Multiple sequence alignment - TraesCS5A01G276600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G276600 chr5A 100.000 5427 0 0 1 5427 485823317 485828743 0.000000e+00 10022
1 TraesCS5A01G276600 chr5D 91.154 5200 271 76 1 5121 384848193 384853282 0.000000e+00 6879
2 TraesCS5A01G276600 chr5D 93.103 290 13 2 5138 5427 384853275 384853557 8.410000e-113 418
3 TraesCS5A01G276600 chr5B 94.555 1102 49 5 1914 3005 462145812 462144712 0.000000e+00 1692
4 TraesCS5A01G276600 chr5B 89.332 1378 87 28 440 1804 462147827 462146497 0.000000e+00 1676
5 TraesCS5A01G276600 chr5B 95.881 704 29 0 3114 3817 462144715 462144012 0.000000e+00 1140
6 TraesCS5A01G276600 chr5B 94.624 558 21 5 3822 4370 462143889 462143332 0.000000e+00 856
7 TraesCS5A01G276600 chr5B 92.537 268 14 3 4973 5238 462143064 462142801 3.970000e-101 379
8 TraesCS5A01G276600 chr5B 93.243 222 14 1 5207 5427 462142792 462142571 5.240000e-85 326
9 TraesCS5A01G276600 chr5B 87.442 215 14 8 4376 4585 462143289 462143083 9.090000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G276600 chr5A 485823317 485828743 5426 False 10022.000000 10022 100.000000 1 5427 1 chr5A.!!$F1 5426
1 TraesCS5A01G276600 chr5D 384848193 384853557 5364 False 3648.500000 6879 92.128500 1 5427 2 chr5D.!!$F1 5426
2 TraesCS5A01G276600 chr5B 462142571 462147827 5256 True 900.571429 1692 92.516286 440 5427 7 chr5B.!!$R1 4987


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 430 0.444260 GTGCTTCGCTTAGAGTTGGC 59.556 55.0 0.00 0.0 0.00 4.52 F
900 934 0.613853 ACCCACTTTCTCCGGATCGA 60.614 55.0 3.57 0.0 0.00 3.59 F
1444 1496 0.240945 CTGCATCGTTTGGTTGGTCC 59.759 55.0 0.00 0.0 0.00 4.46 F
1880 2538 0.109272 CTGCGACTACGAGCTTTCCA 60.109 55.0 0.00 0.0 42.66 3.53 F
2093 2751 0.545309 CCCTGTCTCCCAGTCCTTGA 60.545 60.0 0.00 0.0 39.74 3.02 F
3471 4140 0.886490 CTGGGCTCAAACTGAACGCT 60.886 55.0 0.00 0.0 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 1494 0.106469 AGCGCTCTATGGAGTCTGGA 60.106 55.000 2.64 0.00 41.38 3.86 R
1861 2519 0.109272 TGGAAAGCTCGTAGTCGCAG 60.109 55.000 0.00 0.00 36.96 5.18 R
3260 3929 0.324943 GGCTGGCTTCTTAGTGGTCA 59.675 55.000 0.00 0.00 0.00 4.02 R
3851 4638 0.829990 TCTCAGCCGGCATTATGTCA 59.170 50.000 31.54 6.10 0.00 3.58 R
4008 4795 2.191641 GATCTGGGTCAGGCCTGC 59.808 66.667 28.91 21.69 37.43 4.85 R
4810 5653 0.251474 ACTGATTGCTGGTGCCATGT 60.251 50.000 0.00 0.00 38.71 3.21 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.430248 TGCTCATGAATGATGGCACT 57.570 45.000 0.00 0.00 34.93 4.40
40 41 3.064324 GATGGCACTGGCACACCC 61.064 66.667 7.57 0.00 41.84 4.61
83 84 6.002082 ACCCTCTTAATGGTAGTTTCACAAC 58.998 40.000 0.00 0.00 31.61 3.32
131 132 3.780850 CCTCCAAGGTAATCCTACAAGGT 59.219 47.826 0.00 0.00 44.35 3.50
195 197 6.237313 AGTGCGTTTAAATCTACAAGGTTC 57.763 37.500 0.00 0.00 0.00 3.62
197 199 4.152759 TGCGTTTAAATCTACAAGGTTCGG 59.847 41.667 0.00 0.00 0.00 4.30
212 214 4.470602 AGGTTCGGAAAAAGGTCAAAGAT 58.529 39.130 0.00 0.00 0.00 2.40
312 314 5.446143 AGCCAAATAAAATGTTCGACACA 57.554 34.783 3.49 3.49 40.71 3.72
374 376 3.192633 GCCCAAGGAACGAAACATGTATT 59.807 43.478 0.00 0.00 0.00 1.89
384 386 6.668541 ACGAAACATGTATTGAATGAGAGG 57.331 37.500 0.00 0.00 0.00 3.69
385 387 6.406370 ACGAAACATGTATTGAATGAGAGGA 58.594 36.000 0.00 0.00 0.00 3.71
386 388 7.050377 ACGAAACATGTATTGAATGAGAGGAT 58.950 34.615 0.00 0.00 0.00 3.24
387 389 7.225538 ACGAAACATGTATTGAATGAGAGGATC 59.774 37.037 0.00 0.00 0.00 3.36
428 430 0.444260 GTGCTTCGCTTAGAGTTGGC 59.556 55.000 0.00 0.00 0.00 4.52
437 439 2.810400 GCTTAGAGTTGGCCAGAACACA 60.810 50.000 5.11 0.00 0.00 3.72
