714 36.000 0.00 0.00 0.00 3.72
669 678 9.218525 TGAGAATATTGGAAGGAGAGTAAATCT 57.781 33.333 0.00 0.00 42.61 2.40
670 679 9.267084 GTGAGAATATTGGAAGGAGAGTAAATC 57.733 37.037 0.00 0.00 0.00 2.17
671 680 8.214364 GGTGAGAATATTGGAAGGAGAGTAAAT 58.786 37.037 0.00 0.00 0.00 1.40
672 681 7.365652 GGGTGAGAATATTGGAAGGAGAGTAAA 60.366 40.741 0.00 0.00 0.00 2.01
673 682 6.099845 GGGTGAGAATATTGGAAGGAGAGTAA 59.900 42.308 0.00 0.00 0.00 2.24
674 683 5.602978 GGGTGAGAATATTGGAAGGAGAGTA 59.397 44.000 0.00 0.00 0.00 2.59
675 684 4.410555 GGGTGAGAATATTGGAAGGAGAGT 59.589 45.833 0.00 0.00 0.00 3.24
676 685 4.202409 GGGGTGAGAATATTGGAAGGAGAG 60.202 50.000 0.00 0.00 0.00 3.20
677 686 3.716872 GGGGTGAGAATATTGGAAGGAGA 59.283 47.826 0.00 0.00 0.00 3.71
678 687 3.459598 TGGGGTGAGAATATTGGAAGGAG 59.540 47.826 0.00 0.00 0.00 3.69
679 688 3.469859 TGGGGTGAGAATATTGGAAGGA 58.530 45.455 0.00 0.00 0.00 3.36
680 689 3.951563 TGGGGTGAGAATATTGGAAGG 57.048 47.619 0.00 0.00 0.00 3.46
681 690 4.401925 GGATGGGGTGAGAATATTGGAAG 58.598 47.826 0.00 0.00 0.00 3.46
682 691 3.181445 CGGATGGGGTGAGAATATTGGAA 60.181 47.826 0.00 0.00 0.00 3.53
683 692 2.371841 CGGATGGGGTGAGAATATTGGA 59.628 50.000 0.00 0.00 0.00 3.53
684 693 2.371841 TCGGATGGGGTGAGAATATTGG 59.628 50.000 0.00 0.00 0.00 3.16
685 694 3.769739 TCGGATGGGGTGAGAATATTG 57.230 47.619 0.00 0.00 0.00 1.90
686 695 3.909995 TGATCGGATGGGGTGAGAATATT 59.090 43.478 0.00 0.00 0.00 1.28
687 696 3.517100 CTGATCGGATGGGGTGAGAATAT 59.483 47.826 0.00 0.00 0.00 1.28
688 697 2.899900 CTGATCGGATGGGGTGAGAATA 59.100 50.000 0.00 0.00 0.00 1.75
689 698 1.696336 CTGATCGGATGGGGTGAGAAT 59.304 52.381 0.00 0.00 0.00 2.40
690 699 1.123077 CTGATCGGATGGGGTGAGAA 58.877 55.000 0.00 0.00 0.00 2.87
691 700 0.760567 CCTGATCGGATGGGGTGAGA 60.761 60.000 2.08 0.00 33.16 3.27
692 701 1.750930 CCTGATCGGATGGGGTGAG 59.249 63.158 2.08 0.00 33.16 3.51
693 702 1.766059 CCCTGATCGGATGGGGTGA 60.766 63.158 2.08 0.00 37.37 4.02
694 703 2.831770 CCCTGATCGGATGGGGTG 59.168 66.667 2.08 1.05 37.37 4.61
697 706 2.122413 TCCCCCTGATCGGATGGG 60.122 66.667 18.49 18.49 40.59 4.00
698 707 2.888447 GCTCCCCCTGATCGGATGG 61.888 68.421 2.08 2.97 33.16 3.51
699 708 2.746359 GCTCCCCCTGATCGGATG 59.254 66.667 2.08 0.00 33.16 3.51
700 709 2.919856 CGCTCCCCCTGATCGGAT 60.920 66.667 2.08 0.00 33.16 4.18
701 710 3.976490 AACGCTCCCCCTGATCGGA 62.976 63.158 2.08 0.00 36.93 4.55
702 711 3.470888 AACGCTCCCCCTGATCGG 61.471 66.667 0.00 0.00 36.93 4.18
703 712 2.202932 CAACGCTCCCCCTGATCG 60.203 66.667 0.00 0.00 38.52 3.69
704 713 2.514824 GCAACGCTCCCCCTGATC 60.515 66.667 0.00 0.00 0.00 2.92
