Multiple sequence alignment - TraesCS5A01G275000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G275000 chr5A 100.000 3806 0 0 1 3806 484557762 484553957 0.000000e+00 7029.0
1 TraesCS5A01G275000 chr5A 100.000 63 0 0 2323 2385 484555379 484555317 2.400000e-22 117.0
2 TraesCS5A01G275000 chr5A 100.000 63 0 0 2384 2446 484555440 484555378 2.400000e-22 117.0
3 TraesCS5A01G275000 chr5B 94.932 1460 61 2 927 2385 460678451 460677004 0.000000e+00 2274.0
4 TraesCS5A01G275000 chr5B 86.907 886 45 29 23 876 460679300 460678454 0.000000e+00 928.0
5 TraesCS5A01G275000 chr5B 87.729 709 43 23 2384 3082 460677066 460676392 0.000000e+00 787.0
6 TraesCS5A01G275000 chr5B 74.762 420 103 1 3360 3776 487823251 487823670 6.490000e-43 185.0
7 TraesCS5A01G275000 chr5D 93.699 1460 50 8 927 2385 384070375 384068957 0.000000e+00 2148.0
8 TraesCS5A01G275000 chr5D 86.268 1420 113 41 2384 3795 384069019 384067674 0.000000e+00 1467.0
9 TraesCS5A01G275000 chr5D 89.064 887 50 20 1 876 384071228 384070378 0.000000e+00 1057.0
10 TraesCS5A01G275000 chr5D 72.973 296 56 16 3513 3795 457478766 457479050 8.760000e-12 82.4
11 TraesCS5A01G275000 chr1B 79.379 451 81 10 3351 3795 631236996 631236552 1.330000e-79 307.0
12 TraesCS5A01G275000 chr1B 75.584 471 82 16 3208 3670 664774764 664775209 6.450000e-48 202.0
13 TraesCS5A01G275000 chr1D 77.753 445 73 13 3264 3698 310166491 310166919 2.270000e-62 250.0
14 TraesCS5A01G275000 chr1A 77.804 419 71 11 3264 3673 389882279 389882684 4.910000e-59 239.0
15 TraesCS5A01G275000 chr3A 77.009 448 77 15 3264 3700 128512569 128512137 2.290000e-57 233.0
16 TraesCS5A01G275000 chr7D 94.872 39 2 0 885 923 27204442 27204480 1.140000e-05 62.1
17 TraesCS5A01G275000 chr6A 92.308 39 3 0 3097 3135 579498971 579499009 5.310000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G275000 chr5A 484553957 484557762 3805 True 2421.000000 7029 100.000 1 3806 3 chr5A.!!$R1 3805
1 TraesCS5A01G275000 chr5B 460676392 460679300 2908 True 1329.666667 2274 89.856 23 3082 3 chr5B.!!$R1 3059
2 TraesCS5A01G275000 chr5D 384067674 384071228 3554 True 1557.333333 2148 89.677 1 3795 3 chr5D.!!$R1 3794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.830023 TCTGATCCGTGTGTGGGTGA 60.830 55.000 0.0 0.0 0.00 4.02 F
813 846 1.142965 GCACGTTTTGGGGCACTTT 59.857 52.632 0.0 0.0 0.00 2.66 F
2220 2254 0.112995 AGGCCCATGAACTTGCTTCA 59.887 50.000 0.0 0.0 43.28 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1001 1035 0.178906 TGGTCCATCACCTCTGTCCA 60.179 55.0 0.0 0.0 46.98 4.02 R
2726 2765 0.035458 CTCATGGTAATCTCCCCCGC 59.965 60.0 0.0 0.0 0.00 6.13 R
3732 3777 0.183492 TCAAGGGTTGACTGCTGCTT 59.817 50.0 0.0 0.0 34.08 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 0.830023 TCTGATCCGTGTGTGGGTGA 60.830 55.000 0.00 0.00 0.00 4.02
142 143 1.303317 GGGTGAATCTTGGCACGGT 60.303 57.895 0.00 0.00 35.91 4.83
240 266 5.010112 TCGTTTGCTTTCATCCACCAAATTA 59.990 36.000 0.00 0.00 0.00 1.40
360 392 3.572642 TGTAGTCTTCTCCTGTTGGTGA 58.427 45.455 0.00 0.00 34.42 4.02
368 400 5.958380 TCTTCTCCTGTTGGTGAGTGTATAT 59.042 40.000 0.00 0.00 37.20 0.86
369 401 7.068348 GTCTTCTCCTGTTGGTGAGTGTATATA 59.932 40.741 0.00 0.00 37.20 0.86
370 402 7.618117 TCTTCTCCTGTTGGTGAGTGTATATAA 59.382 37.037 0.00 0.00 37.20 0.98
372 404 6.097839 TCTCCTGTTGGTGAGTGTATATAACC 59.902 42.308 0.00 0.00 32.66 2.85
373 405 5.962031 TCCTGTTGGTGAGTGTATATAACCT 59.038 40.000 2.94 0.00 34.23 3.50
385 417 8.624367 AGTGTATATAACCTAGTAGCACTCAG 57.376 38.462 0.00 0.00 30.01 3.35
466 499 4.505191 TGTGTCTGCTTTGTTCGTTAGTAC 59.495 41.667 0.00 0.00 0.00 2.73
467 500 4.743644 GTGTCTGCTTTGTTCGTTAGTACT 59.256 41.667 0.00 0.00 0.00 2.73
494 527 2.872245 TGCTTGTGCACTACTTTGTCTC 59.128 45.455 19.41 0.00 45.31 3.36
506 539 8.356657 GCACTACTTTGTCTCTCATATACAGAT 58.643 37.037 0.00 0.00 0.00 2.90
519 552 9.196552 TCTCATATACAGATGACAATTTTAGCG 57.803 33.333 0.00 0.00 32.39 4.26
530 563 3.892588 ACAATTTTAGCGAAGGGGTTTCA 59.107 39.130 0.00 0.00 35.43 2.69
560 593 1.202580 GCATATTCCTCTGTCTGCCGT 60.203 52.381 0.00 0.00 0.00 5.68
570 603 2.037121 TCTGTCTGCCGTTGATCTGAAA 59.963 45.455 0.00 0.00 0.00 2.69
571 604 2.143122 TGTCTGCCGTTGATCTGAAAC 58.857 47.619 0.00 0.00 0.00 2.78
572 605 2.143122 GTCTGCCGTTGATCTGAAACA 58.857 47.619 0.00 0.00 0.00 2.83
573 606 2.744202 GTCTGCCGTTGATCTGAAACAT 59.256 45.455 0.00 0.00 0.00 2.71
652 685 6.768483 TCTGTGGAGAATATTGTGTTTCTCA 58.232 36.000 13.02 0.00 46.26 3.27
743 776 6.151144 GGTACATTGGAATTTAGCAGTGAGTT 59.849 38.462 0.00 0.00 0.00 3.01
772 805 8.478066 TGTATTACTACTCATGAGAAGCACAAT 58.522 33.333 29.27 18.93 0.00 2.71
804 837 4.327357 TGGTGTTTGTTTATGCACGTTTTG 59.673 37.500 0.00 0.00 33.09 2.44
813 846 1.142965 GCACGTTTTGGGGCACTTT 59.857 52.632 0.00 0.00 0.00 2.66
818 851 2.295070 ACGTTTTGGGGCACTTTATCAC 59.705 45.455 0.00 0.00 0.00 3.06
858 891 9.617975 CTGGTCTTTAAAATCATTCTCTTGTTC 57.382 33.333 0.00 0.00 0.00 3.18
861 894 9.965824 GTCTTTAAAATCATTCTCTTGTTCCAA 57.034 29.630 0.00 0.00 0.00 3.53
868 901 9.918630 AAATCATTCTCTTGTTCCAAAACTATG 57.081 29.630 0.00 0.00 36.30 2.23
871 904 6.633500 TTCTCTTGTTCCAAAACTATGTGG 57.367 37.500 0.00 0.00 36.30 4.17
876 909 8.472007 TCTTGTTCCAAAACTATGTGGTTATT 57.528 30.769 0.00 0.00 36.30 1.40
877 910 9.575868 TCTTGTTCCAAAACTATGTGGTTATTA 57.424 29.630 0.00 0.00 36.30 0.98
878 911 9.620660 CTTGTTCCAAAACTATGTGGTTATTAC 57.379 33.333 0.00 0.00 36.30 1.89
879 912 8.927675 TGTTCCAAAACTATGTGGTTATTACT 57.072 30.769 0.00 0.00 36.30 2.24
880 913 9.005777 TGTTCCAAAACTATGTGGTTATTACTC 57.994 33.333 0.00 0.00 36.30 2.59
881 914 8.456471 GTTCCAAAACTATGTGGTTATTACTCC 58.544 37.037 0.00 0.00 36.23 3.85
882 915 7.114095 TCCAAAACTATGTGGTTATTACTCCC 58.886 38.462 0.00 0.00 36.23 4.30
883 916 6.887545 CCAAAACTATGTGGTTATTACTCCCA 59.112 38.462 0.00 0.00 0.00 4.37
884 917 7.559897 CCAAAACTATGTGGTTATTACTCCCAT 59.440 37.037 0.00 0.00 0.00 4.00
