Multiple sequence alignment - TraesCS5A01G272600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G272600 chr5A 100.000 3794 0 0 1 3794 482314663 482318456 0.000000e+00 7007.0
1 TraesCS5A01G272600 chr5A 79.526 464 76 17 3230 3684 6175893 6175440 2.850000e-81 313.0
2 TraesCS5A01G272600 chr5A 88.889 72 8 0 454 525 599210032 599209961 5.220000e-14 89.8
3 TraesCS5A01G272600 chr5D 92.849 2503 115 28 525 2999 381978742 381981208 0.000000e+00 3572.0
4 TraesCS5A01G272600 chr5D 86.761 355 42 4 1 352 212885813 212886165 1.280000e-104 390.0
5 TraesCS5A01G272600 chr5B 92.151 2408 112 25 619 2999 458385715 458388072 0.000000e+00 3328.0
6 TraesCS5A01G272600 chr5B 87.955 357 35 7 1 352 389027856 389028209 7.580000e-112 414.0
7 TraesCS5A01G272600 chr5B 85.366 369 50 3 1 366 292389563 292389196 2.770000e-101 379.0
8 TraesCS5A01G272600 chr5B 92.500 80 6 0 448 527 493402118 493402039 8.610000e-22 115.0
9 TraesCS5A01G272600 chr5B 87.500 88 10 1 438 525 185202912 185202998 2.410000e-17 100.0
10 TraesCS5A01G272600 chr6B 89.299 1112 81 21 1897 2997 532044843 532045927 0.000000e+00 1360.0
11 TraesCS5A01G272600 chr6B 86.582 1021 76 30 907 1877 532043667 532044676 0.000000e+00 1070.0
12 TraesCS5A01G272600 chr6B 81.481 189 33 2 3234 3421 415032291 415032478 1.830000e-33 154.0
13 TraesCS5A01G272600 chr6D 89.688 1057 73 21 1954 2997 348084338 348083305 0.000000e+00 1315.0
14 TraesCS5A01G272600 chr6D 86.346 1018 76 30 907 1877 348085671 348084670 0.000000e+00 1051.0
15 TraesCS5A01G272600 chr6A 90.580 966 73 11 1946 2904 495452157 495453111 0.000000e+00 1264.0
16 TraesCS5A01G272600 chr6A 85.209 1102 85 36 907 1958 495450668 495451741 0.000000e+00 1061.0
17 TraesCS5A01G272600 chr6A 85.556 90 13 0 438 527 203213321 203213232 1.120000e-15 95.3
18 TraesCS5A01G272600 chr1A 91.394 825 45 15 2996 3794 426923692 426924516 0.000000e+00 1107.0
19 TraesCS5A01G272600 chr1A 87.079 356 38 7 1 352 77033652 77033301 2.750000e-106 396.0
20 TraesCS5A01G272600 chr1A 88.506 87 10 0 438 524 267266661 267266747 5.180000e-19 106.0
21 TraesCS5A01G272600 chr1A 85.714 84 12 0 442 525 415650107 415650024 5.220000e-14 89.8
22 TraesCS5A01G272600 chr1A 93.333 45 3 0 363 407 267266625 267266669 2.450000e-07 67.6
23 TraesCS5A01G272600 chr1D 87.331 813 61 22 2996 3794 236088113 236088897 0.000000e+00 893.0
24 TraesCS5A01G272600 chr2D 78.209 1418 245 50 1177 2556 548082211 548080820 0.000000e+00 848.0
25 TraesCS5A01G272600 chr2D 89.789 284 18 4 1224 1496 68467442 68467159 1.680000e-93 353.0
26 TraesCS5A01G272600 chr2D 80.402 199 37 2 3234 3431 529678868 529679065 2.360000e-32 150.0
27 TraesCS5A01G272600 chr2D 98.667 75 1 0 1592 1666 68467161 68467087 2.380000e-27 134.0
28 TraesCS5A01G272600 chr3D 87.158 366 42 4 1 363 231361897 231361534 9.810000e-111 411.0
29 TraesCS5A01G272600 chr3D 80.749 187 34 2 3246 3431 424620049 424619864 1.100000e-30 145.0
30 TraesCS5A01G272600 chr4D 86.740 362 41 6 1 358 212078503 212078145 2.750000e-106 396.0
31 TraesCS5A01G272600 chr4D 85.714 364 44 7 1 359 315275295 315275655 9.950000e-101 377.0
32 TraesCS5A01G272600 chr2A 88.554 332 31 6 34 360 499656113 499656442 2.750000e-106 396.0
33 TraesCS5A01G272600 chr2A 95.556 45 2 0 363 407 539035259 539035303 5.260000e-09 73.1
34 TraesCS5A01G272600 chr2B 85.194 412 21 21 733 1130 681840643 681840258 1.650000e-103 387.0
35 TraesCS5A01G272600 chr2B 78.993 457 78 15 3234 3681 789860612 789861059 2.870000e-76 296.0
36 TraesCS5A01G272600 chr2B 93.717 191 11 1 1224 1413 681840265 681840075 6.200000e-73 285.0
37 TraesCS5A01G272600 chr2B 85.106 94 12 2 442 535 28447143 28447052 1.120000e-15 95.3
38 TraesCS5A01G272600 chr7A 86.027 365 42 8 1 360 100294135 100294495 2.140000e-102 383.0
39 TraesCS5A01G272600 chr7D 80.588 170 31 2 3250 3418 123875909 123876077 3.080000e-26 130.0
40 TraesCS5A01G272600 chr3B 80.571 175 29 4 3247 3418 745713397 745713569 3.080000e-26 130.0
41 TraesCS5A01G272600 chr7B 86.905 84 11 0 442 525 743630638 743630555 1.120000e-15 95.3
42 TraesCS5A01G272600 chr7B 84.444 90 14 0 439 528 626182066 626182155 5.220000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G272600 chr5A 482314663 482318456 3793 False 7007.0 7007 100.0000 1 3794 1 chr5A.!!$F1 3793
1 TraesCS5A01G272600 chr5D 381978742 381981208 2466 False 3572.0 3572 92.8490 525 2999 1 chr5D.!!$F2 2474
2 TraesCS5A01G272600 chr5B 458385715 458388072 2357 False 3328.0 3328 92.1510 619 2999 1 chr5B.!!$F3 2380
3 TraesCS5A01G272600 chr6B 532043667 532045927 2260 False 1215.0 1360 87.9405 907 2997 2 chr6B.!!$F2 2090
4 TraesCS5A01G272600 chr6D 348083305 348085671 2366 True 1183.0 1315 88.0170 907 2997 2 chr6D.!!$R1 2090
5 TraesCS5A01G272600 chr6A 495450668 495453111 2443 False 1162.5 1264 87.8945 907 2904 2 chr6A.!!$F1 1997
6 TraesCS5A01G272600 chr1A 426923692 426924516 824 False 1107.0 1107 91.3940 2996 3794 1 chr1A.!!$F1 798
7 TraesCS5A01G272600 chr1D 236088113 236088897 784 False 893.0 893 87.3310 2996 3794 1 chr1D.!!$F1 798
8 TraesCS5A01G272600 chr2D 548080820 548082211 1391 True 848.0 848 78.2090 1177 2556 1 chr2D.!!$R1 1379
9 TraesCS5A01G272600 chr2B 681840075 681840643 568 True 336.0 387 89.4555 733 1413 2 chr2B.!!$R2 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.107643 TGTCGATCCAGTTGTGCCAA 59.892 50.0 0.00 0.00 0.0 4.52 F
128 129 0.396435 TCGATCCAGTTGTGCCAACT 59.604 50.0 12.98 12.98 0.0 3.16 F
2225 2776 0.110678 CATCCTCCATGCCATCTGCT 59.889 55.0 0.00 0.00 42.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2632 0.391130 GGTAAGTCTGCACGGCATGA 60.391 55.000 0.00 0.00 38.13 3.07 R
2405 2956 3.134623 TCTTGTTCCACAGAAGAGAGCAA 59.865 43.478 0.00 0.00 30.91 3.91 R
3135 3710 0.687757 TCTAGAAGGGCATGGCGTCT 60.688 55.000 22.33 22.33 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.771590 TTGCTGTTCATGTTGATCTTCC 57.228 40.909 0.00 0.00 0.00 3.46
23 24 4.025040 TGCTGTTCATGTTGATCTTCCT 57.975 40.909 0.00 0.00 0.00 3.36
24 25 5.164620 TGCTGTTCATGTTGATCTTCCTA 57.835 39.130 0.00 0.00 0.00 2.94
25 26 5.559770 TGCTGTTCATGTTGATCTTCCTAA 58.440 37.500 0.00 0.00 0.00 2.69
26 27 5.645067 TGCTGTTCATGTTGATCTTCCTAAG 59.355 40.000 0.00 0.00 0.00 2.18
27 28 5.065731 GCTGTTCATGTTGATCTTCCTAAGG 59.934 44.000 0.00 0.00 0.00 2.69
28 29 6.373005 TGTTCATGTTGATCTTCCTAAGGA 57.627 37.500 0.00 0.00 0.00 3.36
29 30 6.962182 TGTTCATGTTGATCTTCCTAAGGAT 58.038 36.000 0.00 0.00 0.00 3.24
30 31 6.825213 TGTTCATGTTGATCTTCCTAAGGATG 59.175 38.462 0.00 0.00 0.00 3.51
31 32 6.813293 TCATGTTGATCTTCCTAAGGATGA 57.187 37.500 0.00 0.00 39.60 2.92
32 33 7.199167 TCATGTTGATCTTCCTAAGGATGAA 57.801 36.000 0.00 0.00 38.93 2.57
33 34 7.809238 TCATGTTGATCTTCCTAAGGATGAAT 58.191 34.615 0.00 0.00 38.93 2.57
34 35 7.718314 TCATGTTGATCTTCCTAAGGATGAATG 59.282 37.037 0.00 0.00 38.93 2.67
35 36 6.359804 TGTTGATCTTCCTAAGGATGAATGG 58.640 40.000 0.00 0.00 38.93 3.16
36 37 6.069440 TGTTGATCTTCCTAAGGATGAATGGT 60.069 38.462 0.00 0.00 38.93 3.55
37 38 6.581388 TGATCTTCCTAAGGATGAATGGTT 57.419 37.500 0.00 0.00 38.93 3.67
38 39 6.973642 TGATCTTCCTAAGGATGAATGGTTT 58.026 36.000 0.00 0.00 38.93 3.27
39 40 8.101309 TGATCTTCCTAAGGATGAATGGTTTA 57.899 34.615 0.00 0.00 38.93 2.01