705 714 3.329889 TGCAACGCTCCCCCTGAT 61.330 61.111 0.00 0.00 0.00 2.90
706 715 4.020617 CTGCAACGCTCCCCCTGA 62.021 66.667 0.00 0.00 0.00 3.86
714 723 4.961511 TTCCGTCGCTGCAACGCT 62.962 61.111 7.75 0.00 38.77 5.07
715 724 3.911155 CTTTCCGTCGCTGCAACGC 62.911 63.158 7.75 0.00 38.77 4.84
716 725 2.170985 CTTTCCGTCGCTGCAACG 59.829 61.111 6.07 6.07 39.78 4.10
717 726 1.204312 GTCTTTCCGTCGCTGCAAC 59.796 57.895 0.00 0.00 0.00 4.17
718 727 1.959226 GGTCTTTCCGTCGCTGCAA 60.959 57.895 0.00 0.00 0.00 4.08
719 728 1.529152 TAGGTCTTTCCGTCGCTGCA 61.529 55.000 0.00 0.00 41.99 4.41
720 729 0.389426 TTAGGTCTTTCCGTCGCTGC 60.389 55.000 0.00 0.00 41.99 5.25
721 730 1.630148 CTTAGGTCTTTCCGTCGCTG 58.370 55.000 0.00 0.00 41.99 5.18
722 731 0.108756 GCTTAGGTCTTTCCGTCGCT 60.109 55.000 0.00 0.00 41.99 4.93
723 732 1.082679 GGCTTAGGTCTTTCCGTCGC 61.083 60.000 0.00 0.00 41.99 5.19
724 733 0.245539 TGGCTTAGGTCTTTCCGTCG 59.754 55.000 0.00 0.00 41.99 5.12
725 734 2.007547 GCTGGCTTAGGTCTTTCCGTC 61.008 57.143 0.00 0.00 41.99 4.79
726 735 0.036294 GCTGGCTTAGGTCTTTCCGT 60.036 55.000 0.00 0.00 41.99 4.69
727 736 0.250513 AGCTGGCTTAGGTCTTTCCG 59.749 55.000 0.00 0.00 41.99 4.30
728 737 1.743996 CAGCTGGCTTAGGTCTTTCC 58.256 55.000 5.57 0.00 34.17 3.13
729 738 1.090728 GCAGCTGGCTTAGGTCTTTC 58.909 55.000 17.12 0.00 40.25 2.62
730 739 0.322906 GGCAGCTGGCTTAGGTCTTT 60.323 55.000 31.40 0.00 44.01 2.52
731 740 1.301293 GGCAGCTGGCTTAGGTCTT 59.699 57.895 31.40 0.00 44.01 3.01
732 741 2.993853 GGCAGCTGGCTTAGGTCT 59.006 61.111 31.40 0.00 44.01 3.85
733 742 2.512515 CGGCAGCTGGCTTAGGTC 60.513 66.667 34.13 6.93 44.01 3.85
734 743 4.785453 GCGGCAGCTGGCTTAGGT 62.785 66.667 34.13 0.00 44.01 3.08
800 809 6.836577 TTTTGAAAAATCCAATTGACGTCC 57.163 33.333 14.12 0.00 0.00 4.79
881 890 2.663852 ACGAGGGTTTGCGGTTCG 60.664 61.111 0.00 0.00 37.31 3.95
886 895 3.081133 CGATCACGAGGGTTTGCG 58.919 61.111 0.00 0.00 42.66 4.85
903 912 1.603172 CCGAGATGGATTAGTGTCCGC 60.603 57.143 0.00 0.00 41.35 5.54
934 943 1.659335 GGACGCGACGTTTGTCTCA 60.659 57.895 15.93 0.00 41.37 3.27
960 973 6.548171 GGAATCCTCGCTCGCTATATATATC 58.452 44.000 0.00 0.00 0.00 1.63
1012 1029 5.381174 TGGCATGGTATATACTGTACGTC 57.619 43.478 12.54 0.56 0.00 4.34
1047 1064 0.038159 GAAGTGGTGACCGTCTCCTG 60.038 60.000 18.18 0.00 31.62 3.86
1079 1099 1.869774 CATCGCTTGCTACTGCCATA 58.130 50.000 0.00 0.00 38.71 2.74
1849 1912 2.122813 AGCCCTAGCCCTGCGTAT 60.123 61.111 0.00 0.00 41.25 3.06
1868 1931 4.735132 CGCCGCCTTCAGGAACGA 62.735 66.667 0.00 0.00 37.39 3.85
