Multiple sequence alignment - TraesCS5A01G274100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G274100 chr5A 100.000 4376 0 0 1 4376 482905566 482901191 0.000000e+00 8082.0
1 TraesCS5A01G274100 chr5A 88.785 535 54 5 3843 4376 325183527 325182998 0.000000e+00 651.0
2 TraesCS5A01G274100 chr5A 90.596 319 27 3 268 584 567885550 567885233 1.880000e-113 420.0
3 TraesCS5A01G274100 chr5D 94.966 1470 59 9 1964 3429 382489396 382487938 0.000000e+00 2290.0
4 TraesCS5A01G274100 chr5D 93.882 1324 46 8 643 1966 382490715 382489427 0.000000e+00 1964.0
5 TraesCS5A01G274100 chr5D 92.041 980 55 9 855 1834 382521094 382520138 0.000000e+00 1356.0
6 TraesCS5A01G274100 chr5D 92.593 270 17 3 3 271 382491741 382491474 6.870000e-103 385.0
7 TraesCS5A01G274100 chr5D 86.175 217 9 9 643 859 382535267 382535072 9.530000e-52 215.0
8 TraesCS5A01G274100 chr5B 96.126 1265 39 3 643 1907 458900513 458899259 0.000000e+00 2056.0
9 TraesCS5A01G274100 chr5B 96.797 1124 31 2 2291 3414 458897823 458896705 0.000000e+00 1871.0
10 TraesCS5A01G274100 chr5B 88.104 538 53 9 3841 4376 555252504 555253032 2.870000e-176 628.0
11 TraesCS5A01G274100 chr5B 88.550 524 53 5 3854 4376 594199106 594198589 2.870000e-176 628.0
12 TraesCS5A01G274100 chr5B 90.647 278 18 5 1 271 458901467 458901191 3.220000e-96 363.0
13 TraesCS5A01G274100 chr5B 81.602 337 27 17 1911 2226 458898145 458897823 3.380000e-61 246.0
14 TraesCS5A01G274100 chr6B 92.537 603 39 5 3776 4376 252815654 252816252 0.000000e+00 859.0
15 TraesCS5A01G274100 chr2A 89.944 537 46 6 3841 4376 105546296 105546825 0.000000e+00 686.0
16 TraesCS5A01G274100 chr2A 89.787 235 23 1 3538 3772 47350988 47351221 2.560000e-77 300.0
17 TraesCS5A01G274100 chr3A 89.907 535 48 5 3843 4376 651594842 651594313 0.000000e+00 684.0
18 TraesCS5A01G274100 chr3A 90.312 320 29 2 267 584 9301039 9301358 6.770000e-113 418.0
19 TraesCS5A01G274100 chr3A 89.407 236 25 0 3537 3772 298090999 298091234 9.200000e-77 298.0
20 TraesCS5A01G274100 chr4B 88.447 528 56 5 3849 4376 508548778 508548256 2.220000e-177 632.0
21 TraesCS5A01G274100 chr4A 88.911 514 50 6 3864 4376 651204905 651204398 1.030000e-175 627.0
22 TraesCS5A01G274100 chr4A 90.654 321 28 2 270 588 689623989 689623669 4.050000e-115 425.0
23 TraesCS5A01G274100 chr4A 89.831 236 24 0 3537 3772 725390655 725390420 1.980000e-78 303.0
24 TraesCS5A01G274100 chr4A 90.741 54 2 3 3068 3120 70311037 70311088 7.850000e-08 69.4
25 TraesCS5A01G274100 chr2B 88.484 521 52 7 3857 4376 739538243 739538756 1.340000e-174 623.0
26 TraesCS5A01G274100 chr2B 89.407 236 25 0 3538 3773 17833097 17832862 9.200000e-77 298.0
27 TraesCS5A01G274100 chr2D 91.277 321 26 2 268 586 36275112 36275432 1.870000e-118 436.0
28 TraesCS5A01G274100 chr2D 90.536 317 28 2 268 582 35028803 35029119 6.770000e-113 418.0
29 TraesCS5A01G274100 chr2D 90.506 316 28 2 267 580 522748527 522748842 2.430000e-112 416.0
30 TraesCS5A01G274100 chr1D 90.000 330 29 4 260 587 411194959 411194632 1.450000e-114 424.0
31 TraesCS5A01G274100 chr7A 90.343 321 29 2 270 588 35356695 35356375 1.880000e-113 420.0
32 TraesCS5A01G274100 chr6D 90.000 320 30 2 268 585 377567911 377567592 3.150000e-111 412.0
33 TraesCS5A01G274100 chr1B 89.583 240 22 3 3535 3773 580156314 580156551 7.110000e-78 302.0
34 TraesCS5A01G274100 chr1B 89.407 236 25 0 3538 3773 24633971 24633736 9.200000e-77 298.0
35 TraesCS5A01G274100 chr7D 88.889 243 25 2 3538 3778 140312532 140312774 9.200000e-77 298.0
36 TraesCS5A01G274100 chr7D 88.889 243 25 2 3538 3778 140313693 140313935 9.200000e-77 298.0
37 TraesCS5A01G274100 chr4D 89.451 237 24 1 3538 3774 64665082 64665317 9.200000e-77 298.0
38 TraesCS5A01G274100 chr4D 90.741 54 2 3 3068 3120 388927635 388927686 7.850000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G274100 chr5A 482901191 482905566 4375 True 8082.000000 8082 100.000000 1 4376 1 chr5A.!!$R2 4375
1 TraesCS5A01G274100 chr5A 325182998 325183527 529 True 651.000000 651 88.785000 3843 4376 1 chr5A.!!$R1 533
2 TraesCS5A01G274100 chr5D 382487938 382491741 3803 True 1546.333333 2290 93.813667 3 3429 3 chr5D.!!$R3 3426
3 TraesCS5A01G274100 chr5D 382520138 382521094 956 True 1356.000000 1356 92.041000 855 1834 1 chr5D.!!$R1 979
4 TraesCS5A01G274100 chr5B 458896705 458901467 4762 True 1134.000000 2056 91.293000 1 3414 4 chr5B.!!$R2 3413
5 TraesCS5A01G274100 chr5B 555252504 555253032 528 False 628.000000 628 88.104000 3841 4376 1 chr5B.!!$F1 535
6 TraesCS5A01G274100 chr5B 594198589 594199106 517 True 628.000000 628 88.550000 3854 4376 1 chr5B.!!$R1 522
7 TraesCS5A01G274100 chr6B 252815654 252816252 598 False 859.000000 859 92.537000 3776 4376 1 chr6B.!!$F1 600
8 TraesCS5A01G274100 chr2A 105546296 105546825 529 False 686.000000 686 89.944000 3841 4376 1 chr2A.!!$F2 535
9 TraesCS5A01G274100 chr3A 651594313 651594842 529 True 684.000000 684 89.907000 3843 4376 1 chr3A.!!$R1 533
10 TraesCS5A01G274100 chr4B 508548256 508548778 522 True 632.000000 632 88.447000 3849 4376 1 chr4B.!!$R1 527
11 TraesCS5A01G274100 chr4A 651204398 651204905 507 True 627.000000 627 88.911000 3864 4376 1 chr4A.!!$R1 512
12 TraesCS5A01G274100 chr2B 739538243 739538756 513 False 623.000000 623 88.484000 3857 4376 1 chr2B.!!$F1 519
13 TraesCS5A01G274100 chr7D 140312532 140313935 1403 False 298.000000 298 88.889000 3538 3778 2 chr7D.!!$F1 240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 402 0.179029 CCGACCACACCTTTTCACCT 60.179 55.0 0.0 0.0 0.0 4.00 F
1907 2663 0.032267 GGCTGCATCGGTACTAGTCC 59.968 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 4019 0.249120 CAACCATCCTGCACGGTAGA 59.751 55.0 2.68 0.0 31.12 2.59 R
3450 5369 0.179004 ATCGCAAACCACACCAAGGA 60.179 50.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.432933 CCAACAAGTGTAAATGCCAATGC 59.567 43.478 0.00 0.00 38.26 3.56
64 65 6.552725 TGCCCCAAAAGCATAATGATATAACA 59.447 34.615 0.00 0.00 34.69 2.41
68 69 9.467258 CCCAAAAGCATAATGATATAACACAAG 57.533 33.333 0.00 0.00 0.00 3.16
72 73 9.903682 AAAGCATAATGATATAACACAAGCATC 57.096 29.630 0.00 0.00 0.00 3.91
177 180 1.689813 ACCCACAATTTCCGAAAACCC 59.310 47.619 0.00 0.00 0.00 4.11
190 193 4.038642 TCCGAAAACCCTGAATCCAAAAAG 59.961 41.667 0.00 0.00 0.00 2.27
213 220 7.066307 AGTCATATTTCCCCCAAATTAATGC 57.934 36.000 0.00 0.00 36.09 3.56
223 230 4.102838 CCCCAAATTAATGCCCATGATGAA 59.897 41.667 0.00 0.00 0.00 2.57
235 242 5.657745 TGCCCATGATGAATCAGTACATTTT 59.342 36.000 0.00 0.00 40.64 1.82
258 266 3.055675 ACATGCCCAAAATCCATGAGTTG 60.056 43.478 6.83 0.00 38.84 3.16
272 280 5.391312 CATGAGTTGGAAAACCTTAAGGG 57.609 43.478 25.31 7.85 40.27 3.95
273 281 3.227614 TGAGTTGGAAAACCTTAAGGGC 58.772 45.455 25.31 11.22 40.27 5.19