40 41 8.556589 TGATCTTCCTAAGGATGAATGGTTTAA 58.443 33.333 0.00 0.00 38.93 1.52
41 42 9.408648 GATCTTCCTAAGGATGAATGGTTTAAA 57.591 33.333 0.00 0.00 38.93 1.52
42 43 9.942526 ATCTTCCTAAGGATGAATGGTTTAAAT 57.057 29.630 0.00 0.00 38.93 1.40
52 53 8.655935 GATGAATGGTTTAAATATCATCCCCT 57.344 34.615 16.54 0.67 38.01 4.79
53 54 9.753674 GATGAATGGTTTAAATATCATCCCCTA 57.246 33.333 16.54 0.00 38.01 3.53
79 80 9.916360 ATTAAATAAAAGATAGAGGAACCCGTT 57.084 29.630 0.00 0.00 0.00 4.44
84 85 7.672122 AAAAGATAGAGGAACCCGTTATAGT 57.328 36.000 0.00 0.00 0.00 2.12
85 86 7.672122 AAAGATAGAGGAACCCGTTATAGTT 57.328 36.000 0.00 0.00 0.00 2.24
86 87 8.773033 AAAGATAGAGGAACCCGTTATAGTTA 57.227 34.615 0.00 0.00 0.00 2.24
87 88 8.773033 AAGATAGAGGAACCCGTTATAGTTAA 57.227 34.615 0.00 0.00 0.00 2.01
88 89 8.773033 AGATAGAGGAACCCGTTATAGTTAAA 57.227 34.615 0.00 0.00 0.00 1.52
89 90 8.858094 AGATAGAGGAACCCGTTATAGTTAAAG 58.142 37.037 0.00 0.00 0.00 1.85
90 91 8.773033 ATAGAGGAACCCGTTATAGTTAAAGA 57.227 34.615 0.00 0.00 0.00 2.52
91 92 7.672122 AGAGGAACCCGTTATAGTTAAAGAT 57.328 36.000 0.00 0.00 0.00 2.40
92 93 7.498443 AGAGGAACCCGTTATAGTTAAAGATG 58.502 38.462 0.00 0.00 0.00 2.90
93 94 7.343833 AGAGGAACCCGTTATAGTTAAAGATGA 59.656 37.037 0.00 0.00 0.00 2.92
94 95 7.854337 AGGAACCCGTTATAGTTAAAGATGAA 58.146 34.615 0.00 0.00 0.00 2.57
95 96 8.323567 AGGAACCCGTTATAGTTAAAGATGAAA 58.676 33.333 0.00 0.00 0.00 2.69
96 97 8.393366 GGAACCCGTTATAGTTAAAGATGAAAC 58.607 37.037 0.00 0.00 0.00 2.78
97 98 9.159364 GAACCCGTTATAGTTAAAGATGAAACT 57.841 33.333 0.00 0.00 39.25 2.66
98 99 9.511272 AACCCGTTATAGTTAAAGATGAAACTT 57.489 29.630 0.00 0.00 37.19 2.66
99 100 9.511272 ACCCGTTATAGTTAAAGATGAAACTTT 57.489 29.630 0.00 0.00 41.90 2.66
100 101 9.983804 CCCGTTATAGTTAAAGATGAAACTTTC 57.016 33.333 0.00 0.00 40.09 2.62
115 116 7.072177 TGAAACTTTCATACAATGTCGATCC 57.928 36.000 0.00 0.00 34.08 3.36
116 117 6.652900 TGAAACTTTCATACAATGTCGATCCA 59.347 34.615 0.00 0.00 34.08 3.41
117 118 6.668541 AACTTTCATACAATGTCGATCCAG 57.331 37.500 0.00 0.00 0.00 3.86
118 119 5.734720 ACTTTCATACAATGTCGATCCAGT 58.265 37.500 0.00 0.00 0.00 4.00
119 120 6.173339 ACTTTCATACAATGTCGATCCAGTT 58.827 36.000 0.00 0.00 0.00 3.16
120 121 6.092670 ACTTTCATACAATGTCGATCCAGTTG 59.907 38.462 0.00 0.00 0.00 3.16
121 122 5.084818 TCATACAATGTCGATCCAGTTGT 57.915 39.130 0.00 0.00 36.94 3.32
122 123 4.869861 TCATACAATGTCGATCCAGTTGTG 59.130 41.667 11.50 3.57 35.01 3.33
123 124 1.806542 ACAATGTCGATCCAGTTGTGC 59.193 47.619 0.00 0.00 32.30 4.57
124 125 1.131126 CAATGTCGATCCAGTTGTGCC 59.869 52.381 0.00 0.00 0.00 5.01
125 126 0.324614 ATGTCGATCCAGTTGTGCCA 59.675 50.000 0.00 0.00 0.00 4.92
126 127 0.107643 TGTCGATCCAGTTGTGCCAA 59.892 50.000 0.00 0.00 0.00 4.52
127 128 0.517316 GTCGATCCAGTTGTGCCAAC 59.483 55.000 9.31 9.31 0.00 3.77
128 129 0.396435 TCGATCCAGTTGTGCCAACT 59.604 50.000 12.98 12.98 0.00 3.16
129 130 1.621317 TCGATCCAGTTGTGCCAACTA 59.379 47.619 16.88 6.62 0.00 2.24
130 131 1.732259 CGATCCAGTTGTGCCAACTAC 59.268 52.381 16.88 1.18 32.89 2.73
131 132 2.612972 CGATCCAGTTGTGCCAACTACT 60.613 50.000 16.88 3.36 42.15 2.57
132 133 3.412386 GATCCAGTTGTGCCAACTACTT 58.588 45.455 16.88 7.51 39.88 2.24
133 134 2.571212 TCCAGTTGTGCCAACTACTTG 58.429 47.619 16.88 8.41 39.88 3.16
134 135 2.092646 TCCAGTTGTGCCAACTACTTGT 60.093 45.455 16.88 0.00 39.88 3.16
135 136 3.134985 TCCAGTTGTGCCAACTACTTGTA 59.865 43.478 16.88 1.79 39.88 2.41
136 137 4.072131 CCAGTTGTGCCAACTACTTGTAT 58.928 43.478 16.88 0.00 39.88 2.29
137 138 4.518970 CCAGTTGTGCCAACTACTTGTATT 59.481 41.667 16.88 0.00 39.88 1.89
138 139 5.451908 CAGTTGTGCCAACTACTTGTATTG 58.548 41.667 16.88 3.25 39.88 1.90
139 140 5.238432 CAGTTGTGCCAACTACTTGTATTGA 59.762 40.000 16.88 0.00 39.88 2.57
140 141 5.470098 AGTTGTGCCAACTACTTGTATTGAG 59.530 40.000 16.08 0.00 38.98 3.02
141 142 5.222079 TGTGCCAACTACTTGTATTGAGA 57.778 39.130 0.00 0.00 0.00 3.27
142 143 5.616270 TGTGCCAACTACTTGTATTGAGAA 58.384 37.500 0.00 0.00 0.00 2.87
143 144 6.058833 TGTGCCAACTACTTGTATTGAGAAA 58.941 36.000 0.00 0.00 0.00 2.52
144 145 6.714810 TGTGCCAACTACTTGTATTGAGAAAT 59.285 34.615 0.00 0.00 0.00 2.17
145 146 7.094805 TGTGCCAACTACTTGTATTGAGAAATC 60.095 37.037 0.00 0.00 0.00 2.17
146 147 7.119846 GTGCCAACTACTTGTATTGAGAAATCT 59.880 37.037 0.00 0.00 0.00 2.40
147 148 7.334421 TGCCAACTACTTGTATTGAGAAATCTC 59.666 37.037 3.43 3.43 43.15 2.75
169 170 9.745018 ATCTCATTTTCTTGTTAGATTTGAGGA 57.255 29.630 0.00 0.00 34.75 3.71
170 171 9.573166 TCTCATTTTCTTGTTAGATTTGAGGAA 57.427 29.630 0.00 0.00 34.75 3.36
171 172 9.617975 CTCATTTTCTTGTTAGATTTGAGGAAC 57.382 33.333 0.00 0.00 32.69 3.62
172 173 9.130661 TCATTTTCTTGTTAGATTTGAGGAACA 57.869 29.630 0.00 0.00 0.00 3.18
173 174 9.918630 CATTTTCTTGTTAGATTTGAGGAACAT 57.081 29.630 0.00 0.00 32.19 2.71
174 175 9.918630 ATTTTCTTGTTAGATTTGAGGAACATG 57.081 29.630 0.00 0.00 32.19 3.21
175 176 6.500684 TCTTGTTAGATTTGAGGAACATGC 57.499 37.500 0.00 0.00 32.19 4.06
176 177 6.240894 TCTTGTTAGATTTGAGGAACATGCT 58.759 36.000 0.00 0.00 32.19 3.79
177 178 6.716628 TCTTGTTAGATTTGAGGAACATGCTT 59.283 34.615 0.00 0.00 32.19 3.91
178 179 7.882791 TCTTGTTAGATTTGAGGAACATGCTTA 59.117 33.333 0.00 0.00 32.19 3.09
179 180 7.994425 TGTTAGATTTGAGGAACATGCTTAA 57.006 32.000 0.00 0.00 0.00 1.85
180 181 8.579850 TGTTAGATTTGAGGAACATGCTTAAT 57.420 30.769 0.00 0.00 0.00 1.40
181 182 8.677300 TGTTAGATTTGAGGAACATGCTTAATC 58.323 33.333 0.00 0.00 0.00 1.75
182 183 8.897752 GTTAGATTTGAGGAACATGCTTAATCT 58.102 33.333 0.00 0.00 35.44 2.40
184 185 8.443953 AGATTTGAGGAACATGCTTAATCTAC 57.556 34.615 0.00 0.00 32.28 2.59
185 186 8.049117 AGATTTGAGGAACATGCTTAATCTACA 58.951 33.333 0.00 0.00 32.28 2.74
186 187 7.994425 TTTGAGGAACATGCTTAATCTACAA 57.006 32.000 0.00 0.00 0.00 2.41
187 188 6.985188 TGAGGAACATGCTTAATCTACAAC 57.015 37.500 0.00 0.00 0.00 3.32
188 189 6.711277 TGAGGAACATGCTTAATCTACAACT 58.289 36.000 0.00 0.00 0.00 3.16
189 190 6.595326 TGAGGAACATGCTTAATCTACAACTG 59.405 38.462 0.00 0.00 0.00 3.16
190 191 6.476378 AGGAACATGCTTAATCTACAACTGT 58.524 36.000 0.00 0.00 0.00 3.55
191 192 6.372659 AGGAACATGCTTAATCTACAACTGTG 59.627 38.462 0.00 0.00 0.00 3.66
192 193 6.403636 GGAACATGCTTAATCTACAACTGTGG 60.404 42.308 0.00 0.00 0.00 4.17
193 194 5.560724 ACATGCTTAATCTACAACTGTGGT 58.439 37.500 0.00 0.00 0.00 4.16
194 195 6.003950 ACATGCTTAATCTACAACTGTGGTT 58.996 36.000 0.00 0.00 35.86 3.67
195 196 7.165485 ACATGCTTAATCTACAACTGTGGTTA 58.835 34.615 0.00 0.00 33.88 2.85
196 197 7.663905 ACATGCTTAATCTACAACTGTGGTTAA 59.336 33.333 0.00 0.00 33.88 2.01
197 198 8.677300 CATGCTTAATCTACAACTGTGGTTAAT 58.323 33.333 0.00 0.00 33.88 1.40
198 199 9.899661 ATGCTTAATCTACAACTGTGGTTAATA 57.100 29.630 0.00 0.00 33.88 0.98
199 200 9.727859 TGCTTAATCTACAACTGTGGTTAATAA 57.272 29.630 0.00 0.00 33.88 1.40
225 226 9.948964 AAAGTAATATTAGAACACCTAAACCGT 57.051 29.630 0.00 0.00 40.45 4.83
231 232 7.838771 ATTAGAACACCTAAACCGTATGAAC 57.161 36.000 0.00 0.00 40.45 3.18
232 233 5.217978 AGAACACCTAAACCGTATGAACA 57.782 39.130 0.00 0.00 0.00 3.18
233 234 5.613329 AGAACACCTAAACCGTATGAACAA 58.387 37.500 0.00 0.00 0.00 2.83
234 235 6.056884 AGAACACCTAAACCGTATGAACAAA 58.943 36.000 0.00 0.00 0.00 2.83
