Multiple sequence alignment - TraesCS5A01G272500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G272500 chr5A 100.000 5857 0 0 1 5857 482125856 482120000 0.000000e+00 10816.0
1 TraesCS5A01G272500 chr5A 97.619 42 1 0 2806 2847 688050668 688050709 8.140000e-09 73.1
2 TraesCS5A01G272500 chr5D 93.433 3274 131 33 338 3564 381916947 381913711 0.000000e+00 4778.0
3 TraesCS5A01G272500 chr5D 91.533 1063 50 16 4330 5370 381913096 381912052 0.000000e+00 1428.0
4 TraesCS5A01G272500 chr5D 91.252 663 25 15 3517 4170 381913728 381913090 0.000000e+00 872.0
5 TraesCS5A01G272500 chr5D 93.137 306 19 2 5552 5857 381912031 381911728 1.160000e-121 448.0
6 TraesCS5A01G272500 chr5D 94.758 248 9 2 1 248 381917191 381916948 3.310000e-102 383.0
7 TraesCS5A01G272500 chr5D 89.796 98 8 2 253 349 330393612 330393516 2.220000e-24 124.0
8 TraesCS5A01G272500 chr5D 90.426 94 9 0 254 347 530605393 530605300 2.220000e-24 124.0
9 TraesCS5A01G272500 chr5D 87.129 101 13 0 254 354 531995646 531995546 1.330000e-21 115.0
10 TraesCS5A01G272500 chr5D 100.000 29 0 0 2809 2837 441889212 441889184 3.000000e-03 54.7
11 TraesCS5A01G272500 chr5B 92.626 3282 146 36 338 3564 458151643 458148403 0.000000e+00 4632.0
12 TraesCS5A01G272500 chr5B 91.897 1086 45 12 4330 5376 458147671 458146590 0.000000e+00 1478.0
13 TraesCS5A01G272500 chr5B 92.073 656 29 8 3517 4172 458148300 458147668 0.000000e+00 902.0
14 TraesCS5A01G272500 chr5B 89.908 327 26 6 5537 5857 458146588 458146263 1.170000e-111 414.0
15 TraesCS5A01G272500 chr5B 94.355 248 7 4 1 248 458151884 458151644 1.990000e-99 374.0
16 TraesCS5A01G272500 chr5B 89.796 98 8 2 253 349 383513029 383512933 2.220000e-24 124.0
17 TraesCS5A01G272500 chr5B 97.778 45 1 0 2803 2847 75218477 75218433 1.750000e-10 78.7
18 TraesCS5A01G272500 chr2D 92.398 171 12 1 4169 4339 87407364 87407533 5.860000e-60 243.0
19 TraesCS5A01G272500 chr2D 91.000 100 8 1 251 349 114517663 114517564 3.680000e-27 134.0
20 TraesCS5A01G272500 chr2D 88.660 97 5 4 254 347 598951324 598951231 4.800000e-21 113.0
21 TraesCS5A01G272500 chr2D 86.139 101 12 2 251 349 344965740 344965840 2.230000e-19 108.0
22 TraesCS5A01G272500 chr2D 86.735 98 11 1 254 349 500365580 500365677 2.230000e-19 108.0
23 TraesCS5A01G272500 chr2D 85.859 99 10 3 254 349 500365675 500365578 1.040000e-17 102.0
24 TraesCS5A01G272500 chr2D 97.500 40 1 0 2807 2846 37765854 37765893 1.050000e-07 69.4
25 TraesCS5A01G272500 chr2D 94.737 38 0 2 2797 2833 560331627 560331663 2.280000e-04 58.4
26 TraesCS5A01G272500 chr6D 93.333 165 8 2 4169 4333 178849199 178849360 2.110000e-59 241.0
27 TraesCS5A01G272500 chr6D 84.483 174 24 3 5366 5537 467802260 467802432 1.010000e-37 169.0
28 TraesCS5A01G272500 chr6D 90.526 95 9 0 254 348 422072020 422072114 6.160000e-25 126.0
29 TraesCS5A01G272500 chr6D 87.000 100 10 3 251 348 422072117 422072019 6.210000e-20 110.0
30 TraesCS5A01G272500 chr6D 86.170 94 11 2 254 347 282138039 282138130 3.730000e-17 100.0
31 TraesCS5A01G272500 chr6D 85.263 95 12 2 254 347 7414519 7414612 4.830000e-16 97.1
32 TraesCS5A01G272500 chr6D 84.694 98 13 2 251 347 186542372 186542468 4.830000e-16 97.1
33 TraesCS5A01G272500 chr2A 91.011 178 14 2 4157 4332 70985760 70985583 7.590000e-59 239.0
34 TraesCS5A01G272500 chr2A 90.385 52 2 3 2795 2846 42702624 42702672 1.360000e-06 65.8
35 TraesCS5A01G272500 chr3D 91.813 171 13 1 4169 4339 459077430 459077261 2.730000e-58 237.0
36 TraesCS5A01G272500 chr3D 92.169 166 12 1 4166 4331 87925997 87926161 3.530000e-57 233.0
37 TraesCS5A01G272500 chr3D 89.617 183 18 1 4165 4347 313908766 313908585 1.270000e-56 231.0
38 TraesCS5A01G272500 chr3D 88.776 98 11 0 251 348 445019035 445019132 2.870000e-23 121.0
39 TraesCS5A01G272500 chr6B 91.379 174 12 3 4164 4335 119526802 119526974 9.810000e-58 235.0
40 TraesCS5A01G272500 chr4B 92.073 164 13 0 4168 4331 178081101 178081264 1.270000e-56 231.0
41 TraesCS5A01G272500 chr4B 97.727 44 1 0 2807 2850 47446264 47446307 6.290000e-10 76.8
42 TraesCS5A01G272500 chr2B 87.565 193 18 5 4166 4356 639927634 639927446 9.880000e-53 219.0
43 TraesCS5A01G272500 chr2B 87.037 162 20 1 5377 5537 585712655 585712494 1.300000e-41 182.0
44 TraesCS5A01G272500 chr2B 91.000 100 8 1 251 349 164901475 164901376 3.680000e-27 134.0
