Multiple sequence alignment - TraesCS5A01G275800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G275800 chr5A 100.000 5263 0 0 2738 8000 485198489 485203751 0.000000e+00 9720.0
1 TraesCS5A01G275800 chr5A 100.000 2400 0 0 1 2400 485195752 485198151 0.000000e+00 4433.0
2 TraesCS5A01G275800 chr5A 89.054 539 31 10 1 513 420154591 420155127 1.880000e-180 643.0
3 TraesCS5A01G275800 chr5A 87.603 121 14 1 7752 7872 585401001 585400882 1.080000e-28 139.0
4 TraesCS5A01G275800 chr5A 94.118 68 3 1 522 588 238846089 238846022 1.420000e-17 102.0
5 TraesCS5A01G275800 chr5A 93.333 45 2 1 6311 6355 126696304 126696261 1.860000e-06 65.8
6 TraesCS5A01G275800 chr5B 94.755 3413 122 23 4382 7742 461134471 461137878 0.000000e+00 5258.0
7 TraesCS5A01G275800 chr5B 96.572 1167 37 3 2752 3917 461132668 461133832 0.000000e+00 1930.0
8 TraesCS5A01G275800 chr5B 90.723 1175 49 17 604 1749 461131532 461132675 0.000000e+00 1511.0
9 TraesCS5A01G275800 chr5B 96.195 473 12 1 3916 4382 461133915 461134387 0.000000e+00 769.0
10 TraesCS5A01G275800 chr5B 85.008 647 51 17 11 613 461047547 461048191 4.100000e-172 616.0
11 TraesCS5A01G275800 chr5B 84.701 268 34 6 1991 2252 593558316 593558582 2.210000e-65 261.0
12 TraesCS5A01G275800 chr5B 83.955 268 36 6 1991 2252 593474318 593474584 4.790000e-62 250.0
13 TraesCS5A01G275800 chr5B 91.129 124 11 0 7754 7877 598525565 598525442 1.380000e-37 169.0
14 TraesCS5A01G275800 chr5B 94.382 89 5 0 2309 2397 593558608 593558696 3.890000e-28 137.0
15 TraesCS5A01G275800 chr5B 87.395 119 15 0 7754 7872 599700045 599700163 3.890000e-28 137.0
16 TraesCS5A01G275800 chr5B 93.478 92 5 1 2309 2399 593474610 593474701 1.400000e-27 135.0
17 TraesCS5A01G275800 chr5D 95.022 1848 49 18 4577 6392 384341258 384343094 0.000000e+00 2863.0
18 TraesCS5A01G275800 chr5D 95.995 1548 48 8 3006 4543 384339714 384341257 0.000000e+00 2503.0
19 TraesCS5A01G275800 chr5D 93.122 1454 61 14 6496 7939 384343087 384344511 0.000000e+00 2095.0
20 TraesCS5A01G275800 chr5D 94.101 1034 29 5 747 1749 384338320 384339352 0.000000e+00 1543.0
21 TraesCS5A01G275800 chr5D 94.961 258 13 0 2752 3009 384339345 384339602 9.670000e-109 405.0
22 TraesCS5A01G275800 chr5D 82.166 157 20 6 7726 7876 558072277 558072123 2.340000e-25 128.0
23 TraesCS5A01G275800 chr7A 96.449 535 8 4 1872 2399 120060110 120059580 0.000000e+00 872.0
24 TraesCS5A01G275800 chr7A 95.896 536 11 4 1872 2400 120090337 120089806 0.000000e+00 857.0
25 TraesCS5A01G275800 chr7A 95.709 536 12 4 1872 2400 120011920 120011389 0.000000e+00 852.0
26 TraesCS5A01G275800 chr7A 89.425 539 29 10 1 513 60357736 60357200 0.000000e+00 654.0
27 TraesCS5A01G275800 chr7A 89.259 540 29 10 1 513 60214291 60213754 0.000000e+00 649.0
28 TraesCS5A01G275800 chr7A 94.545 110 5 1 1768 1876 120060400 120060291 1.380000e-37 169.0
29 TraesCS5A01G275800 chr4B 90.637 534 35 9 3761 4281 527745011 527745542 0.000000e+00 695.0
30 TraesCS5A01G275800 chr4B 90.019 531 36 10 3761 4278 438147177 438146651 0.000000e+00 671.0
31 TraesCS5A01G275800 chr4B 88.147 464 31 7 3222 3677 527744567 527745014 1.530000e-146 531.0
32 TraesCS5A01G275800 chr4B 87.069 464 34 7 3222 3677 438147619 438147174 1.200000e-137 501.0
33 TraesCS5A01G275800 chrUn 89.610 539 28 10 1 513 273334446 273334982 0.000000e+00 660.0
34 TraesCS5A01G275800 chrUn 89.610 539 28 10 1 513 312033918 312033382 0.000000e+00 660.0
35 TraesCS5A01G275800 chrUn 89.425 539 29 10 1 513 312173779 312173243 0.000000e+00 654.0
36 TraesCS5A01G275800 chrUn 89.425 539 29 10 1 513 444295320 444295856 0.000000e+00 654.0
37 TraesCS5A01G275800 chrUn 89.535 516 26 8 24 513 389106329 389106842 5.270000e-176 628.0
38 TraesCS5A01G275800 chr3B 89.610 539 28 10 1 513 5994297 5993761 0.000000e+00 660.0
39 TraesCS5A01G275800 chr2B 89.425 539 29 8 1 513 449183700 449183164 0.000000e+00 654.0
40 TraesCS5A01G275800 chr2B 88.868 539 32 9 1 513 234524645 234524109 8.760000e-179 638.0
41 TraesCS5A01G275800 chr2B 90.083 121 12 0 7755 7875 707608774 707608654 2.990000e-34 158.0
42 TraesCS5A01G275800 chr2B 94.118 68 3 1 522 588 234523996 234524063 1.420000e-17 102.0
43 TraesCS5A01G275800 chr2B 94.118 68 3 1 522 588 357204632 357204699 1.420000e-17 102.0
44 TraesCS5A01G275800 chr2B 95.082 61 2 1 5949 6009 33942235 33942176 2.380000e-15 95.3
45 TraesCS5A01G275800 chr6D 89.219 538 31 9 1 513 108497715 108498250 0.000000e+00 647.0
46 TraesCS5A01G275800 chr6D 89.706 68 7 0 5947 6014 13290794 13290861 3.980000e-13 87.9
47 TraesCS5A01G275800 chr6D 89.362 47 3 2 6309 6355 104982006 104981962 3.120000e-04 58.4
48 TraesCS5A01G275800 chr3A 95.190 395 15 1 2006 2400 642030402 642030792 8.820000e-174 621.0
49 TraesCS5A01G275800 chr3A 96.911 259 5 1 1753 2008 642028054 642028312 1.590000e-116 431.0
50 TraesCS5A01G275800 chr3A 97.561 41 1 0 6315 6355 496990080 496990040 4.010000e-08 71.3
51 TraesCS5A01G275800 chr3A 93.182 44 3 0 6312 6355 491189513 491189470 1.860000e-06 65.8
52 TraesCS5A01G275800 chr3D 88.010 417 34 10 1991 2399 29868867 29868459 5.620000e-131 479.0
53 TraesCS5A01G275800 chr3D 90.306 196 18 1 1751 1946 29869200 29869006 1.030000e-63 255.0
54 TraesCS5A01G275800 chr3D 83.007 153 17 5 7727 7872 588338329 588338479 6.520000e-26 130.0
55 TraesCS5A01G275800 chr3D 92.857 70 3 2 521 588 348267741 348267810 5.110000e-17 100.0
56 TraesCS5A01G275800 chr3D 96.491 57 2 0 5949 6005 45931387 45931331 2.380000e-15 95.3
57 TraesCS5A01G275800 chr3D 91.176 68 5 1 522 588 523769810 523769877 3.070000e-14 91.6
58 TraesCS5A01G275800 chr3D 97.561 41 1 0 6315 6355 374358839 374358799 4.010000e-08 71.3
59 TraesCS5A01G275800 chr2D 87.770 417 36 9 1991 2400 13531253 13530845 2.610000e-129 473.0
60 TraesCS5A01G275800 chr2D 88.030 401 19 9 138 513 200910669 200910273 1.580000e-121 448.0
61 TraesCS5A01G275800 chr2D 91.429 175 15 0 1774 1948 13531564 13531390 2.880000e-59 241.0
62 TraesCS5A01G275800 chr2D 95.385 65 3 0 5949 6013 425742598 425742662 3.950000e-18 104.0
63 TraesCS5A01G275800 chr2D 96.429 56 2 0 5949 6004 35800042 35800097 8.550000e-15 93.5
64 TraesCS5A01G275800 chr7D 89.394 198 21 0 1751 1948 628445593 628445790 4.790000e-62 250.0
65 TraesCS5A01G275800 chr6A 88.525 122 12 2 7752 7872 107324286 107324406 6.470000e-31 147.0
66 TraesCS5A01G275800 chr6A 89.189 74 6 2 517 588 413564154 413564227 3.070000e-14 91.6
67 TraesCS5A01G275800 chr1A 88.235 119 13 1 7754 7872 529595580 529595697 3.010000e-29 141.0
68 TraesCS5A01G275800 chr1A 97.674 43 1 0 6312 6354 567970012 567969970 3.100000e-09 75.0
