Multiple sequence alignment - TraesCS5A01G275300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G275300 chr5A 100.000 2396 0 0 1 2396 484829979 484832374 0.000000e+00 4425.0
1 TraesCS5A01G275300 chr7B 99.338 1662 10 1 736 2396 257652476 257654137 0.000000e+00 3007.0
2 TraesCS5A01G275300 chr7A 99.037 1662 15 1 736 2396 299313374 299311713 0.000000e+00 2979.0
3 TraesCS5A01G275300 chr7A 83.663 202 29 4 537 738 84822741 84822544 1.130000e-43 187.0
4 TraesCS5A01G275300 chr2A 98.857 1662 18 1 736 2396 166818329 166816668 0.000000e+00 2963.0
5 TraesCS5A01G275300 chr5B 98.681 1668 15 2 736 2396 47328164 47326497 0.000000e+00 2952.0
6 TraesCS5A01G275300 chr5B 98.442 1669 18 2 736 2396 47323119 47321451 0.000000e+00 2931.0
7 TraesCS5A01G275300 chr5B 94.872 39 2 0 495 533 54389744 54389782 7.150000e-06 62.1
8 TraesCS5A01G275300 chr1A 98.793 1657 19 1 741 2396 546232125 546233781 0.000000e+00 2948.0
9 TraesCS5A01G275300 chr1B 97.954 1662 19 6 736 2396 526807663 526809310 0.000000e+00 2867.0
10 TraesCS5A01G275300 chr1B 92.208 385 24 3 359 739 200984079 200983697 7.540000e-150 540.0
11 TraesCS5A01G275300 chr1B 95.604 182 7 1 68 248 200984331 200984150 8.380000e-75 291.0
12 TraesCS5A01G275300 chr1B 90.476 63 5 1 388 450 14742343 14742282 5.490000e-12 82.4
13 TraesCS5A01G275300 chr6B 95.384 1668 70 5 736 2396 246983375 246985042 0.000000e+00 2647.0
14 TraesCS5A01G275300 chr6B 94.294 1665 81 7 741 2396 420862196 420863855 0.000000e+00 2536.0
15 TraesCS5A01G275300 chr6B 90.649 385 30 3 359 739 55342363 55341981 7.640000e-140 507.0
16 TraesCS5A01G275300 chr6B 97.266 256 6 1 2141 2396 63360942 63361196 1.320000e-117 433.0
17 TraesCS5A01G275300 chr6B 96.154 182 6 1 68 248 55342612 55342431 1.800000e-76 296.0
18 TraesCS5A01G275300 chr6B 92.157 51 4 0 1 51 55342690 55342640 3.300000e-09 73.1
19 TraesCS5A01G275300 chr3B 92.442 344 24 2 359 700 801110603 801110260 7.700000e-135 490.0
20 TraesCS5A01G275300 chr3B 95.055 182 8 1 68 248 801110853 801110672 3.900000e-73 285.0
21 TraesCS5A01G275300 chr7D 86.667 90 12 0 350 439 130231099 130231188 1.520000e-17 100.0
22 TraesCS5A01G275300 chr6A 81.188 101 19 0 350 450 31887762 31887662 5.490000e-12 82.4
23 TraesCS5A01G275300 chr4B 90.476 63 5 1 388 450 668983808 668983747 5.490000e-12 82.4
24 TraesCS5A01G275300 chr4B 90.476 63 5 1 388 450 669150263 669150324 5.490000e-12 82.4
25 TraesCS5A01G275300 chr4B 90.476 63 5 1 388 450 669320244 669320305 5.490000e-12 82.4