45 TraesCS5A01G272500 chr2B 87.156 109 12 2 241 348 717368514 717368621 7.970000e-24 122.0
46 TraesCS5A01G272500 chr7B 86.127 173 20 4 5377 5548 428829535 428829366 3.600000e-42 183.0
47 TraesCS5A01G272500 chr7B 90.426 94 9 0 254 347 533775230 533775323 2.220000e-24 124.0
48 TraesCS5A01G272500 chr7B 92.000 50 3 1 2806 2855 537165887 537165935 1.050000e-07 69.4
49 TraesCS5A01G272500 chr1A 88.158 152 18 0 5387 5538 394851132 394850981 1.300000e-41 182.0
50 TraesCS5A01G272500 chr1A 86.667 165 19 3 5376 5538 59114659 59114496 4.660000e-41 180.0
51 TraesCS5A01G272500 chr1A 93.617 94 6 0 254 347 438296426 438296519 2.200000e-29 141.0
52 TraesCS5A01G272500 chr4D 86.503 163 20 2 5377 5537 378280082 378279920 1.680000e-40 178.0
53 TraesCS5A01G272500 chr4D 84.158 101 13 3 251 349 477112223 477112322 1.740000e-15 95.3
54 TraesCS5A01G272500 chr4D 97.727 44 1 0 2807 2850 32492722 32492765 6.290000e-10 76.8
55 TraesCS5A01G272500 chr4D 95.122 41 2 0 2807 2847 436910402 436910362 1.360000e-06 65.8
56 TraesCS5A01G272500 chr7A 85.629 167 20 3 5377 5542 253801837 253801674 7.800000e-39 172.0
57 TraesCS5A01G272500 chr7A 85.057 174 21 5 5377 5548 476915811 476915641 7.800000e-39 172.0
58 TraesCS5A01G272500 chr7A 91.489 94 8 0 254 347 573432705 573432798 4.760000e-26 130.0
59 TraesCS5A01G272500 chr7A 90.625 96 9 0 253 348 82204213 82204118 1.710000e-25 128.0
60 TraesCS5A01G272500 chr7A 95.455 44 2 0 2806 2849 81135096 81135053 2.930000e-08 71.3
61 TraesCS5A01G272500 chr7A 92.000 50 3 1 2806 2855 579340276 579340228 1.050000e-07 69.4
62 TraesCS5A01G272500 chr4A 85.294 170 22 3 5376 5543 37306865 37307033 7.800000e-39 172.0
63 TraesCS5A01G272500 chr1D 94.681 94 5 0 254 347 338872383 338872476 4.730000e-31 147.0
64 TraesCS5A01G272500 chr1D 88.660 97 11 0 253 349 5423686 5423590 1.030000e-22 119.0
65 TraesCS5A01G272500 chr1D 83.673 98 14 2 251 347 189655465 189655561 2.250000e-14 91.6
66 TraesCS5A01G272500 chr1D 83.168 101 13 3 254 353 109479414 109479511 8.080000e-14 89.8
67 TraesCS5A01G272500 chr1D 96.875 32 1 0 2806 2837 443191168 443191137 3.000000e-03 54.7
68 TraesCS5A01G272500 chr1B 92.553 94 6 1 254 347 453340687 453340779 3.680000e-27 134.0
69 TraesCS5A01G272500 chr7D 91.489 94 8 0 254 347 506006952 506007045 4.760000e-26 130.0
70 TraesCS5A01G272500 chr7D 87.255 102 9 4 249 347 431879451 431879551 4.800000e-21 113.0
71 TraesCS5A01G272500 chrUn 85.263 95 13 1 253 347 87752416 87752323 4.830000e-16 97.1
72 TraesCS5A01G272500 chrUn 82.796 93 12 3 254 344 17059787 17059877 4.870000e-11 80.5
73 TraesCS5A01G272500 chrUn 82.796 93 12 3 254 344 336527263 336527353 4.870000e-11 80.5
74 TraesCS5A01G272500 chrUn 81.720 93 13 3 254 344 321281783 321281873 2.260000e-09 75.0
75 TraesCS5A01G272500 chrUn 81.720 93 13 3 254 344 330018396 330018486 2.260000e-09 75.0
76 TraesCS5A01G272500 chrUn 95.455 44 1 1 253 296 20852977 20852935 1.050000e-07 69.4
77 TraesCS5A01G272500 chrUn 100.000 34 0 0 251 284 298567506 298567473 4.900000e-06 63.9
78 TraesCS5A01G272500 chrUn 100.000 32 0 0 249 280 347112607 347112638 6.340000e-05 60.2
79 TraesCS5A01G272500 chrUn 100.000 32 0 0 249 280 352128665 352128634 6.340000e-05 60.2
80 TraesCS5A01G272500 chrUn 97.059 34 1 0 321 354 321212716 321212683 2.280000e-04 58.4
81 TraesCS5A01G272500 chrUn 92.500 40 1 2 252 289 31861208 31861247 8.200000e-04 56.5
82 TraesCS5A01G272500 chrUn 92.308 39 3 0 252 290 267647700 267647662 8.200000e-04 56.5
83 TraesCS5A01G272500 chrUn 100.000 29 0 0 321 349 126749886 126749914 3.000000e-03 54.7
84 TraesCS5A01G272500 chrUn 96.875 32 0 1 318 348 45884958 45884927 1.100000e-02 52.8
85 TraesCS5A01G272500 chrUn 100.000 28 0 0 322 349 360419547 360419574 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G272500 chr5A 482120000 482125856 5856 True 10816.0 10816 100.0000 1 5857 1 chr5A.!!$R1 5856
1 TraesCS5A01G272500 chr5D 381911728 381917191 5463 True 1581.8 4778 92.8226 1 5857 5 chr5D.!!$R5 5856
2 TraesCS5A01G272500 chr5B 458146263 458151884 5621 True 1560.0 4632 92.1718 1 5857 5 chr5B.!!$R3 5856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.0 0.0 0.0 0.00 4.00 F
1930 1947 0.394216 TAGCATCTTTGGCGGTGCAT 60.394 50.0 0.0 0.0 39.94 3.96 F
