Multiple sequence alignment - TraesCS5A01G273600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G273600 chr5A 100.000 4091 0 0 1 4091 482741329 482737239 0.000000e+00 7555
1 TraesCS5A01G273600 chr5A 96.988 166 5 0 3926 4091 592047420 592047585 3.110000e-71 279
2 TraesCS5A01G273600 chr5A 96.988 166 5 0 3926 4091 703792113 703792278 3.110000e-71 279
3 TraesCS5A01G273600 chr4A 98.572 3852 44 4 2 3848 615222362 615218517 0.000000e+00 6798
4 TraesCS5A01G273600 chr4A 97.590 166 4 0 3926 4091 259062134 259062299 6.690000e-73 285
5 TraesCS5A01G273600 chr2A 97.993 3837 60 8 2 3836 604627198 604623377 0.000000e+00 6643
6 TraesCS5A01G273600 chr5B 97.533 3851 75 11 2 3848 24175366 24179200 0.000000e+00 6567
7 TraesCS5A01G273600 chr3A 97.100 3862 87 16 2 3848 322330075 322326224 0.000000e+00 6488
8 TraesCS5A01G273600 chr3A 96.247 2611 85 4 470 3079 238190195 238187597 0.000000e+00 4266
9 TraesCS5A01G273600 chr3A 98.706 927 11 1 2923 3848 180127093 180126167 0.000000e+00 1644
10 TraesCS5A01G273600 chr3A 96.695 817 18 2 2 818 180127898 180127091 0.000000e+00 1351
11 TraesCS5A01G273600 chr3A 93.277 357 22 1 3380 3736 238187591 238187237 3.620000e-145 525
12 TraesCS5A01G273600 chr3A 97.561 164 4 0 3928 4091 146059746 146059583 8.660000e-72 281
13 TraesCS5A01G273600 chr3A 94.815 135 7 0 3716 3850 238186914 238186780 1.150000e-50 211
14 TraesCS5A01G273600 chr4D 94.298 1210 47 10 53 1247 118551781 118550579 0.000000e+00 1832
15 TraesCS5A01G273600 chr4D 95.385 455 17 4 3195 3646 118550572 118550119 0.000000e+00 721
16 TraesCS5A01G273600 chr4D 95.055 182 6 2 3670 3848 118550127 118549946 2.410000e-72 283
17 TraesCS5A01G273600 chr4B 92.276 1217 64 12 53 1247 332574401 332575609 0.000000e+00 1700
18 TraesCS5A01G273600 chr4B 94.714 454 21 3 3192 3643 332575613 332576065 0.000000e+00 702
19 TraesCS5A01G273600 chr4B 94.444 180 6 2 3670 3848 332576060 332576236 1.450000e-69 274
20 TraesCS5A01G273600 chr7A 98.598 927 12 1 2923 3848 577147431 577146505 0.000000e+00 1639
21 TraesCS5A01G273600 chr7A 96.695 817 18 2 2 818 577148236 577147429 0.000000e+00 1351
22 TraesCS5A01G273600 chr7A 97.590 166 4 0 3926 4091 655950478 655950313 6.690000e-73 285
23 TraesCS5A01G273600 chr7A 96.988 166 5 0 3926 4091 550553853 550553688 3.110000e-71 279
24 TraesCS5A01G273600 chrUn 98.191 387 6 1 2917 3303 480550969 480551354 0.000000e+00 675
25 TraesCS5A01G273600 chrUn 86.000 100 13 1 3838 3936 19739824 19739725 5.590000e-19 106
26 TraesCS5A01G273600 chr6A 98.780 164 2 0 3928 4091 416858323 416858486 4.000000e-75 292
27 TraesCS5A01G273600 chr6A 97.590 166 4 0 3926 4091 105895039 105895204 6.690000e-73 285
28 TraesCS5A01G273600 chr1A 96.951 164 5 0 3928 4091 391439697 391439860 4.030000e-70 276
29 TraesCS5A01G273600 chr5D 74.468 235 56 3 2327 2559 383173872 383174104 9.360000e-17 99
30 TraesCS5A01G273600 chr3D 74.779 226 53 3 2342 2565 562552093 562551870 9.360000e-17 99
31 TraesCS5A01G273600 chr1D 74.779 226 53 3 2342 2565 340512446 340512223 9.360000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G273600 chr5A 482737239 482741329 4090 True 7555.000000 7555 100.000000 1 4091 1 chr5A.!!$R1 4090
1 TraesCS5A01G273600 chr4A 615218517 615222362 3845 True 6798.000000 6798 98.572000 2 3848 1 chr4A.!!$R1 3846
2 TraesCS5A01G273600 chr2A 604623377 604627198 3821 True 6643.000000 6643 97.993000 2 3836 1 chr2A.!!$R1 3834
3 TraesCS5A01G273600 chr5B 24175366 24179200 3834 False 6567.000000 6567 97.533000 2 3848 1 chr5B.!!$F1 3846
4 TraesCS5A01G273600 chr3A 322326224 322330075 3851 True 6488.000000 6488 97.100000 2 3848 1 chr3A.!!$R2 3846
5 TraesCS5A01G273600 chr3A 238186780 238190195 3415 True 1667.333333 4266 94.779667 470 3850 3 chr3A.!!$R4 3380
6 TraesCS5A01G273600 chr3A 180126167 180127898 1731 True 1497.500000 1644 97.700500 2 3848 2 chr3A.!!$R3 3846
7 TraesCS5A01G273600 chr4D 118549946 118551781 1835 True 945.333333 1832 94.912667 53 3848 3 chr4D.!!$R1 3795