26 TraesCS5A01G275300 chr5D 95.238 42 2 0 495 536 51119949 51119990 1.540000e-07 67.6
27 TraesCS5A01G275300 chr5D 95.238 42 2 0 495 536 51137431 51137472 1.540000e-07 67.6
28 TraesCS5A01G275300 chr5D 95.238 42 2 0 495 536 51157367 51157408 1.540000e-07 67.6
29 TraesCS5A01G275300 chr5D 95.238 42 2 0 495 536 51177871 51177912 1.540000e-07 67.6
30 TraesCS5A01G275300 chr5D 95.238 42 2 0 495 536 51196817 51196858 1.540000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G275300 chr5A 484829979 484832374 2395 False 4425.000000 4425 100.000000 1 2396 1 chr5A.!!$F1 2395
1 TraesCS5A01G275300 chr7B 257652476 257654137 1661 False 3007.000000 3007 99.338000 736 2396 1 chr7B.!!$F1 1660
2 TraesCS5A01G275300 chr7A 299311713 299313374 1661 True 2979.000000 2979 99.037000 736 2396 1 chr7A.!!$R2 1660
3 TraesCS5A01G275300 chr2A 166816668 166818329 1661 True 2963.000000 2963 98.857000 736 2396 1 chr2A.!!$R1 1660
4 TraesCS5A01G275300 chr5B 47321451 47328164 6713 True 2941.500000 2952 98.561500 736 2396 2 chr5B.!!$R1 1660
5 TraesCS5A01G275300 chr1A 546232125 546233781 1656 False 2948.000000 2948 98.793000 741 2396 1 chr1A.!!$F1 1655
6 TraesCS5A01G275300 chr1B 526807663 526809310 1647 False 2867.000000 2867 97.954000 736 2396 1 chr1B.!!$F1 1660
7 TraesCS5A01G275300 chr1B 200983697 200984331 634 True 415.500000 540 93.906000 68 739 2 chr1B.!!$R2 671
8 TraesCS5A01G275300 chr6B 246983375 246985042 1667 False 2647.000000 2647 95.384000 736 2396 1 chr6B.!!$F2 1660
9 TraesCS5A01G275300 chr6B 420862196 420863855 1659 False 2536.000000 2536 94.294000 741 2396 1 chr6B.!!$F3 1655
10 TraesCS5A01G275300 chr6B 55341981 55342690 709 True 292.033333 507 92.986667 1 739 3 chr6B.!!$R1 738
11 TraesCS5A01G275300 chr3B 801110260 801110853 593 True 387.500000 490 93.748500 68 700 2 chr3B.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 822 1.063327 CGTCGCTGGTGTTTTTGCA 59.937 52.632 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1774 7.399765 TCATGAAGAAATAAAATGGGTGGACAT 59.6 33.333 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.202188 TCGTATTTCCAGTTTCTCAAGTTCAC 59.798 38.462 0.00 0.00 0.00 3.18
40 41 6.202954 CGTATTTCCAGTTTCTCAAGTTCACT 59.797 38.462 0.00 0.00 0.00 3.41
47 48 6.201806 CCAGTTTCTCAAGTTCACTGTTCTAG 59.798 42.308 0.00 0.00 34.25 2.43
51 52 6.656632 TCTCAAGTTCACTGTTCTAGATGT 57.343 37.500 0.00 0.00 0.00 3.06
52 53 7.055667 TCTCAAGTTCACTGTTCTAGATGTT 57.944 36.000 0.00 0.00 0.00 2.71