464 466 8.559536 CGTCCAATTATTGTTATAGACATGCTT 58.440 33.333 4.15 0.00 38.26 3.91
546 548 7.483375 TCTCGACAAAACAAACATAAACAAGTG 59.517 33.333 0.00 0.00 0.00 3.16
547 549 6.034044 TCGACAAAACAAACATAAACAAGTGC 59.966 34.615 0.00 0.00 0.00 4.40
549 551 5.864474 ACAAAACAAACATAAACAAGTGCGA 59.136 32.000 0.00 0.00 0.00 5.10
553 555 5.646606 ACAAACATAAACAAGTGCGACTTT 58.353 33.333 0.00 0.00 36.03 2.66
563 565 3.455619 AGTGCGACTTTAGCAATTTCG 57.544 42.857 0.00 0.00 46.97 3.46
569 571 3.543494 CGACTTTAGCAATTTCGCAATGG 59.457 43.478 0.00 0.00 0.00 3.16
571 573 5.132897 ACTTTAGCAATTTCGCAATGGAA 57.867 34.783 0.00 0.00 0.00 3.53
577 579 6.064846 AGCAATTTCGCAATGGAACTATAG 57.935 37.500 0.00 0.00 0.00 1.31
604 606 7.828712 AGTATCCCATAAATAAGAGTCTACGC 58.171 38.462 0.00 0.00 0.00 4.42
624 626 2.033151 GCGGCGTAATTTATCCTCACAC 60.033 50.000 9.37 0.00 0.00 3.82
629 631 5.057149 GCGTAATTTATCCTCACACCTCAT 58.943 41.667 0.00 0.00 0.00 2.90
630 632 5.527582 GCGTAATTTATCCTCACACCTCATT 59.472 40.000 0.00 0.00 0.00 2.57
634 636 7.781324 AATTTATCCTCACACCTCATTGTTT 57.219 32.000 0.00 0.00 0.00 2.83
637 639 4.437682 TCCTCACACCTCATTGTTTCTT 57.562 40.909 0.00 0.00 0.00 2.52
667 669 4.142773 CCGAAAAAGCCGTAGCAGAAAATA 60.143 41.667 0.00 0.00 43.56 1.40
671 673 3.199880 AGCCGTAGCAGAAAATAGCAT 57.800 42.857 0.00 0.00 43.56 3.79
679 681 7.360946 CCGTAGCAGAAAATAGCATATAAACCC 60.361 40.741 0.00 0.00 0.00 4.11
684 686 5.768164 AGAAAATAGCATATAAACCCACCGG 59.232 40.000 0.00 0.00 0.00 5.28
778 808 5.846164 AGAAAATGGACCCCTCAAAGAAAAT 59.154 36.000 0.00 0.00 0.00 1.82
779 809 5.488262 AAATGGACCCCTCAAAGAAAATG 57.512 39.130 0.00 0.00 0.00 2.32
782 813 3.116939 TGGACCCCTCAAAGAAAATGGAA 60.117 43.478 0.00 0.00 0.00 3.53
797 828 2.488204 TGGAAAATGGAGCACGATGA 57.512 45.000 0.00 0.00 0.00 2.92
817 848 1.615392 AGAAGCACAATTGGCAGGTTC 59.385 47.619 21.70 21.70 38.41 3.62
864 898 1.694696 CCACTAGGCCACTAATCTCCC 59.305 57.143 5.01 0.00 0.00 4.30
900 934 0.613853 ACCCACTTTCTCCGGATCGA 60.614 55.000 3.57 0.00 0.00 3.59
914 948 1.536284 GGATCGAGGCTTAACAGGACG 60.536 57.143 0.00 0.00 0.00 4.79
1014 1061 0.829333 CCATCTCCAGTCCAGTCCAG 59.171 60.000 0.00 0.00 0.00 3.86
1022 1069 4.316823 TCCAGTCCAGACGCCCCT 62.317 66.667 0.00 0.00 36.20 4.79
1100 1147 4.056125 CTCGCCTGTCGGTGCTCA 62.056 66.667 0.00 0.00 40.70 4.26
1346 1397 2.887152 CAGGGGTGTTCTTTTTCTGGAG 59.113 50.000 0.00 0.00 0.00 3.86
1442 1494 1.686355 TTCTGCATCGTTTGGTTGGT 58.314 45.000 0.00 0.00 0.00 3.67
1444 1496 0.240945 CTGCATCGTTTGGTTGGTCC 59.759 55.000 0.00 0.00 0.00 4.46
1453 1505 3.180449 TGGTTGGTCCAGACTCCAT 57.820 52.632 0.00 0.00 41.93 3.41
1491 1543 1.620822 GGTGATTTTGCCTCTGTGGT 58.379 50.000 0.00 0.00 38.35 4.16
1586 1638 0.882484 TCAACGGATTTGCTGTCGCA 60.882 50.000 0.00 0.00 46.24 5.10
1687 1750 5.059833 GTGATTTGTGGATCTAAGCTAGGG 58.940 45.833 0.00 0.00 0.00 3.53
1723 1786 1.337071 TCGAGAGTTGTGTGTCAGACC 59.663 52.381 0.00 0.00 0.00 3.85
1842 2500 3.135712 TCAGAAGCTTGGTTTCTGTGGTA 59.864 43.478 18.43 2.91 46.12 3.25
1845 2503 5.010012 CAGAAGCTTGGTTTCTGTGGTAATT 59.990 40.000 2.10 0.00 42.87 1.40
1864 2522 9.528489 TGGTAATTAATAAATTATCCCTCCTGC 57.472 33.333 0.00 0.00 37.72 4.85
1865 2523 8.674607 GGTAATTAATAAATTATCCCTCCTGCG 58.325 37.037 0.00 0.00 39.23 5.18
1866 2524 9.444600 GTAATTAATAAATTATCCCTCCTGCGA 57.555 33.333 0.00 0.00 39.23 5.10
1878 2536 0.170561 TCCTGCGACTACGAGCTTTC 59.829 55.000 0.00 0.00 42.66 2.62
1880 2538 0.109272 CTGCGACTACGAGCTTTCCA 60.109 55.000 0.00 0.00 42.66 3.53
1907 2565 0.773644 AGCAGAGTTTGTGGGGACAT 59.226 50.000 0.00 0.00 46.14 3.06