8 TraesCS5A01G273600 chr4B 332574401 332576236 1835 False 892.000000 1700 93.811333 53 3848 3 chr4B.!!$F1 3795
9 TraesCS5A01G273600 chr7A 577146505 577148236 1731 True 1495.000000 1639 97.646500 2 3848 2 chr7A.!!$R3 3846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 182 3.861797 CCCGCCGTCCTTAGCCAT 61.862 66.667 0.00 0.0 0.00 4.40 F
359 401 7.103641 ACTTTTTAGATTCGGTCATGAAGCTA 58.896 34.615 0.00 0.0 42.39 3.32 F
1266 1323 4.845580 CGCAAGAGGCCTGCGGAT 62.846 66.667 25.58 0.0 46.70 4.18 F
1378 1435 2.108952 AGAAAGGCTCTTGGTTCCATGT 59.891 45.455 0.00 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1074 1131 3.055530 TCCTAGGACGAACGACTACTTCT 60.056 47.826 7.62 0.0 0.00 2.85 R
1378 1435 5.960811 ACAGAGGATAGTCATGGAGAAGAAA 59.039 40.000 0.00 0.0 0.00 2.52 R
2970 3035 2.496070 CAAATCAGGGGTCAGACGACTA 59.504 50.000 0.00 0.0 42.21 2.59 R
3204 3269 7.765819 CCATGTACAATCTTAGATTGACTCACA 59.234 37.037 33.42 27.5 33.51 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 182 3.861797 CCCGCCGTCCTTAGCCAT 61.862 66.667 0.00 0.00 0.00 4.40
359 401 7.103641 ACTTTTTAGATTCGGTCATGAAGCTA 58.896 34.615 0.00 0.00 42.39 3.32
1074 1131 5.829924 ACAAGAGGAAGAAAATGAAGCAGAA 59.170 36.000 0.00 0.00 0.00 3.02
1266 1323 4.845580 CGCAAGAGGCCTGCGGAT 62.846 66.667 25.58 0.00 46.70 4.18
1378 1435 2.108952 AGAAAGGCTCTTGGTTCCATGT 59.891 45.455 0.00 0.00 0.00 3.21
1791 1850 5.637006 TTATTTATGTTCCAGCACCACAC 57.363 39.130 0.00 0.00 0.00 3.82
1868 1927 9.607333 TCTGGAAGATAAGGTATCTACATTGAT 57.393 33.333 0.00 0.00 44.44 2.57
1976 2035 4.915085 GCTTTTACATATGCGTTGTTGTGT 59.085 37.500 1.58 0.00 0.00 3.72
2029 2088 5.163754 GGTTTGGATGTGTTAGAAGAATCGG 60.164 44.000 0.00 0.00 0.00 4.18
2487 2551 4.884961 AGTACTGGTCTGATATCCAAGGT 58.115 43.478 0.00 0.00 33.06 3.50
2609 2673 6.211384 TGTGAGAGTAAAGTTCATGAGATCCA 59.789 38.462 0.00 0.00 0.00 3.41
2693 2757 2.224621 CCCAGTCTGTGTCCATTTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
2970 3035 2.792878 AGAGTACTTAGTGAGCACCGT 58.207 47.619 0.00 0.00 0.00 4.83
3193 3258 6.604171 TGGAGTTGCCTTGATGATATACAAT 58.396 36.000 0.00 0.00 37.63 2.71
3560 3628 4.024893 GTCAAGCGAGTCAGACAAATTTCA 60.025 41.667 2.66 0.00 0.00 2.69
3850 4264 2.122099 GGGTACGGGGATGGGGAT 60.122 66.667 0.00 0.00 0.00 3.85
3851 4265 2.526046 GGGTACGGGGATGGGGATG 61.526 68.421 0.00 0.00 0.00 3.51
3852 4266 2.526046 GGTACGGGGATGGGGATGG 61.526 68.421 0.00 0.00 0.00 3.51
3853 4267 2.122144 TACGGGGATGGGGATGGG 60.122 66.667 0.00 0.00 0.00 4.00
3854 4268 3.803311 TACGGGGATGGGGATGGGG 62.803 68.421 0.00 0.00 0.00 4.96
3856 4270 3.511610 GGGGATGGGGATGGGGTG 61.512 72.222 0.00 0.00 0.00 4.61
3857 4271 2.369568 GGGATGGGGATGGGGTGA 60.370 66.667 0.00 0.00 0.00 4.02
3858 4272 1.780066 GGGATGGGGATGGGGTGAT 60.780 63.158 0.00 0.00 0.00 3.06
3859 4273 1.462035 GGATGGGGATGGGGTGATG 59.538 63.158 0.00 0.00 0.00 3.07
3860 4274 1.462035 GATGGGGATGGGGTGATGG 59.538 63.158 0.00 0.00 0.00 3.51
3861 4275 2.085343 GATGGGGATGGGGTGATGGG 62.085 65.000 0.00 0.00 0.00 4.00
3862 4276 3.511610 GGGGATGGGGTGATGGGG 61.512 72.222 0.00 0.00 0.00 4.96
3863 4277 2.369568 GGGATGGGGTGATGGGGA 60.370 66.667 0.00 0.00 0.00 4.81
3864 4278 2.012210 GGGATGGGGTGATGGGGAA 61.012 63.158 0.00 0.00 0.00 3.97
3865 4279 1.371447 GGGATGGGGTGATGGGGAAT 61.371 60.000 0.00 0.00 0.00 3.01
3866 4280 1.455822 GGATGGGGTGATGGGGAATA 58.544 55.000 0.00 0.00 0.00 1.75
3867 4281 1.355720 GGATGGGGTGATGGGGAATAG 59.644 57.143 0.00 0.00 0.00 1.73
3868 4282 2.348472 GATGGGGTGATGGGGAATAGA 58.652 52.381 0.00 0.00 0.00 1.98
3869 4283 2.531177 TGGGGTGATGGGGAATAGAT 57.469 50.000 0.00 0.00 0.00 1.98
3870 4284 2.065007 TGGGGTGATGGGGAATAGATG 58.935 52.381 0.00 0.00 0.00 2.90
3871 4285 1.355720 GGGGTGATGGGGAATAGATGG 59.644 57.143 0.00 0.00 0.00 3.51
3872 4286 1.355720 GGGTGATGGGGAATAGATGGG 59.644 57.143 0.00 0.00 0.00 4.00