53 54 7.500992 TCTCAAGTTCACTGTTCTAGATGTTT 58.499 34.615 0.00 0.00 0.00 2.83
55 56 7.047891 TCAAGTTCACTGTTCTAGATGTTTGT 58.952 34.615 0.00 0.00 0.00 2.83
57 58 6.349300 AGTTCACTGTTCTAGATGTTTGTGT 58.651 36.000 0.00 0.00 0.00 3.72
59 60 5.670485 TCACTGTTCTAGATGTTTGTGTGT 58.330 37.500 0.00 0.00 0.00 3.72
60 61 6.811954 TCACTGTTCTAGATGTTTGTGTGTA 58.188 36.000 0.00 0.00 0.00 2.90
61 62 7.441836 TCACTGTTCTAGATGTTTGTGTGTAT 58.558 34.615 0.00 0.00 0.00 2.29
62 63 7.931407 TCACTGTTCTAGATGTTTGTGTGTATT 59.069 33.333 0.00 0.00 0.00 1.89
63 64 8.559536 CACTGTTCTAGATGTTTGTGTGTATTT 58.440 33.333 0.00 0.00 0.00 1.40
64 65 9.120538 ACTGTTCTAGATGTTTGTGTGTATTTT 57.879 29.630 0.00 0.00 0.00 1.82
65 66 9.950680 CTGTTCTAGATGTTTGTGTGTATTTTT 57.049 29.630 0.00 0.00 0.00 1.94
86 98 4.647424 TTCCGTGAAGCAATCAAAAACT 57.353 36.364 0.00 0.00 40.50 2.66
147 159 7.223582 TGGTTACATGTTTTAAATGCAAGTGTG 59.776 33.333 2.30 2.67 0.00 3.82
236 248 6.394345 ACTTGGGAAGTGGATTAGAGAAAT 57.606 37.500 0.00 0.00 41.01 2.17
268 306 7.678194 AAAATTGACAATACAACGTGAAGTG 57.322 32.000 0.00 0.00 32.50 3.16
300 338 8.442632 AGGTTCATAAAGATGTATGTCATGTG 57.557 34.615 0.00 0.00 36.83 3.21
301 339 8.049117 AGGTTCATAAAGATGTATGTCATGTGT 58.951 33.333 0.00 0.00 36.83 3.72
302 340 8.338259 GGTTCATAAAGATGTATGTCATGTGTC 58.662 37.037 0.00 0.00 36.83 3.67
303 341 8.338259 GTTCATAAAGATGTATGTCATGTGTCC 58.662 37.037 0.00 0.00 36.83 4.02
304 342 7.563906 TCATAAAGATGTATGTCATGTGTCCA 58.436 34.615 0.00 0.00 36.83 4.02
305 343 7.712205 TCATAAAGATGTATGTCATGTGTCCAG 59.288 37.037 0.00 0.00 36.83 3.86
306 344 5.682234 AAGATGTATGTCATGTGTCCAGA 57.318 39.130 0.00 0.00 36.83 3.86
307 345 5.016051 AGATGTATGTCATGTGTCCAGAC 57.984 43.478 0.00 0.00 36.83 3.51
308 346 3.230743 TGTATGTCATGTGTCCAGACG 57.769 47.619 0.00 0.00 35.09 4.18
309 347 2.094234 TGTATGTCATGTGTCCAGACGG 60.094 50.000 0.00 0.00 35.09 4.79
310 348 1.266178 ATGTCATGTGTCCAGACGGA 58.734 50.000 0.00 0.00 39.79 4.69
311 349 1.266178 TGTCATGTGTCCAGACGGAT 58.734 50.000 0.00 0.00 45.33 4.18
312 350 1.204704 TGTCATGTGTCCAGACGGATC 59.795 52.381 0.00 0.00 45.33 3.36
313 351 1.204704 GTCATGTGTCCAGACGGATCA 59.795 52.381 0.00 0.00 45.33 2.92
314 352 2.110578 TCATGTGTCCAGACGGATCAT 58.889 47.619 0.00 0.00 45.33 2.45
315 353 3.068165 GTCATGTGTCCAGACGGATCATA 59.932 47.826 0.00 0.00 45.33 2.15
316 354 3.068165 TCATGTGTCCAGACGGATCATAC 59.932 47.826 0.00 0.00 45.33 2.39
317 355 2.735151 TGTGTCCAGACGGATCATACT 58.265 47.619 0.00 0.00 45.33 2.12
