Multiple sequence alignment - TraesCS5A01G273200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G273200 chr5A 100.000 3199 0 0 1 3199 482486508 482483310 0.000000e+00 5908.0
1 TraesCS5A01G273200 chr5A 84.478 670 87 12 1488 2150 482467433 482466774 0.000000e+00 645.0
2 TraesCS5A01G273200 chr5A 86.835 395 50 2 5 398 535555510 535555117 1.050000e-119 440.0
3 TraesCS5A01G273200 chr5A 96.875 32 1 0 486 517 663616893 663616924 2.000000e-03 54.7
4 TraesCS5A01G273200 chr5B 85.569 1774 148 49 718 2456 458391927 458390227 0.000000e+00 1759.0
5 TraesCS5A01G273200 chr5D 85.634 891 82 21 706 1577 382004336 382003473 0.000000e+00 894.0
6 TraesCS5A01G273200 chr5D 88.359 524 42 8 1641 2150 382003380 382002862 2.110000e-171 612.0
7 TraesCS5A01G273200 chr5D 87.329 513 63 2 3 513 382036392 382035880 1.280000e-163 586.0
8 TraesCS5A01G273200 chr5D 82.993 147 12 9 508 651 382034306 382034170 1.560000e-23 121.0
9 TraesCS5A01G273200 chr7A 89.237 734 37 25 2453 3157 167846354 167845634 0.000000e+00 880.0
10 TraesCS5A01G273200 chr7A 86.318 402 52 3 3 403 150876299 150876698 4.900000e-118 435.0
11 TraesCS5A01G273200 chr3A 94.857 525 17 2 2632 3156 718349500 718350014 0.000000e+00 811.0
12 TraesCS5A01G273200 chr3A 93.143 175 10 1 2453 2625 718349271 718349445 4.100000e-64 255.0
13 TraesCS5A01G273200 chr1A 94.476 525 19 2 2632 3156 589647250 589647764 0.000000e+00 800.0
14 TraesCS5A01G273200 chr1A 89.855 414 40 2 3 414 418920207 418920620 6.080000e-147 531.0
15 TraesCS5A01G273200 chr1A 91.620 179 13 1 2449 2625 589647017 589647195 2.460000e-61 246.0
16 TraesCS5A01G273200 chr1A 89.908 109 11 0 3048 3156 460845594 460845702 1.200000e-29 141.0
17 TraesCS5A01G273200 chr1A 95.522 67 2 1 2453 2518 90175086 90175020 4.360000e-19 106.0
18 TraesCS5A01G273200 chr4A 93.404 470 21 2 2632 3101 78028344 78027885 0.000000e+00 688.0
19 TraesCS5A01G273200 chr4A 88.764 178 8 4 2451 2625 78028567 78028399 1.160000e-49 207.0
20 TraesCS5A01G273200 chr4A 87.586 145 16 2 2482 2625 731370155 731370298 1.970000e-37 167.0
21 TraesCS5A01G273200 chr4A 86.719 128 17 0 3029 3156 731370970 731371097 3.330000e-30 143.0
22 TraesCS5A01G273200 chr2A 89.183 416 43 2 3 416 593500486 593500071 4.730000e-143 518.0
23 TraesCS5A01G273200 chr2A 82.540 63 10 1 452 513 473645555 473645493 2.000000e-03 54.7
24 TraesCS5A01G273200 chr2B 88.725 408 43 2 3 409 489944085 489944490 2.220000e-136 496.0
25 TraesCS5A01G273200 chr2B 89.908 109 11 0 3048 3156 162015273 162015381 1.200000e-29 141.0
26 TraesCS5A01G273200 chr2B 94.286 35 2 0 483 517 195678111 195678145 2.000000e-03 54.7
27 TraesCS5A01G273200 chr3B 86.861 411 52 2 3 412 143641087 143641496 2.910000e-125 459.0
28 TraesCS5A01G273200 chr3B 81.188 404 45 12 2634 3036 793023613 793023986 2.410000e-76 296.0
29 TraesCS5A01G273200 chr3B 91.667 108 9 0 3049 3156 9362934 9362827 1.990000e-32 150.0
30 TraesCS5A01G273200 chr3B 89.815 108 11 0 3049 3156 27179796 27179903 4.300000e-29 139.0
31 TraesCS5A01G273200 chr1D 88.451 355 39 2 59 412 59819089 59818736 8.200000e-116 427.0
32 TraesCS5A01G273200 chr6D 84.223 412 64 1 3 413 456429090 456429501 1.790000e-107 399.0
33 TraesCS5A01G273200 chr6D 77.778 90 19 1 425 513 459353972 459354061 2.000000e-03 54.7
34 TraesCS5A01G273200 chr6B 92.661 109 8 0 3049 3157 688768947 688769055 1.190000e-34 158.0
35 TraesCS5A01G273200 chr3D 93.333 60 4 0 2634 2693 367393009 367392950 4.400000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G273200 chr5A 482483310 482486508 3198 True 5908.0 5908 100.0000 1 3199 1 chr5A.!!$R2 3198
1 TraesCS5A01G273200 chr5A 482466774 482467433 659 True 645.0 645 84.4780 1488 2150 1 chr5A.!!$R1 662
2 TraesCS5A01G273200 chr5B 458390227 458391927 1700 True 1759.0 1759 85.5690 718 2456 1 chr5B.!!$R1 1738
3 TraesCS5A01G273200 chr5D 382002862 382004336 1474 True 753.0 894 86.9965 706 2150 2 chr5D.!!$R1 1444
4 TraesCS5A01G273200 chr5D 382034170 382036392 2222 True 353.5 586 85.1610 3 651 2 chr5D.!!$R2 648
5 TraesCS5A01G273200 chr7A 167845634 167846354 720 True 880.0 880 89.2370 2453 3157 1 chr7A.!!$R1 704
6 TraesCS5A01G273200 chr3A 718349271 718350014 743 False 533.0 811 94.0000 2453 3156 2 chr3A.!!$F1 703
7 TraesCS5A01G273200 chr1A 589647017 589647764 747 False 523.0 800 93.0480 2449 3156 2 chr1A.!!$F3 707
8 TraesCS5A01G273200 chr4A 78027885 78028567 682 True 447.5 688 91.0840 2451 3101 2 chr4A.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 597 0.100682 TGCTGAAGATCGCCGTACTC 59.899 55.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2843 0.037512 CACACACCTCCTCTGCTCTG 60.038 60.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.302511 GGACACGTGCAGGATGGTT 60.303 57.895 17.22 0.00 35.86 3.67
26 27 2.187599 GACACGTGCAGGATGGTTGC 62.188 60.000 17.22 0.00 41.86 4.17
32 33 1.210155 GCAGGATGGTTGCGTTGTC 59.790 57.895 0.00 0.00 35.86 3.18
33 34 1.875963 CAGGATGGTTGCGTTGTCC 59.124 57.895 0.00 0.00 0.00 4.02
34 35 0.888736 CAGGATGGTTGCGTTGTCCA 60.889 55.000 0.00 0.00 35.64 4.02
81 82 2.639286 GCAAGGTTGGTGCGTCAG 59.361 61.111 0.00 0.00 31.20 3.51
90 91 2.433318 GTGCGTCAGGACCTGCTC 60.433 66.667 17.33 10.99 32.08 4.26
92 93 1.304134 TGCGTCAGGACCTGCTCTA 60.304 57.895 17.33 0.00 0.00 2.43
147 148 4.077184 TAAGTGCGCCAGACCGGG 62.077 66.667 6.32 0.00 34.06 5.73
164 165 4.743018 GGTGTGACCCAATCCCAG 57.257 61.111 0.00 0.00 30.04 4.45
169 170 1.638070 TGTGACCCAATCCCAGCATTA 59.362 47.619 0.00 0.00 0.00 1.90
174 175 1.707106 CCAATCCCAGCATTATGGCA 58.293 50.000 0.00 0.00 39.17 4.92