1908 2566 1.985159 AGCAGAGTTTGTGGGGACATA 59.015 47.619 0.00 0.00 46.14 2.29
1913 2571 4.991056 CAGAGTTTGTGGGGACATATATCG 59.009 45.833 0.00 0.00 46.14 2.92
1921 2579 4.755123 GTGGGGACATATATCGGTCAAAAG 59.245 45.833 8.45 0.00 46.14 2.27
1935 2593 4.150451 CGGTCAAAAGAAACCATCAATTGC 59.850 41.667 0.00 0.00 35.13 3.56
1960 2618 6.535963 AAGATAAAAATGCAGAAGGGGAAG 57.464 37.500 0.00 0.00 0.00 3.46
2038 2696 2.057922 AGACAGTGAGGGTTGTCCATT 58.942 47.619 0.00 0.00 43.64 3.16
2055 2713 8.461222 GTTGTCCATTTCATGAATCACTATCAA 58.539 33.333 9.40 6.88 0.00 2.57
2069 2727 6.106648 TCACTATCAATCCTCCAGCTTATG 57.893 41.667 0.00 0.00 0.00 1.90
2093 2751 0.545309 CCCTGTCTCCCAGTCCTTGA 60.545 60.000 0.00 0.00 39.74 3.02
2106 2764 4.384056 CAGTCCTTGACTTGTTCAGATGT 58.616 43.478 0.00 0.00 41.37 3.06
2152 2810 9.696917 ACTGCTATTTTTAACTGATGGAAAAAG 57.303 29.630 0.00 0.00 35.98 2.27
2225 2884 3.357079 CAACAGCTGGCCGTGGAC 61.357 66.667 19.93 0.00 0.00 4.02
2321 2986 2.288518 GGCTACTGAGGAGATTAAGCCG 60.289 54.545 0.00 0.00 38.74 5.52
2415 3080 8.833231 ATTACCGATTAATCTGGTTACTCATG 57.167 34.615 26.10 4.97 36.01 3.07
2422 3087 3.057969 TCTGGTTACTCATGCTTGTGG 57.942 47.619 6.61 1.39 0.00 4.17
2481 3147 3.624777 CTTGTCATTGACTATTGGCCCT 58.375 45.455 17.26 0.00 33.15 5.19
2503 3169 4.450976 TGAATACCATGCATCACAGGTAC 58.549 43.478 14.11 5.53 35.92 3.34
2574 3240 7.981225 AGAAAATCAGCTTATGTTTGTGTGTTT 59.019 29.630 0.00 0.00 0.00 2.83
2592 3258 1.422531 TTGCCCTTTGGTTGCAGATT 58.577 45.000 0.00 0.00 36.21 2.40
2689 3355 6.436532 AGGAAAGAGTCGGTATGTTTCTAGAA 59.563 38.462 0.00 0.00 0.00 2.10
2692 3358 9.152595 GAAAGAGTCGGTATGTTTCTAGAAAAT 57.847 33.333 19.30 15.84 31.33 1.82
2738 3405 2.709934 AGATATGGCTTCCTGCAGACAT 59.290 45.455 17.39 6.23 45.23 3.06
2780 3447 4.824479 TTCACCACATGAGCATCTAGAA 57.176 40.909 0.00 0.00 38.99 2.10
2838 3505 5.604758 TTTCCCACAAATGAACATCAACA 57.395 34.783 0.00 0.00 0.00 3.33
2866 3533 5.598830 TCTTAAGACAACTCTGGTGACTCTT 59.401 40.000 0.00 0.00 0.00 2.85
2931 3598 9.104965 TGTGTACTTAGTATGGATAAACAATGC 57.895 33.333 0.00 0.00 0.00 3.56
2967 3634 4.342378 TGTCATATCTCTACTGTTCTGCCC 59.658 45.833 0.00 0.00 0.00 5.36
2981 3650 7.906327 ACTGTTCTGCCCAAATAAATACATTT 58.094 30.769 0.00 0.00 0.00 2.32
3079 3748 6.486253 TCACTGTGCTTTCATTTCATAGAC 57.514 37.500 2.12 0.00 0.00 2.59
3080 3749 6.233434 TCACTGTGCTTTCATTTCATAGACT 58.767 36.000 2.12 0.00 0.00 3.24
3083 3752 4.631377 TGTGCTTTCATTTCATAGACTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3086 3755 5.525012 TGCTTTCATTTCATAGACTCCGATG 59.475 40.000 0.00 0.00 0.00 3.84
3099 3768 6.037786 AGACTCCGATGATTGTTACTTTGA 57.962 37.500 0.00 0.00 0.00 2.69
3207 3876 7.214467 AGACATGTACGATGTGGAAAAATTT 57.786 32.000 13.42 0.00 31.52 1.82
3260 3929 8.763601 AGTAGTAGATAAACTTCCTGCTGAATT 58.236 33.333 0.00 0.00 31.06 2.17
3298 3967 5.172934 CAGCCGTTATTAGAGTACCAAACA 58.827 41.667 0.00 0.00 0.00 2.83
3356 4025 2.100749 CCGCCTTCCAAAAGAACAGTTT 59.899 45.455 0.00 0.00 34.14 2.66
3471 4140 0.886490 CTGGGCTCAAACTGAACGCT 60.886 55.000 0.00 0.00 0.00 5.07
3544 4213 1.728490 GAAATCGGATGGCAGGGTGC 61.728 60.000 0.00 0.00 44.08 5.01
3789 4458 9.614792 AACTCATCCAGTACCATTTAATTAGTC 57.385 33.333 0.00 0.00 32.30 2.59
3793 4462 4.210537 CCAGTACCATTTAATTAGTCCGCG 59.789 45.833 0.00 0.00 0.00 6.46
3851 4638 3.759581 ACAATCTGTCTTTGTGCAGGAT 58.240 40.909 0.00 0.00 36.02 3.24
3914 4701 1.137086 GGCGATTCAGACCTAGCAAGA 59.863 52.381 0.00 0.00 0.00 3.02
3930 4717 3.151022 GAGCCCTGGACCTCGAGG 61.151 72.222 30.11 30.11 40.98 4.63