3873 4287 2.065799 GGTGATGGGGAATAGATGGGT 58.934 52.381 0.00 0.00 0.00 4.51
3874 4288 3.256704 GGTGATGGGGAATAGATGGGTA 58.743 50.000 0.00 0.00 0.00 3.69
3875 4289 3.009143 GGTGATGGGGAATAGATGGGTAC 59.991 52.174 0.00 0.00 0.00 3.34
3876 4290 2.903784 TGATGGGGAATAGATGGGTACG 59.096 50.000 0.00 0.00 0.00 3.67
3877 4291 1.724545 TGGGGAATAGATGGGTACGG 58.275 55.000 0.00 0.00 0.00 4.02
3878 4292 0.981943 GGGGAATAGATGGGTACGGG 59.018 60.000 0.00 0.00 0.00 5.28
3879 4293 0.981943 GGGAATAGATGGGTACGGGG 59.018 60.000 0.00 0.00 0.00 5.73
3880 4294 1.483686 GGGAATAGATGGGTACGGGGA 60.484 57.143 0.00 0.00 0.00 4.81
3881 4295 2.547990 GGAATAGATGGGTACGGGGAT 58.452 52.381 0.00 0.00 0.00 3.85
3882 4296 2.236395 GGAATAGATGGGTACGGGGATG 59.764 54.545 0.00 0.00 0.00 3.51
3883 4297 2.715763 ATAGATGGGTACGGGGATGT 57.284 50.000 0.00 0.00 0.00 3.06
3884 4298 2.482414 TAGATGGGTACGGGGATGTT 57.518 50.000 0.00 0.00 0.00 2.71
3885 4299 1.129058 AGATGGGTACGGGGATGTTC 58.871 55.000 0.00 0.00 0.00 3.18
3886 4300 1.129058 GATGGGTACGGGGATGTTCT 58.871 55.000 0.00 0.00 0.00 3.01
3887 4301 2.090943 AGATGGGTACGGGGATGTTCTA 60.091 50.000 0.00 0.00 0.00 2.10
3888 4302 2.482414 TGGGTACGGGGATGTTCTAT 57.518 50.000 0.00 0.00 0.00 1.98
3889 4303 2.043992 TGGGTACGGGGATGTTCTATG 58.956 52.381 0.00 0.00 0.00 2.23
3890 4304 1.346722 GGGTACGGGGATGTTCTATGG 59.653 57.143 0.00 0.00 0.00 2.74
3891 4305 1.346722 GGTACGGGGATGTTCTATGGG 59.653 57.143 0.00 0.00 0.00 4.00
3892 4306 2.044758 GTACGGGGATGTTCTATGGGT 58.955 52.381 0.00 0.00 0.00 4.51
3893 4307 1.129058 ACGGGGATGTTCTATGGGTC 58.871 55.000 0.00 0.00 0.00 4.46
3894 4308 0.396811 CGGGGATGTTCTATGGGTCC 59.603 60.000 0.00 0.00 0.00 4.46
3895 4309 0.771755 GGGGATGTTCTATGGGTCCC 59.228 60.000 0.00 0.00 46.30 4.46
3896 4310 0.771755 GGGATGTTCTATGGGTCCCC 59.228 60.000 5.13 0.00 42.19 4.81
3897 4311 0.396811 GGATGTTCTATGGGTCCCCG 59.603 60.000 5.13 0.00 39.42 5.73
3898 4312 1.129058 GATGTTCTATGGGTCCCCGT 58.871 55.000 5.13 4.08 39.42 5.28
3899 4313 2.322658 GATGTTCTATGGGTCCCCGTA 58.677 52.381 5.13 5.15 39.42 4.02
3919 4333 4.783418 GGATTGTCCCCATTGCCA 57.217 55.556 0.00 0.00 0.00 4.92
3920 4334 3.228939 GGATTGTCCCCATTGCCAT 57.771 52.632 0.00 0.00 0.00 4.40
3921 4335 1.043022 GGATTGTCCCCATTGCCATC 58.957 55.000 0.00 0.00 0.00 3.51
3922 4336 1.043022 GATTGTCCCCATTGCCATCC 58.957 55.000 0.00 0.00 0.00 3.51
3923 4337 0.398948 ATTGTCCCCATTGCCATCCC 60.399 55.000 0.00 0.00 0.00 3.85
3924 4338 1.517538 TTGTCCCCATTGCCATCCCT 61.518 55.000 0.00 0.00 0.00 4.20
3925 4339 0.625980 TGTCCCCATTGCCATCCCTA 60.626 55.000 0.00 0.00 0.00 3.53
3926 4340 0.111253 GTCCCCATTGCCATCCCTAG 59.889 60.000 0.00 0.00 0.00 3.02
3927 4341 1.228675 CCCCATTGCCATCCCTAGC 60.229 63.158 0.00 0.00 0.00 3.42
3928 4342 1.723128 CCCCATTGCCATCCCTAGCT 61.723 60.000 0.00 0.00 0.00 3.32
3929 4343 0.251077 CCCATTGCCATCCCTAGCTC 60.251 60.000 0.00 0.00 0.00 4.09
3930 4344 0.475475 CCATTGCCATCCCTAGCTCA 59.525 55.000 0.00 0.00 0.00 4.26
3931 4345 1.075050 CCATTGCCATCCCTAGCTCAT 59.925 52.381 0.00 0.00 0.00 2.90
3932 4346 2.434428 CATTGCCATCCCTAGCTCATC 58.566 52.381 0.00 0.00 0.00 2.92
3933 4347 1.510492 TTGCCATCCCTAGCTCATCA 58.490 50.000 0.00 0.00 0.00 3.07
3934 4348 1.054231 TGCCATCCCTAGCTCATCAG 58.946 55.000 0.00 0.00 0.00 2.90
3944 4358 2.772739 GCTCATCAGCATTGGTCGT 58.227 52.632 0.00 0.00 46.06 4.34
3945 4359 0.654683 GCTCATCAGCATTGGTCGTC 59.345 55.000 0.00 0.00 46.06 4.20
3946 4360 1.293924 CTCATCAGCATTGGTCGTCC 58.706 55.000 0.00 0.00 0.00 4.79
3947 4361 0.904649 TCATCAGCATTGGTCGTCCT 59.095 50.000 0.00 0.00 34.23 3.85
3948 4362 1.134699 TCATCAGCATTGGTCGTCCTC 60.135 52.381 0.00 0.00 34.23 3.71
3949 4363 1.134580 CATCAGCATTGGTCGTCCTCT 60.135 52.381 0.00 0.00 34.23 3.69
3950 4364 0.247460 TCAGCATTGGTCGTCCTCTG 59.753 55.000 0.00 3.01 34.23 3.35
3951 4365 0.247460 CAGCATTGGTCGTCCTCTGA 59.753 55.000 0.00 0.00 34.23 3.27
3952 4366 0.247736 AGCATTGGTCGTCCTCTGAC 59.752 55.000 0.00 0.00 38.18 3.51