69 TraesCS5A01G275800 chr1A 92.857 42 3 0 6315 6356 494443771 494443730 2.410000e-05 62.1
70 TraesCS5A01G275800 chr6B 92.647 68 4 1 522 588 625582243 625582310 6.610000e-16 97.1
71 TraesCS5A01G275800 chr6B 91.176 68 5 1 522 588 311376046 311375979 3.070000e-14 91.6
72 TraesCS5A01G275800 chr1D 96.491 57 2 0 5949 6005 22976563 22976619 2.380000e-15 95.3
73 TraesCS5A01G275800 chr7B 98.113 53 1 0 5951 6003 450642168 450642116 8.550000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G275800 chr5A 485195752 485203751 7999 False 7076.5 9720 100.00000 1 8000 2 chr5A.!!$F2 7999
1 TraesCS5A01G275800 chr5A 420154591 420155127 536 False 643.0 643 89.05400 1 513 1 chr5A.!!$F1 512
2 TraesCS5A01G275800 chr5B 461131532 461137878 6346 False 2367.0 5258 94.56125 604 7742 4 chr5B.!!$F3 7138
3 TraesCS5A01G275800 chr5B 461047547 461048191 644 False 616.0 616 85.00800 11 613 1 chr5B.!!$F1 602
4 TraesCS5A01G275800 chr5D 384338320 384344511 6191 False 1881.8 2863 94.64020 747 7939 5 chr5D.!!$F1 7192
5 TraesCS5A01G275800 chr7A 120089806 120090337 531 True 857.0 857 95.89600 1872 2400 1 chr7A.!!$R4 528
6 TraesCS5A01G275800 chr7A 120011389 120011920 531 True 852.0 852 95.70900 1872 2400 1 chr7A.!!$R3 528
7 TraesCS5A01G275800 chr7A 60357200 60357736 536 True 654.0 654 89.42500 1 513 1 chr7A.!!$R2 512
8 TraesCS5A01G275800 chr7A 60213754 60214291 537 True 649.0 649 89.25900 1 513 1 chr7A.!!$R1 512
9 TraesCS5A01G275800 chr7A 120059580 120060400 820 True 520.5 872 95.49700 1768 2399 2 chr7A.!!$R5 631
10 TraesCS5A01G275800 chr4B 527744567 527745542 975 False 613.0 695 89.39200 3222 4281 2 chr4B.!!$F1 1059
11 TraesCS5A01G275800 chr4B 438146651 438147619 968 True 586.0 671 88.54400 3222 4278 2 chr4B.!!$R1 1056
12 TraesCS5A01G275800 chrUn 273334446 273334982 536 False 660.0 660 89.61000 1 513 1 chrUn.!!$F1 512
13 TraesCS5A01G275800 chrUn 312033382 312033918 536 True 660.0 660 89.61000 1 513 1 chrUn.!!$R1 512
14 TraesCS5A01G275800 chrUn 312173243 312173779 536 True 654.0 654 89.42500 1 513 1 chrUn.!!$R2 512
15 TraesCS5A01G275800 chrUn 444295320 444295856 536 False 654.0 654 89.42500 1 513 1 chrUn.!!$F3 512
16 TraesCS5A01G275800 chrUn 389106329 389106842 513 False 628.0 628 89.53500 24 513 1 chrUn.!!$F2 489
17 TraesCS5A01G275800 chr3B 5993761 5994297 536 True 660.0 660 89.61000 1 513 1 chr3B.!!$R1 512
18 TraesCS5A01G275800 chr2B 449183164 449183700 536 True 654.0 654 89.42500 1 513 1 chr2B.!!$R3 512
19 TraesCS5A01G275800 chr2B 234524109 234524645 536 True 638.0 638 88.86800 1 513 1 chr2B.!!$R2 512
20 TraesCS5A01G275800 chr6D 108497715 108498250 535 False 647.0 647 89.21900 1 513 1 chr6D.!!$F2 512
21 TraesCS5A01G275800 chr3A 642028054 642030792 2738 False 526.0 621 96.05050 1753 2400 2 chr3A.!!$F1 647
22 TraesCS5A01G275800 chr3D 29868459 29869200 741 True 367.0 479 89.15800 1751 2399 2 chr3D.!!$R3 648
23 TraesCS5A01G275800 chr2D 13530845 13531564 719 True 357.0 473 89.59950 1774 2400 2 chr2D.!!$R2 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 634 0.028902 GAGTGTTGGTTTGTCACGCC 59.971 55.000 0.00 0.00 37.20 5.68 F
590 640 0.107643 TGGTTTGTCACGCCAGATCA 59.892 50.000 0.00 0.00 0.00 2.92 F
1430 1500 1.003233 GGCCGCTGAATAGGGATCC 60.003 63.158 1.92 1.92 39.07 3.36 F
2319 4942 1.062148 GAAGAAAACATACGAGGGCGC 59.938 52.381 0.00 0.00 42.48 6.53 F
2842 5472 1.349026 ACAGTGCAGCTATTGTCACCT 59.651 47.619 0.00 0.00 35.66 4.00 F
3876 6644 0.321564 TGTCCTGCATGACTTTCGGG 60.322 55.000 20.71 0.15 36.21 5.14 F
4352 7216 1.160137 CAGCTCAGCCTGGTGTAAAC 58.840 55.000 0.00 0.00 0.00 2.01 F
5513 8486 1.625818 ACCCTGAAGCCTTACACTGAG 59.374 52.381 0.00 0.00 0.00 3.35 F
6162 9164 0.674895 CCACTTGCCCTGCTGTAGTC 60.675 60.000 0.00 0.00 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 1653 0.038890 TGGTTCCATGGCGAATTCCA 59.961 50.0 6.96 6.12 40.97 3.53 R
1674 1763 0.409092 ACCAAAGACATGCCCATGGA 59.591 50.0 15.22 0.00 42.91 3.41 R
2842 5472 0.603439 TGCAATGCTCGACTCTGCAA 60.603 50.0 6.82 0.00 42.74 4.08 R
3866 6628 2.554344 CCCTTGATTTCCCCGAAAGTCA 60.554 50.0 0.00 0.00 34.92 3.41 R
4485 7433 0.246360 TGACAGGCATCGTCGTCATT 59.754 50.0 0.00 0.00 36.11 2.57 R
5513 8486 0.179034 CATACTCCTGGCCTGCCTTC 60.179 60.0 9.97 0.00 36.94 3.46 R
6031 9033 0.547954 GGAGGAACAAGAGGGAGGGT 60.548 60.0 0.00 0.00 0.00 4.34 R
6627 9635 0.112218 CCACACCAACTCCCCATTCA 59.888 55.0 0.00 0.00 0.00 2.57 R
7742 10762 0.388659 GTGTGCATCACAAAGGCCAA 59.611 50.0 5.01 0.00 46.28 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 6.374333 CCGTTCAATGAAAAGGGATAAGAAGA 59.626 38.462 9.90 0.00 34.34 2.87
123 124 8.158025 TGAAAAGGGATAAGAAGAATCCACTA 57.842 34.615 4.62 0.00 44.08 2.74
260 263 2.171003 GTGGTCCAATGGCTAAAGCTT 58.829 47.619 0.00 0.00 41.70 3.74
265 268 0.248215 CAATGGCTAAAGCTTCGCCG 60.248 55.000 25.66 13.78 46.67 6.46
281 284 0.037232 GCCGGCTTCTTGTAGACTGT 60.037 55.000 22.15 0.00 0.00 3.55
307 333 1.279025 GGTTAGGCCAGGTGGGATGA 61.279 60.000 5.01 0.00 40.01 2.92
333 362 1.028905 TTTTTCCGCCACAAGTGAGG 58.971 50.000 0.94 5.19 0.00 3.86
380 411 3.369997 GGGGAAGGAAGATCTTCACTCAC 60.370 52.174 31.29 26.02 44.33 3.51
397 428 5.633601 TCACTCACTCATTAAGTAAAGTGCG 59.366 40.000 11.91 0.00 43.77 5.34
412 443 4.980805 GCGTGCGGTGAGACCCAA 62.981 66.667 0.00 0.00 33.75 4.12
427 458 1.342175 ACCCAAAACAAACGAAGGGGA 60.342 47.619 0.00 0.00 40.64 4.81
470 501 6.350445 GGGAACAATTGTCTTGAATGCTATGT 60.350 38.462 12.39 0.00 0.00 2.29
479 510 5.357878 GTCTTGAATGCTATGTTGGGATCAA 59.642 40.000 0.00 0.00 0.00 2.57
526 576 2.086869 CGGGCAGTCAAGATGTGAATT 58.913 47.619 0.00 0.00 38.23 2.17
538 588 8.534333 TCAAGATGTGAATTGACAGTAGTTAC 57.466 34.615 3.63 0.00 31.51 2.50
539 589 8.147704 TCAAGATGTGAATTGACAGTAGTTACA 58.852 33.333 3.63 0.00 31.51 2.41
540 590 8.773645 CAAGATGTGAATTGACAGTAGTTACAA 58.226 33.333 3.63 0.00 0.00 2.41
541 591 8.902540 AGATGTGAATTGACAGTAGTTACAAA 57.097 30.769 3.63 0.00 0.00 2.83
542 592 9.337396 AGATGTGAATTGACAGTAGTTACAAAA 57.663 29.630 3.63 0.00 0.00 2.44
543 593 9.599322 GATGTGAATTGACAGTAGTTACAAAAG 57.401 33.333 3.63 0.00 0.00 2.27
544 594 7.925993 TGTGAATTGACAGTAGTTACAAAAGG 58.074 34.615 0.00 0.00 0.00 3.11
545 595 7.012894 TGTGAATTGACAGTAGTTACAAAAGGG 59.987 37.037 0.00 0.00 0.00 3.95
546 596 6.488683 TGAATTGACAGTAGTTACAAAAGGGG 59.511 38.462 0.00 0.00 0.00 4.79
547 597 5.633655 TTGACAGTAGTTACAAAAGGGGA 57.366 39.130 0.00 0.00 0.00 4.81
548 598 5.633655 TGACAGTAGTTACAAAAGGGGAA 57.366 39.130 0.00 0.00 0.00 3.97
549 599 6.003859 TGACAGTAGTTACAAAAGGGGAAA 57.996 37.500 0.00 0.00 0.00 3.13