3950 4737 3.898627 CTGCTCGCAGACCGACGTT 62.899 63.158 13.43 0.00 46.30 3.99
4008 4795 2.335369 CCGGTAAGAGGATCGCGG 59.665 66.667 6.13 0.00 42.67 6.46
4129 4919 3.551863 GCCTACTCATGCTACTGCTAGTG 60.552 52.174 0.00 0.00 40.48 2.74
4130 4920 2.593346 ACTCATGCTACTGCTAGTGC 57.407 50.000 0.00 0.00 40.48 4.40
4131 4921 2.106566 ACTCATGCTACTGCTAGTGCT 58.893 47.619 0.00 0.00 40.48 4.40
4216 5016 4.568072 TGGGTAGATATGCAAGTGTTGT 57.432 40.909 0.00 0.00 0.00 3.32
4223 5023 6.875948 AGATATGCAAGTGTTGTTGTTGTA 57.124 33.333 0.00 0.00 0.00 2.41
4224 5024 6.668323 AGATATGCAAGTGTTGTTGTTGTAC 58.332 36.000 0.00 0.00 0.00 2.90
4329 5129 0.388649 GTGTGCTACAGAGTGGACCG 60.389 60.000 0.00 0.00 0.00 4.79
4389 5227 4.700213 GTGCCTCATGTACCAAGTTGTATT 59.300 41.667 1.45 0.00 0.00 1.89
4390 5228 4.699735 TGCCTCATGTACCAAGTTGTATTG 59.300 41.667 1.45 0.00 0.00 1.90
4391 5229 4.438744 GCCTCATGTACCAAGTTGTATTGC 60.439 45.833 1.45 0.00 0.00 3.56
4392 5230 4.943705 CCTCATGTACCAAGTTGTATTGCT 59.056 41.667 1.45 0.00 0.00 3.91
4393 5231 5.415701 CCTCATGTACCAAGTTGTATTGCTT 59.584 40.000 1.45 0.00 0.00 3.91
4394 5232 6.597672 CCTCATGTACCAAGTTGTATTGCTTA 59.402 38.462 1.45 0.00 0.00 3.09
4449 5287 6.215845 GCAGAAATTGGCTCTGAAGTTTTTA 58.784 36.000 9.37 0.00 42.51 1.52
4480 5318 7.856145 ATGGAAGATGTGATTTCTGTCTAAC 57.144 36.000 0.00 0.00 0.00 2.34
4482 5320 7.223584 TGGAAGATGTGATTTCTGTCTAACAA 58.776 34.615 0.00 0.00 0.00 2.83
4513 5353 9.282247 GCAAGTTTATCTATTGATGACACTTTG 57.718 33.333 0.00 2.32 34.32 2.77
4521 5361 5.633830 ATTGATGACACTTTGTGGTCATC 57.366 39.130 21.61 21.61 43.15 2.92
4530 5370 4.153655 CACTTTGTGGTCATCATCACTCTG 59.846 45.833 0.00 0.00 35.15 3.35
4552 5395 9.424319 CTCTGTTGCAGTTTCTCTACTTAAATA 57.576 33.333 0.00 0.00 32.61 1.40
4594 5437 7.307930 GCAAGAAAAACTAACCCAATTCAATGG 60.308 37.037 0.00 0.00 40.35 3.16
4600 5443 1.648116 ACCCAATTCAATGGCTTGCT 58.352 45.000 0.00 0.00 39.26 3.91
4612 5455 2.105124 GCTTGCTGCCTTCATCTCC 58.895 57.895 0.00 0.00 35.15 3.71
4626 5469 1.265635 CATCTCCGTCTCCGTCTCATC 59.734 57.143 0.00 0.00 0.00 2.92
4641 5484 1.227497 CATCTTCTCCTCGCCTGCC 60.227 63.158 0.00 0.00 0.00 4.85
4683 5526 3.503363 GCCACTCATCAGCGGTGC 61.503 66.667 10.38 0.00 0.00 5.01
4718 5561 0.180171 ATGCGCACTGGGCTACATTA 59.820 50.000 14.90 0.00 42.10 1.90
4753 5596 5.256474 AGCTTAATGACAATAGTTGCTGGT 58.744 37.500 0.00 0.00 0.00 4.00
4755 5598 6.316390 AGCTTAATGACAATAGTTGCTGGTAC 59.684 38.462 0.00 0.00 0.00 3.34
4792 5635 3.831911 TCCAACAGAATAAGCAAAAGGGG 59.168 43.478 0.00 0.00 0.00 4.79
4794 5637 2.179427 ACAGAATAAGCAAAAGGGGCC 58.821 47.619 0.00 0.00 0.00 5.80
4795 5638 2.225369 ACAGAATAAGCAAAAGGGGCCT 60.225 45.455 0.84 0.00 0.00 5.19
4825 5668 1.466856 CTACACATGGCACCAGCAAT 58.533 50.000 0.00 0.00 44.61 3.56
4837 5680 2.030540 CACCAGCAATCAGTGGAAACAG 60.031 50.000 0.00 0.00 44.46 3.16
4841 5684 1.668047 GCAATCAGTGGAAACAGCTGC 60.668 52.381 15.27 0.00 44.46 5.25
4862 5705 3.192466 CAACTTGCAGCAAAAGAAAGCT 58.808 40.909 9.65 0.00 42.94 3.74
4871 5714 5.938438 AGCAAAAGAAAGCTGTTCTCTAG 57.062 39.130 10.34 6.03 40.13 2.43
4873 5716 4.023707 GCAAAAGAAAGCTGTTCTCTAGCA 60.024 41.667 10.34 0.00 43.53 3.49
4874 5717 5.687828 CAAAAGAAAGCTGTTCTCTAGCAG 58.312 41.667 10.34 0.00 43.53 4.24
4883 5727 2.872245 TGTTCTCTAGCAGCACAACAAC 59.128 45.455 0.00 0.00 0.00 3.32
4943 5787 2.952310 CCTAACCCCGTACAGTACTACC 59.048 54.545 9.10 0.00 0.00 3.18
4944 5788 1.463674 AACCCCGTACAGTACTACCG 58.536 55.000 9.10 0.00 0.00 4.02
4947 5791 1.940613 CCCCGTACAGTACTACCGTAC 59.059 57.143 9.10 10.52 45.04 3.67
4964 5808 9.454859 ACTACCGTACTTATTTTGTAGACTACT 57.545 33.333 13.67 0.00 32.19 2.57