3961 4375 1.796796 GTCCTCTGACGCCAATTGC 59.203 57.895 0.00 0.00 0.00 3.56
3962 4376 0.674895 GTCCTCTGACGCCAATTGCT 60.675 55.000 0.00 0.00 38.05 3.91
3963 4377 0.391661 TCCTCTGACGCCAATTGCTC 60.392 55.000 0.00 0.00 38.05 4.26
3964 4378 0.674581 CCTCTGACGCCAATTGCTCA 60.675 55.000 0.00 0.00 38.05 4.26
3965 4379 0.725686 CTCTGACGCCAATTGCTCAG 59.274 55.000 15.09 15.09 42.08 3.35
3966 4380 0.674581 TCTGACGCCAATTGCTCAGG 60.675 55.000 18.57 1.39 41.55 3.86
3967 4381 0.674581 CTGACGCCAATTGCTCAGGA 60.675 55.000 14.07 0.00 39.51 3.86
3968 4382 0.035152 TGACGCCAATTGCTCAGGAT 60.035 50.000 0.00 0.00 38.05 3.24
3969 4383 0.379669 GACGCCAATTGCTCAGGATG 59.620 55.000 0.00 0.00 38.05 3.51
3970 4384 1.065273 CGCCAATTGCTCAGGATGC 59.935 57.895 0.00 0.00 38.05 3.91
3971 4385 1.659622 CGCCAATTGCTCAGGATGCA 61.660 55.000 0.00 0.00 38.05 3.96
3972 4386 0.750850 GCCAATTGCTCAGGATGCAT 59.249 50.000 0.00 0.00 40.34 3.96
3973 4387 1.269621 GCCAATTGCTCAGGATGCATC 60.270 52.381 18.81 18.81 40.34 3.91
3974 4388 2.028876 CCAATTGCTCAGGATGCATCA 58.971 47.619 27.25 7.03 40.34 3.07
3975 4389 2.628178 CCAATTGCTCAGGATGCATCAT 59.372 45.455 27.25 18.99 40.34 2.45
3976 4390 3.552890 CCAATTGCTCAGGATGCATCATG 60.553 47.826 30.50 30.50 40.34 3.07
3977 4391 1.687563 TTGCTCAGGATGCATCATGG 58.312 50.000 33.80 25.93 38.95 3.66
3978 4392 0.179001 TGCTCAGGATGCATCATGGG 60.179 55.000 33.80 32.84 41.71 4.00
3979 4393 2.642425 CTCAGGATGCATCATGGGC 58.358 57.895 33.80 15.27 38.95 5.36
3980 4394 0.110678 CTCAGGATGCATCATGGGCT 59.889 55.000 33.80 17.16 38.95 5.19
3981 4395 0.179001 TCAGGATGCATCATGGGCTG 60.179 55.000 33.80 25.76 38.95 4.85
3982 4396 0.179001 CAGGATGCATCATGGGCTGA 60.179 55.000 29.14 0.00 35.15 4.26
3983 4397 0.778083 AGGATGCATCATGGGCTGAT 59.222 50.000 27.25 0.00 45.78 2.90
3984 4398 1.174783 GGATGCATCATGGGCTGATC 58.825 55.000 27.25 2.88 42.91 2.92
3985 4399 0.803117 GATGCATCATGGGCTGATCG 59.197 55.000 21.92 0.00 42.91 3.69
3986 4400 1.241990 ATGCATCATGGGCTGATCGC 61.242 55.000 10.83 1.55 42.91 4.58
3995 4409 2.747460 GCTGATCGCCCACAAGCA 60.747 61.111 0.00 0.00 0.00 3.91
3996 4410 3.044059 GCTGATCGCCCACAAGCAC 62.044 63.158 0.00 0.00 0.00 4.40
3997 4411 1.672030 CTGATCGCCCACAAGCACA 60.672 57.895 0.00 0.00 0.00 4.57
3998 4412 1.228094 TGATCGCCCACAAGCACAA 60.228 52.632 0.00 0.00 0.00 3.33
3999 4413 1.236616 TGATCGCCCACAAGCACAAG 61.237 55.000 0.00 0.00 0.00 3.16
4000 4414 0.955428 GATCGCCCACAAGCACAAGA 60.955 55.000 0.00 0.00 0.00 3.02
4001 4415 0.957395 ATCGCCCACAAGCACAAGAG 60.957 55.000 0.00 0.00 0.00 2.85
4002 4416 2.620112 CGCCCACAAGCACAAGAGG 61.620 63.158 0.00 0.00 0.00 3.69
4003 4417 1.228245 GCCCACAAGCACAAGAGGA 60.228 57.895 0.00 0.00 0.00 3.71
4004 4418 0.823356 GCCCACAAGCACAAGAGGAA 60.823 55.000 0.00 0.00 0.00 3.36
4005 4419 1.242076 CCCACAAGCACAAGAGGAAG 58.758 55.000 0.00 0.00 0.00 3.46
4006 4420 1.202806 CCCACAAGCACAAGAGGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
4007 4421 2.575532 CCACAAGCACAAGAGGAAGAA 58.424 47.619 0.00 0.00 0.00 2.52
4008 4422 2.551459 CCACAAGCACAAGAGGAAGAAG 59.449 50.000 0.00 0.00 0.00 2.85
4009 4423 3.470709 CACAAGCACAAGAGGAAGAAGA 58.529 45.455 0.00 0.00 0.00 2.87
4010 4424 3.497640 CACAAGCACAAGAGGAAGAAGAG 59.502 47.826 0.00 0.00 0.00 2.85
4011 4425 3.135530 ACAAGCACAAGAGGAAGAAGAGT 59.864 43.478 0.00 0.00 0.00 3.24
4012 4426 4.133078 CAAGCACAAGAGGAAGAAGAGTT 58.867 43.478 0.00 0.00 0.00 3.01
4013 4427 4.429854 AGCACAAGAGGAAGAAGAGTTT 57.570 40.909 0.00 0.00 0.00 2.66
4014 4428 4.133078 AGCACAAGAGGAAGAAGAGTTTG 58.867 43.478 0.00 0.00 0.00 2.93
4015 4429 4.130118 GCACAAGAGGAAGAAGAGTTTGA 58.870 43.478 0.00 0.00 0.00 2.69
4016 4430 4.213059 GCACAAGAGGAAGAAGAGTTTGAG 59.787 45.833 0.00 0.00 0.00 3.02
4017 4431 4.754114 CACAAGAGGAAGAAGAGTTTGAGG 59.246 45.833 0.00 0.00 0.00 3.86
4018 4432 3.694043 AGAGGAAGAAGAGTTTGAGGC 57.306 47.619 0.00 0.00 0.00 4.70
4019 4433 2.304470 AGAGGAAGAAGAGTTTGAGGCC 59.696 50.000 0.00 0.00 0.00 5.19