885 918 8.966868 CAAAACTATGTGGTTATTACTCCCATT 58.033 33.333 0.00 0.00 0.00 3.16
886 919 8.519799 AAACTATGTGGTTATTACTCCCATTG 57.480 34.615 0.00 0.00 0.00 2.82
887 920 7.446106 ACTATGTGGTTATTACTCCCATTGA 57.554 36.000 0.00 0.00 0.00 2.57
888 921 7.867921 ACTATGTGGTTATTACTCCCATTGAA 58.132 34.615 0.00 0.00 0.00 2.69
889 922 8.333235 ACTATGTGGTTATTACTCCCATTGAAA 58.667 33.333 0.00 0.00 0.00 2.69
890 923 9.354673 CTATGTGGTTATTACTCCCATTGAAAT 57.645 33.333 0.00 0.00 0.00 2.17
892 925 9.707957 ATGTGGTTATTACTCCCATTGAAATAA 57.292 29.630 0.00 0.00 0.00 1.40
893 926 9.535170 TGTGGTTATTACTCCCATTGAAATAAA 57.465 29.630 0.00 0.00 0.00 1.40
896 929 9.811995 GGTTATTACTCCCATTGAAATAAAACC 57.188 33.333 0.00 0.00 0.00 3.27
899 932 7.841282 TTACTCCCATTGAAATAAAACCACA 57.159 32.000 0.00 0.00 0.00 4.17
900 933 6.739331 ACTCCCATTGAAATAAAACCACAA 57.261 33.333 0.00 0.00 0.00 3.33
901 934 6.521162 ACTCCCATTGAAATAAAACCACAAC 58.479 36.000 0.00 0.00 0.00 3.32
902 935 6.098982 ACTCCCATTGAAATAAAACCACAACA 59.901 34.615 0.00 0.00 0.00 3.33
903 936 6.889198 TCCCATTGAAATAAAACCACAACAA 58.111 32.000 0.00 0.00 0.00 2.83
904 937 7.512992 TCCCATTGAAATAAAACCACAACAAT 58.487 30.769 0.00 0.00 0.00 2.71
905 938 7.995488 TCCCATTGAAATAAAACCACAACAATT 59.005 29.630 0.00 0.00 0.00 2.32
906 939 9.277783 CCCATTGAAATAAAACCACAACAATTA 57.722 29.630 0.00 0.00 0.00 1.40
916 949 8.925161 AAAACCACAACAATTATTATGGATCG 57.075 30.769 0.00 0.00 0.00 3.69
917 950 6.633500 ACCACAACAATTATTATGGATCGG 57.367 37.500 0.00 0.00 0.00 4.18
918 951 6.361433 ACCACAACAATTATTATGGATCGGA 58.639 36.000 0.00 0.00 0.00 4.55
919 952 6.486657 ACCACAACAATTATTATGGATCGGAG 59.513 38.462 0.00 0.00 0.00 4.63
920 953 6.072508 CCACAACAATTATTATGGATCGGAGG 60.073 42.308 0.00 0.00 0.00 4.30
921 954 6.003950 ACAACAATTATTATGGATCGGAGGG 58.996 40.000 0.00 0.00 0.00 4.30
922 955 6.183361 ACAACAATTATTATGGATCGGAGGGA 60.183 38.462 0.00 0.00 0.00 4.20
923 956 6.642733 ACAATTATTATGGATCGGAGGGAT 57.357 37.500 0.00 0.00 38.35 3.85
924 957 7.032598 ACAATTATTATGGATCGGAGGGATT 57.967 36.000 0.00 0.00 34.82 3.01
925 958 8.158025 ACAATTATTATGGATCGGAGGGATTA 57.842 34.615 0.00 0.00 34.82 1.75
933 966 5.403512 TGGATCGGAGGGATTAGTATTTCT 58.596 41.667 0.00 0.00 34.82 2.52
934 967 5.844516 TGGATCGGAGGGATTAGTATTTCTT 59.155 40.000 0.00 0.00 34.82 2.52
935 968 6.166982 GGATCGGAGGGATTAGTATTTCTTG 58.833 44.000 0.00 0.00 34.82 3.02
948 981 4.757149 AGTATTTCTTGTTGCTGGACTGAC 59.243 41.667 0.00 0.00 0.00 3.51
976 1010 7.535139 TGGAAACAGAAACACTTAGTCTTTTG 58.465 34.615 0.00 0.00 35.01 2.44
980 1014 7.462571 ACAGAAACACTTAGTCTTTTGGTTT 57.537 32.000 0.00 0.00 0.00 3.27
1001 1035 7.615365 TGGTTTTCTGTTTGATAGCCTTATGAT 59.385 33.333 0.00 0.00 30.65 2.45
1110 1144 4.627611 AATATCATGTGTCAGCAAGCAC 57.372 40.909 0.00 0.00 36.26 4.40
1173 1207 0.903942 TTGCAAGGAAATGGCCATCC 59.096 50.000 21.08 18.51 35.88 3.51
1328 1362 7.238710 TCCTACTATACCTGCAGTATGATTGA 58.761 38.462 13.81 0.00 41.89 2.57
1331 1365 9.363763 CTACTATACCTGCAGTATGATTGATTG 57.636 37.037 13.81 0.00 41.89 2.67
1348 1382 8.833493 TGATTGATTGCTTGTATCTTGTATCAG 58.167 33.333 0.00 0.00 0.00 2.90
1444 1478 6.147864 ACTGCATCTTGTAAACAACATTGT 57.852 33.333 0.00 0.00 44.72 2.71
1508 1542 6.916360 TGTCTGAAGAAGGGCAAATAATTT 57.084 33.333 0.00 0.00 0.00 1.82
1515 1549 7.872483 TGAAGAAGGGCAAATAATTTGTTTCTC 59.128 33.333 0.47 0.00 42.56 2.87
1710 1744 6.540189 GCTTGTTGGTCACACATATCTCTATT 59.460 38.462 0.00 0.00 33.98 1.73
1812 1846 6.655078 AAAATGTCAGTCCAAGCATAAAGT 57.345 33.333 0.00 0.00 0.00 2.66
1847 1881 6.209391 AGCTTCAGTGCCAACATATTTTAGTT 59.791 34.615 0.00 0.00 0.00 2.24
1896 1930 5.597182 AGATACTAGAACTAAATGTCGGGCA 59.403 40.000 0.00 0.00 0.00 5.36
1926 1960 8.818622 AATCATGTCATATATGGGAGAATTGG 57.181 34.615 12.78 0.00 0.00 3.16
1931 1965 6.125029 GTCATATATGGGAGAATTGGGATGG 58.875 44.000 12.78 0.00 0.00 3.51
1938 1972 4.105697 TGGGAGAATTGGGATGGTAATACC 59.894 45.833 1.71 1.71 37.29 2.73
1942 1976 6.043938 GGAGAATTGGGATGGTAATACCTGTA 59.956 42.308 11.16 0.00 37.72 2.74
2016 2050 0.252761 TGGAATTCTCGGCTGCATCA 59.747 50.000 5.23 0.00 0.00 3.07
2043 2077 6.254281 TGAAAGCTTGGAAAACTATGTAGC 57.746 37.500 0.00 0.00 0.00 3.58
2045 2079 3.939066 AGCTTGGAAAACTATGTAGCGT 58.061 40.909 0.00 0.00 32.68 5.07
2142 2176 7.733047 TGCTGATACCTCCCATATACTAAAAGA 59.267 37.037 0.00 0.00 0.00 2.52
2220 2254 0.112995 AGGCCCATGAACTTGCTTCA 59.887 50.000 0.00 0.00 43.28 3.02
2307 2341 2.362397 CCTAGCGCAAGAAGGAGATGTA 59.638 50.000 11.47 0.00 42.73 2.29
2346 2380 5.362556 TGTTTGTTAATTCTCAGAGCAGC 57.637 39.130 0.00 0.00 0.00 5.25
2350 2384 6.579666 TTGTTAATTCTCAGAGCAGCAAAT 57.420 33.333 0.00 0.00 0.00 2.32
2405 2439 8.621532 ACTTATGTTTGTTAATTCTCAGAGCA 57.378 30.769 0.00 0.00 0.00 4.26
2406 2440 8.725148 ACTTATGTTTGTTAATTCTCAGAGCAG 58.275 33.333 0.00 0.00 0.00 4.24
2407 2441 5.362556 TGTTTGTTAATTCTCAGAGCAGC 57.637 39.130 0.00 0.00 0.00 5.25
2408 2442 4.821260 TGTTTGTTAATTCTCAGAGCAGCA 59.179 37.500 0.00 0.00 0.00 4.41
2409 2443 5.299028 TGTTTGTTAATTCTCAGAGCAGCAA 59.701 36.000 0.00 0.00 0.00 3.91
2410 2444 6.183360 TGTTTGTTAATTCTCAGAGCAGCAAA 60.183 34.615 0.00 0.00 0.00 3.68
2411 2445 6.579666 TTGTTAATTCTCAGAGCAGCAAAT 57.420 33.333 0.00 0.00 0.00 2.32
2412 2446 7.686438 TTGTTAATTCTCAGAGCAGCAAATA 57.314 32.000 0.00 0.00 0.00 1.40
2413 2447 7.312657 TGTTAATTCTCAGAGCAGCAAATAG 57.687 36.000 0.00 0.00 0.00 1.73
2414 2448 7.105588 TGTTAATTCTCAGAGCAGCAAATAGA 58.894 34.615 0.00 0.00 0.00 1.98
2415 2449 7.607607 TGTTAATTCTCAGAGCAGCAAATAGAA 59.392 33.333 0.00 0.00 0.00 2.10
2416 2450 8.454106 GTTAATTCTCAGAGCAGCAAATAGAAA 58.546 33.333 0.00 0.00 0.00 2.52
2417 2451 6.680874 ATTCTCAGAGCAGCAAATAGAAAG 57.319 37.500 0.00 0.00 0.00 2.62
2418 2452 5.157940 TCTCAGAGCAGCAAATAGAAAGT 57.842 39.130 0.00 0.00 0.00 2.66
2419 2453 6.286240 TCTCAGAGCAGCAAATAGAAAGTA 57.714 37.500 0.00 0.00 0.00 2.24