1896 1959 0.535335 TCTCCTCGTATGCCACCAAC 59.465 55.000 0.00 0.00 0.00 3.77
1897 1960 1.138859 CATCTCCTCGTATGCCACCAA 59.861 52.381 0.00 0.00 0.00 3.67
1949 2019 7.815549 GCTAAAGTGGAATAATAGAGGACTAGC 59.184 40.741 0.00 0.00 31.78 3.42
1979 2049 9.247126 GCTAAAGTGGAATAAAACCGTTAAAAA 57.753 29.630 0.00 0.00 0.00 1.94
1980 2050 8.631797 AGCTAAAGTGGAATAAAACCGTTAAAA 58.368 29.630 0.00 0.00 0.00 1.52
1981 2051 8.168790 AGCTAAAGTGGAATAAAACCGTTAAA 57.831 30.769 0.00 0.00 0.00 1.52
1982 2052 7.748691 AGCTAAAGTGGAATAAAACCGTTAA 57.251 32.000 0.00 0.00 0.00 2.01
1984 2054 7.933215 ATAGCTAAAGTGGAATAAAACCGTT 57.067 32.000 0.00 0.00 0.00 4.44
1985 2055 7.223387 CGTATAGCTAAAGTGGAATAAAACCGT 59.777 37.037 0.00 0.00 0.00 4.83
1986 2056 7.561556 CGTATAGCTAAAGTGGAATAAAACCG 58.438 38.462 0.00 0.00 0.00 4.44
1987 2057 7.350467 GCGTATAGCTAAAGTGGAATAAAACC 58.650 38.462 0.00 0.00 44.04 3.27
2011 2081 3.831715 AGTAATTTTCAGGCGACTTGC 57.168 42.857 0.00 0.00 40.21 4.01
2012 2082 5.402270 CCAAAAGTAATTTTCAGGCGACTTG 59.598 40.000 0.00 0.00 40.21 3.16
2013 2083 5.508994 CCCAAAAGTAATTTTCAGGCGACTT 60.509 40.000 0.00 0.00 40.21 3.01
2014 2084 4.022329 CCCAAAAGTAATTTTCAGGCGACT 60.022 41.667 0.00 0.00 46.44 4.18
2015 2085 4.234574 CCCAAAAGTAATTTTCAGGCGAC 58.765 43.478 0.00 0.00 0.00 5.19
2016 2086 3.892588 ACCCAAAAGTAATTTTCAGGCGA 59.107 39.130 11.89 0.00 0.00 5.54
2017 2087 4.251543 ACCCAAAAGTAATTTTCAGGCG 57.748 40.909 11.89 3.98 0.00 5.52
2018 2088 6.755206 ACTAACCCAAAAGTAATTTTCAGGC 58.245 36.000 11.89 0.00 0.00 4.85
2019 2089 7.947282 TGACTAACCCAAAAGTAATTTTCAGG 58.053 34.615 10.83 10.83 0.00 3.86
2020 2090 9.981114 ATTGACTAACCCAAAAGTAATTTTCAG 57.019 29.630 0.00 0.00 0.00 3.02
2026 2096 9.554395 CCAAAAATTGACTAACCCAAAAGTAAT 57.446 29.630 0.00 0.00 0.00 1.89
2027 2097 8.759782 TCCAAAAATTGACTAACCCAAAAGTAA 58.240 29.630 0.00 0.00 0.00 2.24
2028 2098 8.198778 GTCCAAAAATTGACTAACCCAAAAGTA 58.801 33.333 0.00 0.00 0.00 2.24
2029 2099 7.045416 GTCCAAAAATTGACTAACCCAAAAGT 58.955 34.615 0.00 0.00 0.00 2.66
2030 2100 7.224557 CAGTCCAAAAATTGACTAACCCAAAAG 59.775 37.037 0.00 0.00 0.00 2.27
2031 2101 7.044798 CAGTCCAAAAATTGACTAACCCAAAA 58.955 34.615 0.00 0.00 0.00 2.44
2032 2102 6.155393 ACAGTCCAAAAATTGACTAACCCAAA 59.845 34.615 0.00 0.00 0.00 3.28
2033 2103 5.659079 ACAGTCCAAAAATTGACTAACCCAA 59.341 36.000 0.00 0.00 0.00 4.12
2034 2104 5.205056 ACAGTCCAAAAATTGACTAACCCA 58.795 37.500 0.00 0.00 0.00 4.51
2035 2105 5.784578 ACAGTCCAAAAATTGACTAACCC 57.215 39.130 0.00 0.00 0.00 4.11
2036 2106 6.801575 TCAACAGTCCAAAAATTGACTAACC 58.198 36.000 0.00 0.00 0.00 2.85