318 356 3.096852 TGTGTCCAGACGGATCATACTT 58.903 45.455 0.00 0.00 45.33 2.24
319 357 3.513912 TGTGTCCAGACGGATCATACTTT 59.486 43.478 0.00 0.00 45.33 2.66
320 358 4.020573 TGTGTCCAGACGGATCATACTTTT 60.021 41.667 0.00 0.00 45.33 2.27
321 359 4.935808 GTGTCCAGACGGATCATACTTTTT 59.064 41.667 0.00 0.00 45.33 1.94
322 360 5.063564 GTGTCCAGACGGATCATACTTTTTC 59.936 44.000 0.00 0.00 45.33 2.29
323 361 5.046591 TGTCCAGACGGATCATACTTTTTCT 60.047 40.000 0.00 0.00 45.33 2.52
324 362 5.875359 GTCCAGACGGATCATACTTTTTCTT 59.125 40.000 0.00 0.00 45.33 2.52
325 363 6.371825 GTCCAGACGGATCATACTTTTTCTTT 59.628 38.462 0.00 0.00 45.33 2.52
326 364 6.940298 TCCAGACGGATCATACTTTTTCTTTT 59.060 34.615 0.00 0.00 35.91 2.27
327 365 7.447238 TCCAGACGGATCATACTTTTTCTTTTT 59.553 33.333 0.00 0.00 35.91 1.94
328 366 7.750903 CCAGACGGATCATACTTTTTCTTTTTC 59.249 37.037 0.00 0.00 0.00 2.29
329 367 8.289618 CAGACGGATCATACTTTTTCTTTTTCA 58.710 33.333 0.00 0.00 0.00 2.69
330 368 8.846211 AGACGGATCATACTTTTTCTTTTTCAA 58.154 29.630 0.00 0.00 0.00 2.69
331 369 9.626045 GACGGATCATACTTTTTCTTTTTCAAT 57.374 29.630 0.00 0.00 0.00 2.57
332 370 9.410556 ACGGATCATACTTTTTCTTTTTCAATG 57.589 29.630 0.00 0.00 0.00 2.82
333 371 8.375465 CGGATCATACTTTTTCTTTTTCAATGC 58.625 33.333 0.00 0.00 0.00 3.56
334 372 9.206870 GGATCATACTTTTTCTTTTTCAATGCA 57.793 29.630 0.00 0.00 0.00 3.96
340 378 7.696755 ACTTTTTCTTTTTCAATGCATTCACC 58.303 30.769 9.53 0.00 0.00 4.02
341 379 7.336427 ACTTTTTCTTTTTCAATGCATTCACCA 59.664 29.630 9.53 0.00 0.00 4.17
342 380 7.804843 TTTTCTTTTTCAATGCATTCACCAT 57.195 28.000 9.53 0.00 0.00 3.55
343 381 7.424227 TTTCTTTTTCAATGCATTCACCATC 57.576 32.000 9.53 0.00 0.00 3.51
344 382 6.349243 TCTTTTTCAATGCATTCACCATCT 57.651 33.333 9.53 0.00 0.00 2.90
345 383 6.392354 TCTTTTTCAATGCATTCACCATCTC 58.608 36.000 9.53 0.00 0.00 2.75
346 384 4.724074 TTTCAATGCATTCACCATCTCC 57.276 40.909 9.53 0.00 0.00 3.71
347 385 3.369242 TCAATGCATTCACCATCTCCA 57.631 42.857 9.53 0.00 0.00 3.86
348 386 3.699413 TCAATGCATTCACCATCTCCAA 58.301 40.909 9.53 0.00 0.00 3.53
349 387 4.087907 TCAATGCATTCACCATCTCCAAA 58.912 39.130 9.53 0.00 0.00 3.28
350 388 4.712829 TCAATGCATTCACCATCTCCAAAT 59.287 37.500 9.53 0.00 0.00 2.32
351 389 5.188163 TCAATGCATTCACCATCTCCAAATT 59.812 36.000 9.53 0.00 0.00 1.82
352 390 4.459390 TGCATTCACCATCTCCAAATTG 57.541 40.909 0.00 0.00 0.00 2.32
353 391 4.087907 TGCATTCACCATCTCCAAATTGA 58.912 39.130 0.00 0.00 0.00 2.57