550 600 6.607019 TGACAGTAGTTACAAAAGGGGAAAT 58.393 36.000 0.00 0.00 0.00 2.17
551 601 7.747690 TGACAGTAGTTACAAAAGGGGAAATA 58.252 34.615 0.00 0.00 0.00 1.40
552 602 7.881232 TGACAGTAGTTACAAAAGGGGAAATAG 59.119 37.037 0.00 0.00 0.00 1.73
553 603 6.657966 ACAGTAGTTACAAAAGGGGAAATAGC 59.342 38.462 0.00 0.00 0.00 2.97
554 604 6.884836 CAGTAGTTACAAAAGGGGAAATAGCT 59.115 38.462 0.00 0.00 0.00 3.32
555 605 7.065923 CAGTAGTTACAAAAGGGGAAATAGCTC 59.934 40.741 0.00 0.00 0.00 4.09
556 606 5.887754 AGTTACAAAAGGGGAAATAGCTCA 58.112 37.500 0.00 0.00 0.00 4.26
557 607 5.946377 AGTTACAAAAGGGGAAATAGCTCAG 59.054 40.000 0.00 0.00 0.00 3.35
558 608 4.388577 ACAAAAGGGGAAATAGCTCAGT 57.611 40.909 0.00 0.00 0.00 3.41
559 609 4.740902 ACAAAAGGGGAAATAGCTCAGTT 58.259 39.130 0.00 0.00 0.00 3.16
560 610 4.524328 ACAAAAGGGGAAATAGCTCAGTTG 59.476 41.667 0.00 0.00 0.00 3.16
561 611 3.372440 AAGGGGAAATAGCTCAGTTGG 57.628 47.619 0.00 0.00 0.00 3.77
562 612 2.279173 AGGGGAAATAGCTCAGTTGGT 58.721 47.619 0.00 0.00 0.00 3.67
563 613 2.649816 AGGGGAAATAGCTCAGTTGGTT 59.350 45.455 0.00 0.00 0.00 3.67
564 614 3.850173 AGGGGAAATAGCTCAGTTGGTTA 59.150 43.478 0.00 0.00 0.00 2.85
565 615 4.080299 AGGGGAAATAGCTCAGTTGGTTAG 60.080 45.833 0.00 0.00 0.00 2.34
566 616 4.080526 GGGGAAATAGCTCAGTTGGTTAGA 60.081 45.833 0.00 0.00 0.00 2.10
567 617 5.119694 GGGAAATAGCTCAGTTGGTTAGAG 58.880 45.833 0.00 0.00 0.00 2.43
568 618 5.338463 GGGAAATAGCTCAGTTGGTTAGAGT 60.338 44.000 0.00 0.00 0.00 3.24
569 619 5.582665 GGAAATAGCTCAGTTGGTTAGAGTG 59.417 44.000 0.00 0.00 0.00 3.51
570 620 5.746990 AATAGCTCAGTTGGTTAGAGTGT 57.253 39.130 0.00 0.00 0.00 3.55
571 621 5.746990 ATAGCTCAGTTGGTTAGAGTGTT 57.253 39.130 0.00 0.00 0.00 3.32
572 622 3.733337 AGCTCAGTTGGTTAGAGTGTTG 58.267 45.455 0.00 0.00 0.00 3.33
573 623 2.808543 GCTCAGTTGGTTAGAGTGTTGG 59.191 50.000 0.00 0.00 0.00 3.77
574 624 3.744530 GCTCAGTTGGTTAGAGTGTTGGT 60.745 47.826 0.00 0.00 0.00 3.67
575 625 4.451900 CTCAGTTGGTTAGAGTGTTGGTT 58.548 43.478 0.00 0.00 0.00 3.67
576 626 4.850680 TCAGTTGGTTAGAGTGTTGGTTT 58.149 39.130 0.00 0.00 0.00 3.27
577 627 4.638421 TCAGTTGGTTAGAGTGTTGGTTTG 59.362 41.667 0.00 0.00 0.00 2.93
578 628 4.398044 CAGTTGGTTAGAGTGTTGGTTTGT 59.602 41.667 0.00 0.00 0.00 2.83
579 629 4.638865 AGTTGGTTAGAGTGTTGGTTTGTC 59.361 41.667 0.00 0.00 0.00 3.18
580 630 4.223556 TGGTTAGAGTGTTGGTTTGTCA 57.776 40.909 0.00 0.00 0.00 3.58
581 631 3.942748 TGGTTAGAGTGTTGGTTTGTCAC 59.057 43.478 0.00 0.00 0.00 3.67
582 632 3.001939 GGTTAGAGTGTTGGTTTGTCACG 59.998 47.826 0.00 0.00 37.20 4.35
583 633 1.014352 AGAGTGTTGGTTTGTCACGC 58.986 50.000 0.00 0.00 37.20 5.34
584 634 0.028902 GAGTGTTGGTTTGTCACGCC 59.971 55.000 0.00 0.00 37.20 5.68
585 635 0.678366 AGTGTTGGTTTGTCACGCCA 60.678 50.000 0.00 0.00 37.20 5.69
586 636 0.248458 GTGTTGGTTTGTCACGCCAG 60.248 55.000 0.00 0.00 33.41 4.85
587 637 0.393132 TGTTGGTTTGTCACGCCAGA 60.393 50.000 0.00 0.00 33.41 3.86
588 638 0.951558 GTTGGTTTGTCACGCCAGAT 59.048 50.000 0.00 0.00 33.41 2.90
589 639 1.069227 GTTGGTTTGTCACGCCAGATC 60.069 52.381 0.00 0.00 33.41 2.75
590 640 0.107643 TGGTTTGTCACGCCAGATCA 59.892 50.000 0.00 0.00 0.00 2.92
591 641 1.271325 TGGTTTGTCACGCCAGATCAT 60.271 47.619 0.00 0.00 0.00 2.45
592 642 2.027653 TGGTTTGTCACGCCAGATCATA 60.028 45.455 0.00 0.00 0.00 2.15
593 643 3.206150 GGTTTGTCACGCCAGATCATAT 58.794 45.455 0.00 0.00 0.00 1.78
594 644 4.141824 TGGTTTGTCACGCCAGATCATATA 60.142 41.667 0.00 0.00 0.00 0.86
595 645 4.449068 GGTTTGTCACGCCAGATCATATAG 59.551 45.833 0.00 0.00 0.00 1.31
596 646 3.303881 TGTCACGCCAGATCATATAGC 57.696 47.619 0.00 0.00 0.00 2.97
597 647 2.627699 TGTCACGCCAGATCATATAGCA 59.372 45.455 0.00 0.00 0.00 3.49
598 648 3.069443 TGTCACGCCAGATCATATAGCAA 59.931 43.478 0.00 0.00 0.00 3.91
599 649 3.677121 GTCACGCCAGATCATATAGCAAG 59.323 47.826 0.00 0.00 0.00 4.01
600 650 2.414481 CACGCCAGATCATATAGCAAGC 59.586 50.000 0.00 0.00 0.00 4.01
601 651 2.301296 ACGCCAGATCATATAGCAAGCT 59.699 45.455 0.00 0.00 0.00 3.74
602 652 3.244353 ACGCCAGATCATATAGCAAGCTT 60.244 43.478 0.00 0.00 0.00 3.74
603 653 3.750130 CGCCAGATCATATAGCAAGCTTT 59.250 43.478 0.00 0.00 0.00 3.51
604 654 4.931601 CGCCAGATCATATAGCAAGCTTTA 59.068 41.667 0.00 0.00 0.00 1.85
605 655 5.583854 CGCCAGATCATATAGCAAGCTTTAT 59.416 40.000 0.00 0.00 0.00 1.40
606 656 6.456584 CGCCAGATCATATAGCAAGCTTTATG 60.457 42.308 19.83 19.83 38.46 1.90
607 657 6.373774 GCCAGATCATATAGCAAGCTTTATGT 59.626 38.462 22.82 14.79 38.35 2.29
608 658 7.550551 GCCAGATCATATAGCAAGCTTTATGTA 59.449 37.037 22.82 14.61 38.35 2.29
609 659 9.440773 CCAGATCATATAGCAAGCTTTATGTAA 57.559 33.333 22.82 11.78 38.35 2.41
642 692 1.005156 GCTCCAGATCCGATGCCTC 60.005 63.158 0.00 0.00 0.00 4.70
643 693 1.470996 GCTCCAGATCCGATGCCTCT 61.471 60.000 0.00 0.00 0.00 3.69
646 696 2.630098 CTCCAGATCCGATGCCTCTTTA 59.370 50.000 0.00 0.00 0.00 1.85
670 720 4.580167 CACCTTTGTTCAATCCTCAACAGA 59.420 41.667 0.00 0.00 34.07 3.41
681 731 3.955471 TCCTCAACAGAAGGCCAATAAG 58.045 45.455 5.01 0.00 33.65 1.73
690 741 7.124573 ACAGAAGGCCAATAAGAAAAACTTT 57.875 32.000 5.01 0.00 39.72 2.66
691 742 8.245195 ACAGAAGGCCAATAAGAAAAACTTTA 57.755 30.769 5.01 0.00 39.72 1.85
694 745 9.764363 AGAAGGCCAATAAGAAAAACTTTAAAG 57.236 29.630 13.76 13.76 39.72 1.85
696 747 7.450074 AGGCCAATAAGAAAAACTTTAAAGGG 58.550 34.615 19.14 7.17 39.72 3.95
699 750 8.364894 GCCAATAAGAAAAACTTTAAAGGGAGA 58.635 33.333 19.14 0.00 39.72 3.71
712 763 8.332487 ACTTTAAAGGGAGAAGATGCTCTAATT 58.668 33.333 19.14 0.00 35.26 1.40
713 764 9.183368 CTTTAAAGGGAGAAGATGCTCTAATTT 57.817 33.333 7.37 0.00 35.26 1.82
714 765 9.533831 TTTAAAGGGAGAAGATGCTCTAATTTT 57.466 29.630 0.00 0.00 35.26 1.82
715 766 7.401955 AAAGGGAGAAGATGCTCTAATTTTG 57.598 36.000 0.00 0.00 35.26 2.44
716 767 6.072199 AGGGAGAAGATGCTCTAATTTTGT 57.928 37.500 0.00 0.00 35.26 2.83
717 768 7.200434 AGGGAGAAGATGCTCTAATTTTGTA 57.800 36.000 0.00 0.00 35.26 2.41
718 769 7.633789 AGGGAGAAGATGCTCTAATTTTGTAA 58.366 34.615 0.00 0.00 35.26 2.41
735 786 4.425180 TGTAAGCACCTTCCTAAACACA 57.575 40.909 0.00 0.00 0.00 3.72
736 787 4.980573 TGTAAGCACCTTCCTAAACACAT 58.019 39.130 0.00 0.00 0.00 3.21
760 811 4.799564 TGCATTTTACAAGCCCTAAAGG 57.200 40.909 0.00 0.00 39.47 3.11
802 853 1.212935 GGGCAGTGATACAACCCAGAT 59.787 52.381 0.00 0.00 36.03 2.90
1228 1298 1.433879 CTCCGCTCGATTCGGTTCT 59.566 57.895 20.85 0.00 46.49 3.01
1262 1332 2.091610 TGTGGTTGGTTGGGATTTCTGA 60.092 45.455 0.00 0.00 0.00 3.27
1309 1379 2.024983 TTGCTAGGGTTTTGGGGGCA 62.025 55.000 0.00 0.00 0.00 5.36