181 182 2.033372 CCAGCATTATGGCATGGTTGA 58.967 47.619 10.98 0.00 32.42 3.18
190 191 2.484062 GCATGGTTGAGGCATCCGG 61.484 63.158 0.00 0.00 0.00 5.14
206 207 4.310769 CATCCGGCTTTAGATGTTAGGAG 58.689 47.826 0.00 0.00 36.06 3.69
210 211 3.871594 CGGCTTTAGATGTTAGGAGTTGG 59.128 47.826 0.00 0.00 0.00 3.77
213 214 4.095036 GCTTTAGATGTTAGGAGTTGGTGC 59.905 45.833 0.00 0.00 0.00 5.01
225 226 2.290641 GAGTTGGTGCGATGTCTGTTTT 59.709 45.455 0.00 0.00 0.00 2.43
240 241 5.116882 GTCTGTTTTGTATTAGGCTCGGAT 58.883 41.667 0.00 0.00 0.00 4.18
246 247 6.554334 TTTGTATTAGGCTCGGATATTTGC 57.446 37.500 0.00 0.00 0.00 3.68
281 282 2.110188 AGGGGATAGGAATAGCGACAGA 59.890 50.000 0.00 0.00 0.00 3.41
306 307 2.819608 GTTGCTAAGATGGTGGCTTCAA 59.180 45.455 0.00 0.00 0.00 2.69
307 308 2.715046 TGCTAAGATGGTGGCTTCAAG 58.285 47.619 0.00 0.00 0.00 3.02
319 320 4.191544 GTGGCTTCAAGCATACTGATGTA 58.808 43.478 12.53 0.00 44.75 2.29
374 375 0.798159 TGACTGCATGCATCGTTCAC 59.202 50.000 22.97 5.63 0.00 3.18
375 376 0.798159 GACTGCATGCATCGTTCACA 59.202 50.000 22.97 0.00 0.00 3.58
403 405 2.306219 GGCAGGGGTATATCCTCCTTTC 59.694 54.545 1.07 0.00 37.41 2.62
444 447 3.886505 TGGTAAACATTTCCTGTGACCAC 59.113 43.478 7.82 0.00 44.17 4.16
466 469 2.889170 TAGGGTTGCACATGGCTTAA 57.111 45.000 0.00 0.00 45.15 1.85
476 479 6.825944 TGCACATGGCTTAACAAACTATAA 57.174 33.333 0.00 0.00 45.15 0.98
479 482 6.751888 GCACATGGCTTAACAAACTATAAAGG 59.248 38.462 0.00 0.00 40.25 3.11
480 483 6.751888 CACATGGCTTAACAAACTATAAAGGC 59.248 38.462 0.00 0.00 41.59 4.35
482 485 6.262193 TGGCTTAACAAACTATAAAGGCAC 57.738 37.500 5.64 0.00 44.65 5.01
490 493 6.281405 ACAAACTATAAAGGCACGAGGATAG 58.719 40.000 0.00 0.00 0.00 2.08
495 498 0.176680 AAGGCACGAGGATAGCACTG 59.823 55.000 0.00 0.00 0.00 3.66
522 535 3.942130 GGCTTAACCAAACTCATTGCT 57.058 42.857 0.00 0.00 37.73 3.91
531 544 4.082026 ACCAAACTCATTGCTAAGGATTGC 60.082 41.667 0.00 0.00 37.73 3.56
543 556 4.023365 GCTAAGGATTGCAACTCCATGATC 60.023 45.833 22.09 7.14 35.08 2.92
544 557 3.947612 AGGATTGCAACTCCATGATCT 57.052 42.857 22.09 5.47 35.08 2.75
545 558 4.246712 AGGATTGCAACTCCATGATCTT 57.753 40.909 22.09 1.95 35.08 2.40
546 559 3.952323 AGGATTGCAACTCCATGATCTTG 59.048 43.478 22.09 1.60 35.08 3.02
547 560 3.949754 GGATTGCAACTCCATGATCTTGA 59.050 43.478 17.78 0.00 32.72 3.02
548 561 4.400251 GGATTGCAACTCCATGATCTTGAA 59.600 41.667 17.78 0.00 32.72 2.69
549 562 5.105635 GGATTGCAACTCCATGATCTTGAAA 60.106 40.000 17.78 0.00 32.72 2.69
550 563 5.988310 TTGCAACTCCATGATCTTGAAAT 57.012 34.783 10.07 0.00 0.00 2.17
551 564 7.201848 GGATTGCAACTCCATGATCTTGAAATA 60.202 37.037 17.78 0.00 32.72 1.40
552 565 7.465353 TTGCAACTCCATGATCTTGAAATAA 57.535 32.000 10.07 0.00 0.00 1.40
553 566 7.465353 TGCAACTCCATGATCTTGAAATAAA 57.535 32.000 10.07 0.00 0.00 1.40
554 567 8.070034 TGCAACTCCATGATCTTGAAATAAAT 57.930 30.769 10.07 0.00 0.00 1.40
555 568 9.187996 TGCAACTCCATGATCTTGAAATAAATA 57.812 29.630 10.07 0.00 0.00 1.40
576 589 6.782298 ATATCAATCAACTGCTGAAGATCG 57.218 37.500 0.00 0.00 37.67 3.69
577 590 2.674852 TCAATCAACTGCTGAAGATCGC 59.325 45.455 0.00 0.00 37.67 4.58
578 591 1.661341 ATCAACTGCTGAAGATCGCC 58.339 50.000 0.00 0.00 37.67 5.54
579 592 0.737367 TCAACTGCTGAAGATCGCCG 60.737 55.000 0.00 0.00 0.00 6.46
580 593 1.016130 CAACTGCTGAAGATCGCCGT 61.016 55.000 0.00 0.00 0.00 5.68
581 594 0.530744 AACTGCTGAAGATCGCCGTA 59.469 50.000 0.00 0.00 0.00 4.02
582 595 0.179134 ACTGCTGAAGATCGCCGTAC 60.179 55.000 0.00 0.00 0.00 3.67
583 596 0.101399 CTGCTGAAGATCGCCGTACT 59.899 55.000 0.00 0.00 0.00 2.73
584 597 0.100682 TGCTGAAGATCGCCGTACTC 59.899 55.000 0.00 0.00 0.00 2.59
585 598 0.595310 GCTGAAGATCGCCGTACTCC 60.595 60.000 0.00 0.00 0.00 3.85
586 599 0.738975 CTGAAGATCGCCGTACTCCA 59.261 55.000 0.00 0.00 0.00 3.86
587 600 0.738975 TGAAGATCGCCGTACTCCAG 59.261 55.000 0.00 0.00 0.00 3.86
588 601 0.739561 GAAGATCGCCGTACTCCAGT 59.260 55.000 0.00 0.00 0.00 4.00
589 602 0.739561 AAGATCGCCGTACTCCAGTC 59.260 55.000 0.00 0.00 0.00 3.51
590 603 0.107116 AGATCGCCGTACTCCAGTCT 60.107 55.000 0.00 0.00 0.00 3.24
591 604 0.308376 GATCGCCGTACTCCAGTCTC 59.692 60.000 0.00 0.00 0.00 3.36
592 605 1.102222 ATCGCCGTACTCCAGTCTCC 61.102 60.000 0.00 0.00 0.00 3.71
593 606 1.749638 CGCCGTACTCCAGTCTCCT 60.750 63.158 0.00 0.00 0.00 3.69
594 607 1.716826 CGCCGTACTCCAGTCTCCTC 61.717 65.000 0.00 0.00 0.00 3.71
595 608 1.716826 GCCGTACTCCAGTCTCCTCG 61.717 65.000 0.00 0.00 0.00 4.63
596 609 0.392729 CCGTACTCCAGTCTCCTCGT 60.393 60.000 0.00 0.00 0.00 4.18
597 610 0.727970 CGTACTCCAGTCTCCTCGTG 59.272 60.000 0.00 0.00 0.00 4.35
598 611 1.675116 CGTACTCCAGTCTCCTCGTGA 60.675 57.143 0.00 0.00 0.00 4.35
599 612 2.434428 GTACTCCAGTCTCCTCGTGAA 58.566 52.381 0.00 0.00 0.00 3.18
600 613 1.540267 ACTCCAGTCTCCTCGTGAAG 58.460 55.000 0.00 0.00 0.00 3.02
601 614 0.172352 CTCCAGTCTCCTCGTGAAGC 59.828 60.000 0.00 0.00 0.00 3.86
602 615 1.216710 CCAGTCTCCTCGTGAAGCC 59.783 63.158 0.00 0.00 0.00 4.35
603 616 1.536073 CCAGTCTCCTCGTGAAGCCA 61.536 60.000 0.00 0.00 0.00 4.75
604 617 0.108898 CAGTCTCCTCGTGAAGCCAG 60.109 60.000 0.00 0.00 0.00 4.85
605 618 1.446966 GTCTCCTCGTGAAGCCAGC 60.447 63.158 0.00 0.00 0.00 4.85
606 619 2.125350 CTCCTCGTGAAGCCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
607 620 3.672295 CTCCTCGTGAAGCCAGCCC 62.672 68.421 0.00 0.00 0.00 5.19
624 637 4.444838 CGGTCGTGGCATCCGGAA 62.445 66.667 9.01 0.00 40.49 4.30
625 638 2.511600 GGTCGTGGCATCCGGAAG 60.512 66.667 9.01 4.82 0.00 3.46
626 639 2.577059 GTCGTGGCATCCGGAAGA 59.423 61.111 9.01 0.00 0.00 2.87
627 640 1.079405 GTCGTGGCATCCGGAAGAA 60.079 57.895 9.01 0.00 0.00 2.52