354 392 4.082081 TGCATTCACCATCTCCAAATTGAC 60.082 41.667 0.00 0.00 0.00 3.18
355 393 4.082081 GCATTCACCATCTCCAAATTGACA 60.082 41.667 0.00 0.00 0.00 3.58
356 394 5.567224 GCATTCACCATCTCCAAATTGACAA 60.567 40.000 0.00 0.00 0.00 3.18
357 395 6.457355 CATTCACCATCTCCAAATTGACAAA 58.543 36.000 0.00 0.00 0.00 2.83
365 403 5.436175 TCTCCAAATTGACAAAGTCACTGA 58.564 37.500 0.00 0.00 42.60 3.41
386 424 9.773328 CACTGACGTAATTATGACAAAATGAAT 57.227 29.630 11.69 0.00 0.00 2.57
435 473 9.880064 CAATCAGAAGAGATGCATACAAATAAG 57.120 33.333 0.00 0.00 0.00 1.73
439 477 8.333908 CAGAAGAGATGCATACAAATAAGTGTC 58.666 37.037 0.00 0.00 32.75 3.67
644 684 7.448748 AGTCAATTAAATGTGGGACAACTAC 57.551 36.000 0.00 0.00 44.16 2.73
647 687 6.148150 TCAATTAAATGTGGGACAACTACGAC 59.852 38.462 0.00 0.00 44.16 4.34
648 688 2.467566 AATGTGGGACAACTACGACC 57.532 50.000 0.00 0.00 44.16 4.79
684 724 3.726557 TGCTCAGTTCAAGGATGGAAT 57.273 42.857 0.00 0.00 0.00 3.01
688 728 5.047802 TGCTCAGTTCAAGGATGGAATTTTC 60.048 40.000 0.00 0.00 0.00 2.29
727 770 5.046376 CCTGGCAGGAAAAGGAACATTATTT 60.046 40.000 29.96 0.00 37.67 1.40
729 772 6.463360 TGGCAGGAAAAGGAACATTATTTTC 58.537 36.000 0.00 0.00 40.54 2.29
779 822 1.063327 CGTCGCTGGTGTTTTTGCA 59.937 52.632 0.00 0.00 0.00 4.08
1137 1191 1.561769 CCACACACCCATGGCTAGGA 61.562 60.000 6.09 0.00 0.00 2.94
1719 1774 7.708752 CAGTTTTATGCTTAGAAACCAAACCAA 59.291 33.333 10.75 0.00 34.63 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.225538 ACAAACATCTAGAACAGTGAACTTGAG 59.774 37.037 0.00 0.57 0.00 3.02
39 40 9.950680 AAAAATACACACAAACATCTAGAACAG 57.049 29.630 0.00 0.00 0.00 3.16
62 63 5.872070 AGTTTTTGATTGCTTCACGGAAAAA 59.128 32.000 0.00 0.00 32.84 1.94
63 64 5.290643 CAGTTTTTGATTGCTTCACGGAAAA 59.709 36.000 0.00 0.00 32.84 2.29
64 65 4.803088 CAGTTTTTGATTGCTTCACGGAAA 59.197 37.500 0.00 0.00 32.84 3.13
65 66 4.358851 CAGTTTTTGATTGCTTCACGGAA 58.641 39.130 0.00 0.00 32.84 4.30
66 67 3.795150 GCAGTTTTTGATTGCTTCACGGA 60.795 43.478 0.00 0.00 37.93 4.69
86 98 2.813754 GTGTCAGTAAAGGATGCTTGCA 59.186 45.455 0.00 0.00 0.00 4.08
121 133 7.223582 CACACTTGCATTTAAAACATGTAACCA 59.776 33.333 0.00 0.00 0.00 3.67
134 146 2.360483 CACCCACACACACTTGCATTTA 59.640 45.455 0.00 0.00 0.00 1.40
147 159 1.073199 CTTCCACCCTCACCCACAC 59.927 63.158 0.00 0.00 0.00 3.82
289 327 2.165641 TCCGTCTGGACACATGACATAC 59.834 50.000 0.00 0.00 40.17 2.39
302 340 6.743575 AAAGAAAAAGTATGATCCGTCTGG 57.256 37.500 0.00 0.00 0.00 3.86
303 341 8.289618 TGAAAAAGAAAAAGTATGATCCGTCTG 58.710 33.333 0.00 0.00 0.00 3.51