1430 1500 1.003233 GGCCGCTGAATAGGGATCC 60.003 63.158 1.92 1.92 39.07 3.36
1448 1518 1.898472 TCCATAGATGCAGGCTAGAGC 59.102 52.381 0.00 0.00 41.14 4.09
1513 1602 2.237392 GTTGTTGCTCCTCCAGTCCTAT 59.763 50.000 0.00 0.00 0.00 2.57
1547 1636 2.099921 TCGCTGAATAGAGAGCCAGTTC 59.900 50.000 0.00 0.00 30.98 3.01
1564 1653 5.491982 CCAGTTCTGCCATTTAGTCTAACT 58.508 41.667 0.00 0.00 0.00 2.24
1658 1747 3.818773 AGAACACAATTACTCCGGTTTGG 59.181 43.478 0.00 0.00 40.09 3.28
1674 1763 3.288092 GTTTGGTTCAGTTGGAGGTTCT 58.712 45.455 0.00 0.00 0.00 3.01
1804 1896 2.937519 CCTTGGATCTTAAGCCCCTTC 58.062 52.381 12.26 0.00 0.00 3.46
1855 1947 3.311596 AGTTCGGTCTTGTTGTTGCTAAC 59.688 43.478 0.00 0.00 0.00 2.34
2319 4942 1.062148 GAAGAAAACATACGAGGGCGC 59.938 52.381 0.00 0.00 42.48 6.53
2842 5472 1.349026 ACAGTGCAGCTATTGTCACCT 59.651 47.619 0.00 0.00 35.66 4.00
3243 5988 4.825422 TCAAGAAGGACATAGAAGCACAG 58.175 43.478 0.00 0.00 0.00 3.66
3378 6123 9.787532 GTGCTAATGTGCATCTTTATTTTTCTA 57.212 29.630 0.00 0.00 45.23 2.10
3407 6152 5.140454 AGGTAACAATTCTTGGACAAGCTT 58.860 37.500 7.18 0.00 37.42 3.74
3411 6156 6.463995 AACAATTCTTGGACAAGCTTGTAA 57.536 33.333 31.20 21.18 42.43 2.41
3416 6161 3.255642 TCTTGGACAAGCTTGTAATTGCC 59.744 43.478 31.20 25.70 42.43 4.52
3443 6188 4.518970 TCCTTTGATAAACTCTTGTGGTGC 59.481 41.667 0.00 0.00 0.00 5.01
3526 6275 7.929785 GGTATGGTTAAAAAGGAGATCGATACA 59.070 37.037 0.00 0.00 0.00 2.29
3531 6280 8.674607 GGTTAAAAAGGAGATCGATACATTGTT 58.325 33.333 0.00 4.20 0.00 2.83
3866 6628 2.038689 CTCATATCCTGCTGTCCTGCAT 59.961 50.000 0.00 0.00 42.48 3.96
3876 6644 0.321564 TGTCCTGCATGACTTTCGGG 60.322 55.000 20.71 0.15 36.21 5.14
3878 6646 1.198094 TCCTGCATGACTTTCGGGGA 61.198 55.000 0.00 0.00 0.00 4.81
4075 6939 7.436673 GTGGTACATTTTTGTTATGCAGTTTCA 59.563 33.333 0.00 0.00 44.52 2.69
4206 7070 4.872124 TCTATTGTTGTAGCTGCTGTCATG 59.128 41.667 13.43 0.00 0.00 3.07
4246 7110 6.665680 AGGTAACATGACAGATTCTAGACTGT 59.334 38.462 14.15 14.15 44.50 3.55
4270 7134 3.456380 AGCCTTTTCCTATTTGCTCCA 57.544 42.857 0.00 0.00 0.00 3.86
4308 7172 9.086336 CAGTATGTCAGTGTTGTTTTCAAAAAT 57.914 29.630 0.00 0.00 41.76 1.82
4352 7216 1.160137 CAGCTCAGCCTGGTGTAAAC 58.840 55.000 0.00 0.00 0.00 2.01
4474 7422 5.308825 ACTTGTACATTGAGAACTTCCTGG 58.691 41.667 0.00 0.00 0.00 4.45
4535 7491 5.715439 ATCCATCCTTCCACTTTACATGA 57.285 39.130 0.00 0.00 0.00 3.07
4567 7523 7.554118 ACCTCATCTAACAAGTGATTATTGTGG 59.446 37.037 0.00 0.00 39.91 4.17
4681 7637 5.402997 AGTGGAGTAGTTAACCTAAGCAC 57.597 43.478 0.88 0.00 0.00 4.40
4859 7822 4.644103 AATATGCCAAGCTGAACACATC 57.356 40.909 0.00 0.00 0.00 3.06
4998 7961 4.569653 CCTGGGATTGTGGGTCAGAAAATA 60.570 45.833 0.00 0.00 0.00 1.40
4999 7962 4.599041 TGGGATTGTGGGTCAGAAAATAG 58.401 43.478 0.00 0.00 0.00 1.73
5000 7963 3.381590 GGGATTGTGGGTCAGAAAATAGC 59.618 47.826 0.00 0.00 0.00 2.97
5001 7964 4.016444 GGATTGTGGGTCAGAAAATAGCA 58.984 43.478 0.00 0.00 0.00 3.49
5002 7965 4.646492 GGATTGTGGGTCAGAAAATAGCAT 59.354 41.667 0.00 0.00 0.00 3.79
5120 8090 6.808829 TGATGTTTCTGAGTTTTTGCATCTT 58.191 32.000 0.00 0.00 34.38 2.40
5127 8099 9.985730 TTTCTGAGTTTTTGCATCTTTATTCAT 57.014 25.926 0.00 0.00 0.00 2.57
5129 8101 9.630098 TCTGAGTTTTTGCATCTTTATTCATTC 57.370 29.630 0.00 0.00 0.00 2.67
5195 8168 7.093771 CCTGTCATTAAAGAAAATTGGGCTACT 60.094 37.037 0.00 0.00 0.00 2.57
5202 8175 3.259123 AGAAAATTGGGCTACTGCAAAGG 59.741 43.478 0.00 0.00 41.91 3.11
5206 8179 2.603075 TGGGCTACTGCAAAGGAAAT 57.397 45.000 0.00 0.00 41.91 2.17
5354 8327 8.180267 CACTAGATCCTCTTTGTTTAGCAATTG 58.820 37.037 0.00 0.00 36.89 2.32
5384 8357 5.188948 AGGCCATAGTGTTGTCATTGTAGTA 59.811 40.000 5.01 0.00 0.00 1.82
5513 8486 1.625818 ACCCTGAAGCCTTACACTGAG 59.374 52.381 0.00 0.00 0.00 3.35
5528 8501 2.254737 CTGAGAAGGCAGGCCAGGAG 62.255 65.000 13.63 0.00 38.92 3.69
5546 8519 2.029365 GGAGTATGAAAAGCTTCGCGAC 59.971 50.000 9.15 0.00 33.94 5.19
5621 8594 5.946942 TCTCAAGTATTCCAGCTTCTCAT 57.053 39.130 0.00 0.00 0.00 2.90
5719 8692 7.500141 AGTTATTGAACACTTGGCTGAATTTT 58.500 30.769 0.00 0.00 38.10 1.82
5720 8693 8.637986 AGTTATTGAACACTTGGCTGAATTTTA 58.362 29.630 0.00 0.00 38.10 1.52
5721 8694 9.423061 GTTATTGAACACTTGGCTGAATTTTAT 57.577 29.630 0.00 0.00 35.48 1.40
5722 8695 9.995003 TTATTGAACACTTGGCTGAATTTTATT 57.005 25.926 0.00 0.00 0.00 1.40
5724 8697 6.815089 TGAACACTTGGCTGAATTTTATTGT 58.185 32.000 0.00 0.00 0.00 2.71
5779 8771 3.505464 ATCTGCATTTTTCTCTGCTGC 57.495 42.857 0.00 0.00 39.16 5.25
5832 8824 7.517320 TGCAGCCCTCTAATAGAATTATTTCA 58.483 34.615 0.00 0.00 34.08 2.69
6006 9008 8.783660 ATATTTTGATACAGAGGGAGTACTGA 57.216 34.615 0.00 0.00 37.54 3.41
6031 9033 6.443849 ACCTACCAGAATTTCTTGGAGATACA 59.556 38.462 10.59 0.00 0.00 2.29
6110 9112 3.754965 TGCCATCAAAACTGAAGCTAGT 58.245 40.909 0.00 0.00 0.00 2.57
6161 9163 1.376466 CCACTTGCCCTGCTGTAGT 59.624 57.895 0.00 0.00 0.00 2.73
6162 9164 0.674895 CCACTTGCCCTGCTGTAGTC 60.675 60.000 0.00 0.00 0.00 2.59
6165 9168 2.786539 CTTGCCCTGCTGTAGTCGCA 62.787 60.000 1.59 1.59 35.80 5.10
6392 9398 6.334202 ACTACTACTGCTGAATTGCTCTAAC 58.666 40.000 0.00 0.00 0.00 2.34
6426 9432 3.510753 TGTGTATACGCTAGTGGGTGAAA 59.489 43.478 16.94 0.00 39.74 2.69
6434 9440 2.565841 CTAGTGGGTGAAATAGGCTGC 58.434 52.381 0.00 0.00 0.00 5.25
6480 9486 3.905784 ACCTTCGTACTTACCTTGAACG 58.094 45.455 0.00 0.00 34.99 3.95
6497 9503 5.425577 TGAACGATACTACATCTCTCTGC 57.574 43.478 0.00 0.00 0.00 4.26
6498 9504 5.126779 TGAACGATACTACATCTCTCTGCT 58.873 41.667 0.00 0.00 0.00 4.24
6499 9505 6.289064 TGAACGATACTACATCTCTCTGCTA 58.711 40.000 0.00 0.00 0.00 3.49
6501 9507 7.445707 TGAACGATACTACATCTCTCTGCTATT 59.554 37.037 0.00 0.00 0.00 1.73
6540 9548 2.356535 GGCCTGAAGATCCAAGTCATGT 60.357 50.000 0.00 0.00 0.00 3.21
6544 9552 5.454471 GCCTGAAGATCCAAGTCATGTATCT 60.454 44.000 0.00 0.00 0.00 1.98
6754 9762 2.045634 TAGGCTGCTGCTTGGCTG 60.046 61.111 23.76 0.00 39.45 4.85
6773 9781 3.125316 GCTGCTTATGCCCGTATATGTTC 59.875 47.826 0.00 0.00 38.71 3.18
6897 9907 5.181245 TGTTCGATCTGAAACCTTCCATTTC 59.819 40.000 2.31 0.00 38.60 2.17
6967 9977 3.683365 AAGTTTTGGTCAATGGCCATC 57.317 42.857 21.08 6.98 35.71 3.51
6990 10000 3.725459 CACAAGCGCCGACATGCA 61.725 61.111 2.29 0.00 0.00 3.96
7065 10075 6.002082 AGGTACCACATTCTTCCTTTGTTAC 58.998 40.000 15.94 0.00 0.00 2.50
7275 10289 3.814842 TCCATACAACTGTGAAGCAAGTG 59.185 43.478 0.00 0.00 0.00 3.16
7467 10483 2.223711 GCAAACCGTGTCTCCATTTTGT 60.224 45.455 0.00 0.00 0.00 2.83
7483 10499 5.602145 CCATTTTGTCCCCCATGTATTGTAT 59.398 40.000 0.00 0.00 0.00 2.29