2420 2454 6.882656 TCTCAGAGCAGCAAATAGAAAGTAT 58.117 36.000 0.00 0.00 0.00 2.12
2421 2455 8.011844 TCTCAGAGCAGCAAATAGAAAGTATA 57.988 34.615 0.00 0.00 0.00 1.47
2422 2456 8.646004 TCTCAGAGCAGCAAATAGAAAGTATAT 58.354 33.333 0.00 0.00 0.00 0.86
2423 2457 9.270640 CTCAGAGCAGCAAATAGAAAGTATATT 57.729 33.333 0.00 0.00 0.00 1.28
2424 2458 9.618890 TCAGAGCAGCAAATAGAAAGTATATTT 57.381 29.630 0.00 0.00 34.03 1.40
2425 2459 9.875675 CAGAGCAGCAAATAGAAAGTATATTTC 57.124 33.333 0.00 0.00 31.94 2.17
2426 2460 9.061435 AGAGCAGCAAATAGAAAGTATATTTCC 57.939 33.333 0.00 0.00 31.94 3.13
2427 2461 8.986929 AGCAGCAAATAGAAAGTATATTTCCT 57.013 30.769 0.00 0.00 31.94 3.36
2428 2462 9.061435 AGCAGCAAATAGAAAGTATATTTCCTC 57.939 33.333 0.00 0.00 31.94 3.71
2429 2463 8.012241 GCAGCAAATAGAAAGTATATTTCCTCG 58.988 37.037 0.00 0.00 31.94 4.63
2430 2464 9.261180 CAGCAAATAGAAAGTATATTTCCTCGA 57.739 33.333 0.00 0.00 31.94 4.04
2431 2465 9.832445 AGCAAATAGAAAGTATATTTCCTCGAA 57.168 29.630 0.00 0.00 31.94 3.71
2478 2512 5.183713 TGCCAGTAGAACATCCATTTCTTTG 59.816 40.000 0.00 0.00 34.99 2.77
2568 2607 8.630054 TCAATGCCTGGGTAAATATACATAAC 57.370 34.615 0.00 0.00 33.45 1.89
2569 2608 8.444783 TCAATGCCTGGGTAAATATACATAACT 58.555 33.333 0.00 0.00 33.45 2.24
2571 2610 8.863872 ATGCCTGGGTAAATATACATAACTTC 57.136 34.615 0.00 0.00 33.45 3.01
2572 2611 7.228590 TGCCTGGGTAAATATACATAACTTCC 58.771 38.462 0.00 0.00 33.45 3.46
2574 2613 7.673180 CCTGGGTAAATATACATAACTTCCGA 58.327 38.462 0.00 0.00 33.45 4.55
2575 2614 8.319146 CCTGGGTAAATATACATAACTTCCGAT 58.681 37.037 0.00 0.00 33.45 4.18
2576 2615 9.720769 CTGGGTAAATATACATAACTTCCGATT 57.279 33.333 0.00 0.00 33.45 3.34
2577 2616 9.496873 TGGGTAAATATACATAACTTCCGATTG 57.503 33.333 0.00 0.00 33.45 2.67
2578 2617 9.715121 GGGTAAATATACATAACTTCCGATTGA 57.285 33.333 0.00 0.00 33.45 2.57
2585 2624 6.683974 ACATAACTTCCGATTGAATCTTGG 57.316 37.500 3.43 0.00 31.06 3.61
2586 2625 5.590259 ACATAACTTCCGATTGAATCTTGGG 59.410 40.000 3.43 0.00 31.06 4.12
2587 2626 3.721087 ACTTCCGATTGAATCTTGGGT 57.279 42.857 3.43 0.00 31.06 4.51
2588 2627 4.837093 ACTTCCGATTGAATCTTGGGTA 57.163 40.909 3.43 0.00 31.06 3.69
2589 2628 5.373812 ACTTCCGATTGAATCTTGGGTAT 57.626 39.130 3.43 0.00 31.06 2.73
2590 2629 5.126067 ACTTCCGATTGAATCTTGGGTATG 58.874 41.667 3.43 0.00 31.06 2.39
2591 2630 3.476552 TCCGATTGAATCTTGGGTATGC 58.523 45.455 3.43 0.00 0.00 3.14
2592 2631 3.118075 TCCGATTGAATCTTGGGTATGCA 60.118 43.478 3.43 0.00 0.00 3.96
2593 2632 3.251729 CCGATTGAATCTTGGGTATGCAG 59.748 47.826 3.43 0.00 0.00 4.41
2594 2633 4.129380 CGATTGAATCTTGGGTATGCAGA 58.871 43.478 3.43 0.00 0.00 4.26
2595 2634 4.212847 CGATTGAATCTTGGGTATGCAGAG 59.787 45.833 3.43 0.00 0.00 3.35
2596 2635 4.574674 TTGAATCTTGGGTATGCAGAGT 57.425 40.909 0.00 0.00 0.00 3.24
2597 2636 5.692115 TTGAATCTTGGGTATGCAGAGTA 57.308 39.130 0.00 0.00 0.00 2.59
2598 2637 5.023533 TGAATCTTGGGTATGCAGAGTAC 57.976 43.478 0.00 0.00 0.00 2.73
2599 2638 4.469586 TGAATCTTGGGTATGCAGAGTACA 59.530 41.667 0.00 0.00 0.00 2.90
2600 2639 4.679373 ATCTTGGGTATGCAGAGTACAG 57.321 45.455 0.00 0.00 0.00 2.74
2601 2640 3.441101 TCTTGGGTATGCAGAGTACAGT 58.559 45.455 0.00 0.00 0.00 3.55
2602 2641 4.606210 TCTTGGGTATGCAGAGTACAGTA 58.394 43.478 0.00 0.00 0.00 2.74
2603 2642 4.401519 TCTTGGGTATGCAGAGTACAGTAC 59.598 45.833 2.05 2.05 0.00 2.73
2604 2643 3.977312 TGGGTATGCAGAGTACAGTACT 58.023 45.455 13.41 13.41 42.86 2.73
2605 2644 4.350245 TGGGTATGCAGAGTACAGTACTT 58.650 43.478 14.68 1.08 39.59 2.24
2606 2645 4.159693 TGGGTATGCAGAGTACAGTACTTG 59.840 45.833 14.68 14.31 39.59 3.16
2609 2648 3.303881 TGCAGAGTACAGTACTTGCTG 57.696 47.619 28.76 24.44 40.34 4.41
2632 2671 7.415989 GCTGATATGAGTGTTTCATGTTCCATT 60.416 37.037 0.00 0.00 46.01 3.16
2726 2765 1.787155 CGACTTCCGTGACTGTTTCAG 59.213 52.381 0.00 0.00 33.71 3.02
2732 2771 1.966451 GTGACTGTTTCAGCGGGGG 60.966 63.158 0.00 0.00 33.71 5.40
2754 2793 0.319900 ATTACCATGAGGCGCTAGCG 60.320 55.000 32.22 32.22 46.35 4.26
2825 2866 3.904136 GCACACAGCTGTTGTTCTTAT 57.096 42.857 18.94 0.00 38.16 1.73
2878 2919 4.020039 TGCTATACTTCCCCGAGTGAAAAA 60.020 41.667 0.00 0.00 0.00 1.94
2967 3012 7.698836 ATTTCAAGAACGCCAAAATATATGC 57.301 32.000 0.00 0.00 0.00 3.14
2986 3031 5.670149 ATGCGATTGTTTGATTGCAAAAA 57.330 30.435 1.71 0.00 46.48 1.94
2996 3041 6.200665 TGTTTGATTGCAAAAAGTGTATCTGC 59.799 34.615 1.71 0.00 44.91 4.26
3013 3058 5.757850 ATCTGCGTTCTTGAAAGTTCTTT 57.242 34.783 0.00 0.00 0.00 2.52
3014 3059 4.908736 TCTGCGTTCTTGAAAGTTCTTTG 58.091 39.130 2.38 0.00 0.00 2.77
3043 3088 6.240894 ACATCGGTTGGATTCAGCATAATAT 58.759 36.000 0.00 0.00 31.28 1.28
3082 3127 4.396357 TTGGTGATTGGTTCAGGGTATT 57.604 40.909 0.00 0.00 34.17 1.89
3085 3130 5.505780 TGGTGATTGGTTCAGGGTATTAAG 58.494 41.667 0.00 0.00 34.17 1.85
3102 3147 4.393693 GAGCATCTATGGCAGGGC 57.606 61.111 0.00 0.00 0.00 5.19
3129 3174 2.189521 CCCCCTCAAACGATCGGG 59.810 66.667 20.98 10.20 36.42 5.14
3130 3175 2.513897 CCCCTCAAACGATCGGGC 60.514 66.667 20.98 0.00 35.29 6.13
3131 3176 2.890474 CCCTCAAACGATCGGGCG 60.890 66.667 20.98 6.82 37.29 6.13
3132 3177 2.890474 CCTCAAACGATCGGGCGG 60.890 66.667 20.98 9.05 35.12 6.13
3133 3178 2.183300 CTCAAACGATCGGGCGGA 59.817 61.111 20.98 10.12 35.12 5.54
3134 3179 2.125832 TCAAACGATCGGGCGGAC 60.126 61.111 20.98 0.00 35.12 4.79
3135 3180 3.550992 CAAACGATCGGGCGGACG 61.551 66.667 20.98 12.70 35.12 4.79
3136 3181 4.060038 AAACGATCGGGCGGACGT 62.060 61.111 20.98 13.68 40.64 4.34
3137 3182 3.976902 AAACGATCGGGCGGACGTC 62.977 63.158 20.98 7.13 38.00 4.34
3140 3185 4.570663 GATCGGGCGGACGTCCTG 62.571 72.222 30.92 23.99 37.84 3.86
3147 3192 4.415332 CGGACGTCCTGGTCACGG 62.415 72.222 30.92 10.14 41.73 4.94
3186 3231 0.178992 CCAGAAGGGTGCCTCAAACA 60.179 55.000 0.00 0.00 30.89 2.83
3187 3232 0.954452 CAGAAGGGTGCCTCAAACAC 59.046 55.000 0.00 0.00 37.31 3.32