628 641 0.672401 GTCGTGGCATCCGGAAGAAA 60.672 55.000 9.01 0.00 0.00 2.52
629 642 0.672401 TCGTGGCATCCGGAAGAAAC 60.672 55.000 9.01 5.11 0.00 2.78
630 643 0.953471 CGTGGCATCCGGAAGAAACA 60.953 55.000 9.01 1.16 0.00 2.83
631 644 1.243902 GTGGCATCCGGAAGAAACAA 58.756 50.000 9.01 0.00 0.00 2.83
632 645 1.068541 GTGGCATCCGGAAGAAACAAC 60.069 52.381 9.01 0.00 0.00 3.32
633 646 1.243902 GGCATCCGGAAGAAACAACA 58.756 50.000 9.01 0.00 0.00 3.33
634 647 1.611491 GGCATCCGGAAGAAACAACAA 59.389 47.619 9.01 0.00 0.00 2.83
635 648 2.607038 GGCATCCGGAAGAAACAACAAC 60.607 50.000 9.01 0.00 0.00 3.32
636 649 2.916111 CATCCGGAAGAAACAACAACG 58.084 47.619 9.01 0.00 0.00 4.10
637 650 2.312722 TCCGGAAGAAACAACAACGA 57.687 45.000 0.00 0.00 0.00 3.85
638 651 2.841215 TCCGGAAGAAACAACAACGAT 58.159 42.857 0.00 0.00 0.00 3.73
639 652 2.546368 TCCGGAAGAAACAACAACGATG 59.454 45.455 0.00 0.00 0.00 3.84
640 653 2.289547 CCGGAAGAAACAACAACGATGT 59.710 45.455 0.00 0.00 43.14 3.06
641 654 3.288242 CGGAAGAAACAACAACGATGTG 58.712 45.455 0.00 0.00 40.46 3.21
642 655 3.042887 GGAAGAAACAACAACGATGTGC 58.957 45.455 0.00 0.00 40.46 4.57
643 656 3.488384 GGAAGAAACAACAACGATGTGCA 60.488 43.478 0.00 0.00 40.46 4.57
644 657 3.773860 AGAAACAACAACGATGTGCAA 57.226 38.095 0.00 0.00 40.46 4.08
645 658 4.305989 AGAAACAACAACGATGTGCAAT 57.694 36.364 0.00 0.00 40.46 3.56
646 659 4.290155 AGAAACAACAACGATGTGCAATC 58.710 39.130 0.00 0.00 40.46 2.67
647 660 3.706802 AACAACAACGATGTGCAATCA 57.293 38.095 0.00 0.00 40.46 2.57
648 661 3.921119 ACAACAACGATGTGCAATCAT 57.079 38.095 0.00 0.00 40.46 2.45
649 662 3.567530 ACAACAACGATGTGCAATCATG 58.432 40.909 0.00 0.00 40.46 3.07
662 675 2.575532 CAATCATGCAACCCTATCCGT 58.424 47.619 0.00 0.00 0.00 4.69
663 676 2.951642 CAATCATGCAACCCTATCCGTT 59.048 45.455 0.00 0.00 0.00 4.44
664 677 2.799126 TCATGCAACCCTATCCGTTT 57.201 45.000 0.00 0.00 0.00 3.60
665 678 2.639065 TCATGCAACCCTATCCGTTTC 58.361 47.619 0.00 0.00 0.00 2.78
666 679 2.238646 TCATGCAACCCTATCCGTTTCT 59.761 45.455 0.00 0.00 0.00 2.52
667 680 2.107950 TGCAACCCTATCCGTTTCTG 57.892 50.000 0.00 0.00 0.00 3.02
668 681 0.733150 GCAACCCTATCCGTTTCTGC 59.267 55.000 0.00 0.00 0.00 4.26
669 682 1.379527 CAACCCTATCCGTTTCTGCC 58.620 55.000 0.00 0.00 0.00 4.85
670 683 0.255033 AACCCTATCCGTTTCTGCCC 59.745 55.000 0.00 0.00 0.00 5.36
671 684 1.148498 CCCTATCCGTTTCTGCCCC 59.852 63.158 0.00 0.00 0.00 5.80
672 685 1.345715 CCCTATCCGTTTCTGCCCCT 61.346 60.000 0.00 0.00 0.00 4.79
673 686 0.546598 CCTATCCGTTTCTGCCCCTT 59.453 55.000 0.00 0.00 0.00 3.95
674 687 1.064685 CCTATCCGTTTCTGCCCCTTT 60.065 52.381 0.00 0.00 0.00 3.11
675 688 2.620627 CCTATCCGTTTCTGCCCCTTTT 60.621 50.000 0.00 0.00 0.00 2.27
676 689 2.009681 ATCCGTTTCTGCCCCTTTTT 57.990 45.000 0.00 0.00 0.00 1.94
696 709 2.196295 TTTTGGAAAAACGCTGTCCG 57.804 45.000 0.00 0.00 44.21 4.79
697 710 0.382515 TTTGGAAAAACGCTGTCCGG 59.617 50.000 0.00 0.00 42.52 5.14
698 711 0.748729 TTGGAAAAACGCTGTCCGGT 60.749 50.000 0.00 0.00 42.52 5.28
699 712 1.161563 TGGAAAAACGCTGTCCGGTC 61.162 55.000 0.00 0.00 42.52 4.79
700 713 0.883370 GGAAAAACGCTGTCCGGTCT 60.883 55.000 0.00 0.00 42.52 3.85
701 714 0.234884 GAAAAACGCTGTCCGGTCTG 59.765 55.000 0.00 0.28 42.52 3.51
702 715 1.164041 AAAAACGCTGTCCGGTCTGG 61.164 55.000 0.00 0.00 42.52 3.86
703 716 3.530910 AAACGCTGTCCGGTCTGGG 62.531 63.158 17.71 17.71 42.52 4.45
726 739 2.786495 CCCGATGGAGGAGTGACGG 61.786 68.421 0.00 0.00 40.03 4.79
737 750 2.036089 AGGAGTGACGGACAACTTCTTC 59.964 50.000 0.00 0.00 0.00 2.87
739 752 1.070289 AGTGACGGACAACTTCTTCCC 59.930 52.381 0.00 0.00 0.00 3.97
749 762 0.460311 ACTTCTTCCCGTAGCCATCG 59.540 55.000 0.00 0.00 0.00 3.84
758 771 1.447140 GTAGCCATCGGACGCAACA 60.447 57.895 2.19 0.00 0.00 3.33
788 801 5.389935 GCGAGAAATGGAAAATATCTAGGCG 60.390 44.000 0.00 0.00 0.00 5.52
962 979 3.592070 CAGCAGCAGCAGCAGAAT 58.408 55.556 12.92 0.00 45.49 2.40
963 980 1.429825 CAGCAGCAGCAGCAGAATC 59.570 57.895 12.92 0.00 45.49 2.52
971 988 2.401766 GCAGCAGAATCCCCACACG 61.402 63.158 0.00 0.00 0.00 4.49
972 989 1.296392 CAGCAGAATCCCCACACGA 59.704 57.895 0.00 0.00 0.00 4.35
973 990 1.021390 CAGCAGAATCCCCACACGAC 61.021 60.000 0.00 0.00 0.00 4.34
974 991 1.003839 GCAGAATCCCCACACGACA 60.004 57.895 0.00 0.00 0.00 4.35
979 996 0.762418 AATCCCCACACGACAGACAA 59.238 50.000 0.00 0.00 0.00 3.18
982 999 1.954146 CCCACACGACAGACAACCG 60.954 63.158 0.00 0.00 0.00 4.44
1029 1050 4.602995 AGTGATTAGCTTCTCGATTCGAC 58.397 43.478 4.29 0.00 0.00 4.20
1110 1131 2.124942 CTGAAGAGGAAGGGCGCC 60.125 66.667 21.18 21.18 0.00 6.53
1206 1227 2.031919 CTGGTACGTGCCTGCCAA 59.968 61.111 23.67 1.64 0.00 4.52
1210 1253 1.369091 GGTACGTGCCTGCCAATCTG 61.369 60.000 16.23 0.00 0.00 2.90
1211 1254 0.391130 GTACGTGCCTGCCAATCTGA 60.391 55.000 0.00 0.00 0.00 3.27
1219 1262 0.725686 CTGCCAATCTGACTTGCTCG 59.274 55.000 0.00 0.00 0.00 5.03
1233 1276 0.902984 TGCTCGCTGTTCTCCCCTTA 60.903 55.000 0.00 0.00 0.00 2.69
1240 1283 2.548920 GCTGTTCTCCCCTTATCGGATG 60.549 54.545 0.00 0.00 33.16 3.51
1271 1324 0.874175 GGCGGTGCTTTGTTTGGTTC 60.874 55.000 0.00 0.00 0.00 3.62
1303 1356 1.407656 GGACCCGGACATGATGCCTA 61.408 60.000 0.73 0.00 0.00 3.93
1584 1687 2.436115 GGTACGTGCCCTTGCCTC 60.436 66.667 12.25 0.00 36.33 4.70
1600 1780 3.311110 TCCCGTTGGAGCTTCGCT 61.311 61.111 0.00 0.00 43.88 4.93
1601 1781 2.358737 CCCGTTGGAGCTTCGCTT 60.359 61.111 0.00 0.00 39.88 4.68
1602 1782 2.391389 CCCGTTGGAGCTTCGCTTC 61.391 63.158 0.00 0.00 39.88 3.86
1604 1784 2.730672 CGTTGGAGCTTCGCTTCCG 61.731 63.158 0.00 0.00 39.88 4.30