274 282 2.561419 GAGTTGGAAAACCTTAAGGGCC 59.439 50.000 25.31 19.09 40.27 5.80
275 283 2.179204 AGTTGGAAAACCTTAAGGGCCT 59.821 45.455 25.31 0.00 40.27 5.19
276 284 2.299013 GTTGGAAAACCTTAAGGGCCTG 59.701 50.000 25.31 0.00 40.27 4.85
277 285 1.501604 TGGAAAACCTTAAGGGCCTGT 59.498 47.619 25.31 4.73 40.27 4.00
278 286 2.090999 TGGAAAACCTTAAGGGCCTGTT 60.091 45.455 25.31 3.52 40.27 3.16
279 287 2.969950 GGAAAACCTTAAGGGCCTGTTT 59.030 45.455 25.31 10.57 40.27 2.83
280 288 3.244078 GGAAAACCTTAAGGGCCTGTTTG 60.244 47.826 25.31 6.23 40.27 2.93
281 289 2.009681 AACCTTAAGGGCCTGTTTGG 57.990 50.000 25.31 10.22 40.27 3.28
282 290 0.857675 ACCTTAAGGGCCTGTTTGGT 59.142 50.000 25.31 10.93 40.27 3.67
283 291 1.219469 ACCTTAAGGGCCTGTTTGGTT 59.781 47.619 25.31 0.00 40.27 3.67
284 292 2.325484 CCTTAAGGGCCTGTTTGGTTT 58.675 47.619 14.25 0.00 38.35 3.27
285 293 2.299013 CCTTAAGGGCCTGTTTGGTTTC 59.701 50.000 14.25 0.00 38.35 2.78
286 294 2.757894 TAAGGGCCTGTTTGGTTTCA 57.242 45.000 6.92 0.00 38.35 2.69
287 295 1.872773 AAGGGCCTGTTTGGTTTCAA 58.127 45.000 6.92 0.00 38.35 2.69
288 296 2.101640 AGGGCCTGTTTGGTTTCAAT 57.898 45.000 4.50 0.00 38.35 2.57
289 297 3.252554 AGGGCCTGTTTGGTTTCAATA 57.747 42.857 4.50 0.00 38.35 1.90
290 298 3.582164 AGGGCCTGTTTGGTTTCAATAA 58.418 40.909 4.50 0.00 38.35 1.40
291 299 3.578282 AGGGCCTGTTTGGTTTCAATAAG 59.422 43.478 4.50 0.00 38.35 1.73
292 300 3.323691 GGGCCTGTTTGGTTTCAATAAGT 59.676 43.478 0.84 0.00 38.35 2.24
293 301 4.556233 GGCCTGTTTGGTTTCAATAAGTC 58.444 43.478 0.00 0.00 38.35 3.01
294 302 4.038642 GGCCTGTTTGGTTTCAATAAGTCA 59.961 41.667 0.00 0.00 38.35 3.41
295 303 5.222631 GCCTGTTTGGTTTCAATAAGTCAG 58.777 41.667 0.00 0.00 38.35 3.51
296 304 5.222631 CCTGTTTGGTTTCAATAAGTCAGC 58.777 41.667 0.00 0.00 32.28 4.26
297 305 5.010012 CCTGTTTGGTTTCAATAAGTCAGCT 59.990 40.000 0.00 0.00 32.28 4.24
298 306 5.830912 TGTTTGGTTTCAATAAGTCAGCTG 58.169 37.500 7.63 7.63 32.28 4.24
299 307 5.592282 TGTTTGGTTTCAATAAGTCAGCTGA 59.408 36.000 13.74 13.74 32.28 4.26
300 308 5.689383 TTGGTTTCAATAAGTCAGCTGAC 57.311 39.130 34.82 34.82 45.08 3.51
301 309 5.827797 TTTGGTTTCAATAAGTCAGCTGACT 59.172 36.000 37.93 37.93 43.62 3.41
352 360 6.930667 ACTTATAAGTCACGTTTGTTTGGT 57.069 33.333 12.50 0.00 32.86 3.67
353 361 7.324354 ACTTATAAGTCACGTTTGTTTGGTT 57.676 32.000 12.50 0.00 32.86 3.67
354 362 7.190871 ACTTATAAGTCACGTTTGTTTGGTTG 58.809 34.615 12.50 0.00 32.86 3.77
355 363 3.926821 AAGTCACGTTTGTTTGGTTGT 57.073 38.095 0.00 0.00 0.00 3.32
356 364 3.481112 AGTCACGTTTGTTTGGTTGTC 57.519 42.857 0.00 0.00 0.00 3.18
357 365 2.814919 AGTCACGTTTGTTTGGTTGTCA 59.185 40.909 0.00 0.00 0.00 3.58
358 366 2.912345 GTCACGTTTGTTTGGTTGTCAC 59.088 45.455 0.00 0.00 0.00 3.67
359 367 2.095161 TCACGTTTGTTTGGTTGTCACC 60.095 45.455 0.00 0.00 44.56 4.02
360 368 2.094957 CACGTTTGTTTGGTTGTCACCT 60.095 45.455 0.00 0.00 44.61 4.00
361 369 2.094957 ACGTTTGTTTGGTTGTCACCTG 60.095 45.455 0.00 0.00 44.61 4.00
362 370 2.162608 CGTTTGTTTGGTTGTCACCTGA 59.837 45.455 0.00 0.00 44.61 3.86
363 371 3.507786 GTTTGTTTGGTTGTCACCTGAC 58.492 45.455 0.00 0.00 44.61 3.51
364 372 2.799126 TGTTTGGTTGTCACCTGACT 57.201 45.000 6.97 0.00 44.61 3.41
365 373 3.080300 TGTTTGGTTGTCACCTGACTT 57.920 42.857 6.97 0.00 44.61 3.01
366 374 4.223556 TGTTTGGTTGTCACCTGACTTA 57.776 40.909 6.97 0.00 44.61 2.24
367 375 4.787551 TGTTTGGTTGTCACCTGACTTAT 58.212 39.130 6.97 0.00 44.61 1.73
368 376 5.931294 TGTTTGGTTGTCACCTGACTTATA 58.069 37.500 6.97 0.00 44.61 0.98
369 377 6.358178 TGTTTGGTTGTCACCTGACTTATAA 58.642 36.000 6.97 0.00 44.61 0.98
370 378 6.485313 TGTTTGGTTGTCACCTGACTTATAAG 59.515 38.462 11.05 11.05 44.61 1.73
371 379 5.818678 TGGTTGTCACCTGACTTATAAGT 57.181 39.130 18.05 18.05 44.61 2.24
372 380 5.790593 TGGTTGTCACCTGACTTATAAGTC 58.209 41.667 30.61 30.61 46.58 3.01
384 392 5.007385 ACTTATAAGTCATCCGACCACAC 57.993 43.478 12.50 0.00 43.73 3.82
385 393 2.981859 ATAAGTCATCCGACCACACC 57.018 50.000 0.00 0.00 43.73 4.16
386 394 1.933021 TAAGTCATCCGACCACACCT 58.067 50.000 0.00 0.00 43.73 4.00
387 395 1.056660 AAGTCATCCGACCACACCTT 58.943 50.000 0.00 0.00 43.73 3.50
388 396 1.056660 AGTCATCCGACCACACCTTT 58.943 50.000 0.00 0.00 43.73 3.11
389 397 1.420138 AGTCATCCGACCACACCTTTT 59.580 47.619 0.00 0.00 43.73 2.27
390 398 1.804748 GTCATCCGACCACACCTTTTC 59.195 52.381 0.00 0.00 36.02 2.29
391 399 1.418264 TCATCCGACCACACCTTTTCA 59.582 47.619 0.00 0.00 0.00 2.69
392 400 1.535462 CATCCGACCACACCTTTTCAC 59.465 52.381 0.00 0.00 0.00 3.18
393 401 0.179040 TCCGACCACACCTTTTCACC 60.179 55.000 0.00 0.00 0.00 4.02
394 402 0.179029 CCGACCACACCTTTTCACCT 60.179 55.000 0.00 0.00 0.00 4.00
395 403 1.675552 CGACCACACCTTTTCACCTT 58.324 50.000 0.00 0.00 0.00 3.50
396 404 1.333619 CGACCACACCTTTTCACCTTG 59.666 52.381 0.00 0.00 0.00 3.61
397 405 2.375146 GACCACACCTTTTCACCTTGT 58.625 47.619 0.00 0.00 0.00 3.16
398 406 2.758423 GACCACACCTTTTCACCTTGTT 59.242 45.455 0.00 0.00 0.00 2.83
399 407 3.169908 ACCACACCTTTTCACCTTGTTT 58.830 40.909 0.00 0.00 0.00 2.83
400 408 3.580895 ACCACACCTTTTCACCTTGTTTT 59.419 39.130 0.00 0.00 0.00 2.43
401 409 4.041075 ACCACACCTTTTCACCTTGTTTTT 59.959 37.500 0.00 0.00 0.00 1.94
422 430 6.844097 TTTTTATGTAAAGATGGTGGGACC 57.156 37.500 0.00 0.00 39.22 4.46
423 431 4.513406 TTATGTAAAGATGGTGGGACCC 57.487 45.455 2.45 2.45 37.50 4.46
424 432 1.748732 TGTAAAGATGGTGGGACCCA 58.251 50.000 9.95 9.95 37.50 4.51
434 442 3.215671 TGGGACCCACACAAAAAGG 57.784 52.632 9.95 0.00 0.00 3.11
439 447 3.215671 CCCACACAAAAAGGGGTGA 57.784 52.632 0.00 0.00 38.98 4.02
440 448 0.750249 CCCACACAAAAAGGGGTGAC 59.250 55.000 0.00 0.00 38.98 3.67
441 449 1.687996 CCCACACAAAAAGGGGTGACT 60.688 52.381 0.00 0.00 38.98 3.41
442 450 2.107366 CCACACAAAAAGGGGTGACTT 58.893 47.619 0.00 0.00 38.38 3.01
443 451 3.292460 CCACACAAAAAGGGGTGACTTA 58.708 45.455 0.00 0.00 38.38 2.24
444 452 3.895041 CCACACAAAAAGGGGTGACTTAT 59.105 43.478 0.00 0.00 38.38 1.73
445 453 5.074115 CCACACAAAAAGGGGTGACTTATA 58.926 41.667 0.00 0.00 38.38 0.98
446 454 5.536916 CCACACAAAAAGGGGTGACTTATAA 59.463 40.000 0.00 0.00 38.38 0.98
447 455 6.294508 CCACACAAAAAGGGGTGACTTATAAG 60.295 42.308 11.05 11.05 38.38 1.73
448 456 6.264518 CACACAAAAAGGGGTGACTTATAAGT 59.735 38.462 18.05 18.05 43.16 2.24
449 457 6.837048 ACACAAAAAGGGGTGACTTATAAGTT 59.163 34.615 18.96 3.63 39.88 2.66
450 458 7.343574 ACACAAAAAGGGGTGACTTATAAGTTT 59.656 33.333 18.96 5.93 39.88 2.66
451 459 8.201464 CACAAAAAGGGGTGACTTATAAGTTTT 58.799 33.333 18.96 11.32 39.88 2.43
452 460 9.423964 ACAAAAAGGGGTGACTTATAAGTTTTA 57.576 29.630 18.96 6.80 39.88 1.52
455 463 9.650714 AAAAGGGGTGACTTATAAGTTTTAAGT 57.349 29.630 18.96 15.86 41.41 2.24