5051 5896 3.172339 CCTCTCTCTCATTCCCTATGGG 58.828 54.545 0.00 0.00 46.11 4.00
5077 5922 1.823899 GCGCCCAATTCTACAGGGG 60.824 63.158 0.00 0.00 43.04 4.79
5108 5953 0.823460 CCCTCTCTGAAGCTCCAGTC 59.177 60.000 0.00 0.00 35.71 3.51
5153 5999 2.481104 CCGTTTGCAGCTTCTCCAAAAA 60.481 45.455 0.00 0.00 31.11 1.94
5229 6075 1.897133 AGCACACAATGGAATGCATGT 59.103 42.857 0.00 0.00 40.63 3.21
5235 6081 2.244510 ACAATGGAATGCATGTAGGGGA 59.755 45.455 0.00 0.00 0.00 4.81
5243 6130 5.013183 GGAATGCATGTAGGGGATAGTTACT 59.987 44.000 0.00 0.00 0.00 2.24
5273 6160 3.862845 CGTTGGGTGAAAACAAAAGGAAG 59.137 43.478 0.00 0.00 0.00 3.46
5288 6175 1.074405 AGGAAGCACAAGGATCAGCAA 59.926 47.619 0.00 0.00 0.00 3.91
5341 6228 2.938354 CCTTCTCCAGGCACAACAG 58.062 57.895 0.00 0.00 35.13 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.119245 AGTGCCATCATTCATGAGCAAAC 60.119 43.478 6.63 0.00 39.17 2.93
10 11 3.093814 AGTGCCATCATTCATGAGCAAA 58.906 40.909 6.63 0.00 39.17 3.68
31 32 1.932156 AAAGTGTGAGGGGTGTGCCA 61.932 55.000 0.00 0.00 36.17 4.92
40 41 3.066760 GGGTTGACAAAGAAAGTGTGAGG 59.933 47.826 0.00 0.00 0.00 3.86
157 159 4.287766 ACGCACTAAGGAAGGAGAAAAT 57.712 40.909 0.00 0.00 0.00 1.82
195 197 4.275936 ACTCACATCTTTGACCTTTTTCCG 59.724 41.667 0.00 0.00 0.00 4.30
197 199 8.479313 AAAAACTCACATCTTTGACCTTTTTC 57.521 30.769 0.00 0.00 0.00 2.29
264 266 8.255111 TCTATAGCTCATGGATTCAGAAGAAA 57.745 34.615 0.00 0.00 37.29 2.52
267 269 6.591062 GCTTCTATAGCTCATGGATTCAGAAG 59.409 42.308 14.32 14.32 46.77 2.85
269 271 6.035368 GCTTCTATAGCTCATGGATTCAGA 57.965 41.667 0.00 0.00 46.77 3.27
286 288 7.041030 TGTGTCGAACATTTTATTTGGCTTCTA 60.041 33.333 0.00 0.00 32.36 2.10
306 308 5.861787 TGTCATACACTTGATAACTGTGTCG 59.138 40.000 0.00 0.00 42.91 4.35
374 376 3.181482 GCTTCTCACGATCCTCTCATTCA 60.181 47.826 0.00 0.00 0.00 2.57
384 386 3.762779 CCAAAATTGGCTTCTCACGATC 58.237 45.455 0.00 0.00 42.21 3.69
385 387 3.855689 CCAAAATTGGCTTCTCACGAT 57.144 42.857 0.00 0.00 42.21 3.73
428 430 4.215399 ACAATAATTGGACGTGTGTTCTGG 59.785 41.667 0.00 0.00 34.12 3.86
437 439 7.715249 AGCATGTCTATAACAATAATTGGACGT 59.285 33.333 0.00 0.00 42.37 4.34
464 466 6.606069 ACAGCTATAAGTGGTAGAGATGAGA 58.394 40.000 0.74 0.00 39.32 3.27
546 548 2.241259 TGCGAAATTGCTAAAGTCGC 57.759 45.000 10.64 10.64 45.80 5.19
547 549 3.543494 CCATTGCGAAATTGCTAAAGTCG 59.457 43.478 0.00 0.00 35.36 4.18
549 551 4.782019 TCCATTGCGAAATTGCTAAAGT 57.218 36.364 0.00 0.00 35.36 2.66
553 555 6.989759 TCTATAGTTCCATTGCGAAATTGCTA 59.010 34.615 0.00 0.00 35.36 3.49
563 565 6.769512 TGGGATACTTCTATAGTTCCATTGC 58.230 40.000 0.00 0.00 38.33 3.56
577 579 9.843334 CGTAGACTCTTATTTATGGGATACTTC 57.157 37.037 0.00 0.00 0.00 3.01
599 601 2.660236 GAGGATAAATTACGCCGCGTAG 59.340 50.000 23.56 0.00 43.21 3.51
600 602 2.034432 TGAGGATAAATTACGCCGCGTA 59.966 45.455 21.35 21.35 41.54 4.42
601 603 1.202440 TGAGGATAAATTACGCCGCGT 60.202 47.619 23.72 23.72 44.35 6.01
604 606 2.542595 GGTGTGAGGATAAATTACGCCG 59.457 50.000 0.00 0.00 0.00 6.46
624 626 2.160417 GGCGAGTCAAGAAACAATGAGG 59.840 50.000 0.00 0.00 0.00 3.86
629 631 1.942677 TTCGGCGAGTCAAGAAACAA 58.057 45.000 10.46 0.00 0.00 2.83
630 632 1.942677 TTTCGGCGAGTCAAGAAACA 58.057 45.000 10.46 0.00 0.00 2.83
634 636 0.865769 GCTTTTTCGGCGAGTCAAGA 59.134 50.000 21.73 6.06 0.00 3.02
637 639 3.650369 GGCTTTTTCGGCGAGTCA 58.350 55.556 10.46 0.00 0.00 3.41
667 669 2.240160 TGTTCCGGTGGGTTTATATGCT 59.760 45.455 0.00 0.00 33.83 3.79
671 673 5.773680 TCAATTTTGTTCCGGTGGGTTTATA 59.226 36.000 0.00 0.00 33.83 0.98