1605 1785 2.047274 TTGGAGCTTCGCTTCCGG 60.047 61.111 0.00 0.00 39.88 5.14
1606 1786 3.605749 TTGGAGCTTCGCTTCCGGG 62.606 63.158 0.00 0.00 39.88 5.73
1629 1809 2.562298 GGGTTCAATTCCATTGCTGTGA 59.438 45.455 0.00 0.00 40.05 3.58
1634 1814 3.444742 TCAATTCCATTGCTGTGATGTCC 59.555 43.478 0.00 0.00 40.05 4.02
1635 1815 1.838112 TTCCATTGCTGTGATGTCCC 58.162 50.000 0.00 0.00 0.00 4.46
1636 1816 0.034186 TCCATTGCTGTGATGTCCCC 60.034 55.000 0.00 0.00 0.00 4.81
1637 1817 0.323633 CCATTGCTGTGATGTCCCCA 60.324 55.000 0.00 0.00 0.00 4.96
1660 1840 4.375272 ACTGCTTGGATCGATGTAATCTG 58.625 43.478 0.54 0.52 42.58 2.90
1664 1844 5.221501 TGCTTGGATCGATGTAATCTGATCA 60.222 40.000 0.54 0.00 45.95 2.92
1667 1847 3.856521 GGATCGATGTAATCTGATCAGCG 59.143 47.826 18.36 13.30 45.95 5.18
1669 1849 4.773323 TCGATGTAATCTGATCAGCGAT 57.227 40.909 18.36 4.70 43.14 4.58
1692 1872 1.151777 ATTCGATTACGCAGGCACGG 61.152 55.000 4.96 0.00 39.58 4.94
1693 1873 2.495366 TTCGATTACGCAGGCACGGT 62.495 55.000 4.96 0.00 39.58 4.83
1770 1950 0.738975 CTCGAACCTAGCGATGGTCA 59.261 55.000 0.00 0.00 36.69 4.02
1823 2003 2.108976 GCCGCGGAGATGATGGAA 59.891 61.111 33.48 0.00 0.00 3.53
1869 2049 1.915769 GAGGTGGAGCAGGACAGGT 60.916 63.158 0.00 0.00 0.00 4.00
1978 2170 4.452733 AAGCGCCTCCGGTGTAGC 62.453 66.667 2.29 6.85 45.59 3.58
1987 2183 0.035152 TCCGGTGTAGCGTTAGGAGA 60.035 55.000 0.00 0.00 0.00 3.71
1988 2184 0.813184 CCGGTGTAGCGTTAGGAGAA 59.187 55.000 0.00 0.00 0.00 2.87
1989 2185 1.203052 CCGGTGTAGCGTTAGGAGAAA 59.797 52.381 0.00 0.00 0.00 2.52
1990 2186 2.527100 CGGTGTAGCGTTAGGAGAAAG 58.473 52.381 0.00 0.00 0.00 2.62
2014 2284 1.958288 ATCCTTAGGTGCAGGTGTCT 58.042 50.000 0.00 0.00 32.59 3.41
2082 2658 2.267006 CATGGTGCGAGCAGAGGT 59.733 61.111 0.00 0.00 0.00 3.85
2156 2733 3.735029 ACGGTGGTCTCGTCTCGC 61.735 66.667 0.00 0.00 35.87 5.03
2157 2734 4.477975 CGGTGGTCTCGTCTCGCC 62.478 72.222 0.00 0.00 0.00 5.54
2158 2735 3.371063 GGTGGTCTCGTCTCGCCA 61.371 66.667 0.00 0.00 0.00 5.69
2163 2740 3.062466 TCTCGTCTCGCCAGTGGG 61.062 66.667 12.15 0.89 37.18 4.61
2164 2741 3.374402 CTCGTCTCGCCAGTGGGT 61.374 66.667 12.15 0.00 36.17 4.51
2167 2744 4.436998 GTCTCGCCAGTGGGTCCG 62.437 72.222 12.15 6.30 36.17 4.79
2169 2746 3.691342 CTCGCCAGTGGGTCCGAA 61.691 66.667 12.15 0.00 36.17 4.30
2170 2747 3.649277 CTCGCCAGTGGGTCCGAAG 62.649 68.421 12.15 2.60 36.17 3.79
2176 2753 1.071071 CCAGTGGGTCCGAAGTAACAA 59.929 52.381 0.00 0.00 0.00 2.83
2178 2755 3.000727 CAGTGGGTCCGAAGTAACAATC 58.999 50.000 0.00 0.00 0.00 2.67
2188 2765 3.852536 CGAAGTAACAATCGACAGGAGAC 59.147 47.826 0.00 0.00 41.43 3.36
2228 2807 1.340017 CCTTCCAAGGGCAAAGATCGA 60.340 52.381 0.00 0.00 42.66 3.59
2234 2813 0.749454 AGGGCAAAGATCGATGTGGC 60.749 55.000 0.54 10.37 35.91 5.01
2236 2815 1.475034 GGGCAAAGATCGATGTGGCTA 60.475 52.381 19.76 0.00 36.81 3.93
2248 2827 4.576053 TCGATGTGGCTATCTTCCATTTTG 59.424 41.667 0.00 0.00 35.81 2.44
2258 2837 6.295292 GCTATCTTCCATTTTGGTTTGGACTT 60.295 38.462 0.00 0.00 41.65 3.01
2259 2838 5.948742 TCTTCCATTTTGGTTTGGACTTT 57.051 34.783 0.00 0.00 41.65 2.66
2260 2839 5.669477 TCTTCCATTTTGGTTTGGACTTTG 58.331 37.500 0.00 0.00 41.65 2.77
2262 2841 4.033709 TCCATTTTGGTTTGGACTTTGGA 58.966 39.130 0.00 0.00 39.03 3.53
2263 2842 4.126437 CCATTTTGGTTTGGACTTTGGAC 58.874 43.478 0.00 0.00 34.81 4.02
2264 2843 3.897141 TTTTGGTTTGGACTTTGGACC 57.103 42.857 0.00 0.00 0.00 4.46
2268 2847 2.230660 GGTTTGGACTTTGGACCAGAG 58.769 52.381 10.46 10.46 38.38 3.35
2269 2848 1.609072 GTTTGGACTTTGGACCAGAGC 59.391 52.381 11.90 5.13 38.38 4.09
2281 2909 1.190833 ACCAGAGCAGAGGAGGTGTG 61.191 60.000 0.00 0.00 0.00 3.82
2284 2912 1.375268 GAGCAGAGGAGGTGTGTGC 60.375 63.158 0.00 0.00 34.46 4.57
2337 2965 4.490743 TCTATCGTTTGTTCAATCGAGCA 58.509 39.130 18.65 11.21 35.85 4.26
2342 2970 3.609175 CGTTTGTTCAATCGAGCACCAAT 60.609 43.478 9.48 0.00 31.36 3.16
2363 2991 6.475402 CCAATGTCACAGAAAAGTTTACCAAC 59.525 38.462 0.00 0.00 0.00 3.77
2383 3011 6.098695 ACCAACAAAGTAGTCCTAGTTGTGTA 59.901 38.462 0.00 0.00 37.50 2.90
2389 3017 8.495949 CAAAGTAGTCCTAGTTGTGTACATTTG 58.504 37.037 0.00 0.00 0.00 2.32
2418 3046 2.421775 TCTGTTTTTCAAGTGCTCGCAA 59.578 40.909 0.00 0.00 0.00 4.85
2442 3070 4.385825 TGAGAATTTTCTAGCACCAACGT 58.614 39.130 0.00 0.00 37.73 3.99
2443 3071 4.451096 TGAGAATTTTCTAGCACCAACGTC 59.549 41.667 0.00 0.00 37.73 4.34
2448 3076 0.520404 TCTAGCACCAACGTCGAGAC 59.480 55.000 0.00 0.00 0.00 3.36
2492 3120 3.448686 CAGAATTCTCTGTATCGCCGTT 58.551 45.455 4.57 0.00 43.64 4.44
2517 3145 1.795177 GTCGCCGATACGCCGATAC 60.795 63.158 0.33 0.00 33.24 2.24
2518 3146 2.253051 TCGCCGATACGCCGATACA 61.253 57.895 0.00 0.00 0.00 2.29
2522 3158 0.031043 CCGATACGCCGATACACCAA 59.969 55.000 0.00 0.00 0.00 3.67
2537 3173 7.033791 CGATACACCAAATACGGCTTAGATAT 58.966 38.462 0.00 0.00 0.00 1.63
2559 3195 2.907042 GGGTATCCCAGAAGTATCCCAG 59.093 54.545 0.00 0.00 44.65 4.45
2746 3432 2.825836 CCGCCCCAACTGCTGATC 60.826 66.667 0.00 0.00 0.00 2.92
2747 3433 2.270205 CGCCCCAACTGCTGATCT 59.730 61.111 0.00 0.00 0.00 2.75
2748 3434 2.110967 CGCCCCAACTGCTGATCTG 61.111 63.158 0.00 0.00 0.00 2.90
2749 3435 2.413142 GCCCCAACTGCTGATCTGC 61.413 63.158 16.98 16.98 0.00 4.26
2796 3482 4.235762 TGCTATTCTCCGCCGCCC 62.236 66.667 0.00 0.00 0.00 6.13
2856 3542 4.021456 ACTGATGTGTAGTTGATCCGTTGA 60.021 41.667 0.00 0.00 0.00 3.18
2899 3585 1.675714 CCGCTGGCTTCTGTTGATGTA 60.676 52.381 0.00 0.00 0.00 2.29
2900 3586 1.662629 CGCTGGCTTCTGTTGATGTAG 59.337 52.381 0.00 0.00 0.00 2.74