456 464 9.650714 AAAGGGGTGACTTATAAGTTTTAAGTT 57.349 29.630 18.96 7.30 39.40 2.66
457 465 8.631480 AGGGGTGACTTATAAGTTTTAAGTTG 57.369 34.615 18.96 0.00 39.40 3.16
458 466 7.668469 AGGGGTGACTTATAAGTTTTAAGTTGG 59.332 37.037 18.96 0.00 39.40 3.77
459 467 7.094075 GGGGTGACTTATAAGTTTTAAGTTGGG 60.094 40.741 18.96 0.00 39.40 4.12
460 468 7.094075 GGGTGACTTATAAGTTTTAAGTTGGGG 60.094 40.741 18.96 0.00 39.40 4.96
461 469 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
462 470 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
463 471 7.449086 TGACTTATAAGTTTTAAGTTGGGGTGG 59.551 37.037 18.96 0.00 39.40 4.61
464 472 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
465 473 7.668469 ACTTATAAGTTTTAAGTTGGGGTGGAG 59.332 37.037 12.50 0.00 36.70 3.86
466 474 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
467 475 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
468 476 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
469 477 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
470 478 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
471 479 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
472 480 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
473 481 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
474 482 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
475 483 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
476 484 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
477 485 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
478 486 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
479 487 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
480 488 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
481 489 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
482 490 5.992217 GGGTGGAGCAACTTATGACTTATAG 59.008 44.000 0.00 0.00 0.00 1.31
483 491 5.992217 GGTGGAGCAACTTATGACTTATAGG 59.008 44.000 0.00 0.00 0.00 2.57
484 492 6.408206 GGTGGAGCAACTTATGACTTATAGGT 60.408 42.308 0.00 0.00 33.41 3.08
485 493 7.048512 GTGGAGCAACTTATGACTTATAGGTT 58.951 38.462 0.00 0.00 40.86 3.50
490 498 7.553881 CAACTTATGACTTATAGGTTGGGTG 57.446 40.000 11.72 0.00 46.99 4.61
491 499 7.335627 CAACTTATGACTTATAGGTTGGGTGA 58.664 38.462 11.72 0.00 46.99 4.02
492 500 6.885922 ACTTATGACTTATAGGTTGGGTGAC 58.114 40.000 0.00 0.00 28.00 3.67
493 501 6.672657 ACTTATGACTTATAGGTTGGGTGACT 59.327 38.462 0.00 0.00 28.00 3.41
494 502 7.182206 ACTTATGACTTATAGGTTGGGTGACTT 59.818 37.037 0.00 0.00 28.00 3.01
495 503 8.612486 TTATGACTTATAGGTTGGGTGACTTA 57.388 34.615 0.00 0.00 0.00 2.24
496 504 7.691993 ATGACTTATAGGTTGGGTGACTTAT 57.308 36.000 0.00 0.00 0.00 1.73
497 505 8.792830 ATGACTTATAGGTTGGGTGACTTATA 57.207 34.615 0.00 0.00 0.00 0.98
498 506 8.612486 TGACTTATAGGTTGGGTGACTTATAA 57.388 34.615 0.00 0.00 34.71 0.98
499 507 8.701895 TGACTTATAGGTTGGGTGACTTATAAG 58.298 37.037 17.86 17.86 46.66 1.73
502 510 9.326413 CTTATAGGTTGGGTGACTTATAAGTTG 57.674 37.037 18.96 0.00 41.92 3.16
503 511 5.836024 AGGTTGGGTGACTTATAAGTTGA 57.164 39.130 18.96 6.85 39.88 3.18
504 512 6.195600 AGGTTGGGTGACTTATAAGTTGAA 57.804 37.500 18.96 6.11 39.88 2.69
505 513 6.790319 AGGTTGGGTGACTTATAAGTTGAAT 58.210 36.000 18.96 0.00 39.88 2.57
506 514 7.238710 AGGTTGGGTGACTTATAAGTTGAATT 58.761 34.615 18.96 0.00 39.88 2.17
507 515 7.728532 AGGTTGGGTGACTTATAAGTTGAATTT 59.271 33.333 18.96 0.00 39.88 1.82
508 516 7.812669 GGTTGGGTGACTTATAAGTTGAATTTG 59.187 37.037 18.96 0.00 39.88 2.32
509 517 8.357402 GTTGGGTGACTTATAAGTTGAATTTGT 58.643 33.333 18.96 0.00 39.88 2.83
510 518 8.472007 TGGGTGACTTATAAGTTGAATTTGTT 57.528 30.769 18.96 0.00 39.88 2.83
511 519 8.919145 TGGGTGACTTATAAGTTGAATTTGTTT 58.081 29.630 18.96 0.00 39.88 2.83
512 520 9.191995 GGGTGACTTATAAGTTGAATTTGTTTG 57.808 33.333 18.96 0.00 39.88 2.93
513 521 9.959749 GGTGACTTATAAGTTGAATTTGTTTGA 57.040 29.630 18.96 0.00 39.88 2.69
579 587 6.378848 TGACTTATTTATAACCAAACAGGCCC 59.621 38.462 0.00 0.00 43.14 5.80
602 610 1.836999 GCCCACCAAACCCCCAATTC 61.837 60.000 0.00 0.00 0.00 2.17
606 614 1.044611 ACCAAACCCCCAATTCGTTG 58.955 50.000 0.00 0.00 0.00 4.10
610 618 0.481128 AACCCCCAATTCGTTGTCCT 59.519 50.000 0.00 0.00 0.00 3.85
611 619 1.364269 ACCCCCAATTCGTTGTCCTA 58.636 50.000 0.00 0.00 0.00 2.94
613 621 3.116959 ACCCCCAATTCGTTGTCCTATA 58.883 45.455 0.00 0.00 0.00 1.31
615 623 4.909088 ACCCCCAATTCGTTGTCCTATATA 59.091 41.667 0.00 0.00 0.00 0.86
616 624 5.370289 ACCCCCAATTCGTTGTCCTATATAA 59.630 40.000 0.00 0.00 0.00 0.98
618 626 7.238096 ACCCCCAATTCGTTGTCCTATATAATA 59.762 37.037 0.00 0.00 0.00 0.98
619 627 7.769044 CCCCCAATTCGTTGTCCTATATAATAG 59.231 40.741 0.00 0.00 0.00 1.73
620 628 7.280205 CCCCAATTCGTTGTCCTATATAATAGC 59.720 40.741 0.00 0.00 0.00 2.97
638 648 4.459089 GCCCTCACCTCGAGCACC 62.459 72.222 6.99 0.00 40.78 5.01
639 649 2.997315 CCCTCACCTCGAGCACCA 60.997 66.667 6.99 0.00 40.78 4.17
640 650 2.583441 CCCTCACCTCGAGCACCAA 61.583 63.158 6.99 0.00 40.78 3.67
641 651 1.374758 CCTCACCTCGAGCACCAAC 60.375 63.158 6.99 0.00 40.78 3.77
798 1554 3.655481 GCTCCGGGCGATTAATGG 58.345 61.111 0.00 0.00 0.00 3.16
799 1555 1.227853 GCTCCGGGCGATTAATGGT 60.228 57.895 0.00 0.00 0.00 3.55
800 1556 0.818040 GCTCCGGGCGATTAATGGTT 60.818 55.000 0.00 0.00 0.00 3.67
801 1557 1.226746 CTCCGGGCGATTAATGGTTC 58.773 55.000 0.00 0.00 0.00 3.62
802 1558 0.531090 TCCGGGCGATTAATGGTTCG 60.531 55.000 0.00 0.44 38.37 3.95
803 1559 0.531090 CCGGGCGATTAATGGTTCGA 60.531 55.000 12.98 0.00 37.55 3.71
822 1578 1.443872 GTTCGATGTCTCGCCGTGT 60.444 57.895 0.00 0.00 44.65 4.49
907 1663 4.024048 TCTGCGTTTCTTTTCTTGACATCC 60.024 41.667 0.00 0.00 0.00 3.51
998 1754 2.919807 GCTAAGCTTTGACTGCAGCAAC 60.920 50.000 15.27 6.41 38.61 4.17
999 1755 0.386838 AAGCTTTGACTGCAGCAACC 59.613 50.000 15.27 11.86 38.61 3.77
1245 2001 4.959596 GCCATCTCGCTCGCCTCC 62.960 72.222 0.00 0.00 0.00 4.30
1904 2660 1.661821 GCGGCTGCATCGGTACTAG 60.662 63.158 14.08 0.00 42.15 2.57
1907 2663 0.032267 GGCTGCATCGGTACTAGTCC 59.968 60.000 0.00 0.00 0.00 3.85
1930 3796 3.288964 ACTCCAGTATACTCTGTTCCCG 58.711 50.000 1.26 0.00 34.02 5.14
1939 3805 7.010552 CAGTATACTCTGTTCCCGAAATTCTTG 59.989 40.741 1.26 0.00 0.00 3.02
1942 3808 3.408634 TCTGTTCCCGAAATTCTTGTCC 58.591 45.455 0.00 0.00 0.00 4.02
1948 3814 0.094730 CGAAATTCTTGTCCCGTCGC 59.905 55.000 0.00 0.00 0.00 5.19
1953 3819 1.461091 TTCTTGTCCCGTCGCTCAGT 61.461 55.000 0.00 0.00 0.00 3.41
1966 3865 1.719600 GCTCAGTTCTTGCTCATCGT 58.280 50.000 0.00 0.00 0.00 3.73
1989 3902 3.809832 ACTGACGAATTCTGTCAAACTGG 59.190 43.478 23.59 17.28 45.05 4.00
1997 3910 3.281727 TCTGTCAAACTGGCTCAAACT 57.718 42.857 0.00 0.00 0.00 2.66