7496 10512 1.014352 ATTGTATCGGCCGTTTCTGC 58.986 50.000 27.15 12.38 0.00 4.26
7498 10514 1.808390 GTATCGGCCGTTTCTGCGT 60.808 57.895 27.15 4.81 0.00 5.24
7519 10535 2.829720 TGATCACGTTGCTAAGTAGGGT 59.170 45.455 0.00 0.00 0.00 4.34
7534 10550 8.197439 GCTAAGTAGGGTTTACGAGGTTAAATA 58.803 37.037 0.00 0.00 0.00 1.40
7560 10576 5.581085 GCAGATATTCGTTTTAGTGGACACT 59.419 40.000 10.15 10.15 45.02 3.55
7604 10620 1.265905 CGTTTTGAGTGTACTTGGGGC 59.734 52.381 0.00 0.00 0.00 5.80
7640 10656 4.622701 ACTTCCTAACGTACGTACCATC 57.377 45.455 23.12 0.00 0.00 3.51
7641 10657 3.063997 ACTTCCTAACGTACGTACCATCG 59.936 47.826 23.12 10.69 0.00 3.84
7683 10700 7.117236 TCAGATTAAAACTATTCAACGTCGCTT 59.883 33.333 0.00 0.00 0.00 4.68
7742 10762 7.002201 TTTTCCGGAAAAGGAGGATTACCCT 62.002 44.000 33.30 0.00 41.98 4.34
7752 10772 1.716503 AGGATTACCCTTGGCCTTTGT 59.283 47.619 3.32 0.00 44.85 2.83
7831 10851 6.995091 ACATAGATCAACCTAAAGCCATCTTC 59.005 38.462 0.00 0.00 0.00 2.87
7832 10852 4.786425 AGATCAACCTAAAGCCATCTTCC 58.214 43.478 0.00 0.00 0.00 3.46
7833 10853 4.476479 AGATCAACCTAAAGCCATCTTCCT 59.524 41.667 0.00 0.00 0.00 3.36
7834 10854 3.955471 TCAACCTAAAGCCATCTTCCTG 58.045 45.455 0.00 0.00 0.00 3.86
7835 10855 3.019564 CAACCTAAAGCCATCTTCCTGG 58.980 50.000 0.00 0.00 39.45 4.45
7836 10856 2.279173 ACCTAAAGCCATCTTCCTGGT 58.721 47.619 0.00 0.00 38.63 4.00
7837 10857 2.025887 ACCTAAAGCCATCTTCCTGGTG 60.026 50.000 0.00 0.00 38.63 4.17
7838 10858 2.239654 CCTAAAGCCATCTTCCTGGTGA 59.760 50.000 0.00 0.00 38.63 4.02
7839 10859 2.978156 AAAGCCATCTTCCTGGTGAA 57.022 45.000 0.00 0.00 38.63 3.18
7840 10860 2.978156 AAGCCATCTTCCTGGTGAAA 57.022 45.000 0.00 0.00 38.63 2.69
7841 10861 2.978156 AGCCATCTTCCTGGTGAAAA 57.022 45.000 0.00 0.00 38.63 2.29
7842 10862 3.463048 AGCCATCTTCCTGGTGAAAAT 57.537 42.857 0.00 0.00 38.63 1.82
7843 10863 3.782992 AGCCATCTTCCTGGTGAAAATT 58.217 40.909 0.00 0.00 38.63 1.82
7844 10864 3.512724 AGCCATCTTCCTGGTGAAAATTG 59.487 43.478 0.00 0.00 38.63 2.32
7845 10865 3.259123 GCCATCTTCCTGGTGAAAATTGT 59.741 43.478 0.00 0.00 38.63 2.71
7846 10866 4.262592 GCCATCTTCCTGGTGAAAATTGTT 60.263 41.667 0.00 0.00 38.63 2.83
7847 10867 5.232463 CCATCTTCCTGGTGAAAATTGTTG 58.768 41.667 0.00 0.00 31.06 3.33
7848 10868 4.320608 TCTTCCTGGTGAAAATTGTTGC 57.679 40.909 0.00 0.00 31.06 4.17
7849 10869 3.069443 TCTTCCTGGTGAAAATTGTTGCC 59.931 43.478 0.00 0.00 31.06 4.52
7850 10870 1.691434 TCCTGGTGAAAATTGTTGCCC 59.309 47.619 0.00 0.00 0.00 5.36
7851 10871 1.693606 CCTGGTGAAAATTGTTGCCCT 59.306 47.619 0.00 0.00 0.00 5.19
7852 10872 2.896685 CCTGGTGAAAATTGTTGCCCTA 59.103 45.455 0.00 0.00 0.00 3.53
7853 10873 3.306019 CCTGGTGAAAATTGTTGCCCTAC 60.306 47.826 0.00 0.00 0.00 3.18
7854 10874 2.630580 TGGTGAAAATTGTTGCCCTACC 59.369 45.455 0.00 0.00 0.00 3.18
7855 10875 2.897326 GGTGAAAATTGTTGCCCTACCT 59.103 45.455 0.00 0.00 0.00 3.08
7884 10905 8.461249 AGATTGATGATGTTCCTCTTTATTGG 57.539 34.615 0.00 0.00 0.00 3.16
7900 10921 9.655769 CTCTTTATTGGATTATTCAACATGACG 57.344 33.333 0.00 0.00 0.00 4.35
7939 10960 4.429854 AGATCTACCCAAAGCCATCTTC 57.570 45.455 0.00 0.00 0.00 2.87
7940 10961 3.137360 AGATCTACCCAAAGCCATCTTCC 59.863 47.826 0.00 0.00 0.00 3.46
7941 10962 1.564348 TCTACCCAAAGCCATCTTCCC 59.436 52.381 0.00 0.00 0.00 3.97
7942 10963 1.566231 CTACCCAAAGCCATCTTCCCT 59.434 52.381 0.00 0.00 0.00 4.20
7943 10964 0.786435 ACCCAAAGCCATCTTCCCTT 59.214 50.000 0.00 0.00 0.00 3.95
7944 10965 2.000048 ACCCAAAGCCATCTTCCCTTA 59.000 47.619 0.00 0.00 0.00 2.69
7945 10966 2.291605 ACCCAAAGCCATCTTCCCTTAC 60.292 50.000 0.00 0.00 0.00 2.34
7946 10967 2.379005 CCAAAGCCATCTTCCCTTACC 58.621 52.381 0.00 0.00 0.00 2.85
7947 10968 2.024941 CCAAAGCCATCTTCCCTTACCT 60.025 50.000 0.00 0.00 0.00 3.08
7948 10969 3.202151 CCAAAGCCATCTTCCCTTACCTA 59.798 47.826 0.00 0.00 0.00 3.08
7949 10970 4.200092 CAAAGCCATCTTCCCTTACCTAC 58.800 47.826 0.00 0.00 0.00 3.18
7950 10971 3.130734 AGCCATCTTCCCTTACCTACA 57.869 47.619 0.00 0.00 0.00 2.74
7951 10972 3.460825 AGCCATCTTCCCTTACCTACAA 58.539 45.455 0.00 0.00 0.00 2.41
7952 10973 3.456277 AGCCATCTTCCCTTACCTACAAG 59.544 47.826 0.00 0.00 0.00 3.16
7953 10974 3.454812 GCCATCTTCCCTTACCTACAAGA 59.545 47.826 0.00 0.00 0.00 3.02
7954 10975 4.103311 GCCATCTTCCCTTACCTACAAGAT 59.897 45.833 0.00 0.00 34.75 2.40
7955 10976 5.398012 GCCATCTTCCCTTACCTACAAGATT 60.398 44.000 0.00 0.00 32.59 2.40
7956 10977 6.058183 CCATCTTCCCTTACCTACAAGATTG 58.942 44.000 0.00 0.00 32.59 2.67
7957 10978 6.126768 CCATCTTCCCTTACCTACAAGATTGA 60.127 42.308 0.00 0.00 32.59 2.57
7958 10979 7.420680 CCATCTTCCCTTACCTACAAGATTGAT 60.421 40.741 0.00 0.00 32.59 2.57
7959 10980 8.651389 CATCTTCCCTTACCTACAAGATTGATA 58.349 37.037 0.00 0.00 32.59 2.15
7960 10981 8.798975 TCTTCCCTTACCTACAAGATTGATAT 57.201 34.615 0.00 0.00 0.00 1.63
7961 10982 8.871125 TCTTCCCTTACCTACAAGATTGATATC 58.129 37.037 0.00 0.00 0.00 1.63
7962 10983 8.798975 TTCCCTTACCTACAAGATTGATATCT 57.201 34.615 3.98 0.00 43.01 1.98
7964 10985 9.225682 TCCCTTACCTACAAGATTGATATCTTT 57.774 33.333 3.98 0.00 46.53 2.52
7965 10986 9.495572 CCCTTACCTACAAGATTGATATCTTTC 57.504 37.037 3.98 1.12 46.53 2.62
7966 10987 9.495572 CCTTACCTACAAGATTGATATCTTTCC 57.504 37.037 3.98 0.00 46.53 3.13
7967 10988 9.495572 CTTACCTACAAGATTGATATCTTTCCC 57.504 37.037 3.98 0.00 46.53 3.97
7968 10989 7.698163 ACCTACAAGATTGATATCTTTCCCT 57.302 36.000 3.98 0.00 46.53 4.20
7969 10990 8.798975 ACCTACAAGATTGATATCTTTCCCTA 57.201 34.615 3.98 0.00 46.53 3.53
7970 10991 8.652290 ACCTACAAGATTGATATCTTTCCCTAC 58.348 37.037 3.98 0.00 46.53 3.18
7971 10992 8.097662 CCTACAAGATTGATATCTTTCCCTACC 58.902 40.741 3.98 0.00 46.53 3.18
7972 10993 7.698163 ACAAGATTGATATCTTTCCCTACCT 57.302 36.000 3.98 0.00 46.53 3.08
7973 10994 8.798975 ACAAGATTGATATCTTTCCCTACCTA 57.201 34.615 3.98 0.00 46.53 3.08
7974 10995 8.652290 ACAAGATTGATATCTTTCCCTACCTAC 58.348 37.037 3.98 0.00 46.53 3.18
7975 10996 8.651389 CAAGATTGATATCTTTCCCTACCTACA 58.349 37.037 3.98 0.00 46.53 2.74
7976 10997 8.798975 AGATTGATATCTTTCCCTACCTACAA 57.201 34.615 3.98 0.00 37.90 2.41
7977 10998 8.875168 AGATTGATATCTTTCCCTACCTACAAG 58.125 37.037 3.98 0.00 37.90 3.16
7978 10999 8.798975 ATTGATATCTTTCCCTACCTACAAGA 57.201 34.615 3.98 0.00 0.00 3.02
7979 11000 8.798975 TTGATATCTTTCCCTACCTACAAGAT 57.201 34.615 3.98 0.00 37.79 2.40
7980 11001 8.798975 TGATATCTTTCCCTACCTACAAGATT 57.201 34.615 3.98 0.00 36.03 2.40
7981 11002 8.651389 TGATATCTTTCCCTACCTACAAGATTG 58.349 37.037 3.98 0.00 36.03 2.67
7982 11003 8.798975 ATATCTTTCCCTACCTACAAGATTGA 57.201 34.615 0.00 0.00 36.03 2.57