235 236 6.713450 AGAACACCTAAACCGTATGAACAAAT 59.287 34.615 0.00 0.00 0.00 2.32
236 237 6.887626 ACACCTAAACCGTATGAACAAATT 57.112 33.333 0.00 0.00 0.00 1.82
237 238 7.982761 ACACCTAAACCGTATGAACAAATTA 57.017 32.000 0.00 0.00 0.00 1.40
238 239 8.393671 ACACCTAAACCGTATGAACAAATTAA 57.606 30.769 0.00 0.00 0.00 1.40
239 240 8.508875 ACACCTAAACCGTATGAACAAATTAAG 58.491 33.333 0.00 0.00 0.00 1.85
240 241 7.966204 CACCTAAACCGTATGAACAAATTAAGG 59.034 37.037 0.00 0.00 0.00 2.69
241 242 7.666804 ACCTAAACCGTATGAACAAATTAAGGT 59.333 33.333 0.00 0.00 0.00 3.50
242 243 8.517056 CCTAAACCGTATGAACAAATTAAGGTT 58.483 33.333 0.00 0.00 40.68 3.50
243 244 9.337091 CTAAACCGTATGAACAAATTAAGGTTG 57.663 33.333 0.00 1.16 39.14 3.77
244 245 7.513371 AACCGTATGAACAAATTAAGGTTGA 57.487 32.000 8.30 0.00 37.95 3.18
245 246 7.513371 ACCGTATGAACAAATTAAGGTTGAA 57.487 32.000 8.30 0.00 0.00 2.69
246 247 7.364970 ACCGTATGAACAAATTAAGGTTGAAC 58.635 34.615 8.30 0.00 0.00 3.18
247 248 6.804783 CCGTATGAACAAATTAAGGTTGAACC 59.195 38.462 6.16 6.16 38.99 3.62
262 263 6.220726 GGTTGAACCTAATATTGCAATGGT 57.779 37.500 22.27 16.78 34.73 3.55
263 264 6.639563 GGTTGAACCTAATATTGCAATGGTT 58.360 36.000 24.38 24.38 40.05 3.67
264 265 7.777095 GGTTGAACCTAATATTGCAATGGTTA 58.223 34.615 24.25 19.19 37.83 2.85
265 266 8.254508 GGTTGAACCTAATATTGCAATGGTTAA 58.745 33.333 24.25 17.84 37.83 2.01
266 267 9.646427 GTTGAACCTAATATTGCAATGGTTAAA 57.354 29.630 24.25 21.41 37.83 1.52
280 281 9.679661 TGCAATGGTTAAATATCTCTTAGTTGA 57.320 29.630 0.00 0.00 0.00 3.18
294 295 8.195165 TCTCTTAGTTGATAATACTGGATGGG 57.805 38.462 0.00 0.00 0.00 4.00
295 296 6.769512 TCTTAGTTGATAATACTGGATGGGC 58.230 40.000 0.00 0.00 0.00 5.36
296 297 6.328934 TCTTAGTTGATAATACTGGATGGGCA 59.671 38.462 0.00 0.00 0.00 5.36
297 298 5.589367 AGTTGATAATACTGGATGGGCAT 57.411 39.130 0.00 0.00 0.00 4.40
298 299 5.319453 AGTTGATAATACTGGATGGGCATG 58.681 41.667 0.00 0.00 0.00 4.06
299 300 4.999469 TGATAATACTGGATGGGCATGT 57.001 40.909 0.00 0.00 0.00 3.21
300 301 5.323382 TGATAATACTGGATGGGCATGTT 57.677 39.130 0.00 0.00 0.00 2.71
301 302 6.446909 TGATAATACTGGATGGGCATGTTA 57.553 37.500 0.00 0.00 0.00 2.41
302 303 7.031415 TGATAATACTGGATGGGCATGTTAT 57.969 36.000 0.00 0.00 0.00 1.89
303 304 7.469343 TGATAATACTGGATGGGCATGTTATT 58.531 34.615 0.00 0.00 0.00 1.40
304 305 7.949565 TGATAATACTGGATGGGCATGTTATTT 59.050 33.333 0.00 0.00 0.00 1.40
305 306 9.461312 GATAATACTGGATGGGCATGTTATTTA 57.539 33.333 0.00 0.00 0.00 1.40
306 307 9.995594 ATAATACTGGATGGGCATGTTATTTAT 57.004 29.630 0.00 0.00 0.00 1.40
307 308 8.725606 AATACTGGATGGGCATGTTATTTATT 57.274 30.769 0.00 0.00 0.00 1.40
308 309 8.725606 ATACTGGATGGGCATGTTATTTATTT 57.274 30.769 0.00 0.00 0.00 1.40
309 310 7.436320 ACTGGATGGGCATGTTATTTATTTT 57.564 32.000 0.00 0.00 0.00 1.82
310 311 7.860584 ACTGGATGGGCATGTTATTTATTTTT 58.139 30.769 0.00 0.00 0.00 1.94
311 312 7.769970 ACTGGATGGGCATGTTATTTATTTTTG 59.230 33.333 0.00 0.00 0.00 2.44
312 313 7.628234 TGGATGGGCATGTTATTTATTTTTGT 58.372 30.769 0.00 0.00 0.00 2.83
313 314 8.762645 TGGATGGGCATGTTATTTATTTTTGTA 58.237 29.630 0.00 0.00 0.00 2.41
314 315 9.606631 GGATGGGCATGTTATTTATTTTTGTAA 57.393 29.630 0.00 0.00 0.00 2.41
332 333 9.979578 TTTTTGTAATGATGCTGTTAGAATTGT 57.020 25.926 0.00 0.00 0.00 2.71
333 334 9.979578 TTTTGTAATGATGCTGTTAGAATTGTT 57.020 25.926 0.00 0.00 0.00 2.83
338 339 8.986477 AATGATGCTGTTAGAATTGTTAAACC 57.014 30.769 0.00 0.00 0.00 3.27
339 340 6.919721 TGATGCTGTTAGAATTGTTAAACCC 58.080 36.000 0.00 0.00 0.00 4.11
340 341 5.365403 TGCTGTTAGAATTGTTAAACCCG 57.635 39.130 0.00 0.00 0.00 5.28
341 342 4.822896 TGCTGTTAGAATTGTTAAACCCGT 59.177 37.500 0.00 0.00 0.00 5.28
342 343 5.299782 TGCTGTTAGAATTGTTAAACCCGTT 59.700 36.000 0.00 0.00 0.00 4.44
343 344 6.485984 TGCTGTTAGAATTGTTAAACCCGTTA 59.514 34.615 0.00 0.00 0.00 3.18
344 345 7.019418 GCTGTTAGAATTGTTAAACCCGTTAG 58.981 38.462 0.00 0.00 0.00 2.34
345 346 7.095102 GCTGTTAGAATTGTTAAACCCGTTAGA 60.095 37.037 0.00 0.00 0.00 2.10
346 347 8.674263 TGTTAGAATTGTTAAACCCGTTAGAA 57.326 30.769 0.00 0.00 0.00 2.10
347 348 9.118300 TGTTAGAATTGTTAAACCCGTTAGAAA 57.882 29.630 0.00 0.00 0.00 2.52
350 351 8.398878 AGAATTGTTAAACCCGTTAGAAATGA 57.601 30.769 0.00 0.00 0.00 2.57
351 352 8.852135 AGAATTGTTAAACCCGTTAGAAATGAA 58.148 29.630 0.00 0.00 0.00 2.57
352 353 9.634163 GAATTGTTAAACCCGTTAGAAATGAAT 57.366 29.630 0.00 0.00 0.00 2.57
353 354 8.980143 ATTGTTAAACCCGTTAGAAATGAATG 57.020 30.769 0.00 0.00 0.00 2.67
354 355 7.513371 TGTTAAACCCGTTAGAAATGAATGT 57.487 32.000 0.00 0.00 0.00 2.71
355 356 7.364200 TGTTAAACCCGTTAGAAATGAATGTG 58.636 34.615 0.00 0.00 0.00 3.21
356 357 7.228906 TGTTAAACCCGTTAGAAATGAATGTGA 59.771 33.333 0.00 0.00 0.00 3.58
357 358 6.834168 AAACCCGTTAGAAATGAATGTGAT 57.166 33.333 0.00 0.00 0.00 3.06
358 359 7.931578 AAACCCGTTAGAAATGAATGTGATA 57.068 32.000 0.00 0.00 0.00 2.15
359 360 7.931578 AACCCGTTAGAAATGAATGTGATAA 57.068 32.000 0.00 0.00 0.00 1.75
360 361 8.519799 AACCCGTTAGAAATGAATGTGATAAT 57.480 30.769 0.00 0.00 0.00 1.28
361 362 8.154649 ACCCGTTAGAAATGAATGTGATAATC 57.845 34.615 0.00 0.00 0.00 1.75
362 363 7.993183 ACCCGTTAGAAATGAATGTGATAATCT 59.007 33.333 0.00 0.00 0.00 2.40
363 364 8.840321 CCCGTTAGAAATGAATGTGATAATCTT 58.160 33.333 0.00 0.00 0.00 2.40
364 365 9.655769 CCGTTAGAAATGAATGTGATAATCTTG 57.344 33.333 0.00 0.00 0.00 3.02
369 370 9.778993 AGAAATGAATGTGATAATCTTGAAACG 57.221 29.630 0.00 0.00 0.00 3.60
370 371 9.559958 GAAATGAATGTGATAATCTTGAAACGT 57.440 29.630 0.00 0.00 0.00 3.99
373 374 9.988350 ATGAATGTGATAATCTTGAAACGTAAC 57.012 29.630 0.00 0.00 0.00 2.50
374 375 8.447833 TGAATGTGATAATCTTGAAACGTAACC 58.552 33.333 0.00 0.00 0.00 2.85
375 376 7.915293 ATGTGATAATCTTGAAACGTAACCA 57.085 32.000 0.00 0.00 0.00 3.67
376 377 7.915293 TGTGATAATCTTGAAACGTAACCAT 57.085 32.000 0.00 0.00 0.00 3.55
377 378 8.330466 TGTGATAATCTTGAAACGTAACCATT 57.670 30.769 0.00 0.00 0.00 3.16
378 379 8.447833 TGTGATAATCTTGAAACGTAACCATTC 58.552 33.333 0.00 0.00 0.00 2.67
379 380 7.908601 GTGATAATCTTGAAACGTAACCATTCC 59.091 37.037 0.00 0.00 0.00 3.01
380 381 7.608376 TGATAATCTTGAAACGTAACCATTCCA 59.392 33.333 0.00 0.00 0.00 3.53
381 382 6.834168 AATCTTGAAACGTAACCATTCCAT 57.166 33.333 0.00 0.00 0.00 3.41
382 383 6.834168 ATCTTGAAACGTAACCATTCCATT 57.166 33.333 0.00 0.00 0.00 3.16
383 384 6.249035 TCTTGAAACGTAACCATTCCATTC 57.751 37.500 0.00 0.00 0.00 2.67
384 385 6.001460 TCTTGAAACGTAACCATTCCATTCT 58.999 36.000 0.00 0.00 0.00 2.40
385 386 7.162761 TCTTGAAACGTAACCATTCCATTCTA 58.837 34.615 0.00 0.00 0.00 2.10
386 387 7.827236 TCTTGAAACGTAACCATTCCATTCTAT 59.173 33.333 0.00 0.00 0.00 1.98
387 388 7.548196 TGAAACGTAACCATTCCATTCTATC 57.452 36.000 0.00 0.00 0.00 2.08
388 389 7.106890 TGAAACGTAACCATTCCATTCTATCA 58.893 34.615 0.00 0.00 0.00 2.15
389 390 7.608376 TGAAACGTAACCATTCCATTCTATCAA 59.392 33.333 0.00 0.00 0.00 2.57
390 391 7.931578 AACGTAACCATTCCATTCTATCAAA 57.068 32.000 0.00 0.00 0.00 2.69
391 392 8.519799 AACGTAACCATTCCATTCTATCAAAT 57.480 30.769 0.00 0.00 0.00 2.32
392 393 9.621629 AACGTAACCATTCCATTCTATCAAATA 57.378 29.630 0.00 0.00 0.00 1.40
393 394 9.793259 ACGTAACCATTCCATTCTATCAAATAT 57.207 29.630 0.00 0.00 0.00 1.28
396 397 8.655935 AACCATTCCATTCTATCAAATATCCC 57.344 34.615 0.00 0.00 0.00 3.85