3013 3871 6.373216 TGCTAATGTAGTAATGTTGGTTGGAC 59.627 38.462 0.00 0.00 0.00 4.02
3078 3936 2.602878 CTTGCCGTATCGCCGTATTAT 58.397 47.619 0.00 0.00 0.00 1.28
3080 3938 3.846423 TGCCGTATCGCCGTATTATTA 57.154 42.857 0.00 0.00 0.00 0.98
3114 3972 0.729116 CGTATCCCGTATCGCCGTAT 59.271 55.000 0.00 0.00 0.00 3.06
3158 4023 2.351835 CCGTATCGGTGCTTCATAGGAG 60.352 54.545 0.00 0.00 42.73 3.69
3163 4028 2.166459 TCGGTGCTTCATAGGAGACAAG 59.834 50.000 0.00 0.00 0.00 3.16
3164 4029 2.093973 CGGTGCTTCATAGGAGACAAGT 60.094 50.000 0.00 0.00 0.00 3.16
3167 4032 4.160626 GGTGCTTCATAGGAGACAAGTACT 59.839 45.833 0.00 0.00 33.44 2.73
3168 4033 5.344884 GTGCTTCATAGGAGACAAGTACTC 58.655 45.833 0.00 0.00 31.10 2.59
3174 4039 2.943449 GGAGACAAGTACTCCCTTCG 57.057 55.000 0.00 0.00 45.64 3.79
3177 4042 3.447944 GGAGACAAGTACTCCCTTCGATT 59.552 47.826 0.00 0.00 45.64 3.34
3179 4044 5.450274 GGAGACAAGTACTCCCTTCGATTAC 60.450 48.000 0.00 0.00 45.64 1.89
3180 4045 5.014858 AGACAAGTACTCCCTTCGATTACA 58.985 41.667 0.00 0.00 30.80 2.41
3181 4046 5.479375 AGACAAGTACTCCCTTCGATTACAA 59.521 40.000 0.00 0.00 30.80 2.41
3182 4047 6.014840 AGACAAGTACTCCCTTCGATTACAAA 60.015 38.462 0.00 0.00 30.80 2.83
3183 4048 6.708285 ACAAGTACTCCCTTCGATTACAAAT 58.292 36.000 0.00 0.00 30.80 2.32
3184 4049 7.844009 ACAAGTACTCCCTTCGATTACAAATA 58.156 34.615 0.00 0.00 30.80 1.40
3185 4050 8.483758 ACAAGTACTCCCTTCGATTACAAATAT 58.516 33.333 0.00 0.00 30.80 1.28
3186 4051 9.326413 CAAGTACTCCCTTCGATTACAAATATT 57.674 33.333 0.00 0.00 30.80 1.28
3187 4052 9.543783 AAGTACTCCCTTCGATTACAAATATTC 57.456 33.333 0.00 0.00 30.80 1.75
3188 4053 8.148999 AGTACTCCCTTCGATTACAAATATTCC 58.851 37.037 0.00 0.00 30.80 3.01
3189 4054 6.296803 ACTCCCTTCGATTACAAATATTCCC 58.703 40.000 0.00 0.00 0.00 3.97
3190 4055 6.101296 ACTCCCTTCGATTACAAATATTCCCT 59.899 38.462 0.00 0.00 0.00 4.20
3191 4056 6.531021 TCCCTTCGATTACAAATATTCCCTC 58.469 40.000 0.00 0.00 0.00 4.30
3192 4057 5.705905 CCCTTCGATTACAAATATTCCCTCC 59.294 44.000 0.00 0.00 0.00 4.30
3193 4058 5.408604 CCTTCGATTACAAATATTCCCTCCG 59.591 44.000 0.00 0.00 0.00 4.63
3194 4059 5.540400 TCGATTACAAATATTCCCTCCGT 57.460 39.130 0.00 0.00 0.00 4.69
3195 4060 5.920903 TCGATTACAAATATTCCCTCCGTT 58.079 37.500 0.00 0.00 0.00 4.44
3196 4061 5.987347 TCGATTACAAATATTCCCTCCGTTC 59.013 40.000 0.00 0.00 0.00 3.95
3197 4062 5.178809 CGATTACAAATATTCCCTCCGTTCC 59.821 44.000 0.00 0.00 0.00 3.62
3198 4063 5.438698 TTACAAATATTCCCTCCGTTCCA 57.561 39.130 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.490759 CTGCACGTGTCCATCCGC 61.491 66.667 18.38 0.00 0.00 5.54
1 2 2.578163 ATCCTGCACGTGTCCATCCG 62.578 60.000 18.38 0.00 0.00 4.18
13 14 1.514678 GACAACGCAACCATCCTGCA 61.515 55.000 0.00 0.00 39.91 4.41
48 49 1.558167 TTGCCAGGCCTACCATCGAA 61.558 55.000 3.98 0.00 39.06 3.71
81 82 2.373335 TCCATCTCTAGAGCAGGTCC 57.627 55.000 22.15 0.00 0.00 4.46
88 89 4.039004 CCAACCACTGATCCATCTCTAGAG 59.961 50.000 13.98 13.98 0.00 2.43
90 91 3.708631 ACCAACCACTGATCCATCTCTAG 59.291 47.826 0.00 0.00 0.00 2.43
92 93 2.238144 CACCAACCACTGATCCATCTCT 59.762 50.000 0.00 0.00 0.00 3.10
123 124 2.047274 TGGCGCACTTACAGAGGC 60.047 61.111 10.83 0.00 0.00 4.70
127 128 2.094659 CGGTCTGGCGCACTTACAG 61.095 63.158 10.83 7.04 0.00 2.74
130 131 4.077184 CCCGGTCTGGCGCACTTA 62.077 66.667 10.83 0.00 35.87 2.24
147 148 1.678970 GCTGGGATTGGGTCACACC 60.679 63.158 0.00 0.00 34.61 4.16
162 163 2.035449 CCTCAACCATGCCATAATGCTG 59.965 50.000 0.00 0.00 0.00 4.41
163 164 2.313317 CCTCAACCATGCCATAATGCT 58.687 47.619 0.00 0.00 0.00 3.79
164 165 1.269936 GCCTCAACCATGCCATAATGC 60.270 52.381 0.00 0.00 0.00 3.56
169 170 0.757935 GGATGCCTCAACCATGCCAT 60.758 55.000 0.00 0.00 0.00 4.40
174 175 2.124151 GCCGGATGCCTCAACCAT 60.124 61.111 5.05 0.00 0.00 3.55
181 182 0.839946 ACATCTAAAGCCGGATGCCT 59.160 50.000 5.05 0.00 41.93 4.75
190 191 4.095036 GCACCAACTCCTAACATCTAAAGC 59.905 45.833 0.00 0.00 0.00 3.51
206 207 2.223479 ACAAAACAGACATCGCACCAAC 60.223 45.455 0.00 0.00 0.00 3.77
210 211 5.560148 CCTAATACAAAACAGACATCGCAC 58.440 41.667 0.00 0.00 0.00 5.34
213 214 5.276395 CGAGCCTAATACAAAACAGACATCG 60.276 44.000 0.00 0.00 0.00 3.84
225 226 4.575885 GGCAAATATCCGAGCCTAATACA 58.424 43.478 0.00 0.00 43.70 2.29
240 241 3.364549 CTTGATGAAGGGGTGGCAAATA 58.635 45.455 0.00 0.00 0.00 1.40
268 269 2.030946 GCAACACATCTGTCGCTATTCC 59.969 50.000 0.00 0.00 0.00 3.01
270 271 2.977914 AGCAACACATCTGTCGCTATT 58.022 42.857 0.00 0.00 0.00 1.73
271 272 2.680312 AGCAACACATCTGTCGCTAT 57.320 45.000 0.00 0.00 0.00 2.97
281 282 2.094675 GCCACCATCTTAGCAACACAT 58.905 47.619 0.00 0.00 0.00 3.21
306 307 9.547753 CCTTACAAAGTAATACATCAGTATGCT 57.452 33.333 0.00 0.00 40.00 3.79
307 308 9.326413 ACCTTACAAAGTAATACATCAGTATGC 57.674 33.333 0.00 0.00 40.00 3.14
357 358 1.131693 CATGTGAACGATGCATGCAGT 59.868 47.619 26.69 16.50 34.47 4.40
374 375 5.677621 AGGATATACCCCTGCCTATGCATG 61.678 50.000 10.16 0.00 42.97 4.06
375 376 3.571941 AGGATATACCCCTGCCTATGCAT 60.572 47.826 3.79 3.79 42.97 3.96
378 379 3.041946 GGAGGATATACCCCTGCCTATG 58.958 54.545 0.53 0.00 40.05 2.23
380 381 2.379222 AGGAGGATATACCCCTGCCTA 58.621 52.381 9.86 0.00 42.33 3.93
422 425 3.886505 GTGGTCACAGGAAATGTTTACCA 59.113 43.478 7.54 7.54 46.21 3.25
429 432 3.696051 CCCTATTGTGGTCACAGGAAATG 59.304 47.826 8.78 0.00 42.94 2.32
430 433 3.333680 ACCCTATTGTGGTCACAGGAAAT 59.666 43.478 12.20 3.54 42.94 2.17
436 439 1.143889 TGCAACCCTATTGTGGTCACA 59.856 47.619 0.00 0.00 39.98 3.58
444 447 1.477553 AGCCATGTGCAACCCTATTG 58.522 50.000 8.58 0.00 44.83 1.90
466 469 4.546829 TCCTCGTGCCTTTATAGTTTGT 57.453 40.909 0.00 0.00 0.00 2.83