304 342 8.391075 TGAAAAAGAAAAAGTATGATCCGTCT 57.609 30.769 0.00 0.00 0.00 4.18
305 343 9.626045 ATTGAAAAAGAAAAAGTATGATCCGTC 57.374 29.630 0.00 0.00 0.00 4.79
306 344 9.410556 CATTGAAAAAGAAAAAGTATGATCCGT 57.589 29.630 0.00 0.00 0.00 4.69
307 345 8.375465 GCATTGAAAAAGAAAAAGTATGATCCG 58.625 33.333 0.00 0.00 0.00 4.18
308 346 9.206870 TGCATTGAAAAAGAAAAAGTATGATCC 57.793 29.630 0.00 0.00 0.00 3.36
314 352 8.825745 GGTGAATGCATTGAAAAAGAAAAAGTA 58.174 29.630 18.59 0.00 0.00 2.24
315 353 7.336427 TGGTGAATGCATTGAAAAAGAAAAAGT 59.664 29.630 18.59 0.00 0.00 2.66
316 354 7.695820 TGGTGAATGCATTGAAAAAGAAAAAG 58.304 30.769 18.59 0.00 0.00 2.27
317 355 7.621428 TGGTGAATGCATTGAAAAAGAAAAA 57.379 28.000 18.59 0.00 0.00 1.94
318 356 7.716123 AGATGGTGAATGCATTGAAAAAGAAAA 59.284 29.630 18.59 0.00 0.00 2.29
319 357 7.218614 AGATGGTGAATGCATTGAAAAAGAAA 58.781 30.769 18.59 0.00 0.00 2.52
320 358 6.761312 AGATGGTGAATGCATTGAAAAAGAA 58.239 32.000 18.59 0.00 0.00 2.52
321 359 6.349243 AGATGGTGAATGCATTGAAAAAGA 57.651 33.333 18.59 0.00 0.00 2.52
322 360 5.579511 GGAGATGGTGAATGCATTGAAAAAG 59.420 40.000 18.59 0.00 0.00 2.27
323 361 5.011840 TGGAGATGGTGAATGCATTGAAAAA 59.988 36.000 18.59 0.00 0.00 1.94
324 362 4.527427 TGGAGATGGTGAATGCATTGAAAA 59.473 37.500 18.59 0.00 0.00 2.29
325 363 4.087907 TGGAGATGGTGAATGCATTGAAA 58.912 39.130 18.59 0.30 0.00 2.69
326 364 3.699413 TGGAGATGGTGAATGCATTGAA 58.301 40.909 18.59 1.50 0.00 2.69
327 365 3.369242 TGGAGATGGTGAATGCATTGA 57.631 42.857 18.59 5.30 0.00 2.57
328 366 4.459390 TTTGGAGATGGTGAATGCATTG 57.541 40.909 18.59 0.00 0.00 2.82
329 367 5.188163 TCAATTTGGAGATGGTGAATGCATT 59.812 36.000 12.83 12.83 0.00 3.56
330 368 4.712829 TCAATTTGGAGATGGTGAATGCAT 59.287 37.500 0.00 0.00 0.00 3.96
331 369 4.082081 GTCAATTTGGAGATGGTGAATGCA 60.082 41.667 0.00 0.00 0.00 3.96
332 370 4.082081 TGTCAATTTGGAGATGGTGAATGC 60.082 41.667 0.00 0.00 0.00 3.56
333 371 5.648178 TGTCAATTTGGAGATGGTGAATG 57.352 39.130 0.00 0.00 0.00 2.67
334 372 6.268387 ACTTTGTCAATTTGGAGATGGTGAAT 59.732 34.615 0.00 0.00 0.00 2.57
335 373 5.598005 ACTTTGTCAATTTGGAGATGGTGAA 59.402 36.000 0.00 0.00 0.00 3.18
336 374 5.139727 ACTTTGTCAATTTGGAGATGGTGA 58.860 37.500 0.00 0.00 0.00 4.02
337 375 5.009911 TGACTTTGTCAATTTGGAGATGGTG 59.990 40.000 0.00 0.00 39.78 4.17
338 376 5.010012 GTGACTTTGTCAATTTGGAGATGGT 59.990 40.000 1.73 0.00 44.49 3.55
339 377 5.242393 AGTGACTTTGTCAATTTGGAGATGG 59.758 40.000 1.73 0.00 44.49 3.51