397 398 7.184862 ACCATTCCATTCTATCAAATATCCCC 58.815 38.462 0.00 0.00 0.00 4.81
398 399 7.184161 CCATTCCATTCTATCAAATATCCCCA 58.816 38.462 0.00 0.00 0.00 4.96
399 400 7.675195 CCATTCCATTCTATCAAATATCCCCAA 59.325 37.037 0.00 0.00 0.00 4.12
400 401 8.526147 CATTCCATTCTATCAAATATCCCCAAC 58.474 37.037 0.00 0.00 0.00 3.77
401 402 7.406620 TCCATTCTATCAAATATCCCCAACT 57.593 36.000 0.00 0.00 0.00 3.16
402 403 8.518720 TCCATTCTATCAAATATCCCCAACTA 57.481 34.615 0.00 0.00 0.00 2.24
403 404 8.954729 TCCATTCTATCAAATATCCCCAACTAA 58.045 33.333 0.00 0.00 0.00 2.24
404 405 9.586732 CCATTCTATCAAATATCCCCAACTAAA 57.413 33.333 0.00 0.00 0.00 1.85
433 434 8.974060 TCTATCAAATATCCCCAACTAAACAC 57.026 34.615 0.00 0.00 0.00 3.32
434 435 8.553153 TCTATCAAATATCCCCAACTAAACACA 58.447 33.333 0.00 0.00 0.00 3.72
435 436 9.184523 CTATCAAATATCCCCAACTAAACACAA 57.815 33.333 0.00 0.00 0.00 3.33
436 437 7.461182 TCAAATATCCCCAACTAAACACAAG 57.539 36.000 0.00 0.00 0.00 3.16
437 438 7.235079 TCAAATATCCCCAACTAAACACAAGA 58.765 34.615 0.00 0.00 0.00 3.02
438 439 7.726291 TCAAATATCCCCAACTAAACACAAGAA 59.274 33.333 0.00 0.00 0.00 2.52
439 440 7.462571 AATATCCCCAACTAAACACAAGAAC 57.537 36.000 0.00 0.00 0.00 3.01
440 441 4.513406 TCCCCAACTAAACACAAGAACT 57.487 40.909 0.00 0.00 0.00 3.01
441 442 5.633655 TCCCCAACTAAACACAAGAACTA 57.366 39.130 0.00 0.00 0.00 2.24
442 443 6.003859 TCCCCAACTAAACACAAGAACTAA 57.996 37.500 0.00 0.00 0.00 2.24
443 444 6.424883 TCCCCAACTAAACACAAGAACTAAA 58.575 36.000 0.00 0.00 0.00 1.85
444 445 6.319405 TCCCCAACTAAACACAAGAACTAAAC 59.681 38.462 0.00 0.00 0.00 2.01
445 446 6.095720 CCCCAACTAAACACAAGAACTAAACA 59.904 38.462 0.00 0.00 0.00 2.83
446 447 7.201875 CCCCAACTAAACACAAGAACTAAACAT 60.202 37.037 0.00 0.00 0.00 2.71
447 448 8.842280 CCCAACTAAACACAAGAACTAAACATA 58.158 33.333 0.00 0.00 0.00 2.29
454 455 9.965824 AAACACAAGAACTAAACATAAGAATGG 57.034 29.630 0.00 0.00 37.43 3.16
455 456 8.918202 ACACAAGAACTAAACATAAGAATGGA 57.082 30.769 0.00 0.00 37.43 3.41
456 457 9.349713 ACACAAGAACTAAACATAAGAATGGAA 57.650 29.630 0.00 0.00 37.43 3.53
457 458 9.612620 CACAAGAACTAAACATAAGAATGGAAC 57.387 33.333 0.00 0.00 37.43 3.62
458 459 8.793592 ACAAGAACTAAACATAAGAATGGAACC 58.206 33.333 0.00 0.00 37.43 3.62
459 460 7.611213 AGAACTAAACATAAGAATGGAACCG 57.389 36.000 0.00 0.00 37.43 4.44
460 461 7.391620 AGAACTAAACATAAGAATGGAACCGA 58.608 34.615 0.00 0.00 37.43 4.69
461 462 8.047310 AGAACTAAACATAAGAATGGAACCGAT 58.953 33.333 0.00 0.00 37.43 4.18
462 463 7.787725 ACTAAACATAAGAATGGAACCGATC 57.212 36.000 0.00 0.00 37.43 3.69
473 474 1.668419 GAACCGATCCATTCCAGTGG 58.332 55.000 1.40 1.40 40.76 4.00
486 487 3.805066 TCCAGTGGAATGAAACCATGA 57.195 42.857 10.20 0.00 39.69 3.07
487 488 3.420893 TCCAGTGGAATGAAACCATGAC 58.579 45.455 10.20 0.00 39.69 3.06
488 489 3.156293 CCAGTGGAATGAAACCATGACA 58.844 45.455 1.68 0.00 39.69 3.58
489 490 3.765511 CCAGTGGAATGAAACCATGACAT 59.234 43.478 1.68 0.00 39.69 3.06
490 491 4.221262 CCAGTGGAATGAAACCATGACATT 59.779 41.667 1.68 0.81 39.69 2.71
491 492 5.404946 CAGTGGAATGAAACCATGACATTC 58.595 41.667 17.77 17.77 44.91 2.67
497 498 5.603170 ATGAAACCATGACATTCCATTCC 57.397 39.130 0.00 0.00 0.00 3.01
498 499 4.414677 TGAAACCATGACATTCCATTCCA 58.585 39.130 0.00 0.00 0.00 3.53
499 500 4.220382 TGAAACCATGACATTCCATTCCAC 59.780 41.667 0.00 0.00 0.00 4.02
500 501 3.744940 ACCATGACATTCCATTCCACT 57.255 42.857 0.00 0.00 0.00 4.00
501 502 4.051661 ACCATGACATTCCATTCCACTT 57.948 40.909 0.00 0.00 0.00 3.16
502 503 3.765511 ACCATGACATTCCATTCCACTTG 59.234 43.478 0.00 0.00 0.00 3.16
503 504 3.131577 CCATGACATTCCATTCCACTTGG 59.868 47.826 0.00 0.00 35.45 3.61
504 505 3.524095 TGACATTCCATTCCACTTGGT 57.476 42.857 0.00 0.00 35.64 3.67
505 506 3.843422 TGACATTCCATTCCACTTGGTT 58.157 40.909 0.00 0.00 35.64 3.67
506 507 3.826157 TGACATTCCATTCCACTTGGTTC 59.174 43.478 0.00 0.00 35.64 3.62
507 508 3.165071 ACATTCCATTCCACTTGGTTCC 58.835 45.455 0.00 0.00 35.64 3.62
508 509 2.302587 TTCCATTCCACTTGGTTCCC 57.697 50.000 0.00 0.00 35.64 3.97
509 510 1.153539 TCCATTCCACTTGGTTCCCA 58.846 50.000 0.00 0.00 35.64 4.37
510 511 1.501170 TCCATTCCACTTGGTTCCCAA 59.499 47.619 0.00 0.00 41.69 4.12
511 512 2.091055 TCCATTCCACTTGGTTCCCAAA 60.091 45.455 0.00 0.00 43.44 3.28
512 513 2.037121 CCATTCCACTTGGTTCCCAAAC 59.963 50.000 0.00 0.00 43.44 2.93
522 523 1.877637 GTTCCCAAACCAAATGCACC 58.122 50.000 0.00 0.00 0.00 5.01
523 524 0.761802 TTCCCAAACCAAATGCACCC 59.238 50.000 0.00 0.00 0.00 4.61
535 536 5.111293 CCAAATGCACCCTTAATGAATGAC 58.889 41.667 0.00 0.00 0.00 3.06
604 605 3.126001 TCCTTTCCCATATCATCACGC 57.874 47.619 0.00 0.00 0.00 5.34
611 612 3.764972 TCCCATATCATCACGCGGTAATA 59.235 43.478 12.47 1.12 0.00 0.98
612 613 4.221041 TCCCATATCATCACGCGGTAATAA 59.779 41.667 12.47 0.00 0.00 1.40
613 614 5.105106 TCCCATATCATCACGCGGTAATAAT 60.105 40.000 12.47 0.00 0.00 1.28
614 615 5.234329 CCCATATCATCACGCGGTAATAATC 59.766 44.000 12.47 0.00 0.00 1.75
762 768 5.245531 TCTGTGACTTTCTCTCTCTCTCTC 58.754 45.833 0.00 0.00 0.00 3.20
763 769 5.013079 TCTGTGACTTTCTCTCTCTCTCTCT 59.987 44.000 0.00 0.00 0.00 3.10
764 770 5.245531 TGTGACTTTCTCTCTCTCTCTCTC 58.754 45.833 0.00 0.00 0.00 3.20
765 771 5.013079 TGTGACTTTCTCTCTCTCTCTCTCT 59.987 44.000 0.00 0.00 0.00 3.10
766 772 5.582665 GTGACTTTCTCTCTCTCTCTCTCTC 59.417 48.000 0.00 0.00 0.00 3.20
767 773 5.485353 TGACTTTCTCTCTCTCTCTCTCTCT 59.515 44.000 0.00 0.00 0.00 3.10
768 774 5.983540 ACTTTCTCTCTCTCTCTCTCTCTC 58.016 45.833 0.00 0.00 0.00 3.20
769 775 5.723887 ACTTTCTCTCTCTCTCTCTCTCTCT 59.276 44.000 0.00 0.00 0.00 3.10
833 843 1.104577 AGACGAATCCCTCTCGCTCC 61.105 60.000 0.00 0.00 39.97 4.70
944 967 1.787847 CGTTTACTTCTGCCGCCTG 59.212 57.895 0.00 0.00 0.00 4.85
945 968 0.669318 CGTTTACTTCTGCCGCCTGA 60.669 55.000 0.00 0.00 0.00 3.86
970 993 6.083630 TCTTGTTGCGATTACTGTTATTTGC 58.916 36.000 0.00 0.00 0.00 3.68
1137 1177 3.503438 GGCCAAGTGCTACGTAAGTTCC 61.503 54.545 0.00 0.00 45.83 3.62
1184 1231 1.074319 GCGCGTAAGGTGTTCGATGA 61.074 55.000 8.43 0.00 38.28 2.92
1187 1234 2.471749 CGCGTAAGGTGTTCGATGAAAC 60.472 50.000 0.00 0.00 38.28 2.78
1205 1252 1.301874 CGCCTGACCGGGTGTTTTA 60.302 57.895 3.30 0.00 32.67 1.52
1208 1255 1.890489 GCCTGACCGGGTGTTTTATTT 59.110 47.619 3.30 0.00 0.00 1.40
1417 1490 3.948719 AGGAACAAGCCGCCGGAA 61.949 61.111 7.68 0.00 0.00 4.30
1517 1603 2.514013 CGCGCATACTCGTGGTTCC 61.514 63.158 8.75 0.00 36.43 3.62
1527 1613 0.602638 TCGTGGTTCCACTGATGCAC 60.603 55.000 18.07 0.00 35.03 4.57
1528 1614 0.884259 CGTGGTTCCACTGATGCACA 60.884 55.000 18.07 0.00 35.03 4.57
1529 1615 1.538047 GTGGTTCCACTGATGCACAT 58.462 50.000 13.97 0.00 34.42 3.21
1531 1617 0.813184 GGTTCCACTGATGCACATGG 59.187 55.000 0.00 0.00 0.00 3.66
1532 1618 1.538047 GTTCCACTGATGCACATGGT 58.462 50.000 0.00 0.00 32.78 3.55
1551 1643 7.004691 ACATGGTATCTACAGATGTAGTAGCA 58.995 38.462 22.11 22.11 46.08 3.49
1552 1644 7.671819 ACATGGTATCTACAGATGTAGTAGCAT 59.328 37.037 23.44 23.44 46.08 3.79
1553 1645 8.526978 CATGGTATCTACAGATGTAGTAGCATT 58.473 37.037 24.84 16.52 46.08 3.56
1554 1646 8.478775 TGGTATCTACAGATGTAGTAGCATTT 57.521 34.615 17.27 1.80 46.08 2.32
1555 1647 8.360390 TGGTATCTACAGATGTAGTAGCATTTG 58.640 37.037 17.27 0.00 46.08 2.32