2028 3941 1.437735 GAATGCGCGCGACATGATC 60.438 57.895 37.18 24.18 0.00 2.92
2106 4019 0.478507 CAAGGGGTGGAGTGGAAACT 59.521 55.000 0.00 0.00 0.00 2.66
2154 4067 4.216257 AGCAAGACAAATTCACATTAGCGT 59.784 37.500 0.00 0.00 0.00 5.07
2162 4075 2.472695 TCACATTAGCGTTGAAGGCT 57.527 45.000 16.93 16.93 42.54 4.58
2173 4086 2.612972 CGTTGAAGGCTGTCACAGGTAT 60.613 50.000 7.00 0.00 31.21 2.73
2183 4099 4.396166 GCTGTCACAGGTATAACATGCTTT 59.604 41.667 7.00 0.00 32.34 3.51
2191 4107 5.005779 CAGGTATAACATGCTTTGAGTCGTC 59.994 44.000 0.00 0.00 0.00 4.20
2202 4118 4.495828 GCTTTGAGTCGTCAAGTTTTGTTC 59.504 41.667 0.00 0.00 43.66 3.18
2203 4119 4.609691 TTGAGTCGTCAAGTTTTGTTCC 57.390 40.909 0.00 0.00 37.79 3.62
2210 4126 5.575218 GTCGTCAAGTTTTGTTCCAAAACAT 59.425 36.000 25.70 16.27 44.59 2.71
2237 4153 4.299586 TGACAGAAATTCATGGGCACTA 57.700 40.909 0.00 0.00 0.00 2.74
2373 4292 2.765135 TCTTCAGAAGAGGAGGATGCTG 59.235 50.000 8.95 0.00 36.27 4.41
2409 4328 2.357034 TTCGAGCAGAACGGTGGC 60.357 61.111 0.00 0.00 33.14 5.01
2436 4355 3.052082 CAGCAGCACCTGGGTTCG 61.052 66.667 0.00 0.00 31.21 3.95
2682 4601 1.800586 CAGATCAACCACAGGAACGTG 59.199 52.381 0.00 0.00 36.61 4.49
2694 4613 1.571460 GAACGTGGTGAAGCTGCTG 59.429 57.895 1.35 0.00 0.00 4.41
2766 4685 3.866582 GGCAGCCTCCACCGCTAT 61.867 66.667 3.29 0.00 33.91 2.97
2780 4699 2.126071 CTATATCCACGGCGGCGG 60.126 66.667 35.05 22.67 33.14 6.13
3037 4956 1.685148 GTACCTCGACCCGGAGTATT 58.315 55.000 0.73 0.00 31.98 1.89
3183 5102 1.444553 CTCCTTCGTCACGGCTGTC 60.445 63.158 0.00 0.00 0.00 3.51
3186 5105 1.300620 CTTCGTCACGGCTGTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
3379 5298 5.182190 TGCAGAAATGCAACCGTATAGAAAA 59.818 36.000 0.00 0.00 42.40 2.29
3380 5299 6.090129 GCAGAAATGCAACCGTATAGAAAAA 58.910 36.000 0.00 0.00 34.41 1.94
3447 5366 3.884900 GTGTACCGGCACACCATC 58.115 61.111 25.00 1.94 42.46 3.51
3448 5367 1.743995 GTGTACCGGCACACCATCC 60.744 63.158 25.00 1.55 42.46 3.51
3449 5368 2.510691 GTACCGGCACACCATCCG 60.511 66.667 0.00 0.00 44.89 4.18
3450 5369 2.998480 TACCGGCACACCATCCGT 60.998 61.111 0.00 0.00 43.87 4.69
3451 5370 3.009192 TACCGGCACACCATCCGTC 62.009 63.158 0.00 0.00 43.87 4.79
3453 5372 4.082523 CGGCACACCATCCGTCCT 62.083 66.667 0.00 0.00 40.72 3.85
3454 5373 2.351276 GGCACACCATCCGTCCTT 59.649 61.111 0.00 0.00 35.26 3.36
3455 5374 2.040544 GGCACACCATCCGTCCTTG 61.041 63.158 0.00 0.00 35.26 3.61
3456 5375 2.040544 GCACACCATCCGTCCTTGG 61.041 63.158 0.00 0.00 39.02 3.61
3459 5378 3.900888 ACCATCCGTCCTTGGTGT 58.099 55.556 0.00 0.00 44.49 4.16
3460 5379 1.374947 ACCATCCGTCCTTGGTGTG 59.625 57.895 0.00 0.00 44.49 3.82
3461 5380 1.377202 CCATCCGTCCTTGGTGTGG 60.377 63.158 0.00 0.00 32.47 4.17
3462 5381 1.374947 CATCCGTCCTTGGTGTGGT 59.625 57.895 0.00 0.00 0.00 4.16
3463 5382 0.250727 CATCCGTCCTTGGTGTGGTT 60.251 55.000 0.00 0.00 0.00 3.67
3464 5383 0.476771 ATCCGTCCTTGGTGTGGTTT 59.523 50.000 0.00 0.00 0.00 3.27
3465 5384 0.464735 TCCGTCCTTGGTGTGGTTTG 60.465 55.000 0.00 0.00 0.00 2.93
3466 5385 1.358759 CGTCCTTGGTGTGGTTTGC 59.641 57.895 0.00 0.00 0.00 3.68
3467 5386 1.358759 GTCCTTGGTGTGGTTTGCG 59.641 57.895 0.00 0.00 0.00 4.85
3468 5387 1.098712 GTCCTTGGTGTGGTTTGCGA 61.099 55.000 0.00 0.00 0.00 5.10
3469 5388 0.179004 TCCTTGGTGTGGTTTGCGAT 60.179 50.000 0.00 0.00 0.00 4.58
3470 5389 0.673437 CCTTGGTGTGGTTTGCGATT 59.327 50.000 0.00 0.00 0.00 3.34
3471 5390 1.068434 CCTTGGTGTGGTTTGCGATTT 59.932 47.619 0.00 0.00 0.00 2.17
3472 5391 2.126467 CTTGGTGTGGTTTGCGATTTG 58.874 47.619 0.00 0.00 0.00 2.32
3473 5392 1.107114 TGGTGTGGTTTGCGATTTGT 58.893 45.000 0.00 0.00 0.00 2.83
3474 5393 1.202348 TGGTGTGGTTTGCGATTTGTG 60.202 47.619 0.00 0.00 0.00 3.33
3475 5394 1.202359 GGTGTGGTTTGCGATTTGTGT 60.202 47.619 0.00 0.00 0.00 3.72
3476 5395 2.535331 GTGTGGTTTGCGATTTGTGTT 58.465 42.857 0.00 0.00 0.00 3.32
3477 5396 3.489398 GGTGTGGTTTGCGATTTGTGTTA 60.489 43.478 0.00 0.00 0.00 2.41
3478 5397 4.295051 GTGTGGTTTGCGATTTGTGTTAT 58.705 39.130 0.00 0.00 0.00 1.89
3479 5398 4.742659 GTGTGGTTTGCGATTTGTGTTATT 59.257 37.500 0.00 0.00 0.00 1.40
3480 5399 4.742167 TGTGGTTTGCGATTTGTGTTATTG 59.258 37.500 0.00 0.00 0.00 1.90
3481 5400 4.149747 GTGGTTTGCGATTTGTGTTATTGG 59.850 41.667 0.00 0.00 0.00 3.16
3482 5401 4.038042 TGGTTTGCGATTTGTGTTATTGGA 59.962 37.500 0.00 0.00 0.00 3.53
3483 5402 5.167845 GGTTTGCGATTTGTGTTATTGGAT 58.832 37.500 0.00 0.00 0.00 3.41
3484 5403 5.062058 GGTTTGCGATTTGTGTTATTGGATG 59.938 40.000 0.00 0.00 0.00 3.51
3485 5404 4.368874 TGCGATTTGTGTTATTGGATGG 57.631 40.909 0.00 0.00 0.00 3.51
3486 5405 3.115554 GCGATTTGTGTTATTGGATGGC 58.884 45.455 0.00 0.00 0.00 4.40
3487 5406 3.705604 CGATTTGTGTTATTGGATGGCC 58.294 45.455 0.00 0.00 0.00 5.36
3488 5407 3.490761 CGATTTGTGTTATTGGATGGCCC 60.491 47.826 0.00 0.00 0.00 5.80
3489 5408 2.612285 TTGTGTTATTGGATGGCCCA 57.388 45.000 0.00 0.00 44.93 5.36
3490 5409 1.846007 TGTGTTATTGGATGGCCCAC 58.154 50.000 0.00 0.00 46.62 4.61
3491 5410 1.076187 TGTGTTATTGGATGGCCCACA 59.924 47.619 0.00 0.11 46.62 4.17
3492 5411 1.750778 GTGTTATTGGATGGCCCACAG 59.249 52.381 0.00 0.00 46.62 3.66
3493 5412 0.746659 GTTATTGGATGGCCCACAGC 59.253 55.000 0.00 0.00 46.62 4.40
3494 5413 0.630673 TTATTGGATGGCCCACAGCT 59.369 50.000 0.00 0.00 46.62 4.24
3495 5414 0.630673 TATTGGATGGCCCACAGCTT 59.369 50.000 0.00 0.00 46.62 3.74
3496 5415 0.252375 ATTGGATGGCCCACAGCTTT 60.252 50.000 0.00 0.00 46.62 3.51
3497 5416 1.186917 TTGGATGGCCCACAGCTTTG 61.187 55.000 0.00 0.00 46.62 2.77
3498 5417 1.607467 GGATGGCCCACAGCTTTGT 60.607 57.895 0.00 0.00 43.05 2.83
3499 5418 0.323360 GGATGGCCCACAGCTTTGTA 60.323 55.000 0.00 0.00 43.05 2.41
3500 5419 1.686115 GGATGGCCCACAGCTTTGTAT 60.686 52.381 0.00 0.00 43.05 2.29
3501 5420 1.678101 GATGGCCCACAGCTTTGTATC 59.322 52.381 0.00 0.00 43.05 2.24
3502 5421 0.698238 TGGCCCACAGCTTTGTATCT 59.302 50.000 0.00 0.00 43.05 1.98
3503 5422 1.340017 TGGCCCACAGCTTTGTATCTC 60.340 52.381 0.00 0.00 43.05 2.75
3504 5423 1.340017 GGCCCACAGCTTTGTATCTCA 60.340 52.381 0.00 0.00 43.05 3.27
3505 5424 1.740025 GCCCACAGCTTTGTATCTCAC 59.260 52.381 0.00 0.00 38.99 3.51
3506 5425 2.616510 GCCCACAGCTTTGTATCTCACT 60.617 50.000 0.00 0.00 38.99 3.41
3507 5426 3.005554 CCCACAGCTTTGTATCTCACTG 58.994 50.000 0.00 0.00 0.00 3.66
3508 5427 2.417933 CCACAGCTTTGTATCTCACTGC 59.582 50.000 0.00 0.00 0.00 4.40
3509 5428 2.417933 CACAGCTTTGTATCTCACTGCC 59.582 50.000 0.00 0.00 0.00 4.85
3510 5429 2.304180 ACAGCTTTGTATCTCACTGCCT 59.696 45.455 0.00 0.00 0.00 4.75
3511 5430 3.244700 ACAGCTTTGTATCTCACTGCCTT 60.245 43.478 0.00 0.00 0.00 4.35
3512 5431 3.373439 CAGCTTTGTATCTCACTGCCTTC 59.627 47.826 0.00 0.00 0.00 3.46