3750 3958 0.110509 GATGAGCGTGTGTGTGCTTG 60.111 55.0 0.0 0.0 42.60 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2011 0.107456 ATGGGCTCTCATGCTTACGG 59.893 55.0 0.00 0.0 0.00 4.02 R
3904 4119 0.179161 ACAGATGAGTCGCACGTAGC 60.179 55.0 0.00 0.0 40.87 3.58 R
5736 5998 0.032813 CCATTTGTGAGGGGCCATCT 60.033 55.0 20.14 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.013178 TGTGAAGAAAAATATCTGCAACTGACA 59.987 33.333 0.00 0.00 36.73 3.58
68 69 6.385649 TGTTCATCTGTTGTAAAGGGAAAC 57.614 37.500 0.00 0.00 0.00 2.78
94 95 6.088016 AGAAGATTGCAAATTTGTGTGCTA 57.912 33.333 19.03 3.38 41.48 3.49
167 168 2.296073 AATAAGGGGCGTTTTGGACA 57.704 45.000 0.00 0.00 0.00 4.02
248 249 8.977267 ATTGGGATTGAAAACTTGAAAAATCA 57.023 26.923 0.00 0.00 0.00 2.57
249 250 8.977267 TTGGGATTGAAAACTTGAAAAATCAT 57.023 26.923 0.00 0.00 0.00 2.45
260 261 9.533831 AAACTTGAAAAATCATATGTACTCCCT 57.466 29.630 1.90 0.00 0.00 4.20
261 262 8.738645 ACTTGAAAAATCATATGTACTCCCTC 57.261 34.615 1.90 0.00 0.00 4.30
262 263 7.775561 ACTTGAAAAATCATATGTACTCCCTCC 59.224 37.037 1.90 0.00 0.00 4.30
263 264 6.288294 TGAAAAATCATATGTACTCCCTCCG 58.712 40.000 1.90 0.00 0.00 4.63
264 265 5.888982 AAAATCATATGTACTCCCTCCGT 57.111 39.130 1.90 0.00 0.00 4.69
265 266 5.470047 AAATCATATGTACTCCCTCCGTC 57.530 43.478 1.90 0.00 0.00 4.79
266 267 2.872732 TCATATGTACTCCCTCCGTCC 58.127 52.381 1.90 0.00 0.00 4.79
267 268 1.893801 CATATGTACTCCCTCCGTCCC 59.106 57.143 0.00 0.00 0.00 4.46
268 269 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
269 270 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
270 271 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
271 272 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
272 273 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
273 274 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
274 275 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
275 276 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
276 277 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
277 278 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
278 279 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
279 280 5.850278 TCCCTCCGTCCCATAATATAAGAT 58.150 41.667 0.00 0.00 0.00 2.40
280 281 5.661312 TCCCTCCGTCCCATAATATAAGATG 59.339 44.000 0.00 0.00 0.00 2.90
281 282 5.425539 CCCTCCGTCCCATAATATAAGATGT 59.574 44.000 0.00 0.00 0.00 3.06
282 283 6.070194 CCCTCCGTCCCATAATATAAGATGTT 60.070 42.308 0.00 0.00 0.00 2.71
283 284 7.125204 CCCTCCGTCCCATAATATAAGATGTTA 59.875 40.741 0.00 0.00 0.00 2.41
284 285 8.705594 CCTCCGTCCCATAATATAAGATGTTAT 58.294 37.037 0.29 0.29 33.25 1.89
349 350 5.786121 ATTATGGGATGGAGGGAGTATTG 57.214 43.478 0.00 0.00 0.00 1.90
391 392 9.253832 TGATAAGTATTTTTGGAACATGATGGT 57.746 29.630 0.00 0.00 39.30 3.55
395 396 8.831715 AGTATTTTTGGAACATGATGGTTTTC 57.168 30.769 0.00 0.00 39.30 2.29
409 410 5.413213 TGATGGTTTTCTTGGGTGTTATACG 59.587 40.000 0.00 0.00 0.00 3.06
413 414 5.934043 GGTTTTCTTGGGTGTTATACGTACT 59.066 40.000 0.00 0.00 0.00 2.73
414 415 7.096551 GGTTTTCTTGGGTGTTATACGTACTA 58.903 38.462 0.00 0.00 0.00 1.82
415 416 7.063426 GGTTTTCTTGGGTGTTATACGTACTAC 59.937 40.741 0.00 0.00 0.00 2.73
416 417 6.832520 TTCTTGGGTGTTATACGTACTACA 57.167 37.500 0.00 2.18 0.00 2.74
417 418 6.441093 TCTTGGGTGTTATACGTACTACAG 57.559 41.667 10.82 1.85 0.00 2.74
418 419 5.945784 TCTTGGGTGTTATACGTACTACAGT 59.054 40.000 10.82 0.00 0.00 3.55
419 420 7.109501 TCTTGGGTGTTATACGTACTACAGTA 58.890 38.462 10.82 0.74 0.00 2.74
461 462 1.895131 CTTGGGTTAGCAAATGCACCT 59.105 47.619 12.85 0.00 45.16 4.00
501 502 8.771920 TGATTAGTAAACGATCATGTTTCACT 57.228 30.769 2.47 7.39 40.99 3.41
622 623 3.969117 TGTGCAACATTCTCTGTTCAC 57.031 42.857 0.00 10.80 45.67 3.18
638 639 8.421784 TCTCTGTTCACTCTATTGTTTACACTT 58.578 33.333 0.00 0.00 0.00 3.16
651 652 3.569194 TTACACTTGTCCAAAGGCTGA 57.431 42.857 0.00 0.00 0.00 4.26
668 669 3.577667 GCTGAGCATGTAATTTGCACAA 58.422 40.909 0.00 0.00 42.62 3.33
687 688 9.531942 TTGCACAATGATTGTAATATTTCATCC 57.468 29.630 10.89 0.00 43.23 3.51
723 724 4.449068 CGTGATCATTATGTACTTGGGAGC 59.551 45.833 0.00 0.00 0.00 4.70
745 748 5.717078 CCTCGTGGCTAATACTGGTATTA 57.283 43.478 11.26 11.26 37.07 0.98