7983 11004 7.698163 ATCTTTCCCTACCTACAAGATTGAT 57.302 36.000 0.00 0.00 31.46 2.57
7984 11005 6.889198 TCTTTCCCTACCTACAAGATTGATG 58.111 40.000 0.00 0.00 0.00 3.07
7985 11006 6.672218 TCTTTCCCTACCTACAAGATTGATGA 59.328 38.462 0.00 0.00 0.00 2.92
7986 11007 7.348274 TCTTTCCCTACCTACAAGATTGATGAT 59.652 37.037 0.00 0.00 0.00 2.45
7987 11008 6.425210 TCCCTACCTACAAGATTGATGATG 57.575 41.667 0.00 0.00 0.00 3.07
7988 11009 5.905331 TCCCTACCTACAAGATTGATGATGT 59.095 40.000 0.00 0.00 0.00 3.06
7989 11010 5.994054 CCCTACCTACAAGATTGATGATGTG 59.006 44.000 0.00 0.00 0.00 3.21
7990 11011 5.468072 CCTACCTACAAGATTGATGATGTGC 59.532 44.000 0.00 0.00 0.00 4.57
7991 11012 4.847198 ACCTACAAGATTGATGATGTGCA 58.153 39.130 0.00 0.00 0.00 4.57
7992 11013 5.443283 ACCTACAAGATTGATGATGTGCAT 58.557 37.500 0.00 0.00 40.77 3.96
7993 11014 5.298527 ACCTACAAGATTGATGATGTGCATG 59.701 40.000 0.00 0.00 37.34 4.06
7994 11015 4.041740 ACAAGATTGATGATGTGCATGC 57.958 40.909 11.82 11.82 37.34 4.06
7995 11016 3.445805 ACAAGATTGATGATGTGCATGCA 59.554 39.130 18.46 18.46 37.34 3.96
7996 11017 3.710326 AGATTGATGATGTGCATGCAC 57.290 42.857 38.00 38.00 46.33 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.193903 TGATGTCCCGTTTGACGATTCTA 59.806 43.478 1.51 0.00 46.05 2.10
115 116 6.830838 GTCTTTCCATTCATTCCTAGTGGATT 59.169 38.462 0.00 0.00 42.81 3.01
123 124 3.309410 CCCCAGTCTTTCCATTCATTCCT 60.309 47.826 0.00 0.00 0.00 3.36
135 136 6.893020 AATGAAGATACTACCCCAGTCTTT 57.107 37.500 0.00 0.00 38.80 2.52
210 213 4.141914 CCATCCTCTTACCTAAAGACGCTT 60.142 45.833 0.00 0.00 39.36 4.68
211 214 3.385111 CCATCCTCTTACCTAAAGACGCT 59.615 47.826 0.00 0.00 39.36 5.07
225 228 2.053244 GACCACATCCATCCATCCTCT 58.947 52.381 0.00 0.00 0.00 3.69
260 263 1.214589 GTCTACAAGAAGCCGGCGA 59.785 57.895 23.20 6.54 0.00 5.54
265 268 1.066071 GGGGACAGTCTACAAGAAGCC 60.066 57.143 0.00 0.00 0.00 4.35
287 313 2.375345 ATCCCACCTGGCCTAACCG 61.375 63.158 3.32 0.00 43.94 4.44
333 362 2.033424 GTGTTTTGCCAAGGACTGAGTC 59.967 50.000 3.47 3.47 0.00 3.36
347 376 2.080654 TCCTTCCCCCTTGTGTTTTG 57.919 50.000 0.00 0.00 0.00 2.44
350 379 1.529744 TCTTCCTTCCCCCTTGTGTT 58.470 50.000 0.00 0.00 0.00 3.32
380 411 3.483574 CCGCACGCACTTTACTTAATGAG 60.484 47.826 0.00 0.00 0.00 2.90
392 423 4.664677 GGTCTCACCGCACGCACT 62.665 66.667 0.00 0.00 0.00 4.40
397 428 1.098712 TGTTTTGGGTCTCACCGCAC 61.099 55.000 0.00 0.00 39.83 5.34
412 443 2.514803 CTCCATCCCCTTCGTTTGTTT 58.485 47.619 0.00 0.00 0.00 2.83
427 458 0.397816 CCTCTTCGGTCTCCCTCCAT 60.398 60.000 0.00 0.00 0.00 3.41
470 501 1.425066 ACTGGAAGCTGTTGATCCCAA 59.575 47.619 0.00 0.00 37.60 4.12
479 510 4.799564 TTTTGAAAACACTGGAAGCTGT 57.200 36.364 0.00 0.00 37.60 4.40
526 576 5.633655 TTCCCCTTTTGTAACTACTGTCA 57.366 39.130 0.00 0.00 0.00 3.58
533 583 5.887754 TGAGCTATTTCCCCTTTTGTAACT 58.112 37.500 0.00 0.00 0.00 2.24
534 584 5.710567 ACTGAGCTATTTCCCCTTTTGTAAC 59.289 40.000 0.00 0.00 0.00 2.50
535 585 5.887754 ACTGAGCTATTTCCCCTTTTGTAA 58.112 37.500 0.00 0.00 0.00 2.41
536 586 5.514500 ACTGAGCTATTTCCCCTTTTGTA 57.486 39.130 0.00 0.00 0.00 2.41
538 588 4.082026 CCAACTGAGCTATTTCCCCTTTTG 60.082 45.833 0.00 0.00 0.00 2.44
539 589 4.089361 CCAACTGAGCTATTTCCCCTTTT 58.911 43.478 0.00 0.00 0.00 2.27
540 590 3.076032 ACCAACTGAGCTATTTCCCCTTT 59.924 43.478 0.00 0.00 0.00 3.11
541 591 2.649816 ACCAACTGAGCTATTTCCCCTT 59.350 45.455 0.00 0.00 0.00 3.95
542 592 2.279173 ACCAACTGAGCTATTTCCCCT 58.721 47.619 0.00 0.00 0.00 4.79
543 593 2.808906 ACCAACTGAGCTATTTCCCC 57.191 50.000 0.00 0.00 0.00 4.81
544 594 5.099042 TCTAACCAACTGAGCTATTTCCC 57.901 43.478 0.00 0.00 0.00 3.97
545 595 5.582665 CACTCTAACCAACTGAGCTATTTCC 59.417 44.000 0.00 0.00 0.00 3.13
546 596 6.166982 ACACTCTAACCAACTGAGCTATTTC 58.833 40.000 0.00 0.00 0.00 2.17
547 597 6.115448 ACACTCTAACCAACTGAGCTATTT 57.885 37.500 0.00 0.00 0.00 1.40
548 598 5.746990 ACACTCTAACCAACTGAGCTATT 57.253 39.130 0.00 0.00 0.00 1.73
549 599 5.482908 CAACACTCTAACCAACTGAGCTAT 58.517 41.667 0.00 0.00 0.00 2.97
550 600 4.262463 CCAACACTCTAACCAACTGAGCTA 60.262 45.833 0.00 0.00 0.00 3.32
551 601 3.495100 CCAACACTCTAACCAACTGAGCT 60.495 47.826 0.00 0.00 0.00 4.09
552 602 2.808543 CCAACACTCTAACCAACTGAGC 59.191 50.000 0.00 0.00 0.00 4.26
553 603 4.073293 ACCAACACTCTAACCAACTGAG 57.927 45.455 0.00 0.00 0.00 3.35
554 604 4.497291 AACCAACACTCTAACCAACTGA 57.503 40.909 0.00 0.00 0.00 3.41
555 605 4.398044 ACAAACCAACACTCTAACCAACTG 59.602 41.667 0.00 0.00 0.00 3.16
556 606 4.595986 ACAAACCAACACTCTAACCAACT 58.404 39.130 0.00 0.00 0.00 3.16
557 607 4.396790 TGACAAACCAACACTCTAACCAAC 59.603 41.667 0.00 0.00 0.00 3.77
558 608 4.396790 GTGACAAACCAACACTCTAACCAA 59.603 41.667 0.00 0.00 0.00 3.67
559 609 3.942748 GTGACAAACCAACACTCTAACCA 59.057 43.478 0.00 0.00 0.00 3.67
560 610 3.001939 CGTGACAAACCAACACTCTAACC 59.998 47.826 0.00 0.00 33.13 2.85
561 611 3.545426 GCGTGACAAACCAACACTCTAAC 60.545 47.826 0.00 0.00 33.13 2.34
562 612 2.610374 GCGTGACAAACCAACACTCTAA 59.390 45.455 0.00 0.00 33.13 2.10
563 613 2.206750 GCGTGACAAACCAACACTCTA 58.793 47.619 0.00 0.00 33.13 2.43
564 614 1.014352 GCGTGACAAACCAACACTCT 58.986 50.000 0.00 0.00 33.13 3.24
565 615 0.028902 GGCGTGACAAACCAACACTC 59.971 55.000 0.00 0.00 33.13 3.51
566 616 0.678366 TGGCGTGACAAACCAACACT 60.678 50.000 0.00 0.00 33.13 3.55
567 617 0.248458 CTGGCGTGACAAACCAACAC 60.248 55.000 0.00 0.00 31.81 3.32
568 618 0.393132 TCTGGCGTGACAAACCAACA 60.393 50.000 0.00 0.00 31.81 3.33
569 619 0.951558 ATCTGGCGTGACAAACCAAC 59.048 50.000 0.00 0.00 31.81 3.77
570 620 1.234821 GATCTGGCGTGACAAACCAA 58.765 50.000 0.00 0.00 31.81 3.67
571 621 0.107643 TGATCTGGCGTGACAAACCA 59.892 50.000 0.00 0.00 0.00 3.67
572 622 1.453155 ATGATCTGGCGTGACAAACC 58.547 50.000 0.00 0.00 0.00 3.27
573 623 4.084328 GCTATATGATCTGGCGTGACAAAC 60.084 45.833 0.00 0.00 0.00 2.93
574 624 4.058124 GCTATATGATCTGGCGTGACAAA 58.942 43.478 0.00 0.00 0.00 2.83
575 625 3.069443 TGCTATATGATCTGGCGTGACAA 59.931 43.478 0.00 0.00 0.00 3.18
576 626 2.627699 TGCTATATGATCTGGCGTGACA 59.372 45.455 0.00 0.00 0.00 3.58
577 627 3.303881 TGCTATATGATCTGGCGTGAC 57.696 47.619 0.00 0.00 0.00 3.67
578 628 3.862264 GCTTGCTATATGATCTGGCGTGA 60.862 47.826 0.00 0.00 0.00 4.35
579 629 2.414481 GCTTGCTATATGATCTGGCGTG 59.586 50.000 0.00 0.00 0.00 5.34
580 630 2.301296 AGCTTGCTATATGATCTGGCGT 59.699 45.455 0.00 0.00 0.00 5.68
581 631 2.969990 AGCTTGCTATATGATCTGGCG 58.030 47.619 0.00 0.00 0.00 5.69
582 632 6.373774 ACATAAAGCTTGCTATATGATCTGGC 59.626 38.462 18.42 0.00 31.71 4.85