1878 2078 3.454375 CCGCCTGGTTAGTATACACTTG 58.546 50.000 5.50 0.00 36.14 3.16
1882 2082 4.623171 GCCTGGTTAGTATACACTTGCAGT 60.623 45.833 5.50 0.00 36.14 4.40
1893 2093 1.884579 CACTTGCAGTGGAGCTTGATT 59.115 47.619 8.03 0.00 42.35 2.57
1928 2284 3.447229 TCATGTCCTAACGAGCTTGATCA 59.553 43.478 8.31 0.00 0.00 2.92
1929 2285 3.510388 TGTCCTAACGAGCTTGATCAG 57.490 47.619 8.31 1.28 0.00 2.90
1949 2500 9.269453 TGATCAGAGATGCTTAATTACATTCTG 57.731 33.333 0.00 14.19 35.31 3.02
1952 2503 7.440556 TCAGAGATGCTTAATTACATTCTGCTC 59.559 37.037 14.82 0.00 34.72 4.26
2000 2551 2.109126 GCATGAGTCAAGGGTCGGC 61.109 63.158 0.00 0.00 0.00 5.54
2033 2584 2.613026 ACAACAACATCCTGACGACA 57.387 45.000 0.00 0.00 0.00 4.35
2225 2776 0.110678 CATCCTCCATGCCATCTGCT 59.889 55.000 0.00 0.00 42.00 4.24
2405 2956 1.002773 GTTGATACCGGGTCACAGGTT 59.997 52.381 6.32 0.00 41.63 3.50
2565 3116 1.357420 TGGCACAGGTACATTCCCATT 59.643 47.619 0.00 0.00 0.00 3.16
2603 3154 9.317936 TCTTTGCAGATACTATCAACATGTTAG 57.682 33.333 11.53 8.04 0.00 2.34
2718 3278 1.098712 TCTGGAACGTGTTTGGCACC 61.099 55.000 0.00 0.00 44.97 5.01
2861 3422 0.508641 GCTGCGTTGTGTGTACAGAG 59.491 55.000 0.00 0.00 38.23 3.35
2870 3431 2.224042 TGTGTGTACAGAGAACAGGCTG 60.224 50.000 14.16 14.16 38.10 4.85
3026 3588 4.883585 TCAATTCTGAGTTGTGCTGTCTTT 59.116 37.500 11.89 0.00 0.00 2.52
3033 3595 4.119862 GAGTTGTGCTGTCTTTGTGTCTA 58.880 43.478 0.00 0.00 0.00 2.59
3095 3659 2.688507 AGACTGCTAATGGTGTTGTCG 58.311 47.619 0.00 0.00 0.00 4.35
3135 3710 1.218047 GTAGCGCACCACCAGATCA 59.782 57.895 11.47 0.00 0.00 2.92
3138 3713 2.103042 GCGCACCACCAGATCAGAC 61.103 63.158 0.30 0.00 0.00 3.51
3151 3726 1.630126 ATCAGACGCCATGCCCTTCT 61.630 55.000 0.00 0.00 0.00 2.85
3162 3737 3.474600 CATGCCCTTCTAGAATGAGTGG 58.525 50.000 5.44 3.17 0.00 4.00
3179 3754 3.886505 GAGTGGTATGGAGAAGTCGATCT 59.113 47.826 0.00 0.00 0.00 2.75
3196 3771 0.459585 TCTGCAAATACGCGGAGGAC 60.460 55.000 12.47 0.00 42.36 3.85
3223 3798 6.067217 ACAAAGAGTGTAATAAGGCCTGAT 57.933 37.500 5.69 0.00 39.29 2.90
3289 3864 6.463995 AGAGAAGATGAGGAAGTATGTCAC 57.536 41.667 0.00 0.00 0.00 3.67
3295 3870 2.632512 TGAGGAAGTATGTCACAGTGCA 59.367 45.455 0.00 0.00 0.00 4.57
3369 3945 9.604626 GAACATAAGTGAAGACAAAGAAGAATG 57.395 33.333 0.00 0.00 0.00 2.67
3457 4033 4.232221 GACTTATCAACTCCGTTCGTTCA 58.768 43.478 0.00 0.00 0.00 3.18
3472 4048 7.916450 TCCGTTCGTTCAAAAAGAAAATGTATT 59.084 29.630 0.00 0.00 38.13 1.89
3578 4154 1.838568 GAAGCGGTGGACAAACGACC 61.839 60.000 0.00 0.00 42.68 4.79
3579 4155 2.589442 GCGGTGGACAAACGACCA 60.589 61.111 0.00 0.00 45.67 4.02
3613 4190 2.346803 CCCAACATCTGGTTCAGTACG 58.653 52.381 0.00 0.00 44.76 3.67
3663 4240 0.034896 CGTGTAGGCACTCCACCTTT 59.965 55.000 0.00 0.00 42.60 3.11
3701 4302 3.232213 TGTAGAGGCTTTCGATCACAC 57.768 47.619 0.00 0.00 0.00 3.82
3712 4313 5.334879 GCTTTCGATCACACTTATGTTGGTT 60.335 40.000 0.00 0.00 36.72 3.67
3787 4388 0.539438 TTTTGAAGACCGCATGGCCT 60.539 50.000 3.32 0.00 39.70 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.828939 AGGAAGATCAACATGAACAGCAAA 59.171 37.500 0.00 0.00 0.00 3.68
2 3 4.025040 AGGAAGATCAACATGAACAGCA 57.975 40.909 0.00 0.00 0.00 4.41
3 4 5.065731 CCTTAGGAAGATCAACATGAACAGC 59.934 44.000 0.00 0.00 0.00 4.40
4 5 6.409704 TCCTTAGGAAGATCAACATGAACAG 58.590 40.000 0.00 0.00 0.00 3.16
5 6 6.373005 TCCTTAGGAAGATCAACATGAACA 57.627 37.500 0.00 0.00 0.00 3.18
6 7 7.050377 TCATCCTTAGGAAGATCAACATGAAC 58.950 38.462 4.56 0.00 34.34 3.18
7 8 7.199167 TCATCCTTAGGAAGATCAACATGAA 57.801 36.000 4.56 0.00 34.34 2.57
8 9 6.813293 TCATCCTTAGGAAGATCAACATGA 57.187 37.500 4.56 0.00 34.34 3.07
9 10 7.040617 CCATTCATCCTTAGGAAGATCAACATG 60.041 40.741 4.56 6.60 34.34 3.21
10 11 7.002879 CCATTCATCCTTAGGAAGATCAACAT 58.997 38.462 4.56 0.00 34.34 2.71
11 12 6.069440 ACCATTCATCCTTAGGAAGATCAACA 60.069 38.462 4.56 0.00 34.34 3.33
12 13 6.360618 ACCATTCATCCTTAGGAAGATCAAC 58.639 40.000 4.56 0.00 34.34 3.18
13 14 6.581388 ACCATTCATCCTTAGGAAGATCAA 57.419 37.500 4.56 0.00 34.34 2.57
14 15 6.581388 AACCATTCATCCTTAGGAAGATCA 57.419 37.500 4.56 0.00 34.34 2.92
15 16 8.980481 TTAAACCATTCATCCTTAGGAAGATC 57.020 34.615 4.56 0.00 34.34 2.75
16 17 9.942526 ATTTAAACCATTCATCCTTAGGAAGAT 57.057 29.630 4.56 0.00 34.34 2.40
27 28 8.655935 AGGGGATGATATTTAAACCATTCATC 57.344 34.615 15.98 15.98 39.00 2.92
53 54 9.916360 AACGGGTTCCTCTATCTTTTATTTAAT 57.084 29.630 0.00 0.00 0.00 1.40
58 59 9.377238 ACTATAACGGGTTCCTCTATCTTTTAT 57.623 33.333 0.00 0.00 0.00 1.40
59 60 8.773033 ACTATAACGGGTTCCTCTATCTTTTA 57.227 34.615 0.00 0.00 0.00 1.52
60 61 7.672122 ACTATAACGGGTTCCTCTATCTTTT 57.328 36.000 0.00 0.00 0.00 2.27
61 62 7.672122 AACTATAACGGGTTCCTCTATCTTT 57.328 36.000 0.00 0.00 0.00 2.52
62 63 8.773033 TTAACTATAACGGGTTCCTCTATCTT 57.227 34.615 0.00 0.00 0.00 2.40
63 64 8.773033 TTTAACTATAACGGGTTCCTCTATCT 57.227 34.615 0.00 0.00 0.00 1.98
64 65 8.854117 TCTTTAACTATAACGGGTTCCTCTATC 58.146 37.037 0.00 0.00 0.00 2.08
65 66 8.773033 TCTTTAACTATAACGGGTTCCTCTAT 57.227 34.615 0.00 0.00 0.00 1.98
66 67 8.636213 CATCTTTAACTATAACGGGTTCCTCTA 58.364 37.037 0.00 0.00 0.00 2.43
67 68 7.343833 TCATCTTTAACTATAACGGGTTCCTCT 59.656 37.037 0.00 0.00 0.00 3.69
68 69 7.495055 TCATCTTTAACTATAACGGGTTCCTC 58.505 38.462 0.00 0.00 0.00 3.71
69 70 7.427989 TCATCTTTAACTATAACGGGTTCCT 57.572 36.000 0.00 0.00 0.00 3.36
70 71 8.393366 GTTTCATCTTTAACTATAACGGGTTCC 58.607 37.037 0.00 0.00 0.00 3.62
71 72 9.159364 AGTTTCATCTTTAACTATAACGGGTTC 57.841 33.333 0.00 0.00 33.06 3.62
72 73 9.511272 AAGTTTCATCTTTAACTATAACGGGTT 57.489 29.630 0.00 0.00 33.66 4.11
73 74 9.511272 AAAGTTTCATCTTTAACTATAACGGGT 57.489 29.630 0.00 0.00 36.12 5.28
74 75 9.983804 GAAAGTTTCATCTTTAACTATAACGGG 57.016 33.333 10.81 0.00 37.70 5.28
91 92 6.652900 TGGATCGACATTGTATGAAAGTTTCA 59.347 34.615 20.14 20.14 45.01 2.69
92 93 7.072177 TGGATCGACATTGTATGAAAGTTTC 57.928 36.000 8.75 8.75 0.00 2.78
93 94 6.655003 ACTGGATCGACATTGTATGAAAGTTT 59.345 34.615 0.00 0.00 0.00 2.66
94 95 6.173339 ACTGGATCGACATTGTATGAAAGTT 58.827 36.000 0.00 0.00 0.00 2.66
95 96 5.734720 ACTGGATCGACATTGTATGAAAGT 58.265 37.500 0.00 0.00 0.00 2.66
96 97 6.092670 ACAACTGGATCGACATTGTATGAAAG 59.907 38.462 0.00 0.00 31.88 2.62
97 98 5.937540 ACAACTGGATCGACATTGTATGAAA 59.062 36.000 0.00 0.00 31.88 2.69
98 99 5.351189 CACAACTGGATCGACATTGTATGAA 59.649 40.000 0.00 0.00 32.39 2.57
99 100 4.869861 CACAACTGGATCGACATTGTATGA 59.130 41.667 0.00 0.00 32.39 2.15
100 101 4.494690 GCACAACTGGATCGACATTGTATG 60.495 45.833 0.00 0.00 32.39 2.39
101 102 3.623060 GCACAACTGGATCGACATTGTAT 59.377 43.478 0.00 0.00 32.39 2.29
102 103 3.000041 GCACAACTGGATCGACATTGTA 59.000 45.455 0.00 0.00 32.39 2.41
103 104 1.806542 GCACAACTGGATCGACATTGT 59.193 47.619 0.00 0.00 33.86 2.71
104 105 1.131126 GGCACAACTGGATCGACATTG 59.869 52.381 0.00 0.00 0.00 2.82
105 106 1.271325 TGGCACAACTGGATCGACATT 60.271 47.619 0.00 0.00 31.92 2.71
106 107 0.324614 TGGCACAACTGGATCGACAT 59.675 50.000 0.00 0.00 31.92 3.06
107 108 1.751563 TGGCACAACTGGATCGACA 59.248 52.632 0.00 0.00 31.92 4.35
108 109 4.693532 TGGCACAACTGGATCGAC 57.306 55.556 0.00 0.00 31.92 4.20
119 120 5.222079 TCTCAATACAAGTAGTTGGCACA 57.778 39.130 14.69 0.00 38.07 4.57