3513 5432 2.680339 GCTTTGTATCTCACTGCCTTCC 59.320 50.000 0.00 0.00 0.00 3.46
3514 5433 3.869912 GCTTTGTATCTCACTGCCTTCCA 60.870 47.826 0.00 0.00 0.00 3.53
3515 5434 4.326826 CTTTGTATCTCACTGCCTTCCAA 58.673 43.478 0.00 0.00 0.00 3.53
3516 5435 3.334583 TGTATCTCACTGCCTTCCAAC 57.665 47.619 0.00 0.00 0.00 3.77
3517 5436 2.637382 TGTATCTCACTGCCTTCCAACA 59.363 45.455 0.00 0.00 0.00 3.33
3518 5437 2.486472 ATCTCACTGCCTTCCAACAG 57.514 50.000 0.00 0.00 39.86 3.16
3519 5438 1.423584 TCTCACTGCCTTCCAACAGA 58.576 50.000 0.00 0.00 37.35 3.41
3520 5439 1.345741 TCTCACTGCCTTCCAACAGAG 59.654 52.381 0.00 0.00 37.35 3.35
3521 5440 0.250467 TCACTGCCTTCCAACAGAGC 60.250 55.000 0.00 0.00 37.35 4.09
3522 5441 1.073897 ACTGCCTTCCAACAGAGCC 59.926 57.895 0.00 0.00 37.35 4.70
3523 5442 1.676967 CTGCCTTCCAACAGAGCCC 60.677 63.158 0.00 0.00 35.90 5.19
3524 5443 2.747855 GCCTTCCAACAGAGCCCG 60.748 66.667 0.00 0.00 0.00 6.13
3525 5444 2.045926 CCTTCCAACAGAGCCCGG 60.046 66.667 0.00 0.00 0.00 5.73
3526 5445 2.750350 CTTCCAACAGAGCCCGGT 59.250 61.111 0.00 0.00 0.00 5.28
3527 5446 1.376037 CTTCCAACAGAGCCCGGTC 60.376 63.158 0.00 0.00 0.00 4.79
3528 5447 1.831652 CTTCCAACAGAGCCCGGTCT 61.832 60.000 0.00 0.00 0.00 3.85
3534 5453 3.669354 CAGAGCCCGGTCTGTATTC 57.331 57.895 14.36 0.00 39.39 1.75
3535 5454 0.824109 CAGAGCCCGGTCTGTATTCA 59.176 55.000 14.36 0.00 39.39 2.57
3536 5455 0.824759 AGAGCCCGGTCTGTATTCAC 59.175 55.000 0.00 0.00 0.00 3.18
3544 5463 3.021695 CGGTCTGTATTCACTACTCCCA 58.978 50.000 0.00 0.00 0.00 4.37
3545 5464 3.446161 CGGTCTGTATTCACTACTCCCAA 59.554 47.826 0.00 0.00 0.00 4.12
3558 5477 1.138661 ACTCCCAACGTCACGGTTTAA 59.861 47.619 0.35 0.00 0.00 1.52
3561 5480 3.012518 TCCCAACGTCACGGTTTAAAAA 58.987 40.909 0.35 0.00 0.00 1.94
3577 5496 1.864565 AAAAGCGCGCTTGGAAATTT 58.135 40.000 43.43 29.91 36.26 1.82
3579 5498 1.864565 AAGCGCGCTTGGAAATTTTT 58.135 40.000 42.62 17.47 34.60 1.94
3580 5499 1.418373 AGCGCGCTTGGAAATTTTTC 58.582 45.000 31.32 0.00 36.46 2.29
3583 5502 1.664588 CGCGCTTGGAAATTTTTCGGA 60.665 47.619 5.56 0.00 38.06 4.55
3590 5509 5.048294 GCTTGGAAATTTTTCGGAACCTAGA 60.048 40.000 7.92 0.00 38.06 2.43
3596 5515 7.524863 GGAAATTTTTCGGAACCTAGATGGTTT 60.525 37.037 1.41 0.00 46.78 3.27
3617 5536 2.746279 TTGTTGGTTGTGAGATGGGT 57.254 45.000 0.00 0.00 0.00 4.51
3702 5621 5.505173 ACTAGAAATAAATGCAATGCGCT 57.495 34.783 9.73 0.00 43.06 5.92
3709 5628 3.855689 AAATGCAATGCGCTCTAAACT 57.144 38.095 9.73 0.00 43.06 2.66
3722 5641 7.039270 TGCGCTCTAAACTTTGTCTATTATGA 58.961 34.615 9.73 0.00 0.00 2.15
3736 5655 7.257003 TGTCTATTATGAAAATGCACGCAAAT 58.743 30.769 0.00 0.00 0.00 2.32
3742 5661 5.335827 TGAAAATGCACGCAAATTTAACC 57.664 34.783 0.00 0.00 0.00 2.85
3772 5691 2.233305 AACTGTGACGGAGGGAGTAT 57.767 50.000 0.00 0.00 0.00 2.12
3774 5693 3.377253 ACTGTGACGGAGGGAGTATTA 57.623 47.619 0.00 0.00 0.00 0.98
3779 5698 5.263599 TGTGACGGAGGGAGTATTACTTTA 58.736 41.667 0.00 0.00 0.00 1.85
3861 5781 4.819769 ACCGCATGCAAATTAAATCTTGT 58.180 34.783 19.57 0.00 0.00 3.16
4080 6025 6.748132 TCTTTGGATTGAGTGAAACCAATTC 58.252 36.000 4.95 0.00 37.68 2.17
4197 6675 9.614792 AACTAGTTACTCAAAGAAATGTGAAGT 57.385 29.630 6.26 0.00 0.00 3.01
4213 6691 8.915871 AATGTGAAGTTGATTATTTCCAATCG 57.084 30.769 0.00 0.00 37.68 3.34
4314 6871 7.953158 TCTGAAACTAGTGAAATGAGTGAAG 57.047 36.000 0.00 0.00 0.00 3.02
4335 6921 9.974750 GTGAAGTCTATCTTTTGTAATTAGTGC 57.025 33.333 0.00 0.00 36.40 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.459923 GCATTTACACTTGTTGGGGAAATAA 58.540 36.000 0.00 0.00 0.00 1.40
41 42 7.950512 TGTGTTATATCATTATGCTTTTGGGG 58.049 34.615 0.00 0.00 0.00 4.96
64 65 2.574006 ACACACATGAGGATGCTTGT 57.426 45.000 0.00 0.00 32.14 3.16
68 69 4.970662 ACATAAACACACATGAGGATGC 57.029 40.909 0.00 0.00 32.14 3.91
111 113 4.550076 TTGATTAAAAGCCAATGGGGTG 57.450 40.909 0.00 0.00 46.38 4.61
177 180 7.267857 GGGGAAATATGACTTTTTGGATTCAG 58.732 38.462 0.00 0.00 0.00 3.02
190 193 6.230472 GGCATTAATTTGGGGGAAATATGAC 58.770 40.000 0.00 0.00 32.76 3.06
213 220 8.224389 TGTAAAATGTACTGATTCATCATGGG 57.776 34.615 0.00 0.00 36.02 4.00
223 230 6.849085 TTTGGGCATGTAAAATGTACTGAT 57.151 33.333 0.00 0.00 0.00 2.90
235 242 3.979911 ACTCATGGATTTTGGGCATGTA 58.020 40.909 0.00 0.00 0.00 2.29
258 266 2.304221 ACAGGCCCTTAAGGTTTTCC 57.696 50.000 20.22 14.31 38.26 3.13
263 271 0.857675 ACCAAACAGGCCCTTAAGGT 59.142 50.000 20.22 0.00 43.14 3.50
264 272 2.009681 AACCAAACAGGCCCTTAAGG 57.990 50.000 15.14 15.14 43.14 2.69
265 273 2.962421 TGAAACCAAACAGGCCCTTAAG 59.038 45.455 0.00 0.00 43.14 1.85
266 274 3.033659 TGAAACCAAACAGGCCCTTAA 57.966 42.857 0.00 0.00 43.14 1.85
267 275 2.757894 TGAAACCAAACAGGCCCTTA 57.242 45.000 0.00 0.00 43.14 2.69
268 276 1.872773 TTGAAACCAAACAGGCCCTT 58.127 45.000 0.00 0.00 43.14 3.95
269 277 2.101640 ATTGAAACCAAACAGGCCCT 57.898 45.000 0.00 0.00 43.14 5.19
270 278 3.323691 ACTTATTGAAACCAAACAGGCCC 59.676 43.478 0.00 0.00 43.14 5.80
271 279 4.038642 TGACTTATTGAAACCAAACAGGCC 59.961 41.667 0.00 0.00 43.14 5.19
272 280 5.195001 TGACTTATTGAAACCAAACAGGC 57.805 39.130 0.00 0.00 43.14 4.85
273 281 5.010012 AGCTGACTTATTGAAACCAAACAGG 59.990 40.000 0.00 0.00 45.67 4.00
274 282 5.916883 CAGCTGACTTATTGAAACCAAACAG 59.083 40.000 8.42 0.00 0.00 3.16
275 283 5.592282 TCAGCTGACTTATTGAAACCAAACA 59.408 36.000 13.74 0.00 0.00 2.83
276 284 5.915196 GTCAGCTGACTTATTGAAACCAAAC 59.085 40.000 34.54 7.02 41.65 2.93
277 285 6.072112 GTCAGCTGACTTATTGAAACCAAA 57.928 37.500 34.54 0.00 41.65 3.28
278 286 5.689383 GTCAGCTGACTTATTGAAACCAA 57.311 39.130 34.54 0.00 41.65 3.67
329 337 6.930667 ACCAAACAAACGTGACTTATAAGT 57.069 33.333 18.05 18.05 43.16 2.24
330 338 7.190871 ACAACCAAACAAACGTGACTTATAAG 58.809 34.615 11.05 11.05 0.00 1.73
331 339 7.086230 ACAACCAAACAAACGTGACTTATAA 57.914 32.000 0.00 0.00 0.00 0.98
332 340 6.315642 TGACAACCAAACAAACGTGACTTATA 59.684 34.615 0.00 0.00 0.00 0.98
333 341 5.124138 TGACAACCAAACAAACGTGACTTAT 59.876 36.000 0.00 0.00 0.00 1.73
334 342 4.454847 TGACAACCAAACAAACGTGACTTA 59.545 37.500 0.00 0.00 0.00 2.24
335 343 3.253677 TGACAACCAAACAAACGTGACTT 59.746 39.130 0.00 0.00 0.00 3.01
336 344 2.814919 TGACAACCAAACAAACGTGACT 59.185 40.909 0.00 0.00 0.00 3.41
337 345 2.912345 GTGACAACCAAACAAACGTGAC 59.088 45.455 0.00 0.00 0.00 3.67
338 346 2.095161 GGTGACAACCAAACAAACGTGA 60.095 45.455 0.00 0.00 46.75 4.35
339 347 2.255316 GGTGACAACCAAACAAACGTG 58.745 47.619 0.00 0.00 46.75 4.49
340 348 2.640346 GGTGACAACCAAACAAACGT 57.360 45.000 0.00 0.00 46.75 3.99
362 370 4.142004 GGTGTGGTCGGATGACTTATAAGT 60.142 45.833 18.05 18.05 44.83 2.24
363 371 4.099573 AGGTGTGGTCGGATGACTTATAAG 59.900 45.833 11.05 11.05 44.83 1.73