746 749 6.282199 CCTCGTGGCTAATACTGGTATTAT 57.718 41.667 11.94 0.00 37.38 1.28
794 798 9.311916 CAAAATTATTGTTGGAAGACAGAACAA 57.688 29.630 0.00 0.00 42.22 2.83
805 809 6.152661 TGGAAGACAGAACAACTTCATTTTGT 59.847 34.615 0.00 0.00 40.89 2.83
865 869 4.040829 TGTTGATATCTATCAGTGGGCTGG 59.959 45.833 3.98 0.00 42.99 4.85
920 924 7.552687 ACATCATATTTGTTACATCACGGAGTT 59.447 33.333 0.00 0.00 41.61 3.01
921 925 7.534085 TCATATTTGTTACATCACGGAGTTC 57.466 36.000 0.00 0.00 41.61 3.01
930 934 8.471609 TGTTACATCACGGAGTTCTTATGATTA 58.528 33.333 0.00 0.00 41.61 1.75
1342 1347 1.947456 AGGAACCTTTTGACTGCGAAC 59.053 47.619 0.00 0.00 0.00 3.95
1536 1541 2.057137 TGCTTTTCTGTCACTGCCTT 57.943 45.000 0.00 0.00 0.00 4.35
1542 1547 6.264292 TGCTTTTCTGTCACTGCCTTTATTTA 59.736 34.615 0.00 0.00 0.00 1.40
1565 1570 3.423539 TGTCAGGCTATTTCTGCAAGT 57.576 42.857 0.00 0.00 33.76 3.16
1608 1614 5.307976 TGCCTGCCACTTTATCTCTATATGT 59.692 40.000 0.00 0.00 0.00 2.29
1648 1654 5.101628 TGCGCATGGAAATAACAGAAAATC 58.898 37.500 5.66 0.00 0.00 2.17
1656 1662 7.678837 TGGAAATAACAGAAAATCAGCCAATT 58.321 30.769 0.00 0.00 0.00 2.32
1696 1713 3.380004 CCACACCTTTTCTAAGTTGCACA 59.620 43.478 0.00 0.00 27.55 4.57
1701 1718 6.320164 ACACCTTTTCTAAGTTGCACACATAA 59.680 34.615 0.00 0.00 27.55 1.90
1753 1770 7.047460 TCAAGTCGGGAATATAGAAACTACC 57.953 40.000 0.00 0.00 0.00 3.18
1762 1779 9.384764 GGGAATATAGAAACTACCAAGCATATC 57.615 37.037 0.00 0.00 0.00 1.63
1789 1806 6.647895 TGTTACTTTTTCCTAACGGTGATCTC 59.352 38.462 0.00 0.00 0.00 2.75
1790 1807 4.576879 ACTTTTTCCTAACGGTGATCTCC 58.423 43.478 3.58 3.58 0.00 3.71
1885 1902 6.884295 TGGATGCTTAGTTTGTGCTAGTTTAT 59.116 34.615 0.00 0.00 0.00 1.40
1930 1947 0.394216 TAGCATCTTTGGCGGTGCAT 60.394 50.000 0.00 0.00 39.94 3.96
1944 1961 4.342772 GCGGTGCATAACTTGTATGAAAG 58.657 43.478 0.00 0.00 0.00 2.62
1947 1964 5.573146 GGTGCATAACTTGTATGAAAGAGC 58.427 41.667 0.00 0.00 0.00 4.09
1960 1977 1.817447 GAAAGAGCCAATTCTGCTGCT 59.183 47.619 3.79 0.00 39.69 4.24
1994 2011 3.004734 CGGATGAACCAAGGAAATATGGC 59.995 47.826 0.00 0.00 40.51 4.40
2008 2025 2.820059 TATGGCCGTAAGCATGAGAG 57.180 50.000 0.90 0.00 46.50 3.20
2021 2038 6.830873 AAGCATGAGAGCCCATTTATTATC 57.169 37.500 0.00 0.00 34.23 1.75
2071 2088 6.844388 TGAGGCTGGGAATAATTAGTCTTCTA 59.156 38.462 12.29 0.00 0.00 2.10
2072 2089 7.514127 TGAGGCTGGGAATAATTAGTCTTCTAT 59.486 37.037 12.29 0.00 0.00 1.98
2077 2094 9.838339 CTGGGAATAATTAGTCTTCTATGTGTT 57.162 33.333 12.29 0.00 0.00 3.32
2101 2118 1.927174 CCGCGGAGTACTGATTTTCTG 59.073 52.381 24.07 0.00 0.00 3.02
2124 2141 3.541996 TCAGTGAATCATACCGCACAT 57.458 42.857 0.00 0.00 33.85 3.21
2169 2186 0.187361 AGTTTTGCCAGCCCCTTGTA 59.813 50.000 0.00 0.00 0.00 2.41
2230 2247 1.131638 AGGTTTCAGTGCTGTCCTGA 58.868 50.000 10.42 0.00 37.18 3.86
2283 2304 9.679661 TCATAAAAGGATTAGTTTATGCTGACA 57.320 29.630 10.04 0.00 43.07 3.58
2319 2341 3.119743 ACACTCCATGATGACATTTTGCG 60.120 43.478 0.00 0.00 34.15 4.85
2334 2356 5.689961 ACATTTTGCGGTGTAAACATCTTTC 59.310 36.000 0.00 0.00 0.00 2.62
2380 2402 6.870439 TGACATTGCTATCGATTATTGGAGAG 59.130 38.462 1.71 0.00 0.00 3.20
2437 2459 6.265196 TCACTAAAAACAACTGCTGATTGGAT 59.735 34.615 0.00 0.00 0.00 3.41
2447 2469 4.825634 ACTGCTGATTGGATTCATGTATGG 59.174 41.667 0.00 0.00 0.00 2.74
2457 2479 3.415457 TTCATGTATGGCGCATATGGA 57.585 42.857 10.83 0.00 0.00 3.41
2480 2502 1.823169 TAAGGCGACAGAAGGCGGTT 61.823 55.000 0.00 0.00 39.33 4.44
2505 2527 7.391620 TGAAAACGTAGAATAGGTGGAAAGAT 58.608 34.615 0.00 0.00 38.98 2.40
2557 2580 1.817447 GCTGCAAAGATGAGAGGCTTT 59.183 47.619 0.00 0.00 34.86 3.51
2576 2599 6.027749 GGCTTTAGTTAACGGACATTTCATG 58.972 40.000 0.00 0.00 0.00 3.07
2739 2762 5.221864 CCCACCAAAATAGGTAGGGTAGATC 60.222 48.000 10.58 0.00 40.77 2.75
2788 2811 5.704978 GGAAATTTCTGGGCTTGCATTTTTA 59.295 36.000 17.42 0.00 0.00 1.52
2801 2824 8.720562 GGCTTGCATTTTTAACATTCTTGTAAT 58.279 29.630 0.00 0.00 34.06 1.89
2833 2856 6.833041 TCCCTCTGTAAACAAATGTAAGACA 58.167 36.000 0.00 0.00 0.00 3.41
2851 2874 9.485206 TGTAAGACATTTTAGGTCACTAAAGAC 57.515 33.333 0.00 0.00 46.59 3.01
2852 2875 9.708092 GTAAGACATTTTAGGTCACTAAAGACT 57.292 33.333 0.00 0.00 46.59 3.24
2938 2982 2.403252 ACATGTACCCTTGCTACAGC 57.597 50.000 0.00 0.00 42.50 4.40