679 681 2.665519 CGAGCTCAATTTTGTTCCGGTG 60.666 50.000 15.40 0.00 0.00 4.94
684 686 2.287547 TGGTGCGAGCTCAATTTTGTTC 60.288 45.455 15.40 0.00 0.00 3.18
778 808 2.027285 TCTCATCGTGCTCCATTTTCCA 60.027 45.455 0.00 0.00 0.00 3.53
779 809 2.632377 TCTCATCGTGCTCCATTTTCC 58.368 47.619 0.00 0.00 0.00 3.13
782 813 2.012673 GCTTCTCATCGTGCTCCATTT 58.987 47.619 0.00 0.00 0.00 2.32
797 828 1.615392 GAACCTGCCAATTGTGCTTCT 59.385 47.619 16.52 3.18 0.00 2.85
817 848 6.103997 TCGGCTGTTTTAGTAAACTCCATAG 58.896 40.000 0.00 0.00 43.25 2.23
864 898 3.185797 GTGGGTTTAGTACGCTTGACAAG 59.814 47.826 11.02 11.02 40.20 3.16
900 934 4.772886 ATTTATCCGTCCTGTTAAGCCT 57.227 40.909 0.00 0.00 0.00 4.58
914 948 4.082949 GCCCGGCACTTGTATAATTTATCC 60.083 45.833 3.91 0.00 0.00 2.59
1100 1147 2.443016 AGCGGAGAGGAAGCGGAT 60.443 61.111 0.00 0.00 35.78 4.18
1284 1331 0.466124 GGGGAAACGAGAGCAGCTAT 59.534 55.000 0.00 0.00 0.00 2.97
1442 1494 0.106469 AGCGCTCTATGGAGTCTGGA 60.106 55.000 2.64 0.00 41.38 3.86
1444 1496 2.499197 TCTAGCGCTCTATGGAGTCTG 58.501 52.381 16.34 0.00 41.38 3.51
1446 1498 2.415357 GCATCTAGCGCTCTATGGAGTC 60.415 54.545 24.99 10.91 41.38 3.36
1447 1499 1.543802 GCATCTAGCGCTCTATGGAGT 59.456 52.381 24.99 0.18 41.38 3.85
1448 1500 2.276472 GCATCTAGCGCTCTATGGAG 57.724 55.000 24.99 13.61 42.18 3.86
1470 1522 0.890683 CACAGAGGCAAAATCACCCC 59.109 55.000 0.00 0.00 0.00 4.95
1473 1525 3.733443 AAACCACAGAGGCAAAATCAC 57.267 42.857 0.00 0.00 43.14 3.06
1491 1543 2.363306 ACTGCACAGATGGGTCAAAA 57.637 45.000 4.31 0.00 0.00 2.44
1586 1638 9.125026 ACTTTTATCTGAGTTTTTCATGTGACT 57.875 29.630 0.00 0.00 34.68 3.41
1687 1750 1.018148 TCGAGAGTCGAGATGCCTTC 58.982 55.000 0.00 0.00 44.82 3.46
1826 2484 9.869757 ATTTATTAATTACCACAGAAACCAAGC 57.130 29.630 0.00 0.00 0.00 4.01
1842 2500 8.164070 AGTCGCAGGAGGGATAATTTATTAATT 58.836 33.333 0.00 0.00 39.07 1.40
1845 2503 6.681729 AGTCGCAGGAGGGATAATTTATTA 57.318 37.500 0.00 0.00 39.07 0.98
1856 2514 3.111939 CTCGTAGTCGCAGGAGGG 58.888 66.667 0.00 0.00 36.96 4.30
1857 2515 1.658686 AAGCTCGTAGTCGCAGGAGG 61.659 60.000 0.00 0.00 36.96 4.30
1861 2519 0.109272 TGGAAAGCTCGTAGTCGCAG 60.109 55.000 0.00 0.00 36.96 5.18
1862 2520 0.530744 ATGGAAAGCTCGTAGTCGCA 59.469 50.000 0.00 0.00 36.96 5.10
1863 2521 2.033049 TCTATGGAAAGCTCGTAGTCGC 59.967 50.000 0.00 0.00 36.96 5.19
1864 2522 3.965292 TCTATGGAAAGCTCGTAGTCG 57.035 47.619 0.00 0.00 38.55 4.18
1865 2523 6.963049 TTTTTCTATGGAAAGCTCGTAGTC 57.037 37.500 4.33 0.00 41.66 2.59
1866 2524 6.969828 CTTTTTCTATGGAAAGCTCGTAGT 57.030 37.500 4.33 0.00 41.66 2.73
1878 2536 5.464168 CCACAAACTCTGCTTTTTCTATGG 58.536 41.667 0.00 0.00 0.00 2.74
1880 2538 4.524328 CCCCACAAACTCTGCTTTTTCTAT 59.476 41.667 0.00 0.00 0.00 1.98
1892 2550 4.202326 ACCGATATATGTCCCCACAAACTC 60.202 45.833 0.00 0.00 35.64 3.01
1907 2565 8.746052 ATTGATGGTTTCTTTTGACCGATATA 57.254 30.769 0.00 0.00 38.81 0.86
1908 2566 7.645058 ATTGATGGTTTCTTTTGACCGATAT 57.355 32.000 0.00 0.00 38.81 1.63
1913 2571 5.055812 TGCAATTGATGGTTTCTTTTGACC 58.944 37.500 10.34 0.00 36.45 4.02
1935 2593 6.284891 TCCCCTTCTGCATTTTTATCTTTG 57.715 37.500 0.00 0.00 0.00 2.77
1951 2609 1.963515 TCTTTGCTTTGCTTCCCCTTC 59.036 47.619 0.00 0.00 0.00 3.46
2003 2661 6.017440 CCTCACTGTCTAGCTCATACTCTAAC 60.017 46.154 0.00 0.00 0.00 2.34
2038 2696 7.140522 TGGAGGATTGATAGTGATTCATGAA 57.859 36.000 11.26 11.26 0.00 2.57
2069 2727 3.627690 CTGGGAGACAGGGAGAGC 58.372 66.667 0.00 0.00 43.70 4.09
2106 2764 3.380004 AGTTGATTTGTTTGTCGGCAGAA 59.620 39.130 0.00 0.00 0.00 3.02
2152 2810 6.089954 GCCACATCAGTTAAAAGCAGAATTTC 59.910 38.462 0.00 0.00 0.00 2.17