120 121 6.554334 TTTCTCAATACAAGTAGTTGGCAC 57.446 37.500 14.69 0.00 38.07 5.01
121 122 7.168219 AGATTTCTCAATACAAGTAGTTGGCA 58.832 34.615 14.69 2.59 38.07 4.92
122 123 7.617041 AGATTTCTCAATACAAGTAGTTGGC 57.383 36.000 14.69 0.00 38.07 4.52
143 144 9.745018 TCCTCAAATCTAACAAGAAAATGAGAT 57.255 29.630 12.93 0.00 35.05 2.75
144 145 9.573166 TTCCTCAAATCTAACAAGAAAATGAGA 57.427 29.630 12.93 0.00 35.05 3.27
145 146 9.617975 GTTCCTCAAATCTAACAAGAAAATGAG 57.382 33.333 0.00 0.00 33.36 2.90
146 147 9.130661 TGTTCCTCAAATCTAACAAGAAAATGA 57.869 29.630 0.00 0.00 0.00 2.57
147 148 9.918630 ATGTTCCTCAAATCTAACAAGAAAATG 57.081 29.630 0.00 0.00 35.63 2.32
148 149 9.918630 CATGTTCCTCAAATCTAACAAGAAAAT 57.081 29.630 0.00 0.00 35.63 1.82
149 150 7.867403 GCATGTTCCTCAAATCTAACAAGAAAA 59.133 33.333 0.00 0.00 35.63 2.29
150 151 7.231317 AGCATGTTCCTCAAATCTAACAAGAAA 59.769 33.333 0.00 0.00 35.63 2.52
151 152 6.716628 AGCATGTTCCTCAAATCTAACAAGAA 59.283 34.615 0.00 0.00 35.63 2.52
152 153 6.240894 AGCATGTTCCTCAAATCTAACAAGA 58.759 36.000 0.00 0.00 35.63 3.02
153 154 6.506500 AGCATGTTCCTCAAATCTAACAAG 57.493 37.500 0.00 0.00 35.63 3.16
154 155 6.899393 AAGCATGTTCCTCAAATCTAACAA 57.101 33.333 0.00 0.00 35.63 2.83
155 156 7.994425 TTAAGCATGTTCCTCAAATCTAACA 57.006 32.000 0.00 0.00 36.37 2.41
156 157 8.897752 AGATTAAGCATGTTCCTCAAATCTAAC 58.102 33.333 0.00 0.00 32.27 2.34
158 159 9.547753 GTAGATTAAGCATGTTCCTCAAATCTA 57.452 33.333 0.00 4.17 34.97 1.98
159 160 8.049117 TGTAGATTAAGCATGTTCCTCAAATCT 58.951 33.333 0.00 5.00 36.63 2.40
160 161 8.213518 TGTAGATTAAGCATGTTCCTCAAATC 57.786 34.615 0.00 0.00 0.00 2.17
161 162 8.462016 GTTGTAGATTAAGCATGTTCCTCAAAT 58.538 33.333 0.00 0.00 0.00 2.32
162 163 7.665559 AGTTGTAGATTAAGCATGTTCCTCAAA 59.334 33.333 0.00 0.00 0.00 2.69
163 164 7.119699 CAGTTGTAGATTAAGCATGTTCCTCAA 59.880 37.037 0.00 0.00 0.00 3.02
164 165 6.595326 CAGTTGTAGATTAAGCATGTTCCTCA 59.405 38.462 0.00 0.00 0.00 3.86
165 166 6.595716 ACAGTTGTAGATTAAGCATGTTCCTC 59.404 38.462 0.00 0.00 0.00 3.71
166 167 6.372659 CACAGTTGTAGATTAAGCATGTTCCT 59.627 38.462 0.00 0.00 0.00 3.36
167 168 6.403636 CCACAGTTGTAGATTAAGCATGTTCC 60.404 42.308 0.00 0.00 0.00 3.62
168 169 6.149474 ACCACAGTTGTAGATTAAGCATGTTC 59.851 38.462 0.00 0.00 0.00 3.18
169 170 6.003950 ACCACAGTTGTAGATTAAGCATGTT 58.996 36.000 0.00 0.00 0.00 2.71
170 171 5.560724 ACCACAGTTGTAGATTAAGCATGT 58.439 37.500 0.00 0.00 0.00 3.21
171 172 6.500684 AACCACAGTTGTAGATTAAGCATG 57.499 37.500 0.00 0.00 33.97 4.06
172 173 8.807948 ATTAACCACAGTTGTAGATTAAGCAT 57.192 30.769 0.00 0.00 36.68 3.79
173 174 9.727859 TTATTAACCACAGTTGTAGATTAAGCA 57.272 29.630 0.00 0.00 36.68 3.91
199 200 9.948964 ACGGTTTAGGTGTTCTAATATTACTTT 57.051 29.630 0.00 0.00 37.74 2.66
205 206 9.538508 GTTCATACGGTTTAGGTGTTCTAATAT 57.461 33.333 0.00 0.00 37.74 1.28
206 207 8.530311 TGTTCATACGGTTTAGGTGTTCTAATA 58.470 33.333 0.00 0.00 37.74 0.98
207 208 7.388437 TGTTCATACGGTTTAGGTGTTCTAAT 58.612 34.615 0.00 0.00 37.74 1.73
208 209 6.757237 TGTTCATACGGTTTAGGTGTTCTAA 58.243 36.000 0.00 0.00 36.26 2.10
209 210 6.343716 TGTTCATACGGTTTAGGTGTTCTA 57.656 37.500 0.00 0.00 0.00 2.10
210 211 5.217978 TGTTCATACGGTTTAGGTGTTCT 57.782 39.130 0.00 0.00 0.00 3.01
211 212 5.927954 TTGTTCATACGGTTTAGGTGTTC 57.072 39.130 0.00 0.00 0.00 3.18
212 213 6.887626 ATTTGTTCATACGGTTTAGGTGTT 57.112 33.333 0.00 0.00 0.00 3.32
213 214 6.887626 AATTTGTTCATACGGTTTAGGTGT 57.112 33.333 0.00 0.00 0.00 4.16
214 215 7.966204 CCTTAATTTGTTCATACGGTTTAGGTG 59.034 37.037 0.00 0.00 0.00 4.00
215 216 7.666804 ACCTTAATTTGTTCATACGGTTTAGGT 59.333 33.333 0.00 0.00 0.00 3.08
216 217 8.047413 ACCTTAATTTGTTCATACGGTTTAGG 57.953 34.615 0.00 0.00 0.00 2.69
217 218 9.337091 CAACCTTAATTTGTTCATACGGTTTAG 57.663 33.333 0.00 0.00 31.16 1.85
218 219 9.064706 TCAACCTTAATTTGTTCATACGGTTTA 57.935 29.630 0.00 0.00 31.16 2.01
219 220 7.942990 TCAACCTTAATTTGTTCATACGGTTT 58.057 30.769 0.00 0.00 31.16 3.27
220 221 7.513371 TCAACCTTAATTTGTTCATACGGTT 57.487 32.000 0.00 0.00 33.06 4.44
221 222 7.364970 GTTCAACCTTAATTTGTTCATACGGT 58.635 34.615 0.00 0.00 0.00 4.83
222 223 6.804783 GGTTCAACCTTAATTTGTTCATACGG 59.195 38.462 0.00 0.00 34.73 4.02
223 224 7.790861 GGTTCAACCTTAATTTGTTCATACG 57.209 36.000 0.00 0.00 34.73 3.06
239 240 6.220726 ACCATTGCAATATTAGGTTCAACC 57.779 37.500 12.53 0.00 38.99 3.77
240 241 9.646427 TTTAACCATTGCAATATTAGGTTCAAC 57.354 29.630 26.50 0.00 39.77 3.18
254 255 9.679661 TCAACTAAGAGATATTTAACCATTGCA 57.320 29.630 0.00 0.00 0.00 4.08
268 269 8.820831 CCCATCCAGTATTATCAACTAAGAGAT 58.179 37.037 0.00 0.00 0.00 2.75
269 270 7.256332 GCCCATCCAGTATTATCAACTAAGAGA 60.256 40.741 0.00 0.00 0.00 3.10
270 271 6.876257 GCCCATCCAGTATTATCAACTAAGAG 59.124 42.308 0.00 0.00 0.00 2.85
271 272 6.328934 TGCCCATCCAGTATTATCAACTAAGA 59.671 38.462 0.00 0.00 0.00 2.10
272 273 6.533730 TGCCCATCCAGTATTATCAACTAAG 58.466 40.000 0.00 0.00 0.00 2.18
273 274 6.508030 TGCCCATCCAGTATTATCAACTAA 57.492 37.500 0.00 0.00 0.00 2.24
274 275 6.044287 ACATGCCCATCCAGTATTATCAACTA 59.956 38.462 0.00 0.00 0.00 2.24
275 276 5.163055 ACATGCCCATCCAGTATTATCAACT 60.163 40.000 0.00 0.00 0.00 3.16
276 277 5.072741 ACATGCCCATCCAGTATTATCAAC 58.927 41.667 0.00 0.00 0.00 3.18
277 278 5.323382 ACATGCCCATCCAGTATTATCAA 57.677 39.130 0.00 0.00 0.00 2.57
278 279 4.999469 ACATGCCCATCCAGTATTATCA 57.001 40.909 0.00 0.00 0.00 2.15
279 280 7.944729 AATAACATGCCCATCCAGTATTATC 57.055 36.000 0.00 0.00 0.00 1.75
280 281 9.995594 ATAAATAACATGCCCATCCAGTATTAT 57.004 29.630 0.00 0.00 0.00 1.28
281 282 9.821240 AATAAATAACATGCCCATCCAGTATTA 57.179 29.630 0.00 0.00 0.00 0.98
282 283 8.725606 AATAAATAACATGCCCATCCAGTATT 57.274 30.769 0.00 0.00 0.00 1.89
283 284 8.725606 AAATAAATAACATGCCCATCCAGTAT 57.274 30.769 0.00 0.00 0.00 2.12
284 285 8.546083 AAAATAAATAACATGCCCATCCAGTA 57.454 30.769 0.00 0.00 0.00 2.74
285 286 7.436320 AAAATAAATAACATGCCCATCCAGT 57.564 32.000 0.00 0.00 0.00 4.00
286 287 7.769970 ACAAAAATAAATAACATGCCCATCCAG 59.230 33.333 0.00 0.00 0.00 3.86
287 288 7.628234 ACAAAAATAAATAACATGCCCATCCA 58.372 30.769 0.00 0.00 0.00 3.41
288 289 9.606631 TTACAAAAATAAATAACATGCCCATCC 57.393 29.630 0.00 0.00 0.00 3.51
306 307 9.979578 ACAATTCTAACAGCATCATTACAAAAA 57.020 25.926 0.00 0.00 0.00 1.94
307 308 9.979578 AACAATTCTAACAGCATCATTACAAAA 57.020 25.926 0.00 0.00 0.00 2.44
313 314 8.034804 GGGTTTAACAATTCTAACAGCATCATT 58.965 33.333 0.00 0.00 0.00 2.57
314 315 7.547227 GGGTTTAACAATTCTAACAGCATCAT 58.453 34.615 0.00 0.00 0.00 2.45
315 316 6.348950 CGGGTTTAACAATTCTAACAGCATCA 60.349 38.462 0.00 0.00 0.00 3.07
316 317 6.027749 CGGGTTTAACAATTCTAACAGCATC 58.972 40.000 0.00 0.00 0.00 3.91
317 318 5.475564 ACGGGTTTAACAATTCTAACAGCAT 59.524 36.000 0.00 0.00 0.00 3.79
318 319 4.822896 ACGGGTTTAACAATTCTAACAGCA 59.177 37.500 0.00 0.00 0.00 4.41
319 320 5.366829 ACGGGTTTAACAATTCTAACAGC 57.633 39.130 0.00 0.00 0.00 4.40
320 321 8.314143 TCTAACGGGTTTAACAATTCTAACAG 57.686 34.615 0.00 0.00 0.00 3.16
321 322 8.674263 TTCTAACGGGTTTAACAATTCTAACA 57.326 30.769 0.00 0.00 0.00 2.41
324 325 9.504708 TCATTTCTAACGGGTTTAACAATTCTA 57.495 29.630 0.00 0.00 0.00 2.10
325 326 8.398878 TCATTTCTAACGGGTTTAACAATTCT 57.601 30.769 0.00 0.00 0.00 2.40