2939 2983 1.909302 ACATGTACCCTTGCTACAGCT 59.091 47.619 0.00 0.00 42.66 4.24
2940 2984 2.283298 CATGTACCCTTGCTACAGCTG 58.717 52.381 13.48 13.48 42.66 4.24
2959 3003 3.303791 GCTGCTGTAATTACCGTAATGCC 60.304 47.826 13.01 0.06 0.00 4.40
2962 3006 3.881089 GCTGTAATTACCGTAATGCCCTT 59.119 43.478 13.01 0.00 0.00 3.95
2996 3040 6.137104 TCAGGTACTACACTTCTCCTACTT 57.863 41.667 0.00 0.00 36.02 2.24
3004 3048 3.759618 ACACTTCTCCTACTTCGAGGAAG 59.240 47.826 0.00 3.92 45.20 3.46
3010 3054 2.026169 TCCTACTTCGAGGAAGCTGAGA 60.026 50.000 0.00 0.00 42.90 3.27
3055 3099 6.858993 GGTACGTGATGCAAATTTACTCAAAA 59.141 34.615 0.00 0.00 0.00 2.44
3060 3104 7.410728 CGTGATGCAAATTTACTCAAAATGTCC 60.411 37.037 0.00 0.00 37.85 4.02
3105 3149 8.635765 TCTGTTGAGCTGTAATTTATTTCCTT 57.364 30.769 0.00 0.00 0.00 3.36
3181 3225 7.886629 ATGCTGCTTTCTTCTCCATATTTTA 57.113 32.000 0.00 0.00 0.00 1.52
3294 3338 1.933021 TGGTACACGAGAACTGGGAT 58.067 50.000 0.00 0.00 0.00 3.85
3354 3398 9.965902 ATTCCATAGTGAACTAGAAACAGATTT 57.034 29.630 0.00 0.00 0.00 2.17
3429 3477 2.498481 CGTGGGTCCCTATGAACACTTA 59.502 50.000 10.00 0.00 33.31 2.24
3438 3486 4.393990 CCCTATGAACACTTAACCGGAAAC 59.606 45.833 9.46 0.00 0.00 2.78
3473 3522 1.052694 AAGACCGCTACCATACCCCC 61.053 60.000 0.00 0.00 0.00 5.40
3490 3539 3.117512 ACCCCCTATGATGCACTTTAAGG 60.118 47.826 0.00 0.00 0.00 2.69
3545 3602 5.297029 GGTTCCCTCTTATTTGTGCTGATAC 59.703 44.000 0.00 0.00 0.00 2.24
3625 3833 1.067821 GTTCAAATTTGTGCACGGGGA 59.932 47.619 17.47 0.90 0.00 4.81
3675 3883 6.516739 TGGTGTCAAATTAGTTTTGTGTCA 57.483 33.333 0.00 0.00 44.25 3.58
3676 3884 7.106439 TGGTGTCAAATTAGTTTTGTGTCAT 57.894 32.000 0.00 0.00 44.25 3.06
3677 3885 6.977502 TGGTGTCAAATTAGTTTTGTGTCATG 59.022 34.615 0.00 0.00 44.25 3.07
3678 3886 6.074356 GGTGTCAAATTAGTTTTGTGTCATGC 60.074 38.462 0.00 0.00 44.25 4.06
3679 3887 6.475076 GTGTCAAATTAGTTTTGTGTCATGCA 59.525 34.615 0.00 0.00 44.25 3.96
3680 3888 7.009999 GTGTCAAATTAGTTTTGTGTCATGCAA 59.990 33.333 0.00 0.00 44.25 4.08
3681 3889 7.222417 TGTCAAATTAGTTTTGTGTCATGCAAG 59.778 33.333 0.00 0.00 44.25 4.01
3682 3890 7.222611 GTCAAATTAGTTTTGTGTCATGCAAGT 59.777 33.333 0.00 0.00 44.25 3.16
3735 3943 3.410628 AGGTGCATGGGCCGATGA 61.411 61.111 29.82 12.98 40.13 2.92
3745 3953 2.738521 GCCGATGAGCGTGTGTGT 60.739 61.111 0.00 0.00 38.67 3.72
3746 3954 3.015293 GCCGATGAGCGTGTGTGTG 62.015 63.158 0.00 0.00 38.67 3.82
3747 3955 2.471607 CGATGAGCGTGTGTGTGC 59.528 61.111 0.00 0.00 34.64 4.57
3748 3956 2.023771 CGATGAGCGTGTGTGTGCT 61.024 57.895 0.00 0.00 45.90 4.40
3749 3957 1.560004 CGATGAGCGTGTGTGTGCTT 61.560 55.000 0.00 0.00 42.60 3.91
3750 3958 0.110509 GATGAGCGTGTGTGTGCTTG 60.111 55.000 0.00 0.00 42.60 4.01
3751 3959 1.509644 ATGAGCGTGTGTGTGCTTGG 61.510 55.000 0.00 0.00 42.60 3.61
3752 3960 3.527360 GAGCGTGTGTGTGCTTGGC 62.527 63.158 0.00 0.00 42.60 4.52
3753 3961 3.585990 GCGTGTGTGTGCTTGGCT 61.586 61.111 0.00 0.00 0.00 4.75
3754 3962 2.328989 CGTGTGTGTGCTTGGCTG 59.671 61.111 0.00 0.00 0.00 4.85
3755 3963 2.026590 GTGTGTGTGCTTGGCTGC 59.973 61.111 0.00 0.00 0.00 5.25
3756 3964 2.124193 TGTGTGTGCTTGGCTGCT 60.124 55.556 0.00 0.00 0.00 4.24
3757 3965 1.753848 TGTGTGTGCTTGGCTGCTT 60.754 52.632 0.00 0.00 0.00 3.91
3758 3966 1.299620 GTGTGTGCTTGGCTGCTTG 60.300 57.895 0.00 0.00 0.00 4.01
3794 4002 2.093658 GCAGCTTTAGGGTAGTGCTACA 60.094 50.000 10.98 0.00 37.78 2.74
3803 4011 2.772515 GGGTAGTGCTACAGAAGGGAAT 59.227 50.000 10.98 0.00 37.78 3.01
3815 4023 6.101650 ACAGAAGGGAATTGGATGAAAAAC 57.898 37.500 0.00 0.00 0.00 2.43
3854 4069 2.103263 GGTGGATAAGGGTCTGTAGCTG 59.897 54.545 0.00 0.00 0.00 4.24
3862 4077 2.027745 AGGGTCTGTAGCTGACAACATG 60.028 50.000 0.00 0.00 37.70 3.21
3863 4078 2.289694 GGGTCTGTAGCTGACAACATGT 60.290 50.000 0.00 0.00 37.70 3.21
3885 4100 1.561076 TGCATGGTCAATACTGCCTCT 59.439 47.619 0.00 0.00 33.70 3.69
3889 4104 4.676196 GCATGGTCAATACTGCCTCTTTTG 60.676 45.833 0.00 0.00 0.00 2.44
3904 4119 7.202526 TGCCTCTTTTGTTGTCTCTAAAATTG 58.797 34.615 0.00 0.00 0.00 2.32
3938 4153 7.415765 CGACTCATCTGTCTATGGTCTAAACTT 60.416 40.741 0.00 0.00 35.00 2.66
4103 4318 3.503363 TGATGAAGCAACAACTAAGCCTG 59.497 43.478 0.00 0.00 0.00 4.85