4020 4434 1.352687 AGGAAGAAGAGTTTGAGGCCC 59.647 52.381 0.00 0.00 0.00 5.80
4021 4435 1.073923 GGAAGAAGAGTTTGAGGCCCA 59.926 52.381 0.00 0.00 0.00 5.36
4022 4436 2.431454 GAAGAAGAGTTTGAGGCCCAG 58.569 52.381 0.00 0.00 0.00 4.45
4023 4437 0.037447 AGAAGAGTTTGAGGCCCAGC 59.963 55.000 0.00 0.00 0.00 4.85
4034 4448 2.116125 GCCCAGCCAACTCCAACT 59.884 61.111 0.00 0.00 0.00 3.16
4035 4449 1.973812 GCCCAGCCAACTCCAACTC 60.974 63.158 0.00 0.00 0.00 3.01
4036 4450 1.303643 CCCAGCCAACTCCAACTCC 60.304 63.158 0.00 0.00 0.00 3.85
4037 4451 1.455849 CCAGCCAACTCCAACTCCA 59.544 57.895 0.00 0.00 0.00 3.86
4038 4452 0.890996 CCAGCCAACTCCAACTCCAC 60.891 60.000 0.00 0.00 0.00 4.02
4039 4453 0.179020 CAGCCAACTCCAACTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
4040 4454 0.109342 AGCCAACTCCAACTCCACAG 59.891 55.000 0.00 0.00 0.00 3.66
4041 4455 0.890996 GCCAACTCCAACTCCACAGG 60.891 60.000 0.00 0.00 0.00 4.00
4042 4456 0.890996 CCAACTCCAACTCCACAGGC 60.891 60.000 0.00 0.00 0.00 4.85
4043 4457 1.071471 AACTCCAACTCCACAGGCG 59.929 57.895 0.00 0.00 0.00 5.52
4044 4458 1.696097 AACTCCAACTCCACAGGCGT 61.696 55.000 0.00 0.00 0.00 5.68
4045 4459 1.071471 CTCCAACTCCACAGGCGTT 59.929 57.895 0.00 0.00 30.03 4.84
4046 4460 1.227823 TCCAACTCCACAGGCGTTG 60.228 57.895 11.00 11.00 44.91 4.10
4047 4461 2.639286 CAACTCCACAGGCGTTGC 59.361 61.111 6.03 0.00 40.66 4.17
4058 4472 2.576847 GCGTTGCCAGCATTACGC 60.577 61.111 21.56 21.56 44.80 4.42
4059 4473 2.866750 CGTTGCCAGCATTACGCA 59.133 55.556 4.15 0.00 46.13 5.24
4060 4474 1.226101 CGTTGCCAGCATTACGCAG 60.226 57.895 4.15 0.00 46.13 5.18
4064 4478 3.909662 CCAGCATTACGCAGGCTT 58.090 55.556 0.00 0.00 46.13 4.35
4065 4479 1.723870 CCAGCATTACGCAGGCTTC 59.276 57.895 0.00 0.00 46.13 3.86
4066 4480 1.026182 CCAGCATTACGCAGGCTTCA 61.026 55.000 0.00 0.00 46.13 3.02
4067 4481 0.097674 CAGCATTACGCAGGCTTCAC 59.902 55.000 0.00 0.00 46.13 3.18
4068 4482 0.321564 AGCATTACGCAGGCTTCACA 60.322 50.000 0.00 0.00 46.13 3.58
4069 4483 0.521291 GCATTACGCAGGCTTCACAA 59.479 50.000 0.00 0.00 41.79 3.33
4070 4484 1.068610 GCATTACGCAGGCTTCACAAA 60.069 47.619 0.00 0.00 41.79 2.83
4071 4485 2.855180 CATTACGCAGGCTTCACAAAG 58.145 47.619 0.00 0.00 35.47 2.77
4072 4486 1.234821 TTACGCAGGCTTCACAAAGG 58.765 50.000 0.00 0.00 32.79 3.11
4073 4487 0.394938 TACGCAGGCTTCACAAAGGA 59.605 50.000 0.00 0.00 32.79 3.36
4074 4488 1.166531 ACGCAGGCTTCACAAAGGAC 61.167 55.000 0.00 0.00 32.79 3.85
4075 4489 1.856265 CGCAGGCTTCACAAAGGACC 61.856 60.000 0.00 0.00 32.79 4.46
4076 4490 0.823356 GCAGGCTTCACAAAGGACCA 60.823 55.000 0.00 0.00 32.79 4.02
4077 4491 1.691196 CAGGCTTCACAAAGGACCAA 58.309 50.000 0.00 0.00 32.79 3.67
4078 4492 1.610522 CAGGCTTCACAAAGGACCAAG 59.389 52.381 0.00 0.00 32.79 3.61
4079 4493 0.961753 GGCTTCACAAAGGACCAAGG 59.038 55.000 0.00 0.00 32.79 3.61
4080 4494 0.315251 GCTTCACAAAGGACCAAGGC 59.685 55.000 0.00 0.00 32.79 4.35
4081 4495 0.961753 CTTCACAAAGGACCAAGGCC 59.038 55.000 0.00 0.00 0.00 5.19
4082 4496 0.555769 TTCACAAAGGACCAAGGCCT 59.444 50.000 0.00 0.00 37.35 5.19
4083 4497 0.110486 TCACAAAGGACCAAGGCCTC 59.890 55.000 5.23 0.00 33.76 4.70
4084 4498 0.895559 CACAAAGGACCAAGGCCTCC 60.896 60.000 5.23 2.30 33.76 4.30
4085 4499 1.360393 ACAAAGGACCAAGGCCTCCA 61.360 55.000 5.23 0.00 33.76 3.86
4086 4500 0.610232 CAAAGGACCAAGGCCTCCAG 60.610 60.000 5.23 0.00 33.76 3.86
4087 4501 1.068352 AAAGGACCAAGGCCTCCAGT 61.068 55.000 5.23 3.30 33.76 4.00
4088 4502 1.492993 AAGGACCAAGGCCTCCAGTC 61.493 60.000 5.23 13.48 33.76 3.51
4089 4503 1.920835 GGACCAAGGCCTCCAGTCT 60.921 63.158 22.20 0.00 0.00 3.24
4090 4504 1.599576 GACCAAGGCCTCCAGTCTC 59.400 63.158 5.23 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181449 GGCTTCTCCTATCCCCTTCTTTC 60.181 52.174 0.00 0.00 0.00 2.62
185 207 2.507471 AGGGCCAATCAACTAGAAGGAG 59.493 50.000 6.18 0.00 0.00 3.69