3193 3238 3.884774 TGCCTCAAACACCCGGCT 61.885 61.111 0.00 0.00 42.90 5.52
3210 3255 1.807886 CTTGACCGGTACCCTCTCG 59.192 63.158 7.34 0.00 0.00 4.04
3211 3256 2.280823 CTTGACCGGTACCCTCTCGC 62.281 65.000 7.34 0.00 0.00 5.03
3214 3259 1.673808 GACCGGTACCCTCTCGCATT 61.674 60.000 7.34 0.00 0.00 3.56
3219 3264 0.461961 GTACCCTCTCGCATTCAGCT 59.538 55.000 0.00 0.00 42.61 4.24
3220 3265 1.134670 GTACCCTCTCGCATTCAGCTT 60.135 52.381 0.00 0.00 42.61 3.74
3246 3291 0.701310 GGGGTGGATATGGGGAGGTT 60.701 60.000 0.00 0.00 0.00 3.50
3247 3292 1.231963 GGGTGGATATGGGGAGGTTT 58.768 55.000 0.00 0.00 0.00 3.27
3248 3293 1.133482 GGGTGGATATGGGGAGGTTTG 60.133 57.143 0.00 0.00 0.00 2.93
3249 3294 1.133482 GGTGGATATGGGGAGGTTTGG 60.133 57.143 0.00 0.00 0.00 3.28
3250 3295 1.569072 GTGGATATGGGGAGGTTTGGT 59.431 52.381 0.00 0.00 0.00 3.67
3251 3296 2.024369 GTGGATATGGGGAGGTTTGGTT 60.024 50.000 0.00 0.00 0.00 3.67
3253 3298 2.243736 GGATATGGGGAGGTTTGGTTCA 59.756 50.000 0.00 0.00 0.00 3.18
3256 3301 1.606601 GGGGAGGTTTGGTTCAGGC 60.607 63.158 0.00 0.00 0.00 4.85
3260 3305 4.038080 GGTTTGGTTCAGGCGCGG 62.038 66.667 8.83 0.00 0.00 6.46
3261 3306 4.038080 GTTTGGTTCAGGCGCGGG 62.038 66.667 8.83 0.00 0.00 6.13
3278 3323 2.890474 GCGCCACGTCGGATTGAT 60.890 61.111 0.00 0.00 36.56 2.57
3284 3329 1.809619 ACGTCGGATTGATGTGCGG 60.810 57.895 0.00 0.00 45.16 5.69
3288 3333 1.522355 CGGATTGATGTGCGGCTCT 60.522 57.895 0.00 0.00 0.00 4.09
3289 3334 1.493950 CGGATTGATGTGCGGCTCTC 61.494 60.000 0.00 0.00 0.00 3.20
3291 3336 0.179062 GATTGATGTGCGGCTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
3292 3337 0.463295 ATTGATGTGCGGCTCTCCTG 60.463 55.000 0.00 0.00 0.00 3.86
3304 3349 1.349357 GCTCTCCTGGGAAAACACTCT 59.651 52.381 0.00 0.00 0.00 3.24
3314 3359 2.031944 GGAAAACACTCTGAAACTCGGC 60.032 50.000 0.00 0.00 0.00 5.54
3317 3362 1.006102 CACTCTGAAACTCGGCGGT 60.006 57.895 7.21 0.19 0.00 5.68
3318 3363 0.242825 CACTCTGAAACTCGGCGGTA 59.757 55.000 7.21 0.00 0.00 4.02
3320 3365 0.242825 CTCTGAAACTCGGCGGTACA 59.757 55.000 7.21 7.45 0.00 2.90
3323 3368 1.868498 CTGAAACTCGGCGGTACAAAA 59.132 47.619 7.21 0.00 0.00 2.44
3326 3371 1.957668 AACTCGGCGGTACAAAACTT 58.042 45.000 7.21 0.00 0.00 2.66
3327 3372 2.818130 ACTCGGCGGTACAAAACTTA 57.182 45.000 7.21 0.00 0.00 2.24
3334 3379 4.259356 GGCGGTACAAAACTTATCTCCTT 58.741 43.478 0.00 0.00 0.00 3.36
3348 3393 1.032794 CTCCTTCGATGGACCGATGA 58.967 55.000 15.68 0.00 38.45 2.92
3349 3394 0.744874 TCCTTCGATGGACCGATGAC 59.255 55.000 15.68 0.00 38.45 3.06
3360 3405 3.585574 CGATGACGTCGCGTGTCG 61.586 66.667 22.35 13.83 44.33 4.35
3362 3407 4.771356 ATGACGTCGCGTGTCGGG 62.771 66.667 22.35 0.00 41.37 5.14
3391 3436 3.617735 GGCCCCTAGCTCGGCTAC 61.618 72.222 16.48 1.07 45.01 3.58
3394 3439 1.687297 GCCCCTAGCTCGGCTACTTT 61.687 60.000 11.23 0.00 42.21 2.66
3439 3484 4.599241 CCCTATACATCCACATTTCCTCCT 59.401 45.833 0.00 0.00 0.00 3.69
3442 3487 3.922171 ACATCCACATTTCCTCCTCTC 57.078 47.619 0.00 0.00 0.00 3.20
3448 3493 1.135960 CATTTCCTCCTCTCCCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
3450 3495 0.725133 TTTCCTCCTCTCCCCTCCAT 59.275 55.000 0.00 0.00 0.00 3.41
3451 3496 0.266152 TTCCTCCTCTCCCCTCCATC 59.734 60.000 0.00 0.00 0.00 3.51
3452 3497 1.532794 CCTCCTCTCCCCTCCATCG 60.533 68.421 0.00 0.00 0.00 3.84
3463 3508 0.609131 CCTCCATCGCCACCACTTTT 60.609 55.000 0.00 0.00 0.00 2.27
3464 3509 1.339631 CCTCCATCGCCACCACTTTTA 60.340 52.381 0.00 0.00 0.00 1.52
3468 3513 3.829601 TCCATCGCCACCACTTTTAAATT 59.170 39.130 0.00 0.00 0.00 1.82
3470 3515 3.019933 TCGCCACCACTTTTAAATTGC 57.980 42.857 0.00 0.00 0.00 3.56
3481 3526 4.339814 ACTTTTAAATTGCCGTCCAACTCA 59.660 37.500 0.00 0.00 35.99 3.41
3492 3537 3.315191 CCGTCCAACTCAACATTTCACTT 59.685 43.478 0.00 0.00 0.00 3.16
3497 3542 1.608590 ACTCAACATTTCACTTGCCGG 59.391 47.619 0.00 0.00 0.00 6.13
3498 3543 1.608590 CTCAACATTTCACTTGCCGGT 59.391 47.619 1.90 0.00 0.00 5.28
3499 3544 2.028130 TCAACATTTCACTTGCCGGTT 58.972 42.857 1.90 0.00 0.00 4.44
3506 3551 1.965930 CACTTGCCGGTTGCTAGCA 60.966 57.895 14.93 14.93 45.30 3.49
3508 3553 1.672356 CTTGCCGGTTGCTAGCAGT 60.672 57.895 18.45 0.00 42.00 4.40
3510 3555 2.111999 TTGCCGGTTGCTAGCAGTCT 62.112 55.000 18.45 0.00 42.00 3.24
3517 3562 1.767654 TTGCTAGCAGTCTGCCACCA 61.768 55.000 21.32 12.31 46.52 4.17
3540 3585 0.625316 TCAAGTAGCCATGCCACCAT 59.375 50.000 0.00 0.00 0.00 3.55
3541 3586 0.742505 CAAGTAGCCATGCCACCATG 59.257 55.000 0.00 0.00 46.70 3.66
3554 3599 3.770040 CCATGCCGACGGGTCAGA 61.770 66.667 17.22 0.00 34.97 3.27
3573 3618 6.408206 GGTCAGAAGCTACCCTTATGTAACAT 60.408 42.308 0.00 0.00 42.12 2.71
3574 3619 6.702282 GTCAGAAGCTACCCTTATGTAACATC 59.298 42.308 0.00 0.00 42.12 3.06
3579 3624 4.038883 GCTACCCTTATGTAACATCGGAGT 59.961 45.833 0.00 0.00 0.00 3.85
3615 3660 2.930562 AGCAGACCCGGGAAAGCT 60.931 61.111 32.02 27.77 0.00 3.74
3616 3661 1.612442 AGCAGACCCGGGAAAGCTA 60.612 57.895 32.02 0.00 0.00 3.32
3661 3706 3.072468 TCCGGACGTGGTGGATCC 61.072 66.667 4.20 4.20 0.00 3.36
3662 3707 3.075005 CCGGACGTGGTGGATCCT 61.075 66.667 14.23 0.00 37.07 3.24
3668 3713 0.972983 ACGTGGTGGATCCTGAGGAG 60.973 60.000 14.23 2.88 34.05 3.69
3669 3714 1.680522 CGTGGTGGATCCTGAGGAGG 61.681 65.000 14.23 0.00 41.39 4.30
3676 3721 3.836617 TCCTGAGGAGGACGAGGA 58.163 61.111 0.00 0.00 44.13 3.71
3677 3722 1.610327 TCCTGAGGAGGACGAGGAG 59.390 63.158 0.00 0.00 44.13 3.69
3678 3723 1.454847 CCTGAGGAGGACGAGGAGG 60.455 68.421 0.00 0.00 42.93 4.30
3679 3724 1.610327 CTGAGGAGGACGAGGAGGA 59.390 63.158 0.00 0.00 0.00 3.71
3680 3725 0.750182 CTGAGGAGGACGAGGAGGAC 60.750 65.000 0.00 0.00 0.00 3.85
3681 3726 1.303615 GAGGAGGACGAGGAGGACA 59.696 63.158 0.00 0.00 0.00 4.02
3682 3727 0.106419 GAGGAGGACGAGGAGGACAT 60.106 60.000 0.00 0.00 0.00 3.06
3704 3749 2.716017 GCAGGAGGAGGACGAGGTG 61.716 68.421 0.00 0.00 0.00 4.00