4132 4347 0.249699 TGGAAGGTGTGTACGCTGTG 60.250 55.000 8.10 0.00 0.00 3.66
4177 4392 9.569122 TTTGTTAAAGCATAATATACTCCCTCC 57.431 33.333 0.00 0.00 0.00 4.30
4178 4393 7.383687 TGTTAAAGCATAATATACTCCCTCCG 58.616 38.462 0.00 0.00 0.00 4.63
4179 4394 7.015877 TGTTAAAGCATAATATACTCCCTCCGT 59.984 37.037 0.00 0.00 0.00 4.69
4180 4395 6.435292 AAAGCATAATATACTCCCTCCGTT 57.565 37.500 0.00 0.00 0.00 4.44
4181 4396 5.662674 AGCATAATATACTCCCTCCGTTC 57.337 43.478 0.00 0.00 0.00 3.95
4182 4397 4.466726 AGCATAATATACTCCCTCCGTTCC 59.533 45.833 0.00 0.00 0.00 3.62
4183 4398 4.466726 GCATAATATACTCCCTCCGTTCCT 59.533 45.833 0.00 0.00 0.00 3.36
4184 4399 5.655532 GCATAATATACTCCCTCCGTTCCTA 59.344 44.000 0.00 0.00 0.00 2.94
4185 4400 6.154021 GCATAATATACTCCCTCCGTTCCTAA 59.846 42.308 0.00 0.00 0.00 2.69
4186 4401 7.310237 GCATAATATACTCCCTCCGTTCCTAAA 60.310 40.741 0.00 0.00 0.00 1.85
4187 4402 8.759782 CATAATATACTCCCTCCGTTCCTAAAT 58.240 37.037 0.00 0.00 0.00 1.40
4189 4404 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
4192 4407 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4193 4408 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4194 4409 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4195 4410 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4196 4411 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4197 4412 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4198 4413 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4199 4414 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4226 4441 9.416794 AGATATTTCAATAAGAGACTACATGCG 57.583 33.333 0.00 0.00 0.00 4.73
4227 4442 6.851222 ATTTCAATAAGAGACTACATGCGG 57.149 37.500 0.00 0.00 0.00 5.69
4228 4443 5.592104 TTCAATAAGAGACTACATGCGGA 57.408 39.130 0.00 0.00 0.00 5.54
4229 4444 5.188327 TCAATAAGAGACTACATGCGGAG 57.812 43.478 0.00 0.00 0.00 4.63
4247 4462 5.149054 CGGAGCAAAATGAGTGAATCTAC 57.851 43.478 0.00 0.00 0.00 2.59
4248 4463 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4249 4464 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4294 4509 9.793259 ATATCCGTATGTTCTTTGTATTGGAAT 57.207 29.630 0.00 0.00 0.00 3.01
4295 4510 7.548196 TCCGTATGTTCTTTGTATTGGAATC 57.452 36.000 0.00 0.00 0.00 2.52
4296 4511 7.335627 TCCGTATGTTCTTTGTATTGGAATCT 58.664 34.615 0.00 0.00 0.00 2.40
4297 4512 7.494625 TCCGTATGTTCTTTGTATTGGAATCTC 59.505 37.037 0.00 0.00 0.00 2.75
4298 4513 7.495934 CCGTATGTTCTTTGTATTGGAATCTCT 59.504 37.037 0.00 0.00 0.00 3.10
4299 4514 9.529325 CGTATGTTCTTTGTATTGGAATCTCTA 57.471 33.333 0.00 0.00 0.00 2.43
4325 4540 7.625828 AAAGACTTATATTTGGAAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
4326 4541 5.681639 AGACTTATATTTGGAAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4327 4542 5.427481 AGACTTATATTTGGAAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4328 4543 5.681639 ACTTATATTTGGAAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4329 4544 5.191124 ACTTATATTTGGAAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4330 4545 6.384886 ACTTATATTTGGAAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4331 4546 2.845363 TTTGGAAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4332 4547 2.019807 TTGGAAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
4339 4554 7.068702 TGGAAACGGAGGGAGTACTATATAAA 58.931 38.462 0.00 0.00 0.00 1.40
4397 4617 9.607988 TTGTCGTAAATGGTAGTCATGAATTAT 57.392 29.630 0.00 0.00 35.99 1.28
4688 4928 1.611673 GCAAGTGAGGCTAAGGCAAGA 60.612 52.381 0.00 0.00 40.87 3.02
4697 4937 1.611673 GCTAAGGCAAGAGAACCAGCA 60.612 52.381 0.00 0.00 38.54 4.41
4776 5025 1.130054 AGCAGAACCAGGAGAGGCAA 61.130 55.000 0.00 0.00 0.00 4.52
4787 5036 3.698040 CAGGAGAGGCAAATGCTAACAAT 59.302 43.478 5.25 0.00 41.70 2.71
4790 5039 4.439289 GGAGAGGCAAATGCTAACAATCAC 60.439 45.833 5.25 0.00 41.70 3.06
4815 5064 2.037208 ATGGGCCGGAAACCAAGG 59.963 61.111 15.55 0.00 40.73 3.61
4967 5217 4.380841 TTTCTGTAATGCGAGTCCGTAT 57.619 40.909 0.00 0.00 42.79 3.06
5061 5311 5.907866 TGACTGAATGTTGTAGTATCGGA 57.092 39.130 0.00 0.00 0.00 4.55
5125 5377 4.093743 TGCTTATGTAGGAGACCTTGTCA 58.906 43.478 0.00 0.00 34.61 3.58
5141 5393 4.541085 TTGTCATGCAAGATTAGATGCG 57.459 40.909 0.00 0.00 45.47 4.73