2037 2107 8.871686 ATTCAACAGTCCAAAAATTGACTAAC 57.128 30.769 0.00 0.00 0.00 2.34
2038 2108 9.528018 GAATTCAACAGTCCAAAAATTGACTAA 57.472 29.630 0.00 0.00 0.00 2.24
2039 2109 8.912988 AGAATTCAACAGTCCAAAAATTGACTA 58.087 29.630 8.44 0.00 0.00 2.59
2040 2110 7.785033 AGAATTCAACAGTCCAAAAATTGACT 58.215 30.769 8.44 0.00 0.00 3.41
2041 2111 8.968242 GTAGAATTCAACAGTCCAAAAATTGAC 58.032 33.333 8.44 0.00 0.00 3.18
2042 2112 7.860373 CGTAGAATTCAACAGTCCAAAAATTGA 59.140 33.333 8.44 0.00 0.00 2.57
2043 2113 7.647715 ACGTAGAATTCAACAGTCCAAAAATTG 59.352 33.333 8.44 0.00 0.00 2.32
2044 2114 7.712797 ACGTAGAATTCAACAGTCCAAAAATT 58.287 30.769 8.44 0.00 0.00 1.82
2045 2115 7.012894 TGACGTAGAATTCAACAGTCCAAAAAT 59.987 33.333 8.44 0.00 0.00 1.82
2046 2116 6.316640 TGACGTAGAATTCAACAGTCCAAAAA 59.683 34.615 8.44 0.00 0.00 1.94
2047 2117 5.818336 TGACGTAGAATTCAACAGTCCAAAA 59.182 36.000 8.44 0.00 0.00 2.44
2048 2118 5.361427 TGACGTAGAATTCAACAGTCCAAA 58.639 37.500 8.44 0.00 0.00 3.28
2049 2119 4.951254 TGACGTAGAATTCAACAGTCCAA 58.049 39.130 8.44 0.00 0.00 3.53
2050 2120 4.279922 TCTGACGTAGAATTCAACAGTCCA 59.720 41.667 8.44 2.95 30.84 4.02
2051 2121 4.806330 TCTGACGTAGAATTCAACAGTCC 58.194 43.478 8.44 0.00 30.84 3.85
2052 2122 6.237332 CGAATCTGACGTAGAATTCAACAGTC 60.237 42.308 8.44 11.37 39.30 3.51
2053 2123 5.573282 CGAATCTGACGTAGAATTCAACAGT 59.427 40.000 8.44 2.00 39.30 3.55
2054 2124 5.573282 ACGAATCTGACGTAGAATTCAACAG 59.427 40.000 8.44 9.08 42.17 3.16
2055 2125 5.344933 CACGAATCTGACGTAGAATTCAACA 59.655 40.000 8.44 0.00 42.07 3.33
2056 2126 5.721510 GCACGAATCTGACGTAGAATTCAAC 60.722 44.000 8.44 0.00 42.07 3.18
2057 2127 4.326278 GCACGAATCTGACGTAGAATTCAA 59.674 41.667 8.44 0.00 42.07 2.69
2058 2128 3.857665 GCACGAATCTGACGTAGAATTCA 59.142 43.478 8.44 0.00 42.07 2.57
2059 2129 4.106197 AGCACGAATCTGACGTAGAATTC 58.894 43.478 0.00 0.00 42.07 2.17
2060 2130 4.106197 GAGCACGAATCTGACGTAGAATT 58.894 43.478 0.00 0.00 42.07 2.17
2061 2131 3.128764 TGAGCACGAATCTGACGTAGAAT 59.871 43.478 0.00 0.00 42.07 2.40
2062 2132 2.486592 TGAGCACGAATCTGACGTAGAA 59.513 45.455 0.00 0.00 42.07 2.10
2063 2133 2.081462 TGAGCACGAATCTGACGTAGA 58.919 47.619 0.00 0.00 42.07 2.59
2064 2134 2.544480 TGAGCACGAATCTGACGTAG 57.456 50.000 0.00 0.00 42.07 3.51
2065 2135 4.830826 ATATGAGCACGAATCTGACGTA 57.169 40.909 0.00 0.00 42.07 3.57
2066 2136 3.717400 ATATGAGCACGAATCTGACGT 57.283 42.857 0.00 0.00 44.83 4.34
2067 2137 5.395325 AAAATATGAGCACGAATCTGACG 57.605 39.130 0.00 0.00 0.00 4.35
2088 2158 2.224992 TGCATAGACCAGCCCAGAAAAA 60.225 45.455 0.00 0.00 0.00 1.94