364 372 4.028131 AGGTGTGGTCGGATGACTTATAA 58.972 43.478 0.00 0.00 44.83 0.98
365 373 3.638860 AGGTGTGGTCGGATGACTTATA 58.361 45.455 0.00 0.00 44.83 0.98
366 374 2.467880 AGGTGTGGTCGGATGACTTAT 58.532 47.619 0.00 0.00 44.83 1.73
367 375 1.933021 AGGTGTGGTCGGATGACTTA 58.067 50.000 0.00 0.00 44.83 2.24
368 376 1.056660 AAGGTGTGGTCGGATGACTT 58.943 50.000 0.00 0.00 44.83 3.01
369 377 1.056660 AAAGGTGTGGTCGGATGACT 58.943 50.000 0.00 0.00 44.83 3.41
370 378 1.804748 GAAAAGGTGTGGTCGGATGAC 59.195 52.381 0.00 0.00 44.72 3.06
371 379 1.418264 TGAAAAGGTGTGGTCGGATGA 59.582 47.619 0.00 0.00 0.00 2.92
372 380 1.535462 GTGAAAAGGTGTGGTCGGATG 59.465 52.381 0.00 0.00 0.00 3.51
373 381 1.544759 GGTGAAAAGGTGTGGTCGGAT 60.545 52.381 0.00 0.00 0.00 4.18
374 382 0.179040 GGTGAAAAGGTGTGGTCGGA 60.179 55.000 0.00 0.00 0.00 4.55
375 383 0.179029 AGGTGAAAAGGTGTGGTCGG 60.179 55.000 0.00 0.00 0.00 4.79
376 384 1.333619 CAAGGTGAAAAGGTGTGGTCG 59.666 52.381 0.00 0.00 0.00 4.79
377 385 2.375146 ACAAGGTGAAAAGGTGTGGTC 58.625 47.619 0.00 0.00 0.00 4.02
378 386 2.525105 ACAAGGTGAAAAGGTGTGGT 57.475 45.000 0.00 0.00 0.00 4.16
379 387 3.885724 AAACAAGGTGAAAAGGTGTGG 57.114 42.857 0.00 0.00 0.00 4.17
399 407 5.717654 GGGTCCCACCATCTTTACATAAAAA 59.282 40.000 1.78 0.00 41.02 1.94
400 408 5.222358 TGGGTCCCACCATCTTTACATAAAA 60.222 40.000 6.47 0.00 41.02 1.52
401 409 4.292571 TGGGTCCCACCATCTTTACATAAA 59.707 41.667 6.47 0.00 41.02 1.40
402 410 3.853181 TGGGTCCCACCATCTTTACATAA 59.147 43.478 6.47 0.00 41.02 1.90
403 411 3.465832 TGGGTCCCACCATCTTTACATA 58.534 45.455 6.47 0.00 41.02 2.29
404 412 2.283834 TGGGTCCCACCATCTTTACAT 58.716 47.619 6.47 0.00 41.02 2.29
405 413 1.748732 TGGGTCCCACCATCTTTACA 58.251 50.000 6.47 0.00 41.02 2.41
416 424 0.397816 CCCTTTTTGTGTGGGTCCCA 60.398 55.000 6.47 6.47 36.32 4.37
417 425 1.118965 CCCCTTTTTGTGTGGGTCCC 61.119 60.000 0.00 0.00 39.31 4.46
418 426 2.436521 CCCCTTTTTGTGTGGGTCC 58.563 57.895 0.00 0.00 39.31 4.46
421 429 0.750249 GTCACCCCTTTTTGTGTGGG 59.250 55.000 0.00 0.00 44.03 4.61
422 430 1.775385 AGTCACCCCTTTTTGTGTGG 58.225 50.000 0.00 0.00 34.14 4.17
423 431 6.264518 ACTTATAAGTCACCCCTTTTTGTGTG 59.735 38.462 12.50 0.00 32.86 3.82
424 432 6.370453 ACTTATAAGTCACCCCTTTTTGTGT 58.630 36.000 12.50 0.00 32.86 3.72
425 433 6.894339 ACTTATAAGTCACCCCTTTTTGTG 57.106 37.500 12.50 0.00 32.86 3.33
426 434 7.907841 AAACTTATAAGTCACCCCTTTTTGT 57.092 32.000 18.28 0.00 38.57 2.83
429 437 9.650714 ACTTAAAACTTATAAGTCACCCCTTTT 57.349 29.630 18.28 14.40 38.85 2.27
430 438 9.650714 AACTTAAAACTTATAAGTCACCCCTTT 57.349 29.630 18.28 15.02 41.49 3.11
431 439 9.074576 CAACTTAAAACTTATAAGTCACCCCTT 57.925 33.333 18.28 5.47 41.49 3.95
432 440 7.668469 CCAACTTAAAACTTATAAGTCACCCCT 59.332 37.037 18.28 0.00 41.49 4.79
433 441 7.094075 CCCAACTTAAAACTTATAAGTCACCCC 60.094 40.741 18.28 0.00 41.49 4.95
434 442 7.094075 CCCCAACTTAAAACTTATAAGTCACCC 60.094 40.741 18.28 0.00 41.49 4.61
435 443 7.449395 ACCCCAACTTAAAACTTATAAGTCACC 59.551 37.037 18.28 0.00 41.49 4.02
436 444 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
437 445 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
438 446 7.666804 TCCACCCCAACTTAAAACTTATAAGTC 59.333 37.037 18.28 0.00 41.49 3.01
439 447 7.528675 TCCACCCCAACTTAAAACTTATAAGT 58.471 34.615 12.50 12.50 43.57 2.24
440 448 7.362660 GCTCCACCCCAACTTAAAACTTATAAG 60.363 40.741 11.05 11.05 36.62 1.73
441 449 6.434965 GCTCCACCCCAACTTAAAACTTATAA 59.565 38.462 0.00 0.00 0.00 0.98
442 450 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
443 451 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
444 452 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
445 453 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
446 454 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
447 455 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
448 456 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
449 457 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
450 458 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
451 459 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
452 460 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
453 461 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
454 462 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
455 463 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
456 464 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
457 465 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
458 466 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
459 467 5.992217 CCTATAAGTCATAAGTTGCTCCACC 59.008 44.000 0.00 0.00 0.00 4.61
460 468 6.583562 ACCTATAAGTCATAAGTTGCTCCAC 58.416 40.000 0.00 0.00 0.00 4.02
461 469 6.808321 ACCTATAAGTCATAAGTTGCTCCA 57.192 37.500 0.00 0.00 0.00 3.86
462 470 6.483640 CCAACCTATAAGTCATAAGTTGCTCC 59.516 42.308 0.00 0.00 39.04 4.70
463 471 6.483640 CCCAACCTATAAGTCATAAGTTGCTC 59.516 42.308 0.00 0.00 39.04 4.26
464 472 6.069615 ACCCAACCTATAAGTCATAAGTTGCT 60.070 38.462 0.00 0.00 39.04 3.91
465 473 6.038271 CACCCAACCTATAAGTCATAAGTTGC 59.962 42.308 0.00 0.00 39.04 4.17
466 474 7.280205 GTCACCCAACCTATAAGTCATAAGTTG 59.720 40.741 0.00 0.00 39.65 3.16
467 475 7.182206 AGTCACCCAACCTATAAGTCATAAGTT 59.818 37.037 0.00 0.00 0.00 2.66
468 476 6.672657 AGTCACCCAACCTATAAGTCATAAGT 59.327 38.462 0.00 0.00 0.00 2.24
469 477 7.125792 AGTCACCCAACCTATAAGTCATAAG 57.874 40.000 0.00 0.00 0.00 1.73
470 478 7.504926 AAGTCACCCAACCTATAAGTCATAA 57.495 36.000 0.00 0.00 0.00 1.90
471 479 8.792830 ATAAGTCACCCAACCTATAAGTCATA 57.207 34.615 0.00 0.00 0.00 2.15
472 480 7.691993 ATAAGTCACCCAACCTATAAGTCAT 57.308 36.000 0.00 0.00 0.00 3.06
473 481 8.612486 TTATAAGTCACCCAACCTATAAGTCA 57.388 34.615 0.00 0.00 0.00 3.41
474 482 8.702819 ACTTATAAGTCACCCAACCTATAAGTC 58.297 37.037 12.50 0.00 41.31 3.01
475 483 8.619683 ACTTATAAGTCACCCAACCTATAAGT 57.380 34.615 12.50 10.26 40.85 2.24
476 484 9.326413 CAACTTATAAGTCACCCAACCTATAAG 57.674 37.037 18.28 9.36 39.68 1.73
477 485 9.049050 TCAACTTATAAGTCACCCAACCTATAA 57.951 33.333 18.28 0.00 38.57 0.98
478 486 8.612486 TCAACTTATAAGTCACCCAACCTATA 57.388 34.615 18.28 0.00 38.57 1.31
479 487 7.504926 TCAACTTATAAGTCACCCAACCTAT 57.495 36.000 18.28 0.00 38.57 2.57
480 488 6.938698 TCAACTTATAAGTCACCCAACCTA 57.061 37.500 18.28 0.00 38.57 3.08
481 489 5.836024 TCAACTTATAAGTCACCCAACCT 57.164 39.130 18.28 0.00 38.57 3.50
482 490 7.462571 AATTCAACTTATAAGTCACCCAACC 57.537 36.000 18.28 0.00 38.57 3.77
483 491 8.357402 ACAAATTCAACTTATAAGTCACCCAAC 58.643 33.333 18.28 0.00 38.57 3.77
484 492 8.472007 ACAAATTCAACTTATAAGTCACCCAA 57.528 30.769 18.28 7.61 38.57 4.12