326 327 9.634163 ATTCATTTCTAACGGGTTTAACAATTC 57.366 29.630 0.00 0.00 0.00 2.17
327 328 9.418045 CATTCATTTCTAACGGGTTTAACAATT 57.582 29.630 0.00 0.00 0.00 2.32
328 329 8.581578 ACATTCATTTCTAACGGGTTTAACAAT 58.418 29.630 0.00 0.00 0.00 2.71
329 330 7.863375 CACATTCATTTCTAACGGGTTTAACAA 59.137 33.333 0.00 0.00 0.00 2.83
330 331 7.228906 TCACATTCATTTCTAACGGGTTTAACA 59.771 33.333 0.00 0.00 0.00 2.41
331 332 7.586747 TCACATTCATTTCTAACGGGTTTAAC 58.413 34.615 0.00 0.00 0.00 2.01
332 333 7.747155 TCACATTCATTTCTAACGGGTTTAA 57.253 32.000 0.00 0.00 0.00 1.52
333 334 7.931578 ATCACATTCATTTCTAACGGGTTTA 57.068 32.000 0.00 0.00 0.00 2.01
334 335 6.834168 ATCACATTCATTTCTAACGGGTTT 57.166 33.333 0.00 0.00 0.00 3.27
335 336 7.931578 TTATCACATTCATTTCTAACGGGTT 57.068 32.000 0.00 0.00 0.00 4.11
336 337 7.993183 AGATTATCACATTCATTTCTAACGGGT 59.007 33.333 0.00 0.00 0.00 5.28
337 338 8.383318 AGATTATCACATTCATTTCTAACGGG 57.617 34.615 0.00 0.00 0.00 5.28
338 339 9.655769 CAAGATTATCACATTCATTTCTAACGG 57.344 33.333 0.00 0.00 0.00 4.44
343 344 9.778993 CGTTTCAAGATTATCACATTCATTTCT 57.221 29.630 0.00 0.00 0.00 2.52
344 345 9.559958 ACGTTTCAAGATTATCACATTCATTTC 57.440 29.630 0.00 0.00 0.00 2.17
347 348 9.988350 GTTACGTTTCAAGATTATCACATTCAT 57.012 29.630 0.00 0.00 0.00 2.57
348 349 8.447833 GGTTACGTTTCAAGATTATCACATTCA 58.552 33.333 0.00 0.00 0.00 2.57
349 350 8.447833 TGGTTACGTTTCAAGATTATCACATTC 58.552 33.333 0.00 0.00 0.00 2.67
350 351 8.330466 TGGTTACGTTTCAAGATTATCACATT 57.670 30.769 0.00 0.00 0.00 2.71
351 352 7.915293 TGGTTACGTTTCAAGATTATCACAT 57.085 32.000 0.00 0.00 0.00 3.21
352 353 7.915293 ATGGTTACGTTTCAAGATTATCACA 57.085 32.000 0.00 0.00 0.00 3.58
353 354 7.908601 GGAATGGTTACGTTTCAAGATTATCAC 59.091 37.037 0.00 0.00 0.00 3.06
354 355 7.608376 TGGAATGGTTACGTTTCAAGATTATCA 59.392 33.333 0.00 0.00 28.08 2.15
355 356 7.981142 TGGAATGGTTACGTTTCAAGATTATC 58.019 34.615 0.00 0.00 28.08 1.75
356 357 7.931578 TGGAATGGTTACGTTTCAAGATTAT 57.068 32.000 0.00 0.00 28.08 1.28
357 358 7.931578 ATGGAATGGTTACGTTTCAAGATTA 57.068 32.000 0.00 0.00 34.84 1.75
358 359 6.834168 ATGGAATGGTTACGTTTCAAGATT 57.166 33.333 0.00 0.00 34.84 2.40
359 360 6.659242 AGAATGGAATGGTTACGTTTCAAGAT 59.341 34.615 0.00 0.00 34.84 2.40
360 361 6.001460 AGAATGGAATGGTTACGTTTCAAGA 58.999 36.000 0.00 0.00 34.84 3.02
361 362 6.254281 AGAATGGAATGGTTACGTTTCAAG 57.746 37.500 0.00 0.00 34.84 3.02
362 363 7.608376 TGATAGAATGGAATGGTTACGTTTCAA 59.392 33.333 0.00 0.00 34.84 2.69
363 364 7.106890 TGATAGAATGGAATGGTTACGTTTCA 58.893 34.615 0.00 0.00 35.62 2.69
364 365 7.548196 TGATAGAATGGAATGGTTACGTTTC 57.452 36.000 0.00 0.00 0.00 2.78
365 366 7.931578 TTGATAGAATGGAATGGTTACGTTT 57.068 32.000 0.00 0.00 0.00 3.60
366 367 7.931578 TTTGATAGAATGGAATGGTTACGTT 57.068 32.000 0.00 0.00 0.00 3.99
367 368 9.793259 ATATTTGATAGAATGGAATGGTTACGT 57.207 29.630 0.00 0.00 0.00 3.57
370 371 9.753674 GGGATATTTGATAGAATGGAATGGTTA 57.246 33.333 0.00 0.00 0.00 2.85
371 372 7.675619 GGGGATATTTGATAGAATGGAATGGTT 59.324 37.037 0.00 0.00 0.00 3.67
372 373 7.184862 GGGGATATTTGATAGAATGGAATGGT 58.815 38.462 0.00 0.00 0.00 3.55
373 374 7.184161 TGGGGATATTTGATAGAATGGAATGG 58.816 38.462 0.00 0.00 0.00 3.16
374 375 8.526147 GTTGGGGATATTTGATAGAATGGAATG 58.474 37.037 0.00 0.00 0.00 2.67
375 376 8.459394 AGTTGGGGATATTTGATAGAATGGAAT 58.541 33.333 0.00 0.00 0.00 3.01
376 377 7.825709 AGTTGGGGATATTTGATAGAATGGAA 58.174 34.615 0.00 0.00 0.00 3.53
377 378 7.406620 AGTTGGGGATATTTGATAGAATGGA 57.593 36.000 0.00 0.00 0.00 3.41
378 379 9.586732 TTTAGTTGGGGATATTTGATAGAATGG 57.413 33.333 0.00 0.00 0.00 3.16
407 408 9.403583 GTGTTTAGTTGGGGATATTTGATAGAA 57.596 33.333 0.00 0.00 0.00 2.10
408 409 8.553153 TGTGTTTAGTTGGGGATATTTGATAGA 58.447 33.333 0.00 0.00 0.00 1.98
409 410 8.746052 TGTGTTTAGTTGGGGATATTTGATAG 57.254 34.615 0.00 0.00 0.00 2.08
410 411 9.184523 CTTGTGTTTAGTTGGGGATATTTGATA 57.815 33.333 0.00 0.00 0.00 2.15
411 412 7.893302 TCTTGTGTTTAGTTGGGGATATTTGAT 59.107 33.333 0.00 0.00 0.00 2.57
412 413 7.235079 TCTTGTGTTTAGTTGGGGATATTTGA 58.765 34.615 0.00 0.00 0.00 2.69
413 414 7.461182 TCTTGTGTTTAGTTGGGGATATTTG 57.539 36.000 0.00 0.00 0.00 2.32
414 415 7.728532 AGTTCTTGTGTTTAGTTGGGGATATTT 59.271 33.333 0.00 0.00 0.00 1.40
415 416 7.238710 AGTTCTTGTGTTTAGTTGGGGATATT 58.761 34.615 0.00 0.00 0.00 1.28
416 417 6.790319 AGTTCTTGTGTTTAGTTGGGGATAT 58.210 36.000 0.00 0.00 0.00 1.63
417 418 6.195600 AGTTCTTGTGTTTAGTTGGGGATA 57.804 37.500 0.00 0.00 0.00 2.59
418 419 5.061721 AGTTCTTGTGTTTAGTTGGGGAT 57.938 39.130 0.00 0.00 0.00 3.85
419 420 4.513406 AGTTCTTGTGTTTAGTTGGGGA 57.487 40.909 0.00 0.00 0.00 4.81
420 421 6.095720 TGTTTAGTTCTTGTGTTTAGTTGGGG 59.904 38.462 0.00 0.00 0.00 4.96
421 422 7.090953 TGTTTAGTTCTTGTGTTTAGTTGGG 57.909 36.000 0.00 0.00 0.00 4.12
428 429 9.965824 CCATTCTTATGTTTAGTTCTTGTGTTT 57.034 29.630 0.00 0.00 0.00 2.83
429 430 9.349713 TCCATTCTTATGTTTAGTTCTTGTGTT 57.650 29.630 0.00 0.00 0.00 3.32
430 431 8.918202 TCCATTCTTATGTTTAGTTCTTGTGT 57.082 30.769 0.00 0.00 0.00 3.72
431 432 9.612620 GTTCCATTCTTATGTTTAGTTCTTGTG 57.387 33.333 0.00 0.00 0.00 3.33
432 433 8.793592 GGTTCCATTCTTATGTTTAGTTCTTGT 58.206 33.333 0.00 0.00 0.00 3.16
433 434 7.962918 CGGTTCCATTCTTATGTTTAGTTCTTG 59.037 37.037 0.00 0.00 0.00 3.02
434 435 7.881232 TCGGTTCCATTCTTATGTTTAGTTCTT 59.119 33.333 0.00 0.00 0.00 2.52
435 436 7.391620 TCGGTTCCATTCTTATGTTTAGTTCT 58.608 34.615 0.00 0.00 0.00 3.01
436 437 7.605410 TCGGTTCCATTCTTATGTTTAGTTC 57.395 36.000 0.00 0.00 0.00 3.01
437 438 7.282450 GGATCGGTTCCATTCTTATGTTTAGTT 59.718 37.037 0.14 0.00 44.74 2.24
438 439 6.766467 GGATCGGTTCCATTCTTATGTTTAGT 59.234 38.462 0.14 0.00 44.74 2.24
439 440 7.190920 GGATCGGTTCCATTCTTATGTTTAG 57.809 40.000 0.14 0.00 44.74 1.85
453 454 1.668419 CACTGGAATGGATCGGTTCC 58.332 55.000 16.72 16.72 45.69 3.62
454 455 1.209504 TCCACTGGAATGGATCGGTTC 59.790 52.381 0.00 1.25 44.14 3.62
455 456 1.285280 TCCACTGGAATGGATCGGTT 58.715 50.000 0.00 0.00 44.14 4.44
456 457 3.006061 TCCACTGGAATGGATCGGT 57.994 52.632 0.00 0.00 44.14 4.69
465 466 3.826157 GTCATGGTTTCATTCCACTGGAA 59.174 43.478 13.08 13.08 46.39 3.53
466 467 3.181435 TGTCATGGTTTCATTCCACTGGA 60.181 43.478 0.00 0.00 37.81 3.86
467 468 3.156293 TGTCATGGTTTCATTCCACTGG 58.844 45.455 0.00 0.00 37.81 4.00
468 469 5.395682 AATGTCATGGTTTCATTCCACTG 57.604 39.130 0.00 0.00 37.81 3.66
469 470 5.649782 GAATGTCATGGTTTCATTCCACT 57.350 39.130 15.76 0.00 40.52 4.00
473 474 6.044682 GGAATGGAATGTCATGGTTTCATTC 58.955 40.000 20.55 20.55 43.54 2.67
474 475 5.484644 TGGAATGGAATGTCATGGTTTCATT 59.515 36.000 10.67 10.67 35.00 2.57
475 476 5.024785 TGGAATGGAATGTCATGGTTTCAT 58.975 37.500 0.00 0.00 0.00 2.57
476 477 4.220382 GTGGAATGGAATGTCATGGTTTCA 59.780 41.667 0.00 0.00 0.00 2.69
477 478 4.463891 AGTGGAATGGAATGTCATGGTTTC 59.536 41.667 0.00 0.00 0.00 2.78
478 479 4.419282 AGTGGAATGGAATGTCATGGTTT 58.581 39.130 0.00 0.00 0.00 3.27
479 480 4.051661 AGTGGAATGGAATGTCATGGTT 57.948 40.909 0.00 0.00 0.00 3.67
480 481 3.744940 AGTGGAATGGAATGTCATGGT 57.255 42.857 0.00 0.00 0.00 3.55
481 482 3.131577 CCAAGTGGAATGGAATGTCATGG 59.868 47.826 0.00 0.00 40.56 3.66