2089 2159 1.354031 TGCATAGACCAGCCCAGAAAA 59.646 47.619 0.00 0.00 0.00 2.29
2090 2160 0.991146 TGCATAGACCAGCCCAGAAA 59.009 50.000 0.00 0.00 0.00 2.52
2091 2161 0.253044 GTGCATAGACCAGCCCAGAA 59.747 55.000 0.00 0.00 0.00 3.02
2092 2162 0.618680 AGTGCATAGACCAGCCCAGA 60.619 55.000 0.00 0.00 0.00 3.86
2093 2163 0.463295 CAGTGCATAGACCAGCCCAG 60.463 60.000 0.00 0.00 0.00 4.45
2094 2164 1.603842 CAGTGCATAGACCAGCCCA 59.396 57.895 0.00 0.00 0.00 5.36
2095 2165 1.821332 GCAGTGCATAGACCAGCCC 60.821 63.158 11.09 0.00 0.00 5.19
2096 2166 0.393537 AAGCAGTGCATAGACCAGCC 60.394 55.000 19.20 0.00 0.00 4.85
2097 2167 1.131883 CAAAGCAGTGCATAGACCAGC 59.868 52.381 19.20 0.00 0.00 4.85
2098 2168 1.741706 CCAAAGCAGTGCATAGACCAG 59.258 52.381 19.20 0.00 0.00 4.00
2099 2169 1.614051 CCCAAAGCAGTGCATAGACCA 60.614 52.381 19.20 0.00 0.00 4.02
2100 2170 1.098050 CCCAAAGCAGTGCATAGACC 58.902 55.000 19.20 0.00 0.00 3.85
2101 2171 0.453390 GCCCAAAGCAGTGCATAGAC 59.547 55.000 19.20 0.00 42.97 2.59
2102 2172 2.872408 GCCCAAAGCAGTGCATAGA 58.128 52.632 19.20 0.00 42.97 1.98
2125 2195 8.748412 CCCAAAATATATGGTCAGTCAAGAAAA 58.252 33.333 6.69 0.00 36.14 2.29
2126 2196 7.893302 ACCCAAAATATATGGTCAGTCAAGAAA 59.107 33.333 6.69 0.00 36.14 2.52
2127 2197 7.410174 ACCCAAAATATATGGTCAGTCAAGAA 58.590 34.615 6.69 0.00 36.14 2.52
2128 2198 6.969043 ACCCAAAATATATGGTCAGTCAAGA 58.031 36.000 6.69 0.00 36.14 3.02
2129 2199 7.264373 GACCCAAAATATATGGTCAGTCAAG 57.736 40.000 12.80 0.00 45.29 3.02
2136 2206 5.607477 TCGACTGACCCAAAATATATGGTC 58.393 41.667 11.36 11.36 45.99 4.02
2137 2207 5.623956 TCGACTGACCCAAAATATATGGT 57.376 39.130 6.69 0.00 36.14 3.55
2138 2208 6.149474 GGAATCGACTGACCCAAAATATATGG 59.851 42.308 0.00 1.28 37.71 2.74
2139 2209 6.936900 AGGAATCGACTGACCCAAAATATATG 59.063 38.462 0.00 0.00 0.00 1.78
2140 2210 7.079451 AGGAATCGACTGACCCAAAATATAT 57.921 36.000 0.00 0.00 0.00 0.86
2141 2211 6.494666 AGGAATCGACTGACCCAAAATATA 57.505 37.500 0.00 0.00 0.00 0.86
2142 2212 5.373812 AGGAATCGACTGACCCAAAATAT 57.626 39.130 0.00 0.00 0.00 1.28
2143 2213 4.837093 AGGAATCGACTGACCCAAAATA 57.163 40.909 0.00 0.00 0.00 1.40
2144 2214 3.721087 AGGAATCGACTGACCCAAAAT 57.279 42.857 0.00 0.00 0.00 1.82
2145 2215 3.502123 AAGGAATCGACTGACCCAAAA 57.498 42.857 0.00 0.00 0.00 2.44
2146 2216 3.581332 ACTAAGGAATCGACTGACCCAAA 59.419 43.478 0.00 0.00 0.00 3.28
2147 2217 3.056107 CACTAAGGAATCGACTGACCCAA 60.056 47.826 0.00 0.00 0.00 4.12
2148 2218 2.496070 CACTAAGGAATCGACTGACCCA 59.504 50.000 0.00 0.00 0.00 4.51
2149 2219 2.159085 CCACTAAGGAATCGACTGACCC 60.159 54.545 0.00 0.00 41.22 4.46