583 633 7.918536 ACATAAAGCTTGCTATATGATCTGG 57.081 36.000 18.42 0.00 31.71 3.86
608 658 9.785982 GGATCTGGAGCTTTCTAAACTTATATT 57.214 33.333 0.00 0.00 0.00 1.28
609 659 8.091449 CGGATCTGGAGCTTTCTAAACTTATAT 58.909 37.037 0.00 0.00 0.00 0.86
610 660 7.287005 TCGGATCTGGAGCTTTCTAAACTTATA 59.713 37.037 0.62 0.00 0.00 0.98
611 661 6.098409 TCGGATCTGGAGCTTTCTAAACTTAT 59.902 38.462 0.62 0.00 0.00 1.73
628 678 3.126831 GTGTAAAGAGGCATCGGATCTG 58.873 50.000 0.00 0.00 0.00 2.90
642 692 6.633500 TGAGGATTGAACAAAGGTGTAAAG 57.367 37.500 0.00 0.00 36.80 1.85
643 693 6.378564 TGTTGAGGATTGAACAAAGGTGTAAA 59.621 34.615 0.00 0.00 36.80 2.01
646 696 4.277476 TGTTGAGGATTGAACAAAGGTGT 58.723 39.130 0.00 0.00 40.75 4.16
670 720 7.936847 CCCTTTAAAGTTTTTCTTATTGGCCTT 59.063 33.333 14.03 0.00 35.02 4.35
681 731 7.661968 AGCATCTTCTCCCTTTAAAGTTTTTC 58.338 34.615 14.03 0.00 0.00 2.29
712 763 5.194432 TGTGTTTAGGAAGGTGCTTACAAA 58.806 37.500 0.00 0.00 0.00 2.83
713 764 4.783055 TGTGTTTAGGAAGGTGCTTACAA 58.217 39.130 0.00 0.00 0.00 2.41
714 765 4.425180 TGTGTTTAGGAAGGTGCTTACA 57.575 40.909 0.00 0.00 0.00 2.41
715 766 5.246307 AGATGTGTTTAGGAAGGTGCTTAC 58.754 41.667 0.00 0.00 0.00 2.34
716 767 5.499004 AGATGTGTTTAGGAAGGTGCTTA 57.501 39.130 0.00 0.00 0.00 3.09
717 768 4.373156 AGATGTGTTTAGGAAGGTGCTT 57.627 40.909 0.00 0.00 0.00 3.91
718 769 4.074970 CAAGATGTGTTTAGGAAGGTGCT 58.925 43.478 0.00 0.00 0.00 4.40
735 786 6.351286 CCTTTAGGGCTTGTAAAATGCAAGAT 60.351 38.462 11.59 0.85 44.29 2.40
736 787 5.047377 CCTTTAGGGCTTGTAAAATGCAAGA 60.047 40.000 11.59 0.00 44.29 3.02
760 811 3.934962 GGCCTGAGGATCCCGCTC 61.935 72.222 8.55 0.00 0.00 5.03
876 934 2.543777 TTCAACCGAGTTCAAGAGGG 57.456 50.000 0.00 0.00 0.00 4.30
1262 1332 3.965539 AAGCCGCTCGAAGCAGCAT 62.966 57.895 14.57 3.33 46.59 3.79
1309 1379 2.711542 CCTAGTTCGCCAGACCAAATT 58.288 47.619 0.00 0.00 0.00 1.82
1430 1500 3.397849 TTGCTCTAGCCTGCATCTATG 57.602 47.619 0.00 0.00 41.18 2.23
1448 1518 5.413499 CCACCAATTAGCCTGAAGAATTTG 58.587 41.667 0.00 0.00 0.00 2.32
1513 1602 3.473093 TTCAGCGACAAACGAAAAACA 57.527 38.095 0.00 0.00 45.77 2.83
1564 1653 0.038890 TGGTTCCATGGCGAATTCCA 59.961 50.000 6.96 6.12 40.97 3.53
1674 1763 0.409092 ACCAAAGACATGCCCATGGA 59.591 50.000 15.22 0.00 42.91 3.41
1725 1814 2.509052 TCTCAAGTGACTTGACACCG 57.491 50.000 23.02 13.87 44.27 4.94
1749 1838 5.333566 GGGGGTTATAATCAATTCTCCCA 57.666 43.478 0.00 0.00 33.59 4.37
1804 1896 1.562783 AGAAGGAAGGGAGACGAAGG 58.437 55.000 0.00 0.00 0.00 3.46
2097 4718 3.371063 GCGGACGACCAGGAGACA 61.371 66.667 4.48 0.00 35.59 3.41
2252 4873 3.153735 GTTCGTTTATGTTTCTGCTCGC 58.846 45.455 0.00 0.00 0.00 5.03
2745 5375 5.130350 ACTCAAACAAAAATTCTCGGGAGA 58.870 37.500 0.00 0.00 35.27 3.71
2746 5376 5.438761 ACTCAAACAAAAATTCTCGGGAG 57.561 39.130 0.00 0.00 0.00 4.30
2747 5377 6.945938 TTACTCAAACAAAAATTCTCGGGA 57.054 33.333 0.00 0.00 0.00 5.14
2748 5378 7.995463 TTTTACTCAAACAAAAATTCTCGGG 57.005 32.000 0.00 0.00 0.00 5.14
2749 5379 9.243637 TGATTTTACTCAAACAAAAATTCTCGG 57.756 29.630 0.00 0.00 33.99 4.63
2842 5472 0.603439 TGCAATGCTCGACTCTGCAA 60.603 50.000 6.82 0.00 42.74 4.08
2891 5521 3.118454 AGTGTTTCGATGCCGCCG 61.118 61.111 0.00 0.00 35.37 6.46
3200 5945 6.550938 TGAGCTTCTCAATCTGGAATAAGA 57.449 37.500 0.00 0.00 37.57 2.10
3243 5988 4.082463 TCCATGGTCGCCTTTTTGTTATTC 60.082 41.667 12.58 0.00 0.00 1.75
3378 6123 6.597562 TGTCCAAGAATTGTTACCTAAGTGT 58.402 36.000 0.00 0.00 46.99 3.55
3381 6126 6.431234 AGCTTGTCCAAGAATTGTTACCTAAG 59.569 38.462 11.12 0.00 46.99 2.18
3407 6152 7.180051 AGTTTATCAAAGGATTGGGCAATTACA 59.820 33.333 0.00 0.00 37.15 2.41
3411 6156 5.960202 AGAGTTTATCAAAGGATTGGGCAAT 59.040 36.000 0.00 0.00 37.15 3.56
3416 6161 6.209391 ACCACAAGAGTTTATCAAAGGATTGG 59.791 38.462 0.00 0.00 37.15 3.16
3501 6247 8.882415 TGTATCGATCTCCTTTTTAACCATAC 57.118 34.615 0.00 0.00 0.00 2.39
3526 6275 6.374417 AACCCACTATGAGTCTGTAACAAT 57.626 37.500 0.00 0.00 0.00 2.71
3531 6280 5.255687 TCGTTAACCCACTATGAGTCTGTA 58.744 41.667 0.00 0.00 0.00 2.74
3532 6281 4.084287 TCGTTAACCCACTATGAGTCTGT 58.916 43.478 0.00 0.00 0.00 3.41
3866 6628 2.554344 CCCTTGATTTCCCCGAAAGTCA 60.554 50.000 0.00 0.00 34.92 3.41
4075 6939 4.726035 AGGATTGAGGAGAATGCATCAT 57.274 40.909 0.00 0.00 0.00 2.45
4206 7070 8.818057 GTCATGTTACCTTACTGACATATTCAC 58.182 37.037 0.00 0.00 36.94 3.18
4246 7110 6.546034 GTGGAGCAAATAGGAAAAGGCTAATA 59.454 38.462 0.00 0.00 0.00 0.98
4474 7422 5.061064 GCATCGTCGTCATTATCATCCTTAC 59.939 44.000 0.00 0.00 0.00 2.34
4485 7433 0.246360 TGACAGGCATCGTCGTCATT 59.754 50.000 0.00 0.00 36.11 2.57
4487 7435 0.458370 CATGACAGGCATCGTCGTCA 60.458 55.000 0.00 0.00 42.19 4.35
4535 7491 8.641498 AATCACTTGTTAGATGAGGTTCAAAT 57.359 30.769 0.00 0.00 0.00 2.32
4567 7523 7.578169 AAGTAACAATCAGTAAACTACTCGC 57.422 36.000 0.00 0.00 36.76 5.03
4681 7637 6.749923 AAAGCAAAGTAAGAAGAGGCATAG 57.250 37.500 0.00 0.00 0.00 2.23
5026 7996 7.584108 CCATAAACACATGCATATATGACGTT 58.416 34.615 17.10 8.05 32.61 3.99
5153 8126 7.729124 AATGACAGGAATCCATTTCTTCAAT 57.271 32.000 0.61 0.00 34.56 2.57
5202 8175 4.808558 TGCACATAAGGTTCTGCAATTTC 58.191 39.130 0.00 0.00 36.71 2.17
5206 8179 4.558178 CATTTGCACATAAGGTTCTGCAA 58.442 39.130 0.00 0.00 45.52 4.08
5210 8183 4.666512 AGACCATTTGCACATAAGGTTCT 58.333 39.130 0.00 0.00 0.00 3.01
5354 8327 2.678336 GACAACACTATGGCCTAAGTGC 59.322 50.000 27.78 14.30 45.65 4.40
5513 8486 0.179034 CATACTCCTGGCCTGCCTTC 60.179 60.000 9.97 0.00 36.94 3.46
5546 8519 5.359756 TGCTGATGGTATAAAGTAGCTGTG 58.640 41.667 0.00 0.00 0.00 3.66
5779 8771 9.970395 AATTTACCAATGATACAGTGCAATATG 57.030 29.630 0.00 0.00 0.00 1.78
5797 8789 2.888212 AGAGGGCTGCAAAATTTACCA 58.112 42.857 0.50 0.00 0.00 3.25
6006 9008 6.443849 TGTATCTCCAAGAAATTCTGGTAGGT 59.556 38.462 0.00 0.00 0.00 3.08
6031 9033 0.547954 GGAGGAACAAGAGGGAGGGT 60.548 60.000 0.00 0.00 0.00 4.34
6165 9168 2.267006 CTCCCGCAGCAGTCACAT 59.733 61.111 0.00 0.00 0.00 3.21
6174 9177 2.325583 TAATTACAAGCCTCCCGCAG 57.674 50.000 0.00 0.00 41.38 5.18
6392 9398 3.122948 GCGTATACACAGTTCAACACAGG 59.877 47.826 3.32 0.00 0.00 4.00
6434 9440 5.957798 AGTTAACCATGATGCTGTTTCATG 58.042 37.500 0.88 12.25 46.49 3.07
6497 9503 6.421801 GGCCATTTTATTGCAGTTGCTAATAG 59.578 38.462 0.00 0.00 42.66 1.73
6498 9504 6.098124 AGGCCATTTTATTGCAGTTGCTAATA 59.902 34.615 5.01 5.54 42.66 0.98
6499 9505 5.104817 AGGCCATTTTATTGCAGTTGCTAAT 60.105 36.000 5.01 6.39 42.66 1.73
6501 9507 3.768757 AGGCCATTTTATTGCAGTTGCTA 59.231 39.130 5.01 0.00 42.66 3.49
6511 9519 5.960202 ACTTGGATCTTCAGGCCATTTTATT 59.040 36.000 5.01 0.00 0.00 1.40