3707 3752 1.075896 GGAGGAGGACGAGGTGGAT 60.076 63.158 0.00 0.00 0.00 3.41
3709 3754 2.022240 GAGGAGGACGAGGTGGATGC 62.022 65.000 0.00 0.00 0.00 3.91
3711 3756 2.362503 AGGACGAGGTGGATGCGA 60.363 61.111 0.00 0.00 0.00 5.10
3712 3757 2.105128 GGACGAGGTGGATGCGAG 59.895 66.667 0.00 0.00 0.00 5.03
3728 3773 3.214250 GAGGGCCGCGGATCTGTAG 62.214 68.421 33.48 0.00 0.00 2.74
3764 3809 1.203492 ACCCTTGATTCCCTCCAGTCT 60.203 52.381 0.00 0.00 0.00 3.24
3765 3810 2.045885 ACCCTTGATTCCCTCCAGTCTA 59.954 50.000 0.00 0.00 0.00 2.59
3771 3816 0.976073 TTCCCTCCAGTCTAAGGCGG 60.976 60.000 0.00 0.00 0.00 6.13
3795 3840 0.175073 GAAGGCCAACCGTCGTATCT 59.825 55.000 5.01 0.00 42.76 1.98
3796 3841 0.108329 AAGGCCAACCGTCGTATCTG 60.108 55.000 5.01 0.00 42.76 2.90
3797 3842 1.217244 GGCCAACCGTCGTATCTGT 59.783 57.895 0.00 0.00 0.00 3.41
3798 3843 0.390735 GGCCAACCGTCGTATCTGTT 60.391 55.000 0.00 0.00 0.00 3.16
3799 3844 0.719465 GCCAACCGTCGTATCTGTTG 59.281 55.000 4.83 4.83 38.20 3.33
3801 3846 2.357327 CAACCGTCGTATCTGTTGGA 57.643 50.000 4.08 0.00 35.58 3.53
3802 3847 2.679450 CAACCGTCGTATCTGTTGGAA 58.321 47.619 4.08 0.00 35.58 3.53
3803 3848 3.061322 CAACCGTCGTATCTGTTGGAAA 58.939 45.455 4.08 0.00 35.58 3.13
3804 3849 3.604875 ACCGTCGTATCTGTTGGAAAT 57.395 42.857 0.00 0.00 0.00 2.17
3805 3850 4.724074 ACCGTCGTATCTGTTGGAAATA 57.276 40.909 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.613777 AAGAAACCGAGCCCGAGATT 59.386 50.000 0.00 0.00 38.22 2.40
15 16 0.245539 TACAAGAAACCGAGCCCGAG 59.754 55.000 0.00 0.00 38.22 4.63
19 20 3.127030 CCAGAAATACAAGAAACCGAGCC 59.873 47.826 0.00 0.00 0.00 4.70
21 22 3.127030 GGCCAGAAATACAAGAAACCGAG 59.873 47.826 0.00 0.00 0.00 4.63
110 111 0.830023 TCACCCACACACGGATCAGA 60.830 55.000 0.00 0.00 0.00 3.27
121 122 0.888736 CGTGCCAAGATTCACCCACA 60.889 55.000 0.00 0.00 0.00 4.17
146 147 3.181499 ACTGATACTCTACAACCGAAGCG 60.181 47.826 0.00 0.00 0.00 4.68
160 161 6.314896 GCTTATCTTGCACAGAAACTGATACT 59.685 38.462 5.76 0.00 34.16 2.12
240 266 3.552875 CCATGATGAACTGGAGAGCATT 58.447 45.455 0.00 0.00 34.24 3.56
360 392 8.438373 TCTGAGTGCTACTAGGTTATATACACT 58.562 37.037 0.00 0.00 38.47 3.55
368 400 6.663953 AGAATTGTCTGAGTGCTACTAGGTTA 59.336 38.462 0.00 0.00 30.83 2.85
369 401 5.482175 AGAATTGTCTGAGTGCTACTAGGTT 59.518 40.000 0.00 0.00 30.83 3.50
370 402 5.020132 AGAATTGTCTGAGTGCTACTAGGT 58.980 41.667 0.00 0.00 30.83 3.08
385 417 4.315803 TCTCGAAAGGGTTCAGAATTGTC 58.684 43.478 0.00 0.00 32.89 3.18
482 515 9.634021 TCATCTGTATATGAGAGACAAAGTAGT 57.366 33.333 0.00 0.00 32.18 2.73
483 516 9.891828 GTCATCTGTATATGAGAGACAAAGTAG 57.108 37.037 0.00 0.00 36.57 2.57
494 527 9.196552 TCGCTAAAATTGTCATCTGTATATGAG 57.803 33.333 0.00 0.00 36.57 2.90
506 539 3.149005 ACCCCTTCGCTAAAATTGTCA 57.851 42.857 0.00 0.00 0.00 3.58
519 552 4.038642 TGCAATTAGTTGTGAAACCCCTTC 59.961 41.667 0.00 0.00 37.65 3.46
530 563 7.281774 CAGACAGAGGAATATGCAATTAGTTGT 59.718 37.037 0.00 0.00 37.65 3.32
560 593 7.431960 CACGAAAACAGAAATGTTTCAGATCAA 59.568 33.333 6.81 0.00 40.67 2.57
570 603 7.925993 TCTATTTGACACGAAAACAGAAATGT 58.074 30.769 0.00 0.00 0.00 2.71
571 604 8.781067 TTCTATTTGACACGAAAACAGAAATG 57.219 30.769 0.00 0.00 0.00 2.32
573 606 9.872757 GTATTCTATTTGACACGAAAACAGAAA 57.127 29.630 0.00 0.00 30.21 2.52
704 737 1.982660 TGTACCATCACCCGCAAAAA 58.017 45.000 0.00 0.00 0.00 1.94
705 738 2.208132 ATGTACCATCACCCGCAAAA 57.792 45.000 0.00 0.00 0.00 2.44
706 739 1.815613 CAATGTACCATCACCCGCAAA 59.184 47.619 0.00 0.00 0.00 3.68
707 740 1.458398 CAATGTACCATCACCCGCAA 58.542 50.000 0.00 0.00 0.00 4.85
708 741 0.393673 CCAATGTACCATCACCCGCA 60.394 55.000 0.00 0.00 0.00 5.69
709 742 0.107410 TCCAATGTACCATCACCCGC 60.107 55.000 0.00 0.00 0.00 6.13
710 743 2.411628 TTCCAATGTACCATCACCCG 57.588 50.000 0.00 0.00 0.00 5.28
711 744 5.221244 GCTAAATTCCAATGTACCATCACCC 60.221 44.000 0.00 0.00 0.00 4.61
712 745 5.359576 TGCTAAATTCCAATGTACCATCACC 59.640 40.000 0.00 0.00 0.00 4.02
713 746 6.095440 ACTGCTAAATTCCAATGTACCATCAC 59.905 38.462 0.00 0.00 0.00 3.06
714 747 6.095300 CACTGCTAAATTCCAATGTACCATCA 59.905 38.462 0.00 0.00 0.00 3.07
715 748 6.318648 TCACTGCTAAATTCCAATGTACCATC 59.681 38.462 0.00 0.00 0.00 3.51
725 758 9.461312 AATACAATAACTCACTGCTAAATTCCA 57.539 29.630 0.00 0.00 0.00 3.53
743 776 9.967346 GTGCTTCTCATGAGTAGTAATACAATA 57.033 33.333 24.91 0.15 0.00 1.90
772 805 5.163814 GCATAAACAAACACCAGCAACAAAA 60.164 36.000 0.00 0.00 0.00 2.44
804 837 4.273318 AGAGAATTGTGATAAAGTGCCCC 58.727 43.478 0.00 0.00 0.00 5.80
813 846 6.438741 AGACCAGAACAGAGAGAATTGTGATA 59.561 38.462 0.00 0.00 0.00 2.15
818 851 7.969536 TTAAAGACCAGAACAGAGAGAATTG 57.030 36.000 0.00 0.00 0.00 2.32
858 891 6.887545 TGGGAGTAATAACCACATAGTTTTGG 59.112 38.462 0.00 0.00 39.00 3.28
861 894 8.333235 TCAATGGGAGTAATAACCACATAGTTT 58.667 33.333 0.00 0.00 37.05 2.66
876 909 7.287927 TGTTGTGGTTTTATTTCAATGGGAGTA 59.712 33.333 0.00 0.00 0.00 2.59
877 910 6.098982 TGTTGTGGTTTTATTTCAATGGGAGT 59.901 34.615 0.00 0.00 0.00 3.85
878 911 6.520272 TGTTGTGGTTTTATTTCAATGGGAG 58.480 36.000 0.00 0.00 0.00 4.30
879 912 6.485830 TGTTGTGGTTTTATTTCAATGGGA 57.514 33.333 0.00 0.00 0.00 4.37
880 913 7.742556 ATTGTTGTGGTTTTATTTCAATGGG 57.257 32.000 0.00 0.00 0.00 4.00
891 924 7.978975 CCGATCCATAATAATTGTTGTGGTTTT 59.021 33.333 23.62 13.67 40.20 2.43
892 925 7.340743 TCCGATCCATAATAATTGTTGTGGTTT 59.659 33.333 23.62 15.55 40.20 3.27
893 926 6.831353 TCCGATCCATAATAATTGTTGTGGTT 59.169 34.615 23.62 18.06 40.20 3.67
894 927 6.361433 TCCGATCCATAATAATTGTTGTGGT 58.639 36.000 23.62 14.57 40.20 4.16
895 928 6.072508 CCTCCGATCCATAATAATTGTTGTGG 60.073 42.308 20.28 20.28 40.52 4.17
896 929 6.072508 CCCTCCGATCCATAATAATTGTTGTG 60.073 42.308 4.93 4.93 0.00 3.33
897 930 6.003950 CCCTCCGATCCATAATAATTGTTGT 58.996 40.000 0.00 0.00 0.00 3.32
898 931 6.237901 TCCCTCCGATCCATAATAATTGTTG 58.762 40.000 0.00 0.00 0.00 3.33