485 493 8.472007 AACAAATTCAACTTATAAGTCACCCA 57.528 30.769 18.28 2.56 38.57 4.51
486 494 9.191995 CAAACAAATTCAACTTATAAGTCACCC 57.808 33.333 18.28 0.00 38.57 4.61
487 495 9.959749 TCAAACAAATTCAACTTATAAGTCACC 57.040 29.630 18.28 0.00 38.57 4.02
551 559 8.682710 GCCTGTTTGGTTATAAATAAGTCATCA 58.317 33.333 0.00 0.00 38.35 3.07
552 560 8.135529 GGCCTGTTTGGTTATAAATAAGTCATC 58.864 37.037 0.00 0.00 38.35 2.92
553 561 7.069455 GGGCCTGTTTGGTTATAAATAAGTCAT 59.931 37.037 0.84 0.00 38.35 3.06
554 562 6.378848 GGGCCTGTTTGGTTATAAATAAGTCA 59.621 38.462 0.84 0.00 38.35 3.41
555 563 6.605995 AGGGCCTGTTTGGTTATAAATAAGTC 59.394 38.462 4.50 0.00 38.35 3.01
556 564 6.499436 AGGGCCTGTTTGGTTATAAATAAGT 58.501 36.000 4.50 0.00 38.35 2.24
557 565 8.528044 TTAGGGCCTGTTTGGTTATAAATAAG 57.472 34.615 18.53 0.00 38.35 1.73
558 566 7.068962 GCTTAGGGCCTGTTTGGTTATAAATAA 59.931 37.037 18.53 0.00 38.35 1.40
559 567 6.548251 GCTTAGGGCCTGTTTGGTTATAAATA 59.452 38.462 18.53 0.00 38.35 1.40
560 568 5.362717 GCTTAGGGCCTGTTTGGTTATAAAT 59.637 40.000 18.53 0.00 38.35 1.40
561 569 4.707934 GCTTAGGGCCTGTTTGGTTATAAA 59.292 41.667 18.53 0.00 38.35 1.40
562 570 4.274978 GCTTAGGGCCTGTTTGGTTATAA 58.725 43.478 18.53 0.00 38.35 0.98
563 571 3.893521 GCTTAGGGCCTGTTTGGTTATA 58.106 45.455 18.53 0.00 38.35 0.98
564 572 2.735151 GCTTAGGGCCTGTTTGGTTAT 58.265 47.619 18.53 0.00 38.35 1.89
565 573 2.209690 GCTTAGGGCCTGTTTGGTTA 57.790 50.000 18.53 0.00 38.35 2.85
566 574 3.051617 GCTTAGGGCCTGTTTGGTT 57.948 52.632 18.53 0.00 38.35 3.67
567 575 4.843624 GCTTAGGGCCTGTTTGGT 57.156 55.556 18.53 0.00 38.35 3.67
576 584 1.982395 GGTTTGGTGGGCTTAGGGC 60.982 63.158 0.00 0.00 40.90 5.19
579 587 1.304962 GGGGGTTTGGTGGGCTTAG 60.305 63.158 0.00 0.00 0.00 2.18
602 610 4.110482 GGGCGCTATTATATAGGACAACG 58.890 47.826 7.64 0.00 0.00 4.10
606 614 4.202131 GGTGAGGGCGCTATTATATAGGAC 60.202 50.000 7.64 0.00 0.00 3.85
610 618 3.630769 CGAGGTGAGGGCGCTATTATATA 59.369 47.826 7.64 0.00 0.00 0.86
611 619 2.427453 CGAGGTGAGGGCGCTATTATAT 59.573 50.000 7.64 0.00 0.00 0.86
613 621 0.603569 CGAGGTGAGGGCGCTATTAT 59.396 55.000 7.64 0.00 0.00 1.28
615 623 1.739338 CTCGAGGTGAGGGCGCTATT 61.739 60.000 7.64 0.00 41.29 1.73
616 624 2.123854 TCGAGGTGAGGGCGCTAT 60.124 61.111 7.64 0.00 0.00 2.97
620 628 4.803426 GTGCTCGAGGTGAGGGCG 62.803 72.222 15.58 0.00 45.38 6.13
638 648 9.217223 CCGAATAAATACGAGTAAAATTGGTTG 57.783 33.333 0.00 0.00 0.00 3.77
639 649 7.911727 GCCGAATAAATACGAGTAAAATTGGTT 59.088 33.333 0.00 0.00 0.00 3.67
640 650 7.412063 GCCGAATAAATACGAGTAAAATTGGT 58.588 34.615 0.00 0.00 0.00 3.67
641 651 6.854381 GGCCGAATAAATACGAGTAAAATTGG 59.146 38.462 0.00 0.00 0.00 3.16
822 1578 2.342279 CTTCGTTGACGGGGAGCA 59.658 61.111 3.48 0.00 40.29 4.26
868 1624 2.051518 AGAGACCAGAGAGCGGCAG 61.052 63.158 1.45 0.00 0.00 4.85
907 1663 2.293677 TTGATTGGTGATCGACGGAG 57.706 50.000 0.00 0.00 37.60 4.63
1227 1983 4.212913 GAGGCGAGCGAGATGGCA 62.213 66.667 0.00 0.00 34.64 4.92
1431 2187 2.418083 CCCGGTCACGTAGTACCCC 61.418 68.421 0.00 0.00 41.61 4.95
1904 2660 3.543665 ACAGAGTATACTGGAGTCGGAC 58.456 50.000 10.90 0.00 41.59 4.79
1907 2663 3.315749 GGGAACAGAGTATACTGGAGTCG 59.684 52.174 10.90 0.00 41.59 4.18
1908 2664 3.315749 CGGGAACAGAGTATACTGGAGTC 59.684 52.174 10.90 2.66 41.59 3.36
1909 2665 3.053842 TCGGGAACAGAGTATACTGGAGT 60.054 47.826 10.90 2.92 41.59 3.85
1913 3779 6.574350 AGAATTTCGGGAACAGAGTATACTG 58.426 40.000 10.90 0.00 42.78 2.74
1930 3796 1.393883 GAGCGACGGGACAAGAATTTC 59.606 52.381 0.00 0.00 0.00 2.17
1939 3805 1.009389 CAAGAACTGAGCGACGGGAC 61.009 60.000 0.00 0.00 0.00 4.46
1942 3808 1.347817 GAGCAAGAACTGAGCGACGG 61.348 60.000 0.00 0.00 0.00 4.79
1948 3814 3.856521 CAGTACGATGAGCAAGAACTGAG 59.143 47.826 0.00 0.00 35.93 3.35
1966 3865 4.988540 CCAGTTTGACAGAATTCGTCAGTA 59.011 41.667 22.81 16.32 43.85 2.74
1989 3902 2.158449 CGTCCACATCTTCAGTTTGAGC 59.842 50.000 0.00 0.00 0.00 4.26
1997 3910 1.358877 CGCATTCGTCCACATCTTCA 58.641 50.000 0.00 0.00 0.00 3.02
2106 4019 0.249120 CAACCATCCTGCACGGTAGA 59.751 55.000 2.68 0.00 31.12 2.59
2132 4045 4.475944 ACGCTAATGTGAATTTGTCTTGC 58.524 39.130 0.00 0.00 0.00 4.01
2154 4067 4.041075 TGTTATACCTGTGACAGCCTTCAA 59.959 41.667 7.16 0.00 0.00 2.69
2162 4075 5.555966 TCAAAGCATGTTATACCTGTGACA 58.444 37.500 0.00 0.00 0.00 3.58
2173 4086 4.377021 ACTTGACGACTCAAAGCATGTTA 58.623 39.130 0.00 0.00 35.92 2.41
2183 4099 3.601435 TGGAACAAAACTTGACGACTCA 58.399 40.909 0.00 0.00 31.92 3.41
2202 4118 8.828644 TGAATTTCTGTCAAATTCATGTTTTGG 58.171 29.630 15.34 7.60 46.00 3.28
2373 4292 2.470983 AGAACCTCTGCTTTGCTCTC 57.529 50.000 0.00 0.00 0.00 3.20
2379 4298 1.070758 TGCTCGAAGAACCTCTGCTTT 59.929 47.619 0.00 0.00 34.09 3.51
2409 4328 3.714001 TGCTGCTGCAGGAGGAGG 61.714 66.667 32.87 12.32 45.31 4.30
2457 4376 3.935828 CCTCCTCGGAAAAGATCTTGAAC 59.064 47.826 9.17 3.67 33.16 3.18
2682 4601 2.413142 GCATCCCAGCAGCTTCACC 61.413 63.158 0.00 0.00 0.00 4.02
2694 4613 3.453070 GACCTCGAGGCAGCATCCC 62.453 68.421 31.56 6.66 39.32 3.85
2994 4913 1.671379 GGTTCCCTGGACAAGCGTC 60.671 63.158 0.00 0.00 41.80 5.19
3037 4956 2.666190 GAGCTGGCACGTGAGCAA 60.666 61.111 25.63 3.52 37.70 3.91
3138 5057 1.524482 GCTGGTGTCATCCTCCTCC 59.476 63.158 0.00 0.00 0.00 4.30
3183 5102 4.740822 CGGTGCCTTCCCCCTTGG 62.741 72.222 0.00 0.00 0.00 3.61
3193 5112 2.446848 CCATGATCTCCCGGTGCCT 61.447 63.158 0.00 0.00 0.00 4.75
3195 5114 1.227674 GTCCATGATCTCCCGGTGC 60.228 63.158 0.00 0.00 0.00 5.01
3431 5350 2.666207 GGATGGTGTGCCGGTACA 59.334 61.111 22.40 22.40 37.67 2.90
3432 5351 2.510691 CGGATGGTGTGCCGGTAC 60.511 66.667 16.68 16.68 43.67 3.34
3437 5356 2.040544 CAAGGACGGATGGTGTGCC 61.041 63.158 0.00 0.00 0.00 5.01
3438 5357 2.040544 CCAAGGACGGATGGTGTGC 61.041 63.158 0.00 0.00 31.84 4.57
3439 5358 4.301505 CCAAGGACGGATGGTGTG 57.698 61.111 0.00 0.00 31.84 3.82
3443 5362 1.377202 CCACACCAAGGACGGATGG 60.377 63.158 0.00 0.00 42.60 3.51
3444 5363 0.250727 AACCACACCAAGGACGGATG 60.251 55.000 0.00 0.00 0.00 3.51
3445 5364 0.476771 AAACCACACCAAGGACGGAT 59.523 50.000 0.00 0.00 0.00 4.18
3446 5365 0.464735 CAAACCACACCAAGGACGGA 60.465 55.000 0.00 0.00 0.00 4.69
3447 5366 2.029743 CAAACCACACCAAGGACGG 58.970 57.895 0.00 0.00 0.00 4.79
3448 5367 1.358759 GCAAACCACACCAAGGACG 59.641 57.895 0.00 0.00 0.00 4.79
3449 5368 1.098712 TCGCAAACCACACCAAGGAC 61.099 55.000 0.00 0.00 0.00 3.85
3450 5369 0.179004 ATCGCAAACCACACCAAGGA 60.179 50.000 0.00 0.00 0.00 3.36
3451 5370 0.673437 AATCGCAAACCACACCAAGG 59.327 50.000 0.00 0.00 0.00 3.61
3452 5371 2.126467 CAAATCGCAAACCACACCAAG 58.874 47.619 0.00 0.00 0.00 3.61
3453 5372 1.478510 ACAAATCGCAAACCACACCAA 59.521 42.857 0.00 0.00 0.00 3.67