5183 5435 3.641906 AGATACAGAAATGTCGGTAGGGG 59.358 47.826 2.29 0.00 37.76 4.79
5187 5439 3.028850 CAGAAATGTCGGTAGGGGACTA 58.971 50.000 0.00 0.00 43.67 2.59
5240 5492 9.898152 ACTCATCTATTATCTATCGAGACATGA 57.102 33.333 0.00 0.00 33.41 3.07
5271 5524 1.448893 TGGCGGTGCGTTATTCTCC 60.449 57.895 0.00 0.00 0.00 3.71
5273 5526 1.517694 GCGGTGCGTTATTCTCCGA 60.518 57.895 6.09 0.00 43.22 4.55
5280 5533 1.744374 CGTTATTCTCCGAGCTCGTC 58.256 55.000 32.41 12.04 37.74 4.20
5378 5633 7.492669 ACATCTATGCATGAACAACACTAGTAC 59.507 37.037 10.16 0.00 0.00 2.73
5379 5634 7.170393 TCTATGCATGAACAACACTAGTACT 57.830 36.000 10.16 0.00 0.00 2.73
5380 5635 7.258441 TCTATGCATGAACAACACTAGTACTC 58.742 38.462 10.16 0.00 0.00 2.59
5381 5636 4.566004 TGCATGAACAACACTAGTACTCC 58.434 43.478 0.00 0.00 0.00 3.85
5382 5637 3.933332 GCATGAACAACACTAGTACTCCC 59.067 47.826 0.00 0.00 0.00 4.30
5383 5638 4.504858 CATGAACAACACTAGTACTCCCC 58.495 47.826 0.00 0.00 0.00 4.81
5384 5639 2.901839 TGAACAACACTAGTACTCCCCC 59.098 50.000 0.00 0.00 0.00 5.40
5385 5640 2.708037 ACAACACTAGTACTCCCCCA 57.292 50.000 0.00 0.00 0.00 4.96
5386 5641 3.200958 ACAACACTAGTACTCCCCCAT 57.799 47.619 0.00 0.00 0.00 4.00
5387 5642 3.527937 ACAACACTAGTACTCCCCCATT 58.472 45.455 0.00 0.00 0.00 3.16
5388 5643 3.518303 ACAACACTAGTACTCCCCCATTC 59.482 47.826 0.00 0.00 0.00 2.67
5390 5645 2.318207 ACACTAGTACTCCCCCATTCCT 59.682 50.000 0.00 0.00 0.00 3.36
5391 5646 3.534747 ACACTAGTACTCCCCCATTCCTA 59.465 47.826 0.00 0.00 0.00 2.94
5392 5647 4.015918 ACACTAGTACTCCCCCATTCCTAA 60.016 45.833 0.00 0.00 0.00 2.69
5393 5648 4.966805 CACTAGTACTCCCCCATTCCTAAA 59.033 45.833 0.00 0.00 0.00 1.85
5394 5649 5.607171 CACTAGTACTCCCCCATTCCTAAAT 59.393 44.000 0.00 0.00 0.00 1.40
5395 5650 5.845065 ACTAGTACTCCCCCATTCCTAAATC 59.155 44.000 0.00 0.00 0.00 2.17
5396 5651 4.909284 AGTACTCCCCCATTCCTAAATCT 58.091 43.478 0.00 0.00 0.00 2.40
5397 5652 4.660771 AGTACTCCCCCATTCCTAAATCTG 59.339 45.833 0.00 0.00 0.00 2.90
5398 5653 3.747852 ACTCCCCCATTCCTAAATCTGA 58.252 45.455 0.00 0.00 0.00 3.27
5399 5654 3.718956 ACTCCCCCATTCCTAAATCTGAG 59.281 47.826 0.00 0.00 0.00 3.35
5400 5655 2.443255 TCCCCCATTCCTAAATCTGAGC 59.557 50.000 0.00 0.00 0.00 4.26
5401 5656 2.489802 CCCCCATTCCTAAATCTGAGCC 60.490 54.545 0.00 0.00 0.00 4.70
5402 5657 2.444766 CCCCATTCCTAAATCTGAGCCT 59.555 50.000 0.00 0.00 0.00 4.58
5403 5658 3.117360 CCCCATTCCTAAATCTGAGCCTT 60.117 47.826 0.00 0.00 0.00 4.35
5404 5659 4.140536 CCCATTCCTAAATCTGAGCCTTC 58.859 47.826 0.00 0.00 0.00 3.46
5405 5660 4.141298 CCCATTCCTAAATCTGAGCCTTCT 60.141 45.833 0.00 0.00 0.00 2.85
5406 5661 5.444176 CCATTCCTAAATCTGAGCCTTCTT 58.556 41.667 0.00 0.00 0.00 2.52
5407 5662 6.409695 CCCATTCCTAAATCTGAGCCTTCTTA 60.410 42.308 0.00 0.00 0.00 2.10
5408 5663 7.230027 CCATTCCTAAATCTGAGCCTTCTTAT 58.770 38.462 0.00 0.00 0.00 1.73
5409 5664 8.378565 CCATTCCTAAATCTGAGCCTTCTTATA 58.621 37.037 0.00 0.00 0.00 0.98
5410 5665 9.434420 CATTCCTAAATCTGAGCCTTCTTATAG 57.566 37.037 0.00 0.00 0.00 1.31
5411 5666 8.783660 TTCCTAAATCTGAGCCTTCTTATAGA 57.216 34.615 0.00 0.00 0.00 1.98
5412 5667 8.964533 TCCTAAATCTGAGCCTTCTTATAGAT 57.035 34.615 0.00 0.00 0.00 1.98
5413 5668 9.386122 TCCTAAATCTGAGCCTTCTTATAGATT 57.614 33.333 0.00 0.00 36.69 2.40
5414 5669 9.651913 CCTAAATCTGAGCCTTCTTATAGATTC 57.348 37.037 0.00 0.00 34.74 2.52
5415 5670 9.651913 CTAAATCTGAGCCTTCTTATAGATTCC 57.348 37.037 0.00 0.00 34.74 3.01
5416 5671 7.623999 AATCTGAGCCTTCTTATAGATTCCA 57.376 36.000 0.00 0.00 31.30 3.53
5417 5672 7.623999 ATCTGAGCCTTCTTATAGATTCCAA 57.376 36.000 0.00 0.00 0.00 3.53
5418 5673 7.623999 TCTGAGCCTTCTTATAGATTCCAAT 57.376 36.000 0.00 0.00 0.00 3.16
5419 5674 8.727100 TCTGAGCCTTCTTATAGATTCCAATA 57.273 34.615 0.00 0.00 0.00 1.90
5420 5675 8.589338 TCTGAGCCTTCTTATAGATTCCAATAC 58.411 37.037 0.00 0.00 0.00 1.89
5421 5676 8.262601 TGAGCCTTCTTATAGATTCCAATACA 57.737 34.615 0.00 0.00 0.00 2.29
5422 5677 8.370940 TGAGCCTTCTTATAGATTCCAATACAG 58.629 37.037 0.00 0.00 0.00 2.74
5423 5678 8.497910 AGCCTTCTTATAGATTCCAATACAGA 57.502 34.615 0.00 0.00 0.00 3.41
5424 5679 8.371699 AGCCTTCTTATAGATTCCAATACAGAC 58.628 37.037 0.00 0.00 0.00 3.51
5425 5680 8.371699 GCCTTCTTATAGATTCCAATACAGACT 58.628 37.037 0.00 0.00 0.00 3.24