899 932 6.448369 TCCCTCCGATCCATAATAATTGTT 57.552 37.500 0.00 0.00 0.00 2.83
900 933 6.642733 ATCCCTCCGATCCATAATAATTGT 57.357 37.500 0.00 0.00 0.00 2.71
901 934 8.267894 ACTAATCCCTCCGATCCATAATAATTG 58.732 37.037 0.00 0.00 0.00 2.32
902 935 8.393959 ACTAATCCCTCCGATCCATAATAATT 57.606 34.615 0.00 0.00 0.00 1.40
903 936 7.996758 ACTAATCCCTCCGATCCATAATAAT 57.003 36.000 0.00 0.00 0.00 1.28
904 937 9.502035 AATACTAATCCCTCCGATCCATAATAA 57.498 33.333 0.00 0.00 0.00 1.40
905 938 9.502035 AAATACTAATCCCTCCGATCCATAATA 57.498 33.333 0.00 0.00 0.00 0.98
906 939 7.996758 AATACTAATCCCTCCGATCCATAAT 57.003 36.000 0.00 0.00 0.00 1.28
907 940 7.678598 AGAAATACTAATCCCTCCGATCCATAA 59.321 37.037 0.00 0.00 0.00 1.90
908 941 7.189794 AGAAATACTAATCCCTCCGATCCATA 58.810 38.462 0.00 0.00 0.00 2.74
909 942 6.026186 AGAAATACTAATCCCTCCGATCCAT 58.974 40.000 0.00 0.00 0.00 3.41
910 943 5.403512 AGAAATACTAATCCCTCCGATCCA 58.596 41.667 0.00 0.00 0.00 3.41
911 944 6.166982 CAAGAAATACTAATCCCTCCGATCC 58.833 44.000 0.00 0.00 0.00 3.36
912 945 6.760291 ACAAGAAATACTAATCCCTCCGATC 58.240 40.000 0.00 0.00 0.00 3.69
913 946 6.749036 ACAAGAAATACTAATCCCTCCGAT 57.251 37.500 0.00 0.00 0.00 4.18
914 947 6.346096 CAACAAGAAATACTAATCCCTCCGA 58.654 40.000 0.00 0.00 0.00 4.55
915 948 5.007724 GCAACAAGAAATACTAATCCCTCCG 59.992 44.000 0.00 0.00 0.00 4.63
916 949 6.038714 CAGCAACAAGAAATACTAATCCCTCC 59.961 42.308 0.00 0.00 0.00 4.30
917 950 6.038714 CCAGCAACAAGAAATACTAATCCCTC 59.961 42.308 0.00 0.00 0.00 4.30
918 951 5.888161 CCAGCAACAAGAAATACTAATCCCT 59.112 40.000 0.00 0.00 0.00 4.20
919 952 5.885912 TCCAGCAACAAGAAATACTAATCCC 59.114 40.000 0.00 0.00 0.00 3.85
920 953 6.599638 AGTCCAGCAACAAGAAATACTAATCC 59.400 38.462 0.00 0.00 0.00 3.01
921 954 7.334421 TCAGTCCAGCAACAAGAAATACTAATC 59.666 37.037 0.00 0.00 0.00 1.75
922 955 7.119846 GTCAGTCCAGCAACAAGAAATACTAAT 59.880 37.037 0.00 0.00 0.00 1.73
923 956 6.426937 GTCAGTCCAGCAACAAGAAATACTAA 59.573 38.462 0.00 0.00 0.00 2.24
924 957 5.932303 GTCAGTCCAGCAACAAGAAATACTA 59.068 40.000 0.00 0.00 0.00 1.82
925 958 4.757149 GTCAGTCCAGCAACAAGAAATACT 59.243 41.667 0.00 0.00 0.00 2.12
933 966 1.955778 CCATTGTCAGTCCAGCAACAA 59.044 47.619 0.00 0.00 36.19 2.83
934 967 1.142667 TCCATTGTCAGTCCAGCAACA 59.857 47.619 0.00 0.00 0.00 3.33
935 968 1.896220 TCCATTGTCAGTCCAGCAAC 58.104 50.000 0.00 0.00 0.00 4.17
948 981 7.264373 AGACTAAGTGTTTCTGTTTCCATTG 57.736 36.000 0.00 0.00 0.00 2.82
959 992 8.027189 ACAGAAAACCAAAAGACTAAGTGTTTC 58.973 33.333 0.00 0.00 28.89 2.78
968 1002 7.203218 GCTATCAAACAGAAAACCAAAAGACT 58.797 34.615 0.00 0.00 0.00 3.24
969 1003 6.420903 GGCTATCAAACAGAAAACCAAAAGAC 59.579 38.462 0.00 0.00 0.00 3.01
976 1010 7.391148 TCATAAGGCTATCAAACAGAAAACC 57.609 36.000 0.00 0.00 0.00 3.27
980 1014 6.767902 GTCCATCATAAGGCTATCAAACAGAA 59.232 38.462 0.00 0.00 0.00 3.02
1001 1035 0.178906 TGGTCCATCACCTCTGTCCA 60.179 55.000 0.00 0.00 46.98 4.02
1086 1120 4.142337 TGCTTGCTGACACATGATATTTGG 60.142 41.667 0.00 0.00 0.00 3.28
1110 1144 1.651240 CTCGGAACATGCTTGCCCAG 61.651 60.000 0.00 0.00 0.00 4.45
1173 1207 2.554272 CGTTTCCGGAAACCAGCG 59.446 61.111 40.57 30.24 45.78 5.18
1298 1332 4.868268 ACTGCAGGTATAGTAGGAAGTGA 58.132 43.478 19.93 0.00 0.00 3.41
1301 1335 7.710676 ATCATACTGCAGGTATAGTAGGAAG 57.289 40.000 19.93 0.37 41.62 3.46
1328 1362 7.611467 TCCAAACTGATACAAGATACAAGCAAT 59.389 33.333 0.00 0.00 0.00 3.56
1331 1365 6.985188 TCCAAACTGATACAAGATACAAGC 57.015 37.500 0.00 0.00 0.00 4.01
1386 1420 6.932356 AAATTGATACTGGATGCACTGTAG 57.068 37.500 0.00 0.00 0.00 2.74
1508 1542 7.772292 ACCTAGTGAGTATGTATACGAGAAACA 59.228 37.037 0.00 0.00 38.28 2.83
1710 1744 3.625764 ACACGCTCAAGCTGTTCTTTTAA 59.374 39.130 0.00 0.00 39.32 1.52
1737 1771 3.718434 TGAAGTATGCTGGATGGAGGAAT 59.282 43.478 0.00 0.00 0.00 3.01
1781 1815 5.458779 GCTTGGACTGACATTTTAAACACAC 59.541 40.000 0.00 0.00 0.00 3.82
1847 1881 4.941263 CGGAAAATGTTAATGACCTCCAGA 59.059 41.667 0.00 0.00 0.00 3.86
1926 1960 4.910458 AGCCATACAGGTATTACCATCC 57.090 45.455 15.19 0.00 41.95 3.51
1931 1965 9.555727 TTCTTCATAAAGCCATACAGGTATTAC 57.444 33.333 0.00 0.00 40.61 1.89
1942 1976 8.980596 TCCAATATTTGTTCTTCATAAAGCCAT 58.019 29.630 0.00 0.00 32.18 4.40
1965 1999 8.822805 AGTTTCCTTTCAACAGTATAGTATCCA 58.177 33.333 0.00 0.00 0.00 3.41
1973 2007 8.630037 CCAAGTAAAGTTTCCTTTCAACAGTAT 58.370 33.333 0.00 0.00 41.18 2.12
1995 2029 1.332997 GATGCAGCCGAGAATTCCAAG 59.667 52.381 0.65 0.00 0.00 3.61
2006 2040 1.973138 CTTTCAACTTGATGCAGCCG 58.027 50.000 0.00 0.00 0.00 5.52
2016 2050 7.112452 ACATAGTTTTCCAAGCTTTCAACTT 57.888 32.000 12.27 2.40 0.00 2.66
2142 2176 4.840716 ACAGAAGATGAGAAGGAGCAAT 57.159 40.909 0.00 0.00 0.00 3.56
2220 2254 8.467963 TGTCAATGACTGCAATCCATATATTT 57.532 30.769 14.97 0.00 33.15 1.40
2277 2311 4.378459 CCTTCTTGCGCTAGGTGTTTTAAG 60.378 45.833 18.64 12.02 0.00 1.85
2379 2413 9.719355 TGCTCTGAGAATTAACAAACATAAGTA 57.281 29.630 9.28 0.00 0.00 2.24
2380 2414 8.621532 TGCTCTGAGAATTAACAAACATAAGT 57.378 30.769 9.28 0.00 0.00 2.24
2381 2415 7.695618 GCTGCTCTGAGAATTAACAAACATAAG 59.304 37.037 9.28 0.00 0.00 1.73
2382 2416 7.174772 TGCTGCTCTGAGAATTAACAAACATAA 59.825 33.333 9.28 0.00 0.00 1.90
2383 2417 6.654582 TGCTGCTCTGAGAATTAACAAACATA 59.345 34.615 9.28 0.00 0.00 2.29
2384 2418 5.474532 TGCTGCTCTGAGAATTAACAAACAT 59.525 36.000 9.28 0.00 0.00 2.71
2385 2419 4.821260 TGCTGCTCTGAGAATTAACAAACA 59.179 37.500 9.28 0.00 0.00 2.83
2386 2420 5.362556 TGCTGCTCTGAGAATTAACAAAC 57.637 39.130 9.28 0.00 0.00 2.93
2387 2421 6.389830 TTTGCTGCTCTGAGAATTAACAAA 57.610 33.333 9.28 6.72 0.00 2.83
2388 2422 6.579666 ATTTGCTGCTCTGAGAATTAACAA 57.420 33.333 9.28 0.90 0.00 2.83
2389 2423 7.105588 TCTATTTGCTGCTCTGAGAATTAACA 58.894 34.615 9.28 0.00 0.00 2.41
2390 2424 7.545362 TCTATTTGCTGCTCTGAGAATTAAC 57.455 36.000 9.28 0.00 0.00 2.01
2391 2425 8.565896 TTTCTATTTGCTGCTCTGAGAATTAA 57.434 30.769 9.28 0.00 0.00 1.40