476 479 0.176680 CAGTGCTATCCTCGTGCCTT 59.823 55.000 0.00 0.00 0.00 4.35
479 482 2.233654 CGCAGTGCTATCCTCGTGC 61.234 63.158 14.33 0.00 0.00 5.34
480 483 1.139734 ACGCAGTGCTATCCTCGTG 59.860 57.895 14.33 0.00 42.51 4.35
522 535 5.378230 AGATCATGGAGTTGCAATCCTTA 57.622 39.130 21.12 11.60 37.74 2.69
550 563 8.768019 CGATCTTCAGCAGTTGATTGATATTTA 58.232 33.333 4.15 0.00 35.27 1.40
551 564 7.637229 CGATCTTCAGCAGTTGATTGATATTT 58.363 34.615 4.15 0.00 35.27 1.40
552 565 6.293298 GCGATCTTCAGCAGTTGATTGATATT 60.293 38.462 0.00 0.00 35.27 1.28
553 566 5.178996 GCGATCTTCAGCAGTTGATTGATAT 59.821 40.000 0.00 0.00 35.27 1.63
554 567 4.509230 GCGATCTTCAGCAGTTGATTGATA 59.491 41.667 0.00 0.00 35.27 2.15
555 568 3.311871 GCGATCTTCAGCAGTTGATTGAT 59.688 43.478 0.00 3.90 35.27 2.57
556 569 2.674852 GCGATCTTCAGCAGTTGATTGA 59.325 45.455 0.00 0.00 35.27 2.57
557 570 2.223203 GGCGATCTTCAGCAGTTGATTG 60.223 50.000 0.00 0.00 35.27 2.67
558 571 2.012673 GGCGATCTTCAGCAGTTGATT 58.987 47.619 0.00 0.00 35.27 2.57
559 572 1.661341 GGCGATCTTCAGCAGTTGAT 58.339 50.000 0.00 0.00 35.27 2.57
560 573 0.737367 CGGCGATCTTCAGCAGTTGA 60.737 55.000 0.00 0.00 34.54 3.18
561 574 1.016130 ACGGCGATCTTCAGCAGTTG 61.016 55.000 16.62 0.00 38.54 3.16
562 575 0.530744 TACGGCGATCTTCAGCAGTT 59.469 50.000 16.62 0.00 41.58 3.16
563 576 0.179134 GTACGGCGATCTTCAGCAGT 60.179 55.000 16.62 2.25 43.56 4.40
564 577 0.101399 AGTACGGCGATCTTCAGCAG 59.899 55.000 16.62 0.00 34.54 4.24
565 578 0.100682 GAGTACGGCGATCTTCAGCA 59.899 55.000 16.62 0.00 34.54 4.41
566 579 0.595310 GGAGTACGGCGATCTTCAGC 60.595 60.000 16.62 0.00 0.00 4.26
567 580 0.738975 TGGAGTACGGCGATCTTCAG 59.261 55.000 16.62 0.00 0.00 3.02
568 581 0.738975 CTGGAGTACGGCGATCTTCA 59.261 55.000 16.62 14.79 0.00 3.02
569 582 0.739561 ACTGGAGTACGGCGATCTTC 59.260 55.000 16.62 10.64 0.00 2.87
570 583 0.739561 GACTGGAGTACGGCGATCTT 59.260 55.000 16.62 0.00 0.00 2.40
571 584 0.107116 AGACTGGAGTACGGCGATCT 60.107 55.000 16.62 11.36 0.00 2.75
572 585 0.308376 GAGACTGGAGTACGGCGATC 59.692 60.000 16.62 8.51 0.00 3.69
573 586 1.102222 GGAGACTGGAGTACGGCGAT 61.102 60.000 16.62 0.00 0.00 4.58
574 587 1.748122 GGAGACTGGAGTACGGCGA 60.748 63.158 16.62 0.00 0.00 5.54
575 588 1.716826 GAGGAGACTGGAGTACGGCG 61.717 65.000 4.80 4.80 44.43 6.46
576 589 1.716826 CGAGGAGACTGGAGTACGGC 61.717 65.000 0.00 0.00 44.43 5.68
577 590 0.392729 ACGAGGAGACTGGAGTACGG 60.393 60.000 0.00 0.00 44.43 4.02
578 591 0.727970 CACGAGGAGACTGGAGTACG 59.272 60.000 0.00 0.00 44.43 3.67
579 592 2.110901 TCACGAGGAGACTGGAGTAC 57.889 55.000 0.00 0.00 44.43 2.73
580 593 2.712709 CTTCACGAGGAGACTGGAGTA 58.287 52.381 0.00 0.00 44.43 2.59
581 594 1.540267 CTTCACGAGGAGACTGGAGT 58.460 55.000 0.00 0.00 44.43 3.85
582 595 0.172352 GCTTCACGAGGAGACTGGAG 59.828 60.000 0.00 0.00 44.43 3.86
583 596 1.251527 GGCTTCACGAGGAGACTGGA 61.252 60.000 0.00 0.00 44.43 3.86
584 597 1.216710 GGCTTCACGAGGAGACTGG 59.783 63.158 0.00 0.00 44.43 4.00
585 598 0.108898 CTGGCTTCACGAGGAGACTG 60.109 60.000 0.00 0.00 44.43 3.51
587 600 1.446966 GCTGGCTTCACGAGGAGAC 60.447 63.158 0.00 0.00 0.00 3.36
588 601 2.650116 GGCTGGCTTCACGAGGAGA 61.650 63.158 0.00 0.00 0.00 3.71
589 602 2.125350 GGCTGGCTTCACGAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
590 603 3.706373 GGGCTGGCTTCACGAGGA 61.706 66.667 0.00 0.00 0.00 3.71
607 620 4.444838 TTCCGGATGCCACGACCG 62.445 66.667 4.15 0.00 45.24 4.79
608 621 2.511600 CTTCCGGATGCCACGACC 60.512 66.667 4.15 0.00 0.00 4.79
609 622 0.672401 TTTCTTCCGGATGCCACGAC 60.672 55.000 4.15 0.00 0.00 4.34
610 623 0.672401 GTTTCTTCCGGATGCCACGA 60.672 55.000 4.15 0.00 0.00 4.35
611 624 0.953471 TGTTTCTTCCGGATGCCACG 60.953 55.000 4.15 0.00 0.00 4.94
612 625 1.068541 GTTGTTTCTTCCGGATGCCAC 60.069 52.381 4.15 8.30 0.00 5.01
613 626 1.243902 GTTGTTTCTTCCGGATGCCA 58.756 50.000 4.15 2.53 0.00 4.92
614 627 1.243902 TGTTGTTTCTTCCGGATGCC 58.756 50.000 4.15 0.00 0.00 4.40
615 628 2.661594 GTTGTTGTTTCTTCCGGATGC 58.338 47.619 4.15 0.00 0.00 3.91
616 629 2.546368 TCGTTGTTGTTTCTTCCGGATG 59.454 45.455 4.15 8.29 0.00 3.51
617 630 2.841215 TCGTTGTTGTTTCTTCCGGAT 58.159 42.857 4.15 0.00 0.00 4.18
618 631 2.312722 TCGTTGTTGTTTCTTCCGGA 57.687 45.000 0.00 0.00 0.00 5.14
619 632 2.289547 ACATCGTTGTTGTTTCTTCCGG 59.710 45.455 0.00 0.00 29.55 5.14
620 633 3.288242 CACATCGTTGTTGTTTCTTCCG 58.712 45.455 0.00 0.00 32.34 4.30
621 634 3.042887 GCACATCGTTGTTGTTTCTTCC 58.957 45.455 0.00 0.00 32.34 3.46
622 635 3.690422 TGCACATCGTTGTTGTTTCTTC 58.310 40.909 0.00 0.00 32.34 2.87
623 636 3.773860 TGCACATCGTTGTTGTTTCTT 57.226 38.095 0.00 0.00 32.34 2.52
624 637 3.773860 TTGCACATCGTTGTTGTTTCT 57.226 38.095 0.00 0.00 32.34 2.52
625 638 4.041049 TGATTGCACATCGTTGTTGTTTC 58.959 39.130 0.00 0.00 32.34 2.78
626 639 4.039151 TGATTGCACATCGTTGTTGTTT 57.961 36.364 0.00 0.00 32.34 2.83
627 640 3.706802 TGATTGCACATCGTTGTTGTT 57.293 38.095 0.00 0.00 32.34 2.83
628 641 3.567530 CATGATTGCACATCGTTGTTGT 58.432 40.909 0.00 0.00 32.34 3.32
642 655 2.575532 ACGGATAGGGTTGCATGATTG 58.424 47.619 0.00 0.00 0.00 2.67
643 656 3.297134 AACGGATAGGGTTGCATGATT 57.703 42.857 0.00 0.00 0.00 2.57
644 657 3.117888 AGAAACGGATAGGGTTGCATGAT 60.118 43.478 0.00 0.00 0.00 2.45
645 658 2.238646 AGAAACGGATAGGGTTGCATGA 59.761 45.455 0.00 0.00 0.00 3.07
646 659 2.355756 CAGAAACGGATAGGGTTGCATG 59.644 50.000 0.00 0.00 0.00 4.06
647 660 2.643551 CAGAAACGGATAGGGTTGCAT 58.356 47.619 0.00 0.00 0.00 3.96
648 661 1.948611 GCAGAAACGGATAGGGTTGCA 60.949 52.381 0.00 0.00 0.00 4.08