3454 5373 1.107114 ACAAATCGCAAACCACACCA 58.893 45.000 0.00 0.00 0.00 4.17
3455 5374 1.202359 ACACAAATCGCAAACCACACC 60.202 47.619 0.00 0.00 0.00 4.16
3456 5375 2.202295 ACACAAATCGCAAACCACAC 57.798 45.000 0.00 0.00 0.00 3.82
3457 5376 2.949451 AACACAAATCGCAAACCACA 57.051 40.000 0.00 0.00 0.00 4.17
3458 5377 4.149747 CCAATAACACAAATCGCAAACCAC 59.850 41.667 0.00 0.00 0.00 4.16
3459 5378 4.038042 TCCAATAACACAAATCGCAAACCA 59.962 37.500 0.00 0.00 0.00 3.67
3460 5379 4.551388 TCCAATAACACAAATCGCAAACC 58.449 39.130 0.00 0.00 0.00 3.27
3461 5380 5.062058 CCATCCAATAACACAAATCGCAAAC 59.938 40.000 0.00 0.00 0.00 2.93
3462 5381 5.167121 CCATCCAATAACACAAATCGCAAA 58.833 37.500 0.00 0.00 0.00 3.68
3463 5382 4.742417 CCATCCAATAACACAAATCGCAA 58.258 39.130 0.00 0.00 0.00 4.85
3464 5383 3.428725 GCCATCCAATAACACAAATCGCA 60.429 43.478 0.00 0.00 0.00 5.10
3465 5384 3.115554 GCCATCCAATAACACAAATCGC 58.884 45.455 0.00 0.00 0.00 4.58
3466 5385 3.490761 GGGCCATCCAATAACACAAATCG 60.491 47.826 4.39 0.00 35.00 3.34
3467 5386 3.450457 TGGGCCATCCAATAACACAAATC 59.550 43.478 0.00 0.00 43.84 2.17
3468 5387 3.448934 TGGGCCATCCAATAACACAAAT 58.551 40.909 0.00 0.00 43.84 2.32
3469 5388 2.894731 TGGGCCATCCAATAACACAAA 58.105 42.857 0.00 0.00 43.84 2.83
3470 5389 2.612285 TGGGCCATCCAATAACACAA 57.388 45.000 0.00 0.00 43.84 3.33
3479 5398 1.607178 CAAAGCTGTGGGCCATCCA 60.607 57.895 10.70 2.38 44.79 3.41
3480 5399 0.323360 TACAAAGCTGTGGGCCATCC 60.323 55.000 10.70 0.00 43.05 3.51
3481 5400 1.678101 GATACAAAGCTGTGGGCCATC 59.322 52.381 10.70 4.10 43.05 3.51
3482 5401 1.285962 AGATACAAAGCTGTGGGCCAT 59.714 47.619 10.70 0.00 43.05 4.40
3483 5402 0.698238 AGATACAAAGCTGTGGGCCA 59.302 50.000 9.18 0.00 43.05 5.36
3484 5403 1.340017 TGAGATACAAAGCTGTGGGCC 60.340 52.381 9.18 0.00 43.05 5.80
3485 5404 1.740025 GTGAGATACAAAGCTGTGGGC 59.260 52.381 9.18 0.00 36.96 5.36
3486 5405 3.005554 CAGTGAGATACAAAGCTGTGGG 58.994 50.000 9.18 0.00 36.96 4.61
3487 5406 2.417933 GCAGTGAGATACAAAGCTGTGG 59.582 50.000 9.18 0.00 36.96 4.17
3488 5407 2.417933 GGCAGTGAGATACAAAGCTGTG 59.582 50.000 1.09 1.09 36.96 3.66
3489 5408 2.304180 AGGCAGTGAGATACAAAGCTGT 59.696 45.455 0.00 0.00 39.75 4.40
3490 5409 2.983229 AGGCAGTGAGATACAAAGCTG 58.017 47.619 0.00 0.00 33.19 4.24
3491 5410 3.604582 GAAGGCAGTGAGATACAAAGCT 58.395 45.455 0.00 0.00 33.19 3.74
3492 5411 2.680339 GGAAGGCAGTGAGATACAAAGC 59.320 50.000 0.00 0.00 0.00 3.51
3493 5412 3.942829 TGGAAGGCAGTGAGATACAAAG 58.057 45.455 0.00 0.00 0.00 2.77
3494 5413 4.072131 GTTGGAAGGCAGTGAGATACAAA 58.928 43.478 0.00 0.00 0.00 2.83
3495 5414 3.072330 TGTTGGAAGGCAGTGAGATACAA 59.928 43.478 0.00 0.00 0.00 2.41
3496 5415 2.637382 TGTTGGAAGGCAGTGAGATACA 59.363 45.455 0.00 0.00 0.00 2.29
3497 5416 3.055819 TCTGTTGGAAGGCAGTGAGATAC 60.056 47.826 0.00 0.00 34.57 2.24
3498 5417 3.173151 TCTGTTGGAAGGCAGTGAGATA 58.827 45.455 0.00 0.00 34.57 1.98
3499 5418 1.980765 TCTGTTGGAAGGCAGTGAGAT 59.019 47.619 0.00 0.00 34.57 2.75
3500 5419 1.345741 CTCTGTTGGAAGGCAGTGAGA 59.654 52.381 0.00 0.00 34.57 3.27
3501 5420 1.805869 CTCTGTTGGAAGGCAGTGAG 58.194 55.000 0.00 0.00 34.57 3.51
3502 5421 0.250467 GCTCTGTTGGAAGGCAGTGA 60.250 55.000 0.00 0.00 34.57 3.41
3503 5422 1.239968 GGCTCTGTTGGAAGGCAGTG 61.240 60.000 0.00 0.00 34.57 3.66
3504 5423 1.073897 GGCTCTGTTGGAAGGCAGT 59.926 57.895 0.00 0.00 34.57 4.40
3505 5424 1.676967 GGGCTCTGTTGGAAGGCAG 60.677 63.158 0.00 0.00 0.00 4.85
3506 5425 2.436109 GGGCTCTGTTGGAAGGCA 59.564 61.111 0.00 0.00 0.00 4.75
3507 5426 2.747855 CGGGCTCTGTTGGAAGGC 60.748 66.667 0.00 0.00 0.00 4.35
3508 5427 2.045926 CCGGGCTCTGTTGGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
3509 5428 1.376037 GACCGGGCTCTGTTGGAAG 60.376 63.158 6.32 0.00 0.00 3.46
3510 5429 1.841556 AGACCGGGCTCTGTTGGAA 60.842 57.895 2.12 0.00 0.00 3.53
3511 5430 2.203788 AGACCGGGCTCTGTTGGA 60.204 61.111 2.12 0.00 0.00 3.53
3512 5431 2.046892 CAGACCGGGCTCTGTTGG 60.047 66.667 7.01 0.00 34.10 3.77
3516 5435 0.824109 TGAATACAGACCGGGCTCTG 59.176 55.000 7.01 14.43 43.06 3.35
3517 5436 0.824759 GTGAATACAGACCGGGCTCT 59.175 55.000 7.01 0.00 0.00 4.09
3518 5437 0.824759 AGTGAATACAGACCGGGCTC 59.175 55.000 7.01 0.00 0.00 4.70
3519 5438 1.755380 GTAGTGAATACAGACCGGGCT 59.245 52.381 2.12 2.12 34.26 5.19
3520 5439 1.755380 AGTAGTGAATACAGACCGGGC 59.245 52.381 6.32 0.52 36.79 6.13
3521 5440 2.361438 GGAGTAGTGAATACAGACCGGG 59.639 54.545 6.32 0.00 36.79 5.73
3522 5441 2.361438 GGGAGTAGTGAATACAGACCGG 59.639 54.545 0.00 0.00 36.79 5.28
3523 5442 3.021695 TGGGAGTAGTGAATACAGACCG 58.978 50.000 0.00 0.00 36.79 4.79
3524 5443 4.677250 CGTTGGGAGTAGTGAATACAGACC 60.677 50.000 0.00 0.00 36.79 3.85
3525 5444 4.082354 ACGTTGGGAGTAGTGAATACAGAC 60.082 45.833 0.00 0.00 36.79 3.51
3526 5445 4.084287 ACGTTGGGAGTAGTGAATACAGA 58.916 43.478 0.00 0.00 36.79 3.41
3527 5446 4.082408 TGACGTTGGGAGTAGTGAATACAG 60.082 45.833 0.00 0.00 36.79 2.74
3528 5447 3.827876 TGACGTTGGGAGTAGTGAATACA 59.172 43.478 0.00 0.00 36.79 2.29
3529 5448 4.171754 GTGACGTTGGGAGTAGTGAATAC 58.828 47.826 0.00 0.00 34.30 1.89
3530 5449 3.119743 CGTGACGTTGGGAGTAGTGAATA 60.120 47.826 0.00 0.00 0.00 1.75
3531 5450 2.352421 CGTGACGTTGGGAGTAGTGAAT 60.352 50.000 0.00 0.00 0.00 2.57
3532 5451 1.001048 CGTGACGTTGGGAGTAGTGAA 60.001 52.381 0.00 0.00 0.00 3.18
3533 5452 0.594602 CGTGACGTTGGGAGTAGTGA 59.405 55.000 0.00 0.00 0.00 3.41
3534 5453 0.388134 CCGTGACGTTGGGAGTAGTG 60.388 60.000 3.64 0.00 0.00 2.74
3535 5454 0.825010 ACCGTGACGTTGGGAGTAGT 60.825 55.000 3.64 0.00 0.00 2.73
3536 5455 0.316204 AACCGTGACGTTGGGAGTAG 59.684 55.000 3.64 0.00 0.00 2.57
3544 5463 2.707392 CGCTTTTTAAACCGTGACGTT 58.293 42.857 3.64 0.00 0.00 3.99
3545 5464 1.595246 GCGCTTTTTAAACCGTGACGT 60.595 47.619 3.64 0.00 0.00 4.34
3558 5477 1.864565 AAATTTCCAAGCGCGCTTTT 58.135 40.000 41.48 29.49 33.42 2.27
3561 5480 1.418373 GAAAAATTTCCAAGCGCGCT 58.582 45.000 31.32 31.32 0.00 5.92
3596 5515 3.370104 ACCCATCTCACAACCAACAAAA 58.630 40.909 0.00 0.00 0.00 2.44
3598 5517 2.746279 ACCCATCTCACAACCAACAA 57.254 45.000 0.00 0.00 0.00 2.83
3600 5519 5.523438 TTTTAACCCATCTCACAACCAAC 57.477 39.130 0.00 0.00 0.00 3.77
3709 5628 6.616017 TGCGTGCATTTTCATAATAGACAAA 58.384 32.000 0.00 0.00 0.00 2.83
3722 5641 3.804873 ACGGTTAAATTTGCGTGCATTTT 59.195 34.783 0.00 2.25 0.00 1.82
3726 5645 1.759994 CACGGTTAAATTTGCGTGCA 58.240 45.000 0.00 0.00 0.00 4.57
3736 5655 4.273969 CACAGTTTAGAAGGCACGGTTAAA 59.726 41.667 0.00 0.00 0.00 1.52
3742 5661 1.455786 CGTCACAGTTTAGAAGGCACG 59.544 52.381 0.00 0.00 0.00 5.34
4233 6711 9.736023 ACAATTTCACTTGTTTCAAAGATAGAC 57.264 29.630 0.00 0.00 35.90 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.