1074 1131 3.055530 TCCTAGGACGAACGACTACTTCT 60.056 47.826 7.62 0.00 0.00 2.85
1378 1435 5.960811 ACAGAGGATAGTCATGGAGAAGAAA 59.039 40.000 0.00 0.00 0.00 2.52
1976 2035 7.933577 CCTTGACTATCAGGTTAAGAATATGCA 59.066 37.037 0.00 0.00 35.65 3.96
2029 2088 6.307155 CAACACTATCACGGATTTTCTCAAC 58.693 40.000 0.00 0.00 0.00 3.18
2487 2551 3.388024 GGAGTGTAGCAATACCCATGAGA 59.612 47.826 0.00 0.00 0.00 3.27
2609 2673 4.202202 GCATCAGGCTAGACACTAACTCAT 60.202 45.833 0.00 0.00 40.25 2.90
2693 2757 4.161565 ACATCACCTCGTTAGCTTCCATTA 59.838 41.667 0.00 0.00 0.00 1.90
2970 3035 2.496070 CAAATCAGGGGTCAGACGACTA 59.504 50.000 0.00 0.00 42.21 2.59
3204 3269 7.765819 CCATGTACAATCTTAGATTGACTCACA 59.234 37.037 33.42 27.50 33.51 3.58
3462 3528 5.191727 TCCAACATAAGGTTCCATGTGAT 57.808 39.130 0.00 0.00 37.72 3.06
3560 3628 7.238486 TGCAAACACCACATTTAATAAGGAT 57.762 32.000 2.51 0.00 0.00 3.24
3836 4250 2.122144 CCCATCCCCATCCCCGTA 60.122 66.667 0.00 0.00 0.00 4.02
3842 4256 1.462035 CCATCACCCCATCCCCATC 59.538 63.158 0.00 0.00 0.00 3.51
3850 4264 2.065007 CATCTATTCCCCATCACCCCA 58.935 52.381 0.00 0.00 0.00 4.96
3851 4265 1.355720 CCATCTATTCCCCATCACCCC 59.644 57.143 0.00 0.00 0.00 4.95
3852 4266 1.355720 CCCATCTATTCCCCATCACCC 59.644 57.143 0.00 0.00 0.00 4.61
3853 4267 2.065799 ACCCATCTATTCCCCATCACC 58.934 52.381 0.00 0.00 0.00 4.02
3854 4268 3.306780 CGTACCCATCTATTCCCCATCAC 60.307 52.174 0.00 0.00 0.00 3.06
3855 4269 2.903784 CGTACCCATCTATTCCCCATCA 59.096 50.000 0.00 0.00 0.00 3.07
3856 4270 2.236395 CCGTACCCATCTATTCCCCATC 59.764 54.545 0.00 0.00 0.00 3.51
3857 4271 2.266279 CCGTACCCATCTATTCCCCAT 58.734 52.381 0.00 0.00 0.00 4.00
3858 4272 1.724545 CCGTACCCATCTATTCCCCA 58.275 55.000 0.00 0.00 0.00 4.96
3859 4273 0.981943 CCCGTACCCATCTATTCCCC 59.018 60.000 0.00 0.00 0.00 4.81
3860 4274 0.981943 CCCCGTACCCATCTATTCCC 59.018 60.000 0.00 0.00 0.00 3.97
3861 4275 2.019807 TCCCCGTACCCATCTATTCC 57.980 55.000 0.00 0.00 0.00 3.01
3862 4276 2.904434 ACATCCCCGTACCCATCTATTC 59.096 50.000 0.00 0.00 0.00 1.75
3863 4277 2.986050 ACATCCCCGTACCCATCTATT 58.014 47.619 0.00 0.00 0.00 1.73
3864 4278 2.715763 ACATCCCCGTACCCATCTAT 57.284 50.000 0.00 0.00 0.00 1.98
3865 4279 2.090943 AGAACATCCCCGTACCCATCTA 60.091 50.000 0.00 0.00 0.00 1.98
3866 4280 1.129058 GAACATCCCCGTACCCATCT 58.871 55.000 0.00 0.00 0.00 2.90
3867 4281 1.129058 AGAACATCCCCGTACCCATC 58.871 55.000 0.00 0.00 0.00 3.51
3868 4282 2.482414 TAGAACATCCCCGTACCCAT 57.518 50.000 0.00 0.00 0.00 4.00
3869 4283 2.043992 CATAGAACATCCCCGTACCCA 58.956 52.381 0.00 0.00 0.00 4.51
3870 4284 1.346722 CCATAGAACATCCCCGTACCC 59.653 57.143 0.00 0.00 0.00 3.69
3871 4285 1.346722 CCCATAGAACATCCCCGTACC 59.653 57.143 0.00 0.00 0.00 3.34
3872 4286 2.036862 GACCCATAGAACATCCCCGTAC 59.963 54.545 0.00 0.00 0.00 3.67
3873 4287 2.322658 GACCCATAGAACATCCCCGTA 58.677 52.381 0.00 0.00 0.00 4.02
3874 4288 1.129058 GACCCATAGAACATCCCCGT 58.871 55.000 0.00 0.00 0.00 5.28
3875 4289 0.396811 GGACCCATAGAACATCCCCG 59.603 60.000 0.00 0.00 0.00 5.73
3876 4290 0.771755 GGGACCCATAGAACATCCCC 59.228 60.000 5.33 0.00 42.92 4.81
3907 4321 0.111253 CTAGGGATGGCAATGGGGAC 59.889 60.000 0.00 0.00 0.00 4.46
3908 4322 1.719063 GCTAGGGATGGCAATGGGGA 61.719 60.000 0.00 0.00 0.00 4.81
3909 4323 1.228675 GCTAGGGATGGCAATGGGG 60.229 63.158 0.00 0.00 0.00 4.96
3910 4324 0.251077 GAGCTAGGGATGGCAATGGG 60.251 60.000 0.00 0.00 0.00 4.00
3911 4325 0.475475 TGAGCTAGGGATGGCAATGG 59.525 55.000 0.00 0.00 0.00 3.16
3912 4326 2.224695 TGATGAGCTAGGGATGGCAATG 60.225 50.000 0.00 0.00 0.00 2.82
3913 4327 2.040012 CTGATGAGCTAGGGATGGCAAT 59.960 50.000 0.00 0.00 0.00 3.56
3914 4328 1.419012 CTGATGAGCTAGGGATGGCAA 59.581 52.381 0.00 0.00 0.00 4.52
3915 4329 1.054231 CTGATGAGCTAGGGATGGCA 58.946 55.000 0.00 0.00 0.00 4.92
3916 4330 0.321475 GCTGATGAGCTAGGGATGGC 60.321 60.000 0.00 0.00 42.52 4.40
3917 4331 1.054231 TGCTGATGAGCTAGGGATGG 58.946 55.000 5.57 0.00 46.39 3.51