2392 2426 7.826252 ACTTTCTATTTGCTGCTCTGAGAATTA 59.174 33.333 9.28 0.00 0.00 1.40
2393 2427 6.658391 ACTTTCTATTTGCTGCTCTGAGAATT 59.342 34.615 9.28 0.00 0.00 2.17
2394 2428 6.179040 ACTTTCTATTTGCTGCTCTGAGAAT 58.821 36.000 9.28 1.46 0.00 2.40
2395 2429 5.555017 ACTTTCTATTTGCTGCTCTGAGAA 58.445 37.500 9.28 0.00 0.00 2.87
2396 2430 5.157940 ACTTTCTATTTGCTGCTCTGAGA 57.842 39.130 9.28 0.00 0.00 3.27
2397 2431 8.830201 ATATACTTTCTATTTGCTGCTCTGAG 57.170 34.615 0.00 0.00 0.00 3.35
2398 2432 9.618890 AAATATACTTTCTATTTGCTGCTCTGA 57.381 29.630 0.00 0.00 29.79 3.27
2399 2433 9.875675 GAAATATACTTTCTATTTGCTGCTCTG 57.124 33.333 0.00 0.00 30.81 3.35
2400 2434 9.061435 GGAAATATACTTTCTATTTGCTGCTCT 57.939 33.333 0.00 0.00 35.35 4.09
2401 2435 9.061435 AGGAAATATACTTTCTATTTGCTGCTC 57.939 33.333 0.00 0.00 42.22 4.26
2402 2436 8.986929 AGGAAATATACTTTCTATTTGCTGCT 57.013 30.769 0.00 0.00 42.22 4.24
2403 2437 8.012241 CGAGGAAATATACTTTCTATTTGCTGC 58.988 37.037 12.54 0.00 43.17 5.25
2404 2438 9.261180 TCGAGGAAATATACTTTCTATTTGCTG 57.739 33.333 12.54 7.17 43.17 4.41
2405 2439 9.832445 TTCGAGGAAATATACTTTCTATTTGCT 57.168 29.630 8.84 8.84 44.71 3.91
2435 2469 7.394816 ACTGGCACATGAAAGTAAGTATACTT 58.605 34.615 21.35 21.35 45.98 2.24
2436 2470 6.947464 ACTGGCACATGAAAGTAAGTATACT 58.053 36.000 0.00 0.00 40.53 2.12
2437 2471 8.195436 TCTACTGGCACATGAAAGTAAGTATAC 58.805 37.037 0.00 0.00 38.20 1.47
2457 2491 7.487189 GCATTCAAAGAAATGGATGTTCTACTG 59.513 37.037 0.00 0.00 38.37 2.74
2478 2512 6.761242 GGAATTTGGGGTATTTACTTGCATTC 59.239 38.462 0.00 0.00 0.00 2.67
2550 2589 9.720769 AATCGGAAGTTATGTATATTTACCCAG 57.279 33.333 0.00 0.00 0.00 4.45
2568 2607 4.023707 GCATACCCAAGATTCAATCGGAAG 60.024 45.833 0.00 0.00 39.30 3.46
2569 2608 3.882888 GCATACCCAAGATTCAATCGGAA 59.117 43.478 0.00 0.00 40.46 4.30
2571 2610 3.213506 TGCATACCCAAGATTCAATCGG 58.786 45.455 0.00 0.00 0.00 4.18
2572 2611 4.129380 TCTGCATACCCAAGATTCAATCG 58.871 43.478 0.00 0.00 0.00 3.34
2574 2613 5.121380 ACTCTGCATACCCAAGATTCAAT 57.879 39.130 0.00 0.00 0.00 2.57
2575 2614 4.574674 ACTCTGCATACCCAAGATTCAA 57.425 40.909 0.00 0.00 0.00 2.69
2576 2615 4.469586 TGTACTCTGCATACCCAAGATTCA 59.530 41.667 0.00 0.00 0.00 2.57
2577 2616 5.023533 TGTACTCTGCATACCCAAGATTC 57.976 43.478 0.00 0.00 0.00 2.52
2578 2617 4.471386 ACTGTACTCTGCATACCCAAGATT 59.529 41.667 0.00 0.00 0.00 2.40
2580 2619 3.441101 ACTGTACTCTGCATACCCAAGA 58.559 45.455 0.00 0.00 0.00 3.02
2581 2620 3.895232 ACTGTACTCTGCATACCCAAG 57.105 47.619 0.00 0.00 0.00 3.61
2582 2621 4.350245 AGTACTGTACTCTGCATACCCAA 58.650 43.478 14.53 0.00 32.47 4.12
2583 2622 3.977312 AGTACTGTACTCTGCATACCCA 58.023 45.455 14.53 0.00 32.47 4.51
2584 2623 4.683832 CAAGTACTGTACTCTGCATACCC 58.316 47.826 19.93 0.00 38.26 3.69
2585 2624 4.113354 GCAAGTACTGTACTCTGCATACC 58.887 47.826 29.25 13.83 39.90 2.73
2586 2625 4.800993 CAGCAAGTACTGTACTCTGCATAC 59.199 45.833 32.10 17.78 41.22 2.39
2587 2626 4.705023 TCAGCAAGTACTGTACTCTGCATA 59.295 41.667 32.10 24.16 41.22 3.14
2588 2627 3.511540 TCAGCAAGTACTGTACTCTGCAT 59.488 43.478 32.10 22.95 41.22 3.96
2589 2628 2.890945 TCAGCAAGTACTGTACTCTGCA 59.109 45.455 32.10 21.40 41.22 4.41
2590 2629 3.577649 TCAGCAAGTACTGTACTCTGC 57.422 47.619 28.19 28.19 40.17 4.26
2591 2630 7.032377 TCATATCAGCAAGTACTGTACTCTG 57.968 40.000 19.93 20.97 38.26 3.35
2592 2631 6.831353 ACTCATATCAGCAAGTACTGTACTCT 59.169 38.462 19.93 11.42 38.26 3.24
2593 2632 6.915300 CACTCATATCAGCAAGTACTGTACTC 59.085 42.308 19.93 9.39 38.26 2.59
2594 2633 6.378564 ACACTCATATCAGCAAGTACTGTACT 59.621 38.462 14.53 14.53 41.73 2.73
2595 2634 6.565234 ACACTCATATCAGCAAGTACTGTAC 58.435 40.000 9.93 9.93 38.84 2.90
2596 2635 6.775594 ACACTCATATCAGCAAGTACTGTA 57.224 37.500 0.00 0.00 38.84 2.74
2597 2636 5.667539 ACACTCATATCAGCAAGTACTGT 57.332 39.130 0.00 0.00 38.84 3.55
2598 2637 6.591448 TGAAACACTCATATCAGCAAGTACTG 59.409 38.462 0.00 0.00 39.12 2.74
2599 2638 6.701340 TGAAACACTCATATCAGCAAGTACT 58.299 36.000 0.00 0.00 0.00 2.73
2600 2639 6.968131 TGAAACACTCATATCAGCAAGTAC 57.032 37.500 0.00 0.00 0.00 2.73
2601 2640 7.105588 ACATGAAACACTCATATCAGCAAGTA 58.894 34.615 0.00 0.00 43.28 2.24
2602 2641 5.942236 ACATGAAACACTCATATCAGCAAGT 59.058 36.000 0.00 0.00 43.28 3.16
2603 2642 6.432607 ACATGAAACACTCATATCAGCAAG 57.567 37.500 0.00 0.00 43.28 4.01
2604 2643 6.127925 GGAACATGAAACACTCATATCAGCAA 60.128 38.462 0.00 0.00 43.28 3.91
2605 2644 5.355071 GGAACATGAAACACTCATATCAGCA 59.645 40.000 0.00 0.00 43.28 4.41
2606 2645 5.355071 TGGAACATGAAACACTCATATCAGC 59.645 40.000 0.00 0.00 43.28 4.26
2632 2671 4.163078 TGGAAATGGAAGGAAAAACTGCAA 59.837 37.500 0.00 0.00 0.00 4.08
2726 2765 0.035458 CTCATGGTAATCTCCCCCGC 59.965 60.000 0.00 0.00 0.00 6.13
2732 2771 2.928731 GCTAGCGCCTCATGGTAATCTC 60.929 54.545 2.29 0.00 35.27 2.75
2754 2793 1.073284 TGAAACCTAGACTTGGCACCC 59.927 52.381 2.53 0.00 0.00 4.61
2905 2946 7.285172 TCACCAAACATATAAATGTCATCCCAG 59.715 37.037 0.00 0.00 45.79 4.45
2967 3012 6.035070 ACACTTTTTGCAATCAAACAATCG 57.965 33.333 0.00 0.00 41.48 3.34
2986 3031 4.632153 ACTTTCAAGAACGCAGATACACT 58.368 39.130 0.00 0.00 0.00 3.55
2996 3041 7.021196 TGTTTCTCAAAGAACTTTCAAGAACG 58.979 34.615 15.21 0.00 33.26 3.95
3013 3058 4.002982 CTGAATCCAACCGATGTTTCTCA 58.997 43.478 0.00 0.00 30.42 3.27
3014 3059 3.181506 GCTGAATCCAACCGATGTTTCTC 60.182 47.826 0.00 0.00 30.42 2.87
3043 3088 3.245875 ACCAAACTAGCTCCTACTGGGTA 60.246 47.826 0.00 0.00 36.25 3.69
3082 3127 1.349026 GCCCTGCCATAGATGCTCTTA 59.651 52.381 0.00 0.00 0.00 2.10
3085 3130 1.670406 CGCCCTGCCATAGATGCTC 60.670 63.158 0.00 0.00 0.00 4.26
3128 3173 4.736896 GTGACCAGGACGTCCGCC 62.737 72.222 28.26 18.01 42.08 6.13
3130 3175 4.415332 CCGTGACCAGGACGTCCG 62.415 72.222 28.26 21.63 42.08 4.79
3131 3176 2.987547 TCCGTGACCAGGACGTCC 60.988 66.667 27.67 27.67 34.97 4.79