2157 2816 2.819608 GGCCACATCAGTTAAAAGCAGA 59.180 45.455 0.00 0.00 0.00 4.26
2249 2908 5.664457 TCAGTATTGTCTGCGATCTTCATT 58.336 37.500 0.00 0.00 35.63 2.57
2321 2986 1.363807 GCTTGGTTTGGTCCAGCAC 59.636 57.895 0.00 0.00 38.80 4.40
2374 3039 5.765176 TCGGTAATAGTTATGGATGTGACG 58.235 41.667 0.00 0.00 0.00 4.35
2415 3080 0.595095 CCTCTGCAGAAACCACAAGC 59.405 55.000 18.85 0.00 0.00 4.01
2422 3087 3.870419 GACTGATCATCCTCTGCAGAAAC 59.130 47.826 18.85 1.64 0.00 2.78
2481 3147 3.650281 ACCTGTGATGCATGGTATTCA 57.350 42.857 2.46 0.00 30.47 2.57
2503 3169 0.515564 CAAGTTCCAAGTTACGGGCG 59.484 55.000 0.00 0.00 0.00 6.13
2574 3240 0.680618 CAATCTGCAACCAAAGGGCA 59.319 50.000 0.00 0.00 37.90 5.36
2592 3258 2.011947 GCAATCACTACAGCATCAGCA 58.988 47.619 0.00 0.00 45.49 4.41
2780 3447 9.846248 GTGCTCATATAGTGAACAAGAAAATTT 57.154 29.630 0.00 0.00 34.89 1.82
2798 3465 6.321181 GTGGGAAATAAATCAAGGTGCTCATA 59.679 38.462 0.00 0.00 0.00 2.15
2866 3533 8.918202 ATAGAACTAACCACTCATTGACAAAA 57.082 30.769 0.00 0.00 0.00 2.44
2967 3634 9.206870 AGTTGCAGAACCAAATGTATTTATTTG 57.793 29.630 0.00 0.00 44.01 2.32
2981 3650 6.647334 TCATTATTTTGAGTTGCAGAACCA 57.353 33.333 0.00 0.00 31.81 3.67
3039 3708 6.506147 CACAGTGATTTTGTGGAATTCAGAA 58.494 36.000 7.93 0.00 41.66 3.02
3079 3748 6.968131 TCTTCAAAGTAACAATCATCGGAG 57.032 37.500 0.00 0.00 0.00 4.63
3080 3749 6.708502 TGTTCTTCAAAGTAACAATCATCGGA 59.291 34.615 0.00 0.00 30.54 4.55
3207 3876 5.630121 ACAACACCATCCAAGTTCATCTTA 58.370 37.500 0.00 0.00 34.66 2.10
3260 3929 0.324943 GGCTGGCTTCTTAGTGGTCA 59.675 55.000 0.00 0.00 0.00 4.02
3298 3967 2.569404 GGATGAAGTCTTCTGTCACCCT 59.431 50.000 13.67 0.00 0.00 4.34
3356 4025 7.103641 AGAGAAAATAATTGCAAGTCGTAGGA 58.896 34.615 1.02 0.00 0.00 2.94
3544 4213 2.734723 CCGCATATCGACCGCCAG 60.735 66.667 0.00 0.00 41.67 4.85
3552 4221 1.548973 GCAAGTCGGTCCGCATATCG 61.549 60.000 6.34 0.00 38.08 2.92
3789 4458 3.865745 AGAGAAAACAGAATATGACGCGG 59.134 43.478 12.47 0.00 0.00 6.46
3793 4462 7.604164 TCTGGTCAAGAGAAAACAGAATATGAC 59.396 37.037 0.00 0.00 32.09 3.06
3851 4638 0.829990 TCTCAGCCGGCATTATGTCA 59.170 50.000 31.54 6.10 0.00 3.58
4008 4795 2.191641 GATCTGGGTCAGGCCTGC 59.808 66.667 28.91 21.69 37.43 4.85
4129 4919 1.521681 AAACGATCTAGGCGGCAGC 60.522 57.895 13.08 0.00 44.18 5.25
4130 4920 0.460284 ACAAACGATCTAGGCGGCAG 60.460 55.000 13.08 6.93 0.00 4.85
4131 4921 0.036765 AACAAACGATCTAGGCGGCA 60.037 50.000 13.08 0.00 0.00 5.69
4329 5129 1.840737 TGCCTAGAGACAGACCTCAC 58.159 55.000 0.00 0.00 35.68 3.51
4389 5227 9.205513 TGAGCTGATATAGGATGATTATAAGCA 57.794 33.333 5.78 5.78 0.00 3.91
4390 5228 9.474920 GTGAGCTGATATAGGATGATTATAAGC 57.525 37.037 0.00 0.00 0.00 3.09
4391 5229 9.979578 GGTGAGCTGATATAGGATGATTATAAG 57.020 37.037 0.00 0.00 0.00 1.73
4392 5230 9.492730 TGGTGAGCTGATATAGGATGATTATAA 57.507 33.333 0.00 0.00 0.00 0.98
4393 5231 9.140874 CTGGTGAGCTGATATAGGATGATTATA 57.859 37.037 0.00 0.00 0.00 0.98
4394 5232 7.622878 ACTGGTGAGCTGATATAGGATGATTAT 59.377 37.037 0.00 0.00 0.00 1.28
4449 5287 7.614583 ACAGAAATCACATCTTCCATTGAGAAT 59.385 33.333 0.00 0.00 0.00 2.40
4480 5318 8.453320 TCATCAATAGATAAACTTGCACAGTTG 58.547 33.333 12.87 2.52 37.88 3.16
4482 5320 7.607607 TGTCATCAATAGATAAACTTGCACAGT 59.392 33.333 0.00 0.00 32.33 3.55
4495 5334 6.475504 TGACCACAAAGTGTCATCAATAGAT 58.524 36.000 0.00 0.00 33.87 1.98
4502 5342 4.696877 TGATGATGACCACAAAGTGTCATC 59.303 41.667 20.23 20.23 43.15 2.92
4513 5353 2.417933 GCAACAGAGTGATGATGACCAC 59.582 50.000 0.00 0.00 0.00 4.16
4521 5361 4.063689 AGAGAAACTGCAACAGAGTGATG 58.936 43.478 0.78 0.00 35.18 3.07