482 483 3.765511 ACCAAGTGGAATGGAATGTCATG 59.234 43.478 3.83 0.00 40.56 3.07
483 484 4.051661 ACCAAGTGGAATGGAATGTCAT 57.948 40.909 3.83 0.00 40.56 3.06
484 485 3.524095 ACCAAGTGGAATGGAATGTCA 57.476 42.857 3.83 0.00 40.56 3.58
485 486 3.193479 GGAACCAAGTGGAATGGAATGTC 59.807 47.826 3.83 0.00 40.56 3.06
486 487 3.165071 GGAACCAAGTGGAATGGAATGT 58.835 45.455 3.83 0.00 40.56 2.71
487 488 3.874392 GGAACCAAGTGGAATGGAATG 57.126 47.619 3.83 0.00 40.56 2.67
503 504 1.542328 GGGTGCATTTGGTTTGGGAAC 60.542 52.381 0.00 0.00 34.96 3.62
504 505 0.761802 GGGTGCATTTGGTTTGGGAA 59.238 50.000 0.00 0.00 0.00 3.97
505 506 0.105246 AGGGTGCATTTGGTTTGGGA 60.105 50.000 0.00 0.00 0.00 4.37
506 507 0.764271 AAGGGTGCATTTGGTTTGGG 59.236 50.000 0.00 0.00 0.00 4.12
507 508 3.760580 TTAAGGGTGCATTTGGTTTGG 57.239 42.857 0.00 0.00 0.00 3.28
508 509 4.892433 TCATTAAGGGTGCATTTGGTTTG 58.108 39.130 0.00 0.00 0.00 2.93
509 510 5.559148 TTCATTAAGGGTGCATTTGGTTT 57.441 34.783 0.00 0.00 0.00 3.27
510 511 5.248020 TCATTCATTAAGGGTGCATTTGGTT 59.752 36.000 0.00 0.00 0.00 3.67
511 512 4.776837 TCATTCATTAAGGGTGCATTTGGT 59.223 37.500 0.00 0.00 0.00 3.67
512 513 5.105228 AGTCATTCATTAAGGGTGCATTTGG 60.105 40.000 0.00 0.00 0.00 3.28
513 514 5.969423 AGTCATTCATTAAGGGTGCATTTG 58.031 37.500 0.00 0.00 0.00 2.32
514 515 7.902920 ATAGTCATTCATTAAGGGTGCATTT 57.097 32.000 0.00 0.00 0.00 2.32
515 516 7.560991 TGAATAGTCATTCATTAAGGGTGCATT 59.439 33.333 0.00 0.00 44.44 3.56
516 517 7.062322 TGAATAGTCATTCATTAAGGGTGCAT 58.938 34.615 0.00 0.00 44.44 3.96
517 518 6.422333 TGAATAGTCATTCATTAAGGGTGCA 58.578 36.000 0.00 0.00 44.44 4.57
518 519 6.942532 TGAATAGTCATTCATTAAGGGTGC 57.057 37.500 0.00 0.00 44.44 5.01
580 581 5.010012 GCGTGATGATATGGGAAAGGAAAAT 59.990 40.000 0.00 0.00 0.00 1.82
585 586 1.800586 CGCGTGATGATATGGGAAAGG 59.199 52.381 0.00 0.00 0.00 3.11
587 588 1.140052 ACCGCGTGATGATATGGGAAA 59.860 47.619 4.92 0.00 0.00 3.13
602 603 0.974383 AGAGGGGGATTATTACCGCG 59.026 55.000 0.00 0.00 43.74 6.46
604 605 3.261137 GGAAGAGAGGGGGATTATTACCG 59.739 52.174 0.00 0.00 0.00 4.02
611 612 0.327964 CCAGGGAAGAGAGGGGGATT 60.328 60.000 0.00 0.00 0.00 3.01
612 613 1.319799 CCAGGGAAGAGAGGGGGAT 59.680 63.158 0.00 0.00 0.00 3.85
613 614 2.787866 CCAGGGAAGAGAGGGGGA 59.212 66.667 0.00 0.00 0.00 4.81
614 615 3.093172 GCCAGGGAAGAGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
673 679 4.527157 GTAGGGGTCGACGACGCG 62.527 72.222 30.79 3.53 44.69 6.01
674 680 2.476534 TTTGTAGGGGTCGACGACGC 62.477 60.000 30.52 30.52 43.35 5.19
675 681 0.171903 ATTTGTAGGGGTCGACGACG 59.828 55.000 20.92 0.00 41.26 5.12
762 768 0.837272 ACGAGAGGGGAGAGAGAGAG 59.163 60.000 0.00 0.00 0.00 3.20
763 769 0.544223 CACGAGAGGGGAGAGAGAGA 59.456 60.000 0.00 0.00 0.00 3.10
764 770 1.101049 GCACGAGAGGGGAGAGAGAG 61.101 65.000 0.00 0.00 32.68 3.20
765 771 1.077357 GCACGAGAGGGGAGAGAGA 60.077 63.158 0.00 0.00 32.68 3.10
766 772 1.077068 AGCACGAGAGGGGAGAGAG 60.077 63.158 0.00 0.00 32.68 3.20
767 773 1.077357 GAGCACGAGAGGGGAGAGA 60.077 63.158 0.00 0.00 32.68 3.10
768 774 2.477176 CGAGCACGAGAGGGGAGAG 61.477 68.421 0.00 0.00 42.66 3.20
769 775 2.438614 CGAGCACGAGAGGGGAGA 60.439 66.667 0.00 0.00 42.66 3.71
833 843 0.103208 CAGAGACGGGGATCTTTCGG 59.897 60.000 0.00 0.00 0.00 4.30
944 967 7.044706 GCAAATAACAGTAATCGCAACAAGATC 60.045 37.037 0.00 0.00 0.00 2.75
945 968 6.747280 GCAAATAACAGTAATCGCAACAAGAT 59.253 34.615 0.00 0.00 0.00 2.40
970 993 3.629398 ACAGAAGAAACAGAACAGGCAAG 59.371 43.478 0.00 0.00 0.00 4.01
1137 1177 2.152297 CTGCGGGATCTCGGATCCAG 62.152 65.000 25.08 22.84 39.93 3.86
1184 1231 2.897172 AAACACCCGGTCAGGCGTTT 62.897 55.000 0.00 0.00 38.48 3.60
1187 1234 0.675522 ATAAAACACCCGGTCAGGCG 60.676 55.000 0.00 0.00 39.21 5.52
1208 1255 0.532573 TGCACGCACCAAAGGAAAAA 59.467 45.000 0.00 0.00 0.00 1.94
1214 1261 2.594303 TCCCTGCACGCACCAAAG 60.594 61.111 0.00 0.00 0.00 2.77
1218 1265 4.314440 TGTCTCCCTGCACGCACC 62.314 66.667 0.00 0.00 0.00 5.01
1517 1603 4.696455 TGTAGATACCATGTGCATCAGTG 58.304 43.478 0.00 0.00 0.00 3.66
1551 1643 5.144100 TCAGTAACCACCACCAAATCAAAT 58.856 37.500 0.00 0.00 0.00 2.32
1552 1644 4.537751 TCAGTAACCACCACCAAATCAAA 58.462 39.130 0.00 0.00 0.00 2.69
1553 1645 4.171878 TCAGTAACCACCACCAAATCAA 57.828 40.909 0.00 0.00 0.00 2.57
1554 1646 3.866703 TCAGTAACCACCACCAAATCA 57.133 42.857 0.00 0.00 0.00 2.57
1555 1647 4.079253 ACATCAGTAACCACCACCAAATC 58.921 43.478 0.00 0.00 0.00 2.17
1878 2078 4.503741 TTTTGTAATCAAGCTCCACTGC 57.496 40.909 0.00 0.00 34.88 4.40
1882 2082 8.801299 TGAACAATATTTTGTAATCAAGCTCCA 58.199 29.630 1.76 0.00 45.30 3.86
1883 2083 9.807649 ATGAACAATATTTTGTAATCAAGCTCC 57.192 29.630 1.76 0.00 45.30 4.70
1893 2093 9.438228 TCGTTAGGACATGAACAATATTTTGTA 57.562 29.630 0.00 0.00 45.30 2.41
1928 2284 7.441760 CAGAGCAGAATGTAATTAAGCATCTCT 59.558 37.037 0.00 0.00 36.07 3.10
1929 2285 7.226325 ACAGAGCAGAATGTAATTAAGCATCTC 59.774 37.037 0.00 0.00 36.07 2.75
2000 2551 1.236616 TGTTGTTCCATGCCAGCGAG 61.237 55.000 0.00 0.00 0.00 5.03
2081 2632 0.391130 GGTAAGTCTGCACGGCATGA 60.391 55.000 0.00 0.00 38.13 3.07
2405 2956 3.134623 TCTTGTTCCACAGAAGAGAGCAA 59.865 43.478 0.00 0.00 30.91 3.91
2565 3116 7.839907 AGTATCTGCAAAGAATTAAAATGGCA 58.160 30.769 0.00 0.00 0.00 4.92
2603 3154 1.263217 ACGATCAAACAACGAACAGGC 59.737 47.619 0.00 0.00 0.00 4.85
2846 3407 2.794910 CCTGTTCTCTGTACACACAACG 59.205 50.000 0.00 0.00 33.22 4.10
2870 3431 7.069085 TCAGCGGTATTATATACCCAGGTATTC 59.931 40.741 14.37 0.67 41.12 1.75
3095 3659 1.470098 CAGCCATAACCTGCAGTTCAC 59.530 52.381 13.81 0.00 40.05 3.18
3121 3696 1.807165 CGTCTGATCTGGTGGTGCG 60.807 63.158 0.00 0.00 0.00 5.34
3135 3710 0.687757 TCTAGAAGGGCATGGCGTCT 60.688 55.000 22.33 22.33 0.00 4.18
3138 3713 1.202687 TCATTCTAGAAGGGCATGGCG 60.203 52.381 16.56 0.00 0.00 5.69
3151 3726 5.299531 CGACTTCTCCATACCACTCATTCTA 59.700 44.000 0.00 0.00 0.00 2.10
3162 3737 3.717400 TGCAGATCGACTTCTCCATAC 57.283 47.619 0.00 0.00 0.00 2.39
3179 3754 1.448893 GGTCCTCCGCGTATTTGCA 60.449 57.895 4.92 0.00 34.15 4.08
3196 3771 4.157840 GGCCTTATTACACTCTTTGTTGGG 59.842 45.833 0.00 0.00 39.91 4.12
3223 3798 1.270305 CCGCTTCAGTTCAGTCCAAGA 60.270 52.381 0.00 0.00 0.00 3.02
3295 3870 6.403866 TTCTCCATTTTACTGCATTGTTGT 57.596 33.333 0.00 0.00 0.00 3.32
3307 3882 4.264352 ACCCTGCTCCATTTCTCCATTTTA 60.264 41.667 0.00 0.00 0.00 1.52
3312 3887 1.075601 AACCCTGCTCCATTTCTCCA 58.924 50.000 0.00 0.00 0.00 3.86
3369 3945 2.750948 ACTGTCCACATTCACACGTAC 58.249 47.619 0.00 0.00 0.00 3.67
3457 4033 5.764131 TGGTCGCGAATACATTTTCTTTTT 58.236 33.333 12.06 0.00 0.00 1.94
3472 4048 3.302610 CGTTTTAGTTTTCTTGGTCGCGA 60.303 43.478 3.71 3.71 0.00 5.87
3578 4154 2.574369 TGTTGGGGTAGTATGTCCCTTG 59.426 50.000 0.00 0.00 43.00 3.61
3579 4155 2.923908 TGTTGGGGTAGTATGTCCCTT 58.076 47.619 0.00 0.00 43.00 3.95
3613 4190 5.841810 CAGGTTAACTGGATCATCTCTCTC 58.158 45.833 5.42 0.00 43.70 3.20
3663 4240 6.061022 TCTACATCCATGGCTTTCAAGTAA 57.939 37.500 6.96 0.00 0.00 2.24
3701 4302 7.278424 CCATTAAAGCATCCAAACCAACATAAG 59.722 37.037 0.00 0.00 0.00 1.73
3712 4313 3.763360 CCACTCACCATTAAAGCATCCAA 59.237 43.478 0.00 0.00 0.00 3.53
3744 4345 3.610669 CCATCCCTCCTCTCGGCG 61.611 72.222 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.