3168 3213 0.954452 GTGTTTGAGGCACCCTTCTG 59.046 55.000 0.00 0.00 31.76 3.02
3169 3214 3.421567 GTGTTTGAGGCACCCTTCT 57.578 52.632 0.00 0.00 31.76 2.85
3210 3255 3.026694 ACCCCAGATTTAAGCTGAATGC 58.973 45.455 12.11 0.00 43.29 3.56
3211 3256 3.382546 CCACCCCAGATTTAAGCTGAATG 59.617 47.826 12.11 6.57 35.39 2.67
3214 3259 2.274542 TCCACCCCAGATTTAAGCTGA 58.725 47.619 12.11 0.00 35.39 4.26
3219 3264 3.401002 CCCCATATCCACCCCAGATTTAA 59.599 47.826 0.00 0.00 0.00 1.52
3220 3265 2.993146 CCCCATATCCACCCCAGATTTA 59.007 50.000 0.00 0.00 0.00 1.40
3261 3306 2.890474 ATCAATCCGACGTGGCGC 60.890 61.111 0.00 0.00 37.80 6.53
3263 3308 1.715585 CACATCAATCCGACGTGGC 59.284 57.895 0.00 0.00 34.14 5.01
3271 3316 1.162800 GGAGAGCCGCACATCAATCC 61.163 60.000 0.00 0.00 0.00 3.01
3274 3319 1.078918 CAGGAGAGCCGCACATCAA 60.079 57.895 0.00 0.00 39.96 2.57
3284 3329 1.349357 AGAGTGTTTTCCCAGGAGAGC 59.651 52.381 0.00 0.00 0.00 4.09
3288 3333 3.202151 AGTTTCAGAGTGTTTTCCCAGGA 59.798 43.478 0.00 0.00 0.00 3.86
3289 3334 3.555966 AGTTTCAGAGTGTTTTCCCAGG 58.444 45.455 0.00 0.00 0.00 4.45
3291 3336 3.202906 CGAGTTTCAGAGTGTTTTCCCA 58.797 45.455 0.00 0.00 0.00 4.37
3292 3337 2.548480 CCGAGTTTCAGAGTGTTTTCCC 59.452 50.000 0.00 0.00 0.00 3.97
3295 3340 1.597663 CGCCGAGTTTCAGAGTGTTTT 59.402 47.619 0.00 0.00 0.00 2.43
3304 3349 1.598601 GTTTTGTACCGCCGAGTTTCA 59.401 47.619 0.00 0.00 0.00 2.69
3314 3359 5.404946 TCGAAGGAGATAAGTTTTGTACCG 58.595 41.667 0.00 0.00 0.00 4.02
3317 3362 7.039882 GTCCATCGAAGGAGATAAGTTTTGTA 58.960 38.462 10.19 0.00 38.64 2.41
3318 3363 5.875359 GTCCATCGAAGGAGATAAGTTTTGT 59.125 40.000 10.19 0.00 38.64 2.83
3320 3365 5.429130 GGTCCATCGAAGGAGATAAGTTTT 58.571 41.667 10.19 0.00 38.64 2.43
3323 3368 2.623889 CGGTCCATCGAAGGAGATAAGT 59.376 50.000 10.19 0.00 38.64 2.24
3326 3371 2.651382 TCGGTCCATCGAAGGAGATA 57.349 50.000 10.19 0.00 38.64 1.98
3327 3372 1.615883 CATCGGTCCATCGAAGGAGAT 59.384 52.381 10.19 7.59 42.69 2.75
3334 3379 1.725665 GACGTCATCGGTCCATCGA 59.274 57.895 11.55 0.00 43.61 3.59
3378 3423 1.000052 GCCTAAAGTAGCCGAGCTAGG 60.000 57.143 8.78 8.78 42.11 3.02
3391 3436 3.195698 GCCAGCGTCCGCCTAAAG 61.196 66.667 8.23 0.00 43.17 1.85
3399 3444 2.335011 GTTTTGGTGCCAGCGTCC 59.665 61.111 0.00 0.00 0.00 4.79
3401 3446 2.346284 TAGGGTTTTGGTGCCAGCGT 62.346 55.000 0.00 0.00 0.00 5.07
3439 3484 2.764128 GTGGCGATGGAGGGGAGA 60.764 66.667 0.00 0.00 0.00 3.71
3442 3487 4.489771 GTGGTGGCGATGGAGGGG 62.490 72.222 0.00 0.00 0.00 4.79
3448 3493 3.367630 GCAATTTAAAAGTGGTGGCGATG 59.632 43.478 0.00 0.00 0.00 3.84
3450 3495 2.288518 GGCAATTTAAAAGTGGTGGCGA 60.289 45.455 0.00 0.00 0.00 5.54
3451 3496 2.065512 GGCAATTTAAAAGTGGTGGCG 58.934 47.619 0.00 0.00 0.00 5.69
3452 3497 2.065512 CGGCAATTTAAAAGTGGTGGC 58.934 47.619 0.00 0.00 0.00 5.01
3463 3508 3.215151 TGTTGAGTTGGACGGCAATTTA 58.785 40.909 0.00 0.00 0.00 1.40
3464 3509 2.028130 TGTTGAGTTGGACGGCAATTT 58.972 42.857 0.00 0.00 0.00 1.82
3468 3513 1.606668 GAAATGTTGAGTTGGACGGCA 59.393 47.619 0.00 0.00 0.00 5.69
3470 3515 2.878406 AGTGAAATGTTGAGTTGGACGG 59.122 45.455 0.00 0.00 0.00 4.79
3481 3526 1.537990 GCAACCGGCAAGTGAAATGTT 60.538 47.619 0.00 0.00 43.97 2.71
3497 3542 2.166270 GTGGCAGACTGCTAGCAAC 58.834 57.895 25.92 15.30 44.28 4.17
3498 3543 4.701663 GTGGCAGACTGCTAGCAA 57.298 55.556 25.92 0.00 44.28 3.91
3506 3551 1.143684 ACTTGATTGTGGTGGCAGACT 59.856 47.619 0.00 0.00 0.00 3.24
3508 3553 2.875672 GCTACTTGATTGTGGTGGCAGA 60.876 50.000 0.00 0.00 37.39 4.26
3510 3555 1.533625 GCTACTTGATTGTGGTGGCA 58.466 50.000 0.00 0.00 37.39 4.92
3517 3562 2.094675 GTGGCATGGCTACTTGATTGT 58.905 47.619 21.08 0.00 37.08 2.71
3540 3585 4.373116 GCTTCTGACCCGTCGGCA 62.373 66.667 5.50 0.00 35.96 5.69
3541 3586 2.707849 TAGCTTCTGACCCGTCGGC 61.708 63.158 5.50 0.00 35.96 5.54
3554 3599 4.652421 TCCGATGTTACATAAGGGTAGCTT 59.348 41.667 15.82 0.00 0.00 3.74
3604 3649 1.313091 GGCTTTGTAGCTTTCCCGGG 61.313 60.000 16.85 16.85 46.90 5.73
3615 3660 4.783667 GGTGACGTGGGCTTTGTA 57.216 55.556 0.00 0.00 0.00 2.41
3661 3706 0.750182 GTCCTCCTCGTCCTCCTCAG 60.750 65.000 0.00 0.00 0.00 3.35
3662 3707 1.303615 GTCCTCCTCGTCCTCCTCA 59.696 63.158 0.00 0.00 0.00 3.86
3668 3713 2.022240 GCTCCATGTCCTCCTCGTCC 62.022 65.000 0.00 0.00 0.00 4.79
3669 3714 1.323271 TGCTCCATGTCCTCCTCGTC 61.323 60.000 0.00 0.00 0.00 4.20
3670 3715 1.305297 TGCTCCATGTCCTCCTCGT 60.305 57.895 0.00 0.00 0.00 4.18
3671 3716 1.440893 CTGCTCCATGTCCTCCTCG 59.559 63.158 0.00 0.00 0.00 4.63
3672 3717 0.689080 TCCTGCTCCATGTCCTCCTC 60.689 60.000 0.00 0.00 0.00 3.71
3673 3718 0.690411 CTCCTGCTCCATGTCCTCCT 60.690 60.000 0.00 0.00 0.00 3.69
3674 3719 1.694133 CCTCCTGCTCCATGTCCTCC 61.694 65.000 0.00 0.00 0.00 4.30
3675 3720 0.689080 TCCTCCTGCTCCATGTCCTC 60.689 60.000 0.00 0.00 0.00 3.71
3676 3721 0.690411 CTCCTCCTGCTCCATGTCCT 60.690 60.000 0.00 0.00 0.00 3.85
3677 3722 1.694133 CCTCCTCCTGCTCCATGTCC 61.694 65.000 0.00 0.00 0.00 4.02
3678 3723 0.689080 TCCTCCTCCTGCTCCATGTC 60.689 60.000 0.00 0.00 0.00 3.06
3679 3724 0.980231 GTCCTCCTCCTGCTCCATGT 60.980 60.000 0.00 0.00 0.00 3.21
3680 3725 1.828768 GTCCTCCTCCTGCTCCATG 59.171 63.158 0.00 0.00 0.00 3.66
3681 3726 1.760086 CGTCCTCCTCCTGCTCCAT 60.760 63.158 0.00 0.00 0.00 3.41
3682 3727 2.363018 CGTCCTCCTCCTGCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
3711 3756 3.227276 CTACAGATCCGCGGCCCT 61.227 66.667 23.51 16.98 0.00 5.19
3712 3757 4.301027 CCTACAGATCCGCGGCCC 62.301 72.222 23.51 14.70 0.00 5.80
3726 3771 0.670546 GTTGACTGCTGCTTCGCCTA 60.671 55.000 0.00 0.00 0.00 3.93
3728 3773 2.558313 GTTGACTGCTGCTTCGCC 59.442 61.111 0.00 0.00 0.00 5.54
3732 3777 0.183492 TCAAGGGTTGACTGCTGCTT 59.817 50.000 0.00 0.00 34.08 3.91
3738 3783 2.619074 GGAGGGAATCAAGGGTTGACTG 60.619 54.545 0.00 0.00 43.48 3.51
3764 3809 4.157120 GCCTTCGCCTCCGCCTTA 62.157 66.667 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.