3918 4332 3.075148 CAATGCTGATGAGCTAGGGATG 58.925 50.000 5.57 0.00 46.39 3.51
3919 4333 2.040012 CCAATGCTGATGAGCTAGGGAT 59.960 50.000 5.57 0.00 46.39 3.85
3920 4334 1.419012 CCAATGCTGATGAGCTAGGGA 59.581 52.381 5.57 0.00 46.39 4.20
3921 4335 1.142465 ACCAATGCTGATGAGCTAGGG 59.858 52.381 5.57 6.38 46.39 3.53
3922 4336 2.492012 GACCAATGCTGATGAGCTAGG 58.508 52.381 5.57 7.11 46.39 3.02
3923 4337 2.133553 CGACCAATGCTGATGAGCTAG 58.866 52.381 5.57 0.00 46.39 3.42
3924 4338 1.482182 ACGACCAATGCTGATGAGCTA 59.518 47.619 5.57 0.00 46.39 3.32
3925 4339 0.251354 ACGACCAATGCTGATGAGCT 59.749 50.000 5.57 0.00 46.39 4.09
3926 4340 0.654683 GACGACCAATGCTGATGAGC 59.345 55.000 0.00 0.00 46.44 4.26
3927 4341 1.134580 AGGACGACCAATGCTGATGAG 60.135 52.381 6.71 0.00 38.94 2.90
3928 4342 0.904649 AGGACGACCAATGCTGATGA 59.095 50.000 6.71 0.00 38.94 2.92
3929 4343 1.134580 AGAGGACGACCAATGCTGATG 60.135 52.381 6.71 0.00 38.94 3.07
3930 4344 1.134580 CAGAGGACGACCAATGCTGAT 60.135 52.381 6.71 0.00 38.94 2.90
3931 4345 0.247460 CAGAGGACGACCAATGCTGA 59.753 55.000 6.71 0.00 38.94 4.26
3932 4346 0.247460 TCAGAGGACGACCAATGCTG 59.753 55.000 6.71 8.02 38.94 4.41
3933 4347 0.247736 GTCAGAGGACGACCAATGCT 59.752 55.000 6.71 0.00 38.94 3.79
3934 4348 2.755929 GTCAGAGGACGACCAATGC 58.244 57.895 6.71 0.00 38.94 3.56
3943 4357 1.796796 GCAATTGGCGTCAGAGGAC 59.203 57.895 7.72 0.00 40.77 3.85
3944 4358 4.301505 GCAATTGGCGTCAGAGGA 57.698 55.556 7.72 0.00 0.00 3.71
3953 4367 0.750850 ATGCATCCTGAGCAATTGGC 59.249 50.000 7.72 0.00 46.27 4.52
3954 4368 2.028876 TGATGCATCCTGAGCAATTGG 58.971 47.619 23.67 0.00 46.27 3.16
3955 4369 3.552890 CCATGATGCATCCTGAGCAATTG 60.553 47.826 27.52 9.78 46.27 2.32
3956 4370 2.628178 CCATGATGCATCCTGAGCAATT 59.372 45.455 27.52 0.00 46.27 2.32
3957 4371 2.239400 CCATGATGCATCCTGAGCAAT 58.761 47.619 27.52 10.04 46.27 3.56
3958 4372 1.687563 CCATGATGCATCCTGAGCAA 58.312 50.000 27.52 8.17 46.27 3.91
3960 4374 1.524863 GCCCATGATGCATCCTGAGC 61.525 60.000 27.52 23.56 0.00 4.26
3961 4375 0.110678 AGCCCATGATGCATCCTGAG 59.889 55.000 27.52 18.65 0.00 3.35
3962 4376 0.179001 CAGCCCATGATGCATCCTGA 60.179 55.000 27.52 10.28 0.00 3.86
3963 4377 0.179001 TCAGCCCATGATGCATCCTG 60.179 55.000 23.67 22.35 31.12 3.86
3964 4378 2.237542 TCAGCCCATGATGCATCCT 58.762 52.632 23.67 11.64 31.12 3.24
3965 4379 4.914128 TCAGCCCATGATGCATCC 57.086 55.556 23.67 7.97 31.12 3.51
3979 4393 1.236616 TTGTGCTTGTGGGCGATCAG 61.237 55.000 0.00 0.00 34.52 2.90
3980 4394 1.228094 TTGTGCTTGTGGGCGATCA 60.228 52.632 0.00 0.00 34.52 2.92
3981 4395 0.955428 TCTTGTGCTTGTGGGCGATC 60.955 55.000 0.00 0.00 34.52 3.69
3982 4396 0.957395 CTCTTGTGCTTGTGGGCGAT 60.957 55.000 0.00 0.00 34.52 4.58
3983 4397 1.597854 CTCTTGTGCTTGTGGGCGA 60.598 57.895 0.00 0.00 34.52 5.54
3984 4398 2.620112 CCTCTTGTGCTTGTGGGCG 61.620 63.158 0.00 0.00 34.52 6.13
3985 4399 0.823356 TTCCTCTTGTGCTTGTGGGC 60.823 55.000 0.00 0.00 0.00 5.36
3986 4400 1.202806 TCTTCCTCTTGTGCTTGTGGG 60.203 52.381 0.00 0.00 0.00 4.61
3987 4401 2.260844 TCTTCCTCTTGTGCTTGTGG 57.739 50.000 0.00 0.00 0.00 4.17
3988 4402 3.470709 TCTTCTTCCTCTTGTGCTTGTG 58.529 45.455 0.00 0.00 0.00 3.33
3989 4403 3.135530 ACTCTTCTTCCTCTTGTGCTTGT 59.864 43.478 0.00 0.00 0.00 3.16
3990 4404 3.737850 ACTCTTCTTCCTCTTGTGCTTG 58.262 45.455 0.00 0.00 0.00 4.01
3991 4405 4.429854 AACTCTTCTTCCTCTTGTGCTT 57.570 40.909 0.00 0.00 0.00 3.91
3992 4406 4.133078 CAAACTCTTCTTCCTCTTGTGCT 58.867 43.478 0.00 0.00 0.00 4.40
3993 4407 4.130118 TCAAACTCTTCTTCCTCTTGTGC 58.870 43.478 0.00 0.00 0.00 4.57
3994 4408 4.754114 CCTCAAACTCTTCTTCCTCTTGTG 59.246 45.833 0.00 0.00 0.00 3.33
3995 4409 4.745172 GCCTCAAACTCTTCTTCCTCTTGT 60.745 45.833 0.00 0.00 0.00 3.16
3996 4410 3.750652 GCCTCAAACTCTTCTTCCTCTTG 59.249 47.826 0.00 0.00 0.00 3.02
3997 4411 3.244735 GGCCTCAAACTCTTCTTCCTCTT 60.245 47.826 0.00 0.00 0.00 2.85
3998 4412 2.304470 GGCCTCAAACTCTTCTTCCTCT 59.696 50.000 0.00 0.00 0.00 3.69