649 662 0.733150 GCAGAAACGGATAGGGTTGC 59.267 55.000 0.00 0.00 0.00 4.17
650 663 1.379527 GGCAGAAACGGATAGGGTTG 58.620 55.000 0.00 0.00 0.00 3.77
651 664 0.255033 GGGCAGAAACGGATAGGGTT 59.745 55.000 0.00 0.00 0.00 4.11
652 665 1.632965 GGGGCAGAAACGGATAGGGT 61.633 60.000 0.00 0.00 0.00 4.34
653 666 1.148498 GGGGCAGAAACGGATAGGG 59.852 63.158 0.00 0.00 0.00 3.53
654 667 0.546598 AAGGGGCAGAAACGGATAGG 59.453 55.000 0.00 0.00 0.00 2.57
655 668 2.420058 AAAGGGGCAGAAACGGATAG 57.580 50.000 0.00 0.00 0.00 2.08
656 669 2.891191 AAAAGGGGCAGAAACGGATA 57.109 45.000 0.00 0.00 0.00 2.59
657 670 2.009681 AAAAAGGGGCAGAAACGGAT 57.990 45.000 0.00 0.00 0.00 4.18
658 671 3.524346 AAAAAGGGGCAGAAACGGA 57.476 47.368 0.00 0.00 0.00 4.69
676 689 2.531206 CGGACAGCGTTTTTCCAAAAA 58.469 42.857 0.00 0.00 35.67 1.94
677 690 1.202313 CCGGACAGCGTTTTTCCAAAA 60.202 47.619 0.00 0.00 0.00 2.44
678 691 0.382515 CCGGACAGCGTTTTTCCAAA 59.617 50.000 0.00 0.00 0.00 3.28
679 692 0.748729 ACCGGACAGCGTTTTTCCAA 60.749 50.000 9.46 0.00 0.00 3.53
680 693 1.153127 ACCGGACAGCGTTTTTCCA 60.153 52.632 9.46 0.00 0.00 3.53
681 694 0.883370 AGACCGGACAGCGTTTTTCC 60.883 55.000 9.46 0.00 0.00 3.13
682 695 0.234884 CAGACCGGACAGCGTTTTTC 59.765 55.000 9.46 0.00 0.00 2.29
683 696 1.164041 CCAGACCGGACAGCGTTTTT 61.164 55.000 9.46 0.00 36.56 1.94
684 697 1.597027 CCAGACCGGACAGCGTTTT 60.597 57.895 9.46 0.00 36.56 2.43
685 698 2.030562 CCAGACCGGACAGCGTTT 59.969 61.111 9.46 0.00 36.56 3.60
686 699 4.003788 CCCAGACCGGACAGCGTT 62.004 66.667 9.46 0.00 36.56 4.84
688 701 4.742201 CACCCAGACCGGACAGCG 62.742 72.222 9.46 0.00 36.56 5.18
690 703 3.625897 TGCACCCAGACCGGACAG 61.626 66.667 9.46 0.00 36.56 3.51
691 704 3.936203 GTGCACCCAGACCGGACA 61.936 66.667 9.46 0.00 36.56 4.02
692 705 4.699522 GGTGCACCCAGACCGGAC 62.700 72.222 26.31 0.10 36.56 4.79
702 715 3.391665 CTCCTCCATCGGGTGCACC 62.392 68.421 28.57 28.57 34.93 5.01
703 716 2.187946 CTCCTCCATCGGGTGCAC 59.812 66.667 8.80 8.80 34.93 4.57
704 717 2.284625 ACTCCTCCATCGGGTGCA 60.285 61.111 0.00 0.00 34.93 4.57
726 739 1.001633 TGGCTACGGGAAGAAGTTGTC 59.998 52.381 0.00 0.00 0.00 3.18
739 752 2.202690 TTGCGTCCGATGGCTACG 60.203 61.111 0.00 0.00 39.55 3.51
758 771 1.573829 TTTCCATTTCTCGCGCGCTT 61.574 50.000 30.48 4.29 0.00 4.68
838 851 1.219393 CTCCTCTGTTCCTTCCGGC 59.781 63.158 0.00 0.00 0.00 6.13
840 853 0.171455 CGTCTCCTCTGTTCCTTCCG 59.829 60.000 0.00 0.00 0.00 4.30
946 963 1.749638 GGATTCTGCTGCTGCTGCT 60.750 57.895 27.67 11.28 40.48 4.24
947 964 2.772691 GGGATTCTGCTGCTGCTGC 61.773 63.158 22.51 22.51 40.48 5.25
948 965 2.119655 GGGGATTCTGCTGCTGCTG 61.120 63.158 17.00 15.94 40.48 4.41
949 966 2.274760 GGGGATTCTGCTGCTGCT 59.725 61.111 17.00 0.00 40.48 4.24
950 967 2.044650 TGGGGATTCTGCTGCTGC 60.045 61.111 8.89 8.89 40.20 5.25
951 968 1.001764 TGTGGGGATTCTGCTGCTG 60.002 57.895 0.00 0.00 0.00 4.41
952 969 1.001641 GTGTGGGGATTCTGCTGCT 60.002 57.895 0.00 0.00 0.00 4.24
953 970 2.401766 CGTGTGGGGATTCTGCTGC 61.402 63.158 0.00 0.00 0.00 5.25
954 971 1.021390 GTCGTGTGGGGATTCTGCTG 61.021 60.000 0.00 0.00 0.00 4.41
955 972 1.296715 GTCGTGTGGGGATTCTGCT 59.703 57.895 0.00 0.00 0.00 4.24
962 979 1.444250 GTTGTCTGTCGTGTGGGGA 59.556 57.895 0.00 0.00 0.00 4.81
963 980 1.597027 GGTTGTCTGTCGTGTGGGG 60.597 63.158 0.00 0.00 0.00 4.96
971 988 2.047179 GGGGAGCGGTTGTCTGTC 60.047 66.667 0.00 0.00 0.00 3.51
972 989 2.526873 AGGGGAGCGGTTGTCTGT 60.527 61.111 0.00 0.00 0.00 3.41
973 990 2.266055 GAGGGGAGCGGTTGTCTG 59.734 66.667 0.00 0.00 0.00 3.51
974 991 3.382832 CGAGGGGAGCGGTTGTCT 61.383 66.667 0.00 0.00 0.00 3.41
1090 1111 2.665603 GCCCTTCCTCTTCAGCGT 59.334 61.111 0.00 0.00 0.00 5.07
1202 1223 1.023513 AGCGAGCAAGTCAGATTGGC 61.024 55.000 0.00 0.00 0.00 4.52
1204 1225 1.436600 ACAGCGAGCAAGTCAGATTG 58.563 50.000 0.00 0.00 0.00 2.67
1206 1227 1.274728 AGAACAGCGAGCAAGTCAGAT 59.725 47.619 0.00 0.00 0.00 2.90
1210 1253 1.016653 GGGAGAACAGCGAGCAAGTC 61.017 60.000 0.00 0.00 0.00 3.01
1211 1254 1.004440 GGGAGAACAGCGAGCAAGT 60.004 57.895 0.00 0.00 0.00 3.16
1219 1262 1.120530 TCCGATAAGGGGAGAACAGC 58.879 55.000 0.00 0.00 41.52 4.40
1233 1276 0.530650 CACCGCTTAGCACATCCGAT 60.531 55.000 4.70 0.00 0.00 4.18
1373 1429 3.842923 ACATCGGCGCCTCCTCAG 61.843 66.667 26.68 7.77 0.00 3.35
1374 1430 4.147449 CACATCGGCGCCTCCTCA 62.147 66.667 26.68 2.85 0.00 3.86
1546 1649 0.674581 TTGAGCGCTTGGATCCACTG 60.675 55.000 15.91 11.76 0.00 3.66
1599 1779 1.654023 GAATTGAACCCGCCCGGAAG 61.654 60.000 0.73 0.00 37.50 3.46
1600 1780 1.676303 GAATTGAACCCGCCCGGAA 60.676 57.895 0.73 0.00 37.50 4.30
1601 1781 2.045731 GAATTGAACCCGCCCGGA 60.046 61.111 0.73 0.00 37.50 5.14
1602 1782 3.138128 GGAATTGAACCCGCCCGG 61.138 66.667 0.00 0.00 37.81 5.73
1604 1784 2.590704 AATGGAATTGAACCCGCCC 58.409 52.632 0.00 0.00 33.44 6.13
1636 1816 4.813161 AGATTACATCGATCCAAGCAGTTG 59.187 41.667 0.00 0.00 0.00 3.16
1637 1817 4.813161 CAGATTACATCGATCCAAGCAGTT 59.187 41.667 0.00 0.00 0.00 3.16
1650 1830 5.157067 TCGAATCGCTGATCAGATTACATC 58.843 41.667 27.04 13.68 37.23 3.06
1652 1832 4.568152 TCGAATCGCTGATCAGATTACA 57.432 40.909 27.04 4.54 37.23 2.41
1654 1834 4.853743 CGAATCGAATCGCTGATCAGATTA 59.146 41.667 27.04 10.51 37.23 1.75
1660 1840 4.258665 CGTAATCGAATCGAATCGCTGATC 60.259 45.833 17.89 6.46 42.44 2.92
1664 1844 1.714460 GCGTAATCGAATCGAATCGCT 59.286 47.619 28.88 5.64 43.34 4.93
1667 1847 2.159960 GCCTGCGTAATCGAATCGAATC 60.160 50.000 10.12 2.36 39.99 2.52
1669 1849 1.205657 GCCTGCGTAATCGAATCGAA 58.794 50.000 10.12 0.00 39.99 3.71