5426 5681 9.703892 CCTTCTTATAGATTCCAATACAGACTG 57.296 37.037 0.00 0.00 0.00 3.51
5427 5682 9.202273 CTTCTTATAGATTCCAATACAGACTGC 57.798 37.037 1.25 0.00 0.00 4.40
5428 5683 8.250143 TCTTATAGATTCCAATACAGACTGCA 57.750 34.615 1.25 0.00 0.00 4.41
5429 5684 8.874156 TCTTATAGATTCCAATACAGACTGCAT 58.126 33.333 1.25 0.00 0.00 3.96
5430 5685 9.499479 CTTATAGATTCCAATACAGACTGCATT 57.501 33.333 1.25 0.00 0.00 3.56
5431 5686 7.976135 ATAGATTCCAATACAGACTGCATTC 57.024 36.000 1.25 0.00 0.00 2.67
5432 5687 4.813161 AGATTCCAATACAGACTGCATTCG 59.187 41.667 1.25 0.00 0.00 3.34
5433 5688 2.905075 TCCAATACAGACTGCATTCGG 58.095 47.619 1.25 2.71 0.00 4.30
5434 5689 2.499693 TCCAATACAGACTGCATTCGGA 59.500 45.455 11.00 8.55 0.00 4.55
5435 5690 2.868583 CCAATACAGACTGCATTCGGAG 59.131 50.000 11.00 2.48 36.48 4.63
5436 5691 2.231215 ATACAGACTGCATTCGGAGC 57.769 50.000 11.00 0.00 32.91 4.70
5437 5692 0.894835 TACAGACTGCATTCGGAGCA 59.105 50.000 11.00 0.00 40.19 4.26
5438 5693 0.035317 ACAGACTGCATTCGGAGCAA 59.965 50.000 11.00 0.00 42.17 3.91
5439 5694 1.159285 CAGACTGCATTCGGAGCAAA 58.841 50.000 0.00 0.00 42.17 3.68
5440 5695 1.536766 CAGACTGCATTCGGAGCAAAA 59.463 47.619 0.00 0.00 42.17 2.44
5441 5696 2.163010 CAGACTGCATTCGGAGCAAAAT 59.837 45.455 0.00 0.00 42.17 1.82
5442 5697 2.163010 AGACTGCATTCGGAGCAAAATG 59.837 45.455 0.00 0.00 42.17 2.32
5443 5698 2.161855 ACTGCATTCGGAGCAAAATGA 58.838 42.857 0.00 0.00 42.17 2.57
5444 5699 2.163010 ACTGCATTCGGAGCAAAATGAG 59.837 45.455 0.00 0.00 42.17 2.90
5445 5700 2.161855 TGCATTCGGAGCAAAATGAGT 58.838 42.857 0.00 0.00 39.39 3.41
5446 5701 2.095110 TGCATTCGGAGCAAAATGAGTG 60.095 45.455 0.00 0.00 39.39 3.51
5447 5702 2.162208 GCATTCGGAGCAAAATGAGTGA 59.838 45.455 0.00 0.00 35.35 3.41
5448 5703 3.366273 GCATTCGGAGCAAAATGAGTGAA 60.366 43.478 0.00 0.00 35.35 3.18
5449 5704 4.676196 GCATTCGGAGCAAAATGAGTGAAT 60.676 41.667 0.00 0.00 35.35 2.57
5450 5705 4.685169 TTCGGAGCAAAATGAGTGAATC 57.315 40.909 0.00 0.00 0.00 2.52
5451 5706 3.942829 TCGGAGCAAAATGAGTGAATCT 58.057 40.909 0.00 0.00 0.00 2.40
5452 5707 5.084818 TCGGAGCAAAATGAGTGAATCTA 57.915 39.130 0.00 0.00 0.00 1.98
5453 5708 5.674525 TCGGAGCAAAATGAGTGAATCTAT 58.325 37.500 0.00 0.00 0.00 1.98
5454 5709 6.816136 TCGGAGCAAAATGAGTGAATCTATA 58.184 36.000 0.00 0.00 0.00 1.31
5455 5710 6.701841 TCGGAGCAAAATGAGTGAATCTATAC 59.298 38.462 0.00 0.00 0.00 1.47
5456 5711 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
5457 5712 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
5458 5713 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
5459 5714 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
5485 5740 9.754382 AAAATACGTCTATATACATCCGTTTGT 57.246 29.630 0.00 0.00 0.00 2.83
5488 5743 7.502120 ACGTCTATATACATCCGTTTGTAGT 57.498 36.000 1.87 0.00 35.65 2.73
5489 5744 7.579726 ACGTCTATATACATCCGTTTGTAGTC 58.420 38.462 1.87 0.00 35.65 2.59
5490 5745 7.020010 CGTCTATATACATCCGTTTGTAGTCC 58.980 42.308 1.87 0.00 35.65 3.85
5491 5746 7.308169 CGTCTATATACATCCGTTTGTAGTCCA 60.308 40.741 1.87 0.00 35.65 4.02
5492 5747 8.521176 GTCTATATACATCCGTTTGTAGTCCAT 58.479 37.037 1.87 0.00 35.65 3.41
5493 5748 9.743581 TCTATATACATCCGTTTGTAGTCCATA 57.256 33.333 1.87 0.00 35.65 2.74
5495 5750 6.726490 ATACATCCGTTTGTAGTCCATAGT 57.274 37.500 1.87 0.00 35.65 2.12
5496 5751 7.828508 ATACATCCGTTTGTAGTCCATAGTA 57.171 36.000 1.87 0.00 35.65 1.82
5497 5752 6.534475 ACATCCGTTTGTAGTCCATAGTAA 57.466 37.500 0.00 0.00 0.00 2.24
5498 5753 6.938507 ACATCCGTTTGTAGTCCATAGTAAA 58.061 36.000 0.00 0.00 0.00 2.01
5499 5754 7.388437 ACATCCGTTTGTAGTCCATAGTAAAA 58.612 34.615 0.00 0.00 0.00 1.52
5500 5755 8.044908 ACATCCGTTTGTAGTCCATAGTAAAAT 58.955 33.333 0.00 0.00 0.00 1.82
5501 5756 8.548721 CATCCGTTTGTAGTCCATAGTAAAATC 58.451 37.037 0.00 0.00 0.00 2.17
5502 5757 7.844009 TCCGTTTGTAGTCCATAGTAAAATCT 58.156 34.615 0.00 0.00 0.00 2.40
5503 5758 7.977853 TCCGTTTGTAGTCCATAGTAAAATCTC 59.022 37.037 0.00 0.00 0.00 2.75
5504 5759 7.980099 CCGTTTGTAGTCCATAGTAAAATCTCT 59.020 37.037 0.00 0.00 0.00 3.10
5532 5787 8.581253 AAGGTCTTGTATTTAGAAATGAAGGG 57.419 34.615 0.00 0.00 0.00 3.95
5533 5788 7.928873 AGGTCTTGTATTTAGAAATGAAGGGA 58.071 34.615 0.00 0.00 0.00 4.20
5534 5789 8.049721 AGGTCTTGTATTTAGAAATGAAGGGAG 58.950 