3999 4413 2.616765 GGGCCTCAAACTCTTCTTCCTC 60.617 54.545 0.84 0.00 0.00 3.71
4000 4414 1.352687 GGGCCTCAAACTCTTCTTCCT 59.647 52.381 0.84 0.00 0.00 3.36
4001 4415 1.073923 TGGGCCTCAAACTCTTCTTCC 59.926 52.381 4.53 0.00 0.00 3.46
4002 4416 2.431454 CTGGGCCTCAAACTCTTCTTC 58.569 52.381 4.53 0.00 0.00 2.87
4003 4417 1.546548 GCTGGGCCTCAAACTCTTCTT 60.547 52.381 4.53 0.00 0.00 2.52
4004 4418 0.037447 GCTGGGCCTCAAACTCTTCT 59.963 55.000 4.53 0.00 0.00 2.85
4005 4419 0.962855 GGCTGGGCCTCAAACTCTTC 60.963 60.000 4.53 0.00 46.69 2.87
4006 4420 1.075659 GGCTGGGCCTCAAACTCTT 59.924 57.895 4.53 0.00 46.69 2.85
4007 4421 2.759795 GGCTGGGCCTCAAACTCT 59.240 61.111 4.53 0.00 46.69 3.24
4017 4431 1.973812 GAGTTGGAGTTGGCTGGGC 60.974 63.158 0.00 0.00 0.00 5.36
4018 4432 1.303643 GGAGTTGGAGTTGGCTGGG 60.304 63.158 0.00 0.00 0.00 4.45
4019 4433 0.890996 GTGGAGTTGGAGTTGGCTGG 60.891 60.000 0.00 0.00 0.00 4.85
4020 4434 0.179020 TGTGGAGTTGGAGTTGGCTG 60.179 55.000 0.00 0.00 0.00 4.85
4021 4435 0.109342 CTGTGGAGTTGGAGTTGGCT 59.891 55.000 0.00 0.00 0.00 4.75
4022 4436 0.890996 CCTGTGGAGTTGGAGTTGGC 60.891 60.000 0.00 0.00 0.00 4.52
4023 4437 0.890996 GCCTGTGGAGTTGGAGTTGG 60.891 60.000 0.00 0.00 0.00 3.77
4024 4438 1.230635 CGCCTGTGGAGTTGGAGTTG 61.231 60.000 0.00 0.00 0.00 3.16
4025 4439 1.071471 CGCCTGTGGAGTTGGAGTT 59.929 57.895 0.00 0.00 0.00 3.01
4026 4440 1.696097 AACGCCTGTGGAGTTGGAGT 61.696 55.000 5.00 0.00 43.61 3.85
4027 4441 1.071471 AACGCCTGTGGAGTTGGAG 59.929 57.895 5.00 0.00 43.61 3.86
4028 4442 3.236391 AACGCCTGTGGAGTTGGA 58.764 55.556 5.00 0.00 43.61 3.53
4031 4445 2.594592 GGCAACGCCTGTGGAGTT 60.595 61.111 0.00 0.00 46.01 3.01
4041 4455 2.576847 GCGTAATGCTGGCAACGC 60.577 61.111 22.51 22.51 44.80 4.84
4042 4456 1.226101 CTGCGTAATGCTGGCAACG 60.226 57.895 13.31 13.31 46.63 4.10
4043 4457 4.771684 CTGCGTAATGCTGGCAAC 57.228 55.556 0.00 0.00 46.63 4.17
4048 4462 0.097674 GTGAAGCCTGCGTAATGCTG 59.902 55.000 0.00 0.00 46.63 4.41
4049 4463 0.321564 TGTGAAGCCTGCGTAATGCT 60.322 50.000 0.00 0.00 46.63 3.79
4050 4464 0.521291 TTGTGAAGCCTGCGTAATGC 59.479 50.000 0.00 0.00 46.70 3.56
4051 4465 2.414559 CCTTTGTGAAGCCTGCGTAATG 60.415 50.000 0.00 0.00 0.00 1.90
4052 4466 1.812571 CCTTTGTGAAGCCTGCGTAAT 59.187 47.619 0.00 0.00 0.00 1.89
4053 4467 1.202710 TCCTTTGTGAAGCCTGCGTAA 60.203 47.619 0.00 0.00 0.00 3.18
4054 4468 0.394938 TCCTTTGTGAAGCCTGCGTA 59.605 50.000 0.00 0.00 0.00 4.42
4055 4469 1.148273 TCCTTTGTGAAGCCTGCGT 59.852 52.632 0.00 0.00 0.00 5.24
4056 4470 1.576421 GTCCTTTGTGAAGCCTGCG 59.424 57.895 0.00 0.00 0.00 5.18
4057 4471 0.823356 TGGTCCTTTGTGAAGCCTGC 60.823 55.000 0.00 0.00 0.00 4.85
4058 4472 1.610522 CTTGGTCCTTTGTGAAGCCTG 59.389 52.381 0.00 0.00 0.00 4.85
4059 4473 1.479389 CCTTGGTCCTTTGTGAAGCCT 60.479 52.381 0.00 0.00 0.00 4.58
4060 4474 0.961753 CCTTGGTCCTTTGTGAAGCC 59.038 55.000 0.00 0.00 0.00 4.35
4061 4475 0.315251 GCCTTGGTCCTTTGTGAAGC 59.685 55.000 0.00 0.00 0.00 3.86
4062 4476 0.961753 GGCCTTGGTCCTTTGTGAAG 59.038 55.000 0.00 0.00 0.00 3.02
4063 4477 0.555769 AGGCCTTGGTCCTTTGTGAA 59.444 50.000 0.00 0.00 0.00 3.18
4064 4478 0.110486 GAGGCCTTGGTCCTTTGTGA 59.890 55.000 6.77 0.00 33.24 3.58
4065 4479 0.895559 GGAGGCCTTGGTCCTTTGTG 60.896 60.000 6.77 0.00 33.24 3.33
4066 4480 1.360393 TGGAGGCCTTGGTCCTTTGT 61.360 55.000 6.77 0.00 33.24 2.83
4067 4481 0.610232 CTGGAGGCCTTGGTCCTTTG 60.610 60.000 6.77 0.00 33.24 2.77
4068 4482 1.068352 ACTGGAGGCCTTGGTCCTTT 61.068 55.000 6.77 0.00 33.24 3.11
4069 4483 1.464198 ACTGGAGGCCTTGGTCCTT 60.464 57.895 6.77 0.00 33.24 3.36
4070 4484 1.920835 GACTGGAGGCCTTGGTCCT 60.921 63.158 6.77 3.00 36.46 3.85
4071 4485 1.904990 GAGACTGGAGGCCTTGGTCC 61.905 65.000 21.82 14.02 0.00 4.46
4072 4486 1.599576 GAGACTGGAGGCCTTGGTC 59.400 63.158 6.77 15.50 0.00 4.02
4073 4487 3.813150 GAGACTGGAGGCCTTGGT 58.187 61.111 6.77 6.28 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.