4568 5411 7.307930 CCATTGAATTGGGTTAGTTTTTCTTGC 60.308 37.037 0.00 0.00 32.80 4.01
4594 5437 1.712977 CGGAGATGAAGGCAGCAAGC 61.713 60.000 0.00 0.00 44.65 4.01
4600 5443 2.202866 GGAGACGGAGATGAAGGCA 58.797 57.895 0.00 0.00 0.00 4.75
4626 5469 4.521062 CCGGCAGGCGAGGAGAAG 62.521 72.222 19.71 0.00 0.00 2.85
4718 5561 4.020218 TGTCATTAAGCTACTGCAAGGTCT 60.020 41.667 0.00 0.00 42.74 3.85
4753 5596 5.626142 TGTTGGATTTAACAGCTCCAAGTA 58.374 37.500 3.59 0.00 46.74 2.24
4774 5617 2.179427 GGCCCCTTTTGCTTATTCTGT 58.821 47.619 0.00 0.00 0.00 3.41
4781 5624 2.924635 GCCAGGCCCCTTTTGCTT 60.925 61.111 0.00 0.00 0.00 3.91
4782 5625 2.970744 AAAGCCAGGCCCCTTTTGCT 62.971 55.000 8.22 0.00 0.00 3.91
4806 5649 1.402968 GATTGCTGGTGCCATGTGTAG 59.597 52.381 0.00 0.00 38.71 2.74
4810 5653 0.251474 ACTGATTGCTGGTGCCATGT 60.251 50.000 0.00 0.00 38.71 3.21
4820 5663 1.884579 CAGCTGTTTCCACTGATTGCT 59.115 47.619 5.25 0.00 33.10 3.91
4825 5668 1.024271 GTTGCAGCTGTTTCCACTGA 58.976 50.000 16.64 0.00 33.10 3.41
4841 5684 3.192466 AGCTTTCTTTTGCTGCAAGTTG 58.808 40.909 15.39 9.60 38.21 3.16
4850 5693 4.023707 TGCTAGAGAACAGCTTTCTTTTGC 60.024 41.667 18.43 18.43 39.83 3.68
4862 5705 2.872245 GTTGTTGTGCTGCTAGAGAACA 59.128 45.455 0.00 0.00 38.64 3.18
4863 5706 3.134458 AGTTGTTGTGCTGCTAGAGAAC 58.866 45.455 0.00 1.84 0.00 3.01
4865 5708 3.133691 CAAGTTGTTGTGCTGCTAGAGA 58.866 45.455 0.00 0.00 0.00 3.10
4866 5709 2.874701 ACAAGTTGTTGTGCTGCTAGAG 59.125 45.455 1.64 0.00 45.58 2.43
4870 5713 1.134946 GGAACAAGTTGTTGTGCTGCT 59.865 47.619 25.46 0.00 46.68 4.24
4871 5714 1.135141 TGGAACAAGTTGTTGTGCTGC 60.135 47.619 25.46 9.82 46.68 5.25
4873 5716 3.951775 TTTGGAACAAGTTGTTGTGCT 57.048 38.095 25.46 0.86 46.68 4.40
4874 5717 4.629200 TGAATTTGGAACAAGTTGTTGTGC 59.371 37.500 25.46 11.23 46.68 4.57
4875 5718 5.636965 TGTGAATTTGGAACAAGTTGTTGTG 59.363 36.000 25.46 0.00 46.68 3.33
4912 5756 1.630369 ACGGGGTTAGGGTTAAACTCC 59.370 52.381 0.00 0.00 43.01 3.85
4916 5760 3.247162 ACTGTACGGGGTTAGGGTTAAA 58.753 45.455 6.65 0.00 0.00 1.52
4954 5798 7.674120 TCACTCAGTTGTAGTAGTAGTCTACA 58.326 38.462 12.54 2.29 46.30 2.74
4955 5799 8.721019 ATCACTCAGTTGTAGTAGTAGTCTAC 57.279 38.462 1.39 1.39 44.79 2.59
4957 5801 9.550406 GATATCACTCAGTTGTAGTAGTAGTCT 57.450 37.037 0.00 0.00 0.00 3.24
4958 5802 9.550406 AGATATCACTCAGTTGTAGTAGTAGTC 57.450 37.037 5.32 0.00 0.00 2.59
4961 5805 9.775854 GGTAGATATCACTCAGTTGTAGTAGTA 57.224 37.037 5.32 0.00 0.00 1.82
4962 5806 8.272889 TGGTAGATATCACTCAGTTGTAGTAGT 58.727 37.037 5.32 0.00 0.00 2.73
4963 5807 8.678593 TGGTAGATATCACTCAGTTGTAGTAG 57.321 38.462 5.32 0.00 0.00 2.57
4964 5808 8.272889 ACTGGTAGATATCACTCAGTTGTAGTA 58.727 37.037 14.82 0.00 32.34 1.82
5066 5911 1.589414 AAGAGCAGCCCCTGTAGAAT 58.411 50.000 0.00 0.00 33.43 2.40
5108 5953 4.025015 CCAAAATTCAGGCTTCATCTCG 57.975 45.455 0.00 0.00 0.00 4.04
5130 5976 2.335712 GGAGAAGCTGCAAACGGGG 61.336 63.158 1.02 0.00 0.00 5.73
5153 5999 1.403687 GCCCGAGGACTAGGAGCAAT 61.404 60.000 0.00 0.00 0.00 3.56
5229 6075 7.025520 ACGAGCTTATAGTAACTATCCCCTA 57.974 40.000 0.00 0.00 0.00 3.53
5235 6081 6.548622 TCACCCAACGAGCTTATAGTAACTAT 59.451 38.462 0.00 0.00 0.00 2.12
5243 6130 4.643463 TGTTTTCACCCAACGAGCTTATA 58.357 39.130 0.00 0.00 0.00 0.98
5273 6160 1.068748 CACAGTTGCTGATCCTTGTGC 60.069 52.381 2.91 0.00 35.18 4.57
5288 6175 4.270008 GGTAATTTCCCTGCATACACAGT 58.730 43.478 0.00 0.00 35.83 3.55
5341 6228 4.156739 CCTTTCCAGGATTACTTGAAGCAC 59.843 45.833 0.00 0.00 44.19 4.40



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.