340 378 6.016860 TCAGTGACTTTGTCAATTTGGAGATG 60.017 38.462 1.73 0.00 44.49 2.90
341 379 6.016777 GTCAGTGACTTTGTCAATTTGGAGAT 60.017 38.462 16.26 0.00 44.49 2.75
342 380 5.296780 GTCAGTGACTTTGTCAATTTGGAGA 59.703 40.000 16.26 0.00 44.49 3.71
343 381 5.514279 GTCAGTGACTTTGTCAATTTGGAG 58.486 41.667 16.26 0.00 44.49 3.86
344 382 4.035091 CGTCAGTGACTTTGTCAATTTGGA 59.965 41.667 20.64 0.00 44.49 3.53
345 383 4.201910 ACGTCAGTGACTTTGTCAATTTGG 60.202 41.667 20.64 3.38 44.49 3.28
346 384 4.908736 ACGTCAGTGACTTTGTCAATTTG 58.091 39.130 20.64 3.57 44.49 2.32
347 385 6.671614 TTACGTCAGTGACTTTGTCAATTT 57.328 33.333 20.64 0.00 44.49 1.82
348 386 6.861065 ATTACGTCAGTGACTTTGTCAATT 57.139 33.333 20.64 0.00 44.49 2.32
349 387 6.861065 AATTACGTCAGTGACTTTGTCAAT 57.139 33.333 20.64 5.80 44.49 2.57
350 388 7.654116 TCATAATTACGTCAGTGACTTTGTCAA 59.346 33.333 20.64 3.66 44.49 3.18
351 389 7.115805 GTCATAATTACGTCAGTGACTTTGTCA 59.884 37.037 20.64 4.17 40.50 3.58
352 390 7.115805 TGTCATAATTACGTCAGTGACTTTGTC 59.884 37.037 20.64 5.44 37.46 3.18
353 391 6.926826 TGTCATAATTACGTCAGTGACTTTGT 59.073 34.615 20.64 13.51 37.46 2.83
354 392 7.346208 TGTCATAATTACGTCAGTGACTTTG 57.654 36.000 20.64 8.27 37.46 2.77
355 393 7.956420 TTGTCATAATTACGTCAGTGACTTT 57.044 32.000 20.64 10.17 37.46 2.66
356 394 7.956420 TTTGTCATAATTACGTCAGTGACTT 57.044 32.000 20.64 14.26 37.46 3.01
357 395 7.956420 TTTTGTCATAATTACGTCAGTGACT 57.044 32.000 20.64 10.46 37.46 3.41
397 435 6.745116 TCTCTTCTGATTGTGTAAAACTCGA 58.255 36.000 0.00 0.00 0.00 4.04
515 554 4.155709 TCATGGGCAGAATTTGGTAAACA 58.844 39.130 0.00 0.00 0.00 2.83
516 555 4.799564 TCATGGGCAGAATTTGGTAAAC 57.200 40.909 0.00 0.00 0.00 2.01
644 684 4.046462 GCATCATTCCATGAAAATGGTCG 58.954 43.478 16.17 8.73 43.50 4.79
647 687 5.270893 TGAGCATCATTCCATGAAAATGG 57.729 39.130 16.17 0.00 42.56 3.16
672 712 3.932822 TCGTCGAAAATTCCATCCTTGA 58.067 40.909 0.00 0.00 0.00 3.02
684 724 1.216941 GCGGAGTGGTTCGTCGAAAA 61.217 55.000 9.70 0.00 0.00 2.29
688 728 4.052229 AGGCGGAGTGGTTCGTCG 62.052 66.667 0.00 0.00 36.00 5.12
734 777 4.294523 AAGCGATGCGTGGCTTAA 57.705 50.000 24.56 0.00 45.88 1.85
737 780 2.816958 CAGAAGCGATGCGTGGCT 60.817 61.111 9.94 9.94 41.53 4.75
738 781 3.869272 CCAGAAGCGATGCGTGGC 61.869 66.667 4.52 4.52 0.00 5.01
1137 1191 3.513225 CGAAGCCATGCCCGAAAT 58.487 55.556 0.00 0.00 0.00 2.17
1719 1774 7.399765 TCATGAAGAAATAAAATGGGTGGACAT 59.600 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.