1692 1872 3.797546 GCTCGCCTCTTGCAGCAC 61.798 66.667 0.00 0.00 41.11 4.40
1693 1873 3.830464 TTGCTCGCCTCTTGCAGCA 62.830 57.895 0.00 0.00 45.75 4.41
1760 1940 4.101448 GCCCAGGTGACCATCGCT 62.101 66.667 3.63 0.00 0.00 4.93
1839 2019 4.457496 CACCTCCATGGACGCGCT 62.457 66.667 11.44 0.00 39.71 5.92
1918 2110 4.796231 GCTGCTGCTGCACCATGC 62.796 66.667 23.99 12.61 45.31 4.06
1949 2141 0.322816 AGGCGCTTCACAATGACCAT 60.323 50.000 7.64 0.00 0.00 3.55
1990 2186 1.840635 ACCTGCACCTAAGGATTCTCC 59.159 52.381 0.00 0.00 38.27 3.71
1999 2195 2.605257 ACTACAGACACCTGCACCTAA 58.395 47.619 0.00 0.00 44.16 2.69
2014 2284 4.500205 CCACCGTTGAAGAACACTACTACA 60.500 45.833 0.00 0.00 31.78 2.74
2082 2658 3.385384 CTCCTGCTCTCCGCACCA 61.385 66.667 0.00 0.00 45.47 4.17
2156 2733 0.682852 TGTTACTTCGGACCCACTGG 59.317 55.000 0.00 0.00 37.80 4.00
2157 2734 2.536761 TTGTTACTTCGGACCCACTG 57.463 50.000 0.00 0.00 0.00 3.66
2158 2735 2.353406 CGATTGTTACTTCGGACCCACT 60.353 50.000 1.48 0.00 0.00 4.00
2163 2740 2.921754 CCTGTCGATTGTTACTTCGGAC 59.078 50.000 8.01 6.33 36.08 4.79
2164 2741 2.821378 TCCTGTCGATTGTTACTTCGGA 59.179 45.455 8.01 0.00 36.08 4.55
2167 2744 4.859798 CAGTCTCCTGTCGATTGTTACTTC 59.140 45.833 0.00 0.00 33.80 3.01
2169 2746 4.442375 CAGTCTCCTGTCGATTGTTACT 57.558 45.455 0.00 0.00 33.80 2.24
2188 2765 7.093156 TGGAAGGCTATCTATCCATATGAACAG 60.093 40.741 3.65 0.00 37.05 3.16
2190 2767 7.187824 TGGAAGGCTATCTATCCATATGAAC 57.812 40.000 3.65 0.00 37.05 3.18
2194 2771 5.669447 CCCTTGGAAGGCTATCTATCCATAT 59.331 44.000 5.73 0.00 45.10 1.78
2195 2772 5.032846 CCCTTGGAAGGCTATCTATCCATA 58.967 45.833 5.73 0.00 45.10 2.74
2228 2807 4.613437 ACCAAAATGGAAGATAGCCACAT 58.387 39.130 2.85 0.00 40.96 3.21
2234 2813 6.840780 AGTCCAAACCAAAATGGAAGATAG 57.159 37.500 2.85 0.00 46.78 2.08
2236 2815 6.290605 CAAAGTCCAAACCAAAATGGAAGAT 58.709 36.000 2.85 0.00 46.78 2.40
2248 2827 2.230660 CTCTGGTCCAAAGTCCAAACC 58.769 52.381 0.00 0.00 30.37 3.27
2258 2837 0.906756 CCTCCTCTGCTCTGGTCCAA 60.907 60.000 0.00 0.00 0.00 3.53
2259 2838 1.305633 CCTCCTCTGCTCTGGTCCA 60.306 63.158 0.00 0.00 0.00 4.02
2260 2839 1.305718 ACCTCCTCTGCTCTGGTCC 60.306 63.158 0.00 0.00 0.00 4.46
2262 2841 1.157276 ACACCTCCTCTGCTCTGGT 59.843 57.895 0.00 0.00 0.00 4.00
2263 2842 1.190833 ACACACCTCCTCTGCTCTGG 61.191 60.000 0.00 0.00 0.00 3.86
2264 2843 0.037512 CACACACCTCCTCTGCTCTG 60.038 60.000 0.00 0.00 0.00 3.35
2268 2847 1.670406 CAGCACACACCTCCTCTGC 60.670 63.158 0.00 0.00 0.00 4.26
2269 2848 0.969149 TACAGCACACACCTCCTCTG 59.031 55.000 0.00 0.00 0.00 3.35
2281 2909 1.819632 CGGCCCAAGGATACAGCAC 60.820 63.158 0.00 0.00 41.41 4.40
2284 2912 1.146263 GGACGGCCCAAGGATACAG 59.854 63.158 0.00 0.00 34.54 2.74
2308 2936 6.291849 CGATTGAACAAACGATAGAGGATCAC 60.292 42.308 10.73 0.00 38.60 3.06
2337 2965 5.654650 TGGTAAACTTTTCTGTGACATTGGT 59.345 36.000 0.00 0.00 0.00 3.67
2342 2970 6.576662 TTGTTGGTAAACTTTTCTGTGACA 57.423 33.333 0.00 0.00 37.19 3.58
2363 2991 8.495949 CAAATGTACACAACTAGGACTACTTTG 58.504 37.037 0.00 0.00 0.00 2.77
2383 3011 1.708341 AACAGAGCAAGGCCAAATGT 58.292 45.000 5.01 0.00 0.00 2.71
2389 3017 2.101415 ACTTGAAAAACAGAGCAAGGCC 59.899 45.455 0.00 0.00 41.41 5.19
2418 3046 5.473504 ACGTTGGTGCTAGAAAATTCTCAAT 59.526 36.000 0.00 0.00 38.70 2.57
2442 3070 3.696782 GCTTCGTAGCTTGTCTCGA 57.303 52.632 6.80 0.00 44.27 4.04
2517 3145 4.695455 CCCATATCTAAGCCGTATTTGGTG 59.305 45.833 0.00 0.00 0.00 4.17
2518 3146 4.349930 ACCCATATCTAAGCCGTATTTGGT 59.650 41.667 0.00 0.00 0.00 3.67
2522 3158 6.481434 GGATACCCATATCTAAGCCGTATT 57.519 41.667 0.00 0.00 37.85 1.89
2625 3263 1.072159 CCTCGATCCCTGGATTGCC 59.928 63.158 8.35 0.00 36.28 4.52
2626 3264 1.072159 CCCTCGATCCCTGGATTGC 59.928 63.158 8.35 0.00 36.28 3.56
2627 3265 1.072159 GCCCTCGATCCCTGGATTG 59.928 63.158 7.04 7.04 37.36 2.67
2629 3267 1.840650 CAGCCCTCGATCCCTGGAT 60.841 63.158 0.00 0.00 37.59 3.41
2630 3268 2.444706 CAGCCCTCGATCCCTGGA 60.445 66.667 0.00 0.00 0.00 3.86
2673 3359 2.439701 TGGCGGTAGCGAGCTACT 60.440 61.111 27.67 0.00 45.88 2.57
2732 3418 1.751927 GGCAGATCAGCAGTTGGGG 60.752 63.158 12.54 0.00 35.83 4.96
2742 3428 2.725312 GGCGACTCCAGGCAGATCA 61.725 63.158 0.00 0.00 34.01 2.92
2743 3429 2.107953 GGCGACTCCAGGCAGATC 59.892 66.667 0.00 0.00 34.01 2.75
2744 3430 2.364842 AGGCGACTCCAGGCAGAT 60.365 61.111 0.00 0.00 32.90 2.90
2796 3482 1.135402 GCAAATAGTTCACCTTGCGGG 60.135 52.381 0.00 0.00 35.30 6.13
2831 3517 5.854010 ACGGATCAACTACACATCAGTAT 57.146 39.130 0.00 0.00 0.00 2.12
2856 3542 1.991121 CCCAGCAGCCAATCATACAT 58.009 50.000 0.00 0.00 0.00 2.29
2899 3585 6.166984 ACATCAACGGATCAATGATACTCT 57.833 37.500 3.71 0.00 32.73 3.24
2900 3586 6.587990 CCTACATCAACGGATCAATGATACTC 59.412 42.308 3.71 0.00 32.73 2.59
3114 3972 2.615447 GACACTGATACGGTGATACGGA 59.385 50.000 16.07 0.00 42.79 4.69
3158 4023 5.320549 TGTAATCGAAGGGAGTACTTGTC 57.679 43.478 0.00 0.00 44.45 3.18
3163 4028 7.387122 GGGAATATTTGTAATCGAAGGGAGTAC 59.613 40.741 0.00 0.00 44.41 2.73
3164 4029 7.291651 AGGGAATATTTGTAATCGAAGGGAGTA 59.708 37.037 0.00 0.00 0.00 2.59
3167 4032 6.465321 GGAGGGAATATTTGTAATCGAAGGGA 60.465 42.308 0.00 0.00 0.00 4.20
3168 4033 5.705905 GGAGGGAATATTTGTAATCGAAGGG 59.294 44.000 0.00 0.00 0.00 3.95
3169 4034 5.408604 CGGAGGGAATATTTGTAATCGAAGG 59.591 44.000 0.00 0.00 0.00 3.46
3170 4035 5.989777 ACGGAGGGAATATTTGTAATCGAAG 59.010 40.000 0.00 0.00 0.00 3.79
3172 4037 5.540400 ACGGAGGGAATATTTGTAATCGA 57.460 39.130 0.00 0.00 0.00 3.59
3174 4039 6.059484 TGGAACGGAGGGAATATTTGTAATC 58.941 40.000 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.