6512 9520 5.522641 ACTTGGATCTTCAGGCCATTTTAT 58.477 37.500 5.01 0.00 0.00 1.40
6627 9635 0.112218 CCACACCAACTCCCCATTCA 59.888 55.000 0.00 0.00 0.00 2.57
6634 9642 1.318576 CCAGAAACCACACCAACTCC 58.681 55.000 0.00 0.00 0.00 3.85
6754 9762 4.315803 ACAGAACATATACGGGCATAAGC 58.684 43.478 0.00 0.00 41.10 3.09
6773 9781 7.476667 CAGACTTCTGTTAGGAGTATGTACAG 58.523 42.308 0.33 0.00 39.09 2.74
6798 9806 6.531439 CGTTTTAAATACACTACTGACCAGC 58.469 40.000 0.00 0.00 0.00 4.85
6897 9907 1.746470 TCTTGGTGATGCTGCATGAG 58.254 50.000 21.53 9.55 0.00 2.90
6967 9977 4.717629 TCGGCGCTTGTGTCTCCG 62.718 66.667 7.64 0.00 41.30 4.63
6990 10000 4.018484 ACAGTCTACGGTCTACTTGTCT 57.982 45.455 0.00 0.00 0.00 3.41
7065 10075 4.823989 GGGATTTGGATCAGATGTTACTGG 59.176 45.833 0.00 0.00 38.31 4.00
7275 10289 7.596248 ACAAAACTGACATGTGAATGATTTAGC 59.404 33.333 1.15 0.00 0.00 3.09
7467 10483 1.349688 GCCGATACAATACATGGGGGA 59.650 52.381 0.00 0.00 0.00 4.81
7483 10499 3.583276 ATCACGCAGAAACGGCCGA 62.583 57.895 35.90 4.92 37.37 5.54
7498 10514 2.829720 ACCCTACTTAGCAACGTGATCA 59.170 45.455 0.00 0.00 0.00 2.92
7511 10527 7.496920 GCATATTTAACCTCGTAAACCCTACTT 59.503 37.037 0.00 0.00 0.00 2.24
7534 10550 6.037172 GTGTCCACTAAAACGAATATCTGCAT 59.963 38.462 0.00 0.00 0.00 3.96
7560 10576 5.568482 CGCTAACAGCTGCAACATAATAAA 58.432 37.500 15.27 0.00 39.60 1.40
7584 10600 1.265905 GCCCCAAGTACACTCAAAACG 59.734 52.381 0.00 0.00 0.00 3.60
7604 10620 1.197721 GGAAGTTGTGAGCACGGATTG 59.802 52.381 0.00 0.00 0.00 2.67
7683 10700 4.194640 CCTAGTACACTACTCCAGCGTAA 58.805 47.826 0.00 0.00 40.14 3.18
7722 10739 1.844497 AGGGTAATCCTCCTTTTCCGG 59.156 52.381 0.00 0.00 44.06 5.14
7742 10762 0.388659 GTGTGCATCACAAAGGCCAA 59.611 50.000 5.01 0.00 46.28 4.52
7752 10772 5.712004 CAATAAAGATGGTTGTGTGCATCA 58.288 37.500 0.00 0.00 0.00 3.07
7811 10831 4.578105 CAGGAAGATGGCTTTAGGTTGATC 59.422 45.833 0.00 0.00 33.61 2.92
7817 10837 2.239654 TCACCAGGAAGATGGCTTTAGG 59.760 50.000 0.00 0.00 44.80 2.69
7819 10839 4.380843 TTTCACCAGGAAGATGGCTTTA 57.619 40.909 0.00 0.00 44.80 1.85
7823 10843 3.259123 ACAATTTTCACCAGGAAGATGGC 59.741 43.478 0.00 0.00 44.80 4.40
7831 10851 1.693606 AGGGCAACAATTTTCACCAGG 59.306 47.619 0.00 0.00 39.74 4.45
7832 10852 3.306019 GGTAGGGCAACAATTTTCACCAG 60.306 47.826 0.00 0.00 39.74 4.00
7833 10853 2.630580 GGTAGGGCAACAATTTTCACCA 59.369 45.455 0.00 0.00 39.74 4.17
7834 10854 2.897326 AGGTAGGGCAACAATTTTCACC 59.103 45.455 0.00 0.00 39.74 4.02
7835 10855 4.521256 TGTAGGTAGGGCAACAATTTTCAC 59.479 41.667 0.00 0.00 39.74 3.18
7836 10856 4.730966 TGTAGGTAGGGCAACAATTTTCA 58.269 39.130 0.00 0.00 39.74 2.69
7837 10857 5.475564 TCTTGTAGGTAGGGCAACAATTTTC 59.524 40.000 0.00 0.00 39.74 2.29
7838 10858 5.390387 TCTTGTAGGTAGGGCAACAATTTT 58.610 37.500 0.00 0.00 39.74 1.82
7839 10859 4.993028 TCTTGTAGGTAGGGCAACAATTT 58.007 39.130 0.00 0.00 39.74 1.82
7840 10860 4.650972 TCTTGTAGGTAGGGCAACAATT 57.349 40.909 0.00 0.00 39.74 2.32
7841 10861 4.862641 ATCTTGTAGGTAGGGCAACAAT 57.137 40.909 0.00 0.00 39.74 2.71
7842 10862 4.042311 TCAATCTTGTAGGTAGGGCAACAA 59.958 41.667 0.00 0.00 39.74 2.83
7843 10863 3.585289 TCAATCTTGTAGGTAGGGCAACA 59.415 43.478 0.00 0.00 39.74 3.33
7844 10864 4.216411 TCAATCTTGTAGGTAGGGCAAC 57.784 45.455 0.00 0.00 0.00 4.17
7845 10865 4.473196 TCATCAATCTTGTAGGTAGGGCAA 59.527 41.667 0.00 0.00 0.00 4.52
7846 10866 4.037222 TCATCAATCTTGTAGGTAGGGCA 58.963 43.478 0.00 0.00 0.00 5.36
7847 10867 4.689612 TCATCAATCTTGTAGGTAGGGC 57.310 45.455 0.00 0.00 0.00 5.19
7848 10868 6.179906 ACATCATCAATCTTGTAGGTAGGG 57.820 41.667 0.00 0.00 0.00 3.53
7849 10869 6.708054 GGAACATCATCAATCTTGTAGGTAGG 59.292 42.308 0.00 0.00 0.00 3.18
7850 10870 7.504403 AGGAACATCATCAATCTTGTAGGTAG 58.496 38.462 0.00 0.00 0.00 3.18
7851 10871 7.345653 AGAGGAACATCATCAATCTTGTAGGTA 59.654 37.037 0.00 0.00 28.01 3.08
7852 10872 6.157645 AGAGGAACATCATCAATCTTGTAGGT 59.842 38.462 0.00 0.00 28.01 3.08
7853 10873 6.590068 AGAGGAACATCATCAATCTTGTAGG 58.410 40.000 0.00 0.00 28.01 3.18
7854 10874 8.503458 AAAGAGGAACATCATCAATCTTGTAG 57.497 34.615 0.00 0.00 31.30 2.74
7916 10937 4.965200 AGATGGCTTTGGGTAGATCTAC 57.035 45.455 22.47 22.47 35.40 2.59
7923 10944 1.681229 AGGGAAGATGGCTTTGGGTA 58.319 50.000 0.00 0.00 33.61 3.69
7925 10946 2.379005 GTAAGGGAAGATGGCTTTGGG 58.621 52.381 0.00 0.00 33.61 4.12
7951 10972 8.798975 TTGTAGGTAGGGAAAGATATCAATCT 57.201 34.615 5.32 0.00 44.67 2.40
7952 10973 8.871125 TCTTGTAGGTAGGGAAAGATATCAATC 58.129 37.037 5.32 2.47 0.00 2.67
7953 10974 8.798975 TCTTGTAGGTAGGGAAAGATATCAAT 57.201 34.615 5.32 0.00 0.00 2.57
7954 10975 8.798975 ATCTTGTAGGTAGGGAAAGATATCAA 57.201 34.615 5.32 0.00 36.17 2.57
7955 10976 8.651389 CAATCTTGTAGGTAGGGAAAGATATCA 58.349 37.037 5.32 0.00 36.76 2.15
7956 10977 8.871125 TCAATCTTGTAGGTAGGGAAAGATATC 58.129 37.037 0.00 0.00 36.76 1.63
7957 10978 8.798975 TCAATCTTGTAGGTAGGGAAAGATAT 57.201 34.615 0.00 0.00 36.76 1.63
7958 10979 8.651389 CATCAATCTTGTAGGTAGGGAAAGATA 58.349 37.037 0.00 0.00 36.76 1.98
7959 10980 7.348274 TCATCAATCTTGTAGGTAGGGAAAGAT 59.652 37.037 0.00 0.00 38.83 2.40
7960 10981 6.672218 TCATCAATCTTGTAGGTAGGGAAAGA 59.328 38.462 0.00 0.00 0.00 2.52
7961 10982 6.889198 TCATCAATCTTGTAGGTAGGGAAAG 58.111 40.000 0.00 0.00 0.00 2.62
7962 10983 6.884472 TCATCAATCTTGTAGGTAGGGAAA 57.116 37.500 0.00 0.00 0.00 3.13
7963 10984 6.386927 ACATCATCAATCTTGTAGGTAGGGAA 59.613 38.462 0.00 0.00 0.00 3.97
7964 10985 5.905331 ACATCATCAATCTTGTAGGTAGGGA 59.095 40.000 0.00 0.00 0.00 4.20
7965 10986 5.994054 CACATCATCAATCTTGTAGGTAGGG 59.006 44.000 0.00 0.00 0.00 3.53
7966 10987 5.468072 GCACATCATCAATCTTGTAGGTAGG 59.532 44.000 0.00 0.00 0.00 3.18
7967 10988 6.051074 TGCACATCATCAATCTTGTAGGTAG 58.949 40.000 0.00 0.00 0.00 3.18
7968 10989 5.988287 TGCACATCATCAATCTTGTAGGTA 58.012 37.500 0.00 0.00 0.00 3.08
7969 10990 4.847198 TGCACATCATCAATCTTGTAGGT 58.153 39.130 0.00 0.00 0.00 3.08
7970 10991 5.758924 CATGCACATCATCAATCTTGTAGG 58.241 41.667 0.00 0.00 31.79 3.18
7971 10992 5.212934 GCATGCACATCATCAATCTTGTAG 58.787 41.667 14.21 0.00 31.79 2.74
7972 10993 4.641094 TGCATGCACATCATCAATCTTGTA 59.359 37.500 18.46 0.00 31.79 2.41
7973 10994 3.445805 TGCATGCACATCATCAATCTTGT 59.554 39.130 18.46 0.00 31.79 3.16
7974 10995 3.796717 GTGCATGCACATCATCAATCTTG 59.203 43.478 39.12 0.00 45.53 3.02
7975 10996 4.041740 GTGCATGCACATCATCAATCTT 57.958 40.909 39.12 0.00 45.53 2.40
7976 10997 3.710326 GTGCATGCACATCATCAATCT 57.290 42.857 39.12 0.00 45.53 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.