2150 2220 2.159085 CCCACTAAGGAATCGACTGACC 60.159 54.545 0.00 0.00 41.22 4.02
2151 2221 2.738964 GCCCACTAAGGAATCGACTGAC 60.739 54.545 0.00 0.00 41.22 3.51
2152 2222 1.480954 GCCCACTAAGGAATCGACTGA 59.519 52.381 0.00 0.00 41.22 3.41
2153 2223 1.482593 AGCCCACTAAGGAATCGACTG 59.517 52.381 0.00 0.00 41.22 3.51
2154 2224 1.482593 CAGCCCACTAAGGAATCGACT 59.517 52.381 0.00 0.00 41.22 4.18
2155 2225 1.480954 TCAGCCCACTAAGGAATCGAC 59.519 52.381 0.00 0.00 41.22 4.20
2156 2226 1.860641 TCAGCCCACTAAGGAATCGA 58.139 50.000 0.00 0.00 41.22 3.59
2157 2227 2.280628 GTTCAGCCCACTAAGGAATCG 58.719 52.381 0.00 0.00 41.22 3.34
2158 2228 2.644676 GGTTCAGCCCACTAAGGAATC 58.355 52.381 0.00 0.00 41.22 2.52
2159 2229 2.808906 GGTTCAGCCCACTAAGGAAT 57.191 50.000 0.00 0.00 41.22 3.01
2180 2250 1.315257 GGCAGGGTCGCACATGAAAT 61.315 55.000 0.00 0.00 0.00 2.17
2181 2251 1.971167 GGCAGGGTCGCACATGAAA 60.971 57.895 0.00 0.00 0.00 2.69
2182 2252 2.359850 GGCAGGGTCGCACATGAA 60.360 61.111 0.00 0.00 0.00 2.57
2183 2253 2.410322 AAAGGCAGGGTCGCACATGA 62.410 55.000 0.00 0.00 0.00 3.07
2184 2254 1.926511 GAAAGGCAGGGTCGCACATG 61.927 60.000 0.00 0.00 0.00 3.21
2185 2255 1.675641 GAAAGGCAGGGTCGCACAT 60.676 57.895 0.00 0.00 0.00 3.21
2186 2256 2.281484 GAAAGGCAGGGTCGCACA 60.281 61.111 0.00 0.00 0.00 4.57
2187 2257 3.056328 GGAAAGGCAGGGTCGCAC 61.056 66.667 0.00 0.00 0.00 5.34
2188 2258 4.344865 GGGAAAGGCAGGGTCGCA 62.345 66.667 0.00 0.00 0.00 5.10
2189 2259 3.569200 AAGGGAAAGGCAGGGTCGC 62.569 63.158 0.00 0.00 0.00 5.19
2190 2260 0.960861 GAAAGGGAAAGGCAGGGTCG 60.961 60.000 0.00 0.00 0.00 4.79
2191 2261 0.405973 AGAAAGGGAAAGGCAGGGTC 59.594 55.000 0.00 0.00 0.00 4.46
2192 2262 0.405973 GAGAAAGGGAAAGGCAGGGT 59.594 55.000 0.00 0.00 0.00 4.34
2193 2263 0.701147 AGAGAAAGGGAAAGGCAGGG 59.299 55.000 0.00 0.00 0.00 4.45
2194 2264 1.632920 AGAGAGAAAGGGAAAGGCAGG 59.367 52.381 0.00 0.00 0.00 4.85
2195 2265 3.431673 AAGAGAGAAAGGGAAAGGCAG 57.568 47.619 0.00 0.00 0.00 4.85
2196 2266 3.884037 AAAGAGAGAAAGGGAAAGGCA 57.116 42.857 0.00 0.00 0.00 4.75
2197 2267 6.842437 AAATAAAGAGAGAAAGGGAAAGGC 57.158 37.500 0.00 0.00 0.00 4.35
2198 2268 8.731605 GTGTAAATAAAGAGAGAAAGGGAAAGG 58.268 37.037 0.00 0.00 0.00 3.11
2199 2269 9.508642 AGTGTAAATAAAGAGAGAAAGGGAAAG 57.491 33.333 0.00 0.00 0.00 2.62
2202 2272 9.322769 ACTAGTGTAAATAAAGAGAGAAAGGGA 57.677 33.333 0.00 0.00 0.00 4.20
2220 2290 3.119029 GGCACGTCCCATTTACTAGTGTA 60.119 47.826 5.39 0.00 0.00 2.90
2222 2292 2.277084 GGCACGTCCCATTTACTAGTG 58.723 52.381 5.39 0.00 0.00 2.74
2726 3285 5.348451 ACAGTGACAAACAAAGTGAAAATGC 59.652 36.000 0.00 0.00 0.00 3.56
2783 3358 2.495155 AAGCATGTGATGGTGTAGCA 57.505 45.000 0.00 0.00 41.46 3.49
2841 3839 1.449246 CACCAGGAGTGCTAGCAGC 60.449 63.158 20.03 13.34 40.28 5.25
2893 3891 5.296283 CACTATCCAGAAATTTCCAGCAGAG 59.704 44.000 14.61 8.02 0.00 3.35
2935 3939 2.426024 GCATGCATGTGATTCTCCTTGT 59.574 45.455 26.79 0.00 0.00 3.16
2995 4002 2.117206 ATTTCCCCGTGCTGCCAA 59.883 55.556 0.00 0.00 0.00 4.52
3015 4022 1.983481 ATTGCGGGGATTTGCTGCA 60.983 52.632 0.00 0.00 0.00 4.41
3028 4035 1.888215 ATCTGATGGCCTACATTGCG 58.112 50.000 3.32 0.00 40.72 4.85
3083 4108 5.968528 AATTTAATGGCTTGTGTTACCGA 57.031 34.783 0.00 0.00 0.00 4.69
3180 4207 8.157183 CAGAAAACAAAAGCAAAAGCAAAAATG 58.843 29.630 0.00 0.00 0.00 2.32
3181 4208 7.866898 ACAGAAAACAAAAGCAAAAGCAAAAAT 59.133 25.926 0.00 0.00 0.00 1.82
3182 4209 7.199078 ACAGAAAACAAAAGCAAAAGCAAAAA 58.801 26.923 0.00 0.00 0.00 1.94
3183 4210 6.733145 ACAGAAAACAAAAGCAAAAGCAAAA 58.267 28.000 0.00 0.00 0.00 2.44
3187 4214 7.591057 AGAAAAACAGAAAACAAAAGCAAAAGC 59.409 29.630 0.00 0.00 0.00 3.51
3188 4215 9.449550 AAGAAAAACAGAAAACAAAAGCAAAAG 57.550 25.926 0.00 0.00 0.00 2.27
3189 4216 9.794685 AAAGAAAAACAGAAAACAAAAGCAAAA 57.205 22.222 0.00 0.00 0.00 2.44
3233 4260 5.364157 ACCCTAAAATAGCCACACACAAAAA 59.636 36.000 0.00 0.00 0.00 1.94
3234 4261 4.896482 ACCCTAAAATAGCCACACACAAAA 59.104 37.500 0.00 0.00 0.00 2.44
3235 4262 4.279671 CACCCTAAAATAGCCACACACAAA 59.720 41.667 0.00 0.00 0.00 2.83
3236 4263 3.823873 CACCCTAAAATAGCCACACACAA 59.176 43.478 0.00 0.00 0.00 3.33
3237 4264 3.181438 ACACCCTAAAATAGCCACACACA 60.181 43.478 0.00 0.00 0.00 3.72
3238 4265 3.418047 ACACCCTAAAATAGCCACACAC 58.582 45.455 0.00 0.00 0.00 3.82
3239 4266 3.799432 ACACCCTAAAATAGCCACACA 57.201 42.857 0.00 0.00 0.00 3.72
3240 4267 4.521256 TCAAACACCCTAAAATAGCCACAC 59.479 41.667 0.00 0.00 0.00 3.82
3241 4268 4.730966 TCAAACACCCTAAAATAGCCACA 58.269 39.130 0.00 0.00 0.00 4.17
3242 4269 5.417580 TCATCAAACACCCTAAAATAGCCAC 59.582 40.000 0.00 0.00 0.00 5.01
3243 4270 5.575157 TCATCAAACACCCTAAAATAGCCA 58.425 37.500 0.00 0.00 0.00 4.75
3244 4271 5.652452 ACTCATCAAACACCCTAAAATAGCC 59.348 40.000 0.00 0.00 0.00 3.93
3245 4272 6.151144 ACACTCATCAAACACCCTAAAATAGC 59.849 38.462 0.00 0.00 0.00 2.97
3246 4273 7.687941 ACACTCATCAAACACCCTAAAATAG 57.312 36.000 0.00 0.00 0.00 1.73
3247 4274 9.575868 TTTACACTCATCAAACACCCTAAAATA 57.424 29.630 0.00 0.00 0.00 1.40
3248 4275 8.472007 TTTACACTCATCAAACACCCTAAAAT 57.528 30.769 0.00 0.00 0.00 1.82
3249 4276 7.883391 TTTACACTCATCAAACACCCTAAAA 57.117 32.000 0.00 0.00 0.00 1.52
3250 4277 7.504238 ACATTTACACTCATCAAACACCCTAAA 59.496 33.333 0.00 0.00 0.00 1.85
3251 4278 7.001674 ACATTTACACTCATCAAACACCCTAA 58.998 34.615 0.00 0.00 0.00 2.69
3252 4279 6.539173 ACATTTACACTCATCAAACACCCTA 58.461 36.000 0.00 0.00 0.00 3.53
3253 4280 5.385198 ACATTTACACTCATCAAACACCCT 58.615 37.500 0.00 0.00 0.00 4.34
3254 4281 5.705609 ACATTTACACTCATCAAACACCC 57.294 39.130 0.00 0.00 0.00 4.61
3255 4282 8.941977 TGTATACATTTACACTCATCAAACACC 58.058 33.333 0.08 0.00 0.00 4.16
3256 4283 9.755064 GTGTATACATTTACACTCATCAAACAC 57.245 33.333 9.18 0.00 45.48 3.32
3337 4364 9.486497 TGCATTGAAATTGCACTTTTTCTAATA 57.514 25.926 3.32 0.00 33.87 0.98
3338 4365 8.380743 TGCATTGAAATTGCACTTTTTCTAAT 57.619 26.923 3.32 5.93 33.87 1.73
3339 4366 7.783090 TGCATTGAAATTGCACTTTTTCTAA 57.217 28.000 3.32 4.23 33.87 2.10
3340 4367 7.783090 TTGCATTGAAATTGCACTTTTTCTA 57.217 28.000 3.32 3.57 38.37 2.10
3341 4368 6.680874 TTGCATTGAAATTGCACTTTTTCT 57.319 29.167 3.32 0.00 38.37 2.52
3342 4369 6.968335 AGTTTGCATTGAAATTGCACTTTTTC 59.032 30.769 3.32 6.30 38.37 2.29
3343 4370 6.854778 AGTTTGCATTGAAATTGCACTTTTT 58.145 28.000 3.32 0.00 38.37 1.94
3344 4371 6.439675 AGTTTGCATTGAAATTGCACTTTT 57.560 29.167 3.32 0.00 38.37 2.27
3345 4372 5.276963 CGAGTTTGCATTGAAATTGCACTTT 60.277 36.000 1.08 1.08 38.37 2.66
3346 4373 4.209703 CGAGTTTGCATTGAAATTGCACTT 59.790 37.500 0.00 0.00 38.37 3.16
3347 4374 3.737266 CGAGTTTGCATTGAAATTGCACT 59.263 39.130 0.00 0.00 38.37 4.40
3348 4375 3.490526 ACGAGTTTGCATTGAAATTGCAC 59.509 39.130 0.00 0.00 38.37 4.57
3349 4376 3.715495 ACGAGTTTGCATTGAAATTGCA 58.285 36.364 0.00 0.00 36.72 4.08
3350 4377 4.201391 CGTACGAGTTTGCATTGAAATTGC 60.201 41.667 10.44 0.00 0.00 3.56
3351 4378 4.201391 GCGTACGAGTTTGCATTGAAATTG 60.201 41.667 21.65 0.00 0.00 2.32
3352 4379 3.911964 GCGTACGAGTTTGCATTGAAATT 59.088 39.130 21.65 0.00 0.00 1.82
3353 4380 3.058570 TGCGTACGAGTTTGCATTGAAAT 60.059 39.130 21.65 0.00 31.31 2.17
3354 4381 2.288186 TGCGTACGAGTTTGCATTGAAA 59.712 40.909 21.65 0.00 31.31 2.69
3355 4382 1.867865 TGCGTACGAGTTTGCATTGAA 59.132 42.857 21.65 0.00 31.31 2.69
3356 4383 1.503294 TGCGTACGAGTTTGCATTGA 58.497 45.000 21.65 0.00 31.31 2.57
3357 4384 2.308347 TTGCGTACGAGTTTGCATTG 57.692 45.000 21.65 0.00 37.17 2.82
3358 4385 3.552604 AATTGCGTACGAGTTTGCATT 57.447 38.095 21.65 0.00 37.17 3.56
3359 4386 3.188460 AGAAATTGCGTACGAGTTTGCAT 59.812 39.130 21.65 0.00 37.17 3.96
3360 4387 2.546368 AGAAATTGCGTACGAGTTTGCA 59.454 40.909 21.65 2.66 35.15 4.08
3361 4388 3.183237 AGAAATTGCGTACGAGTTTGC 57.817 42.857 21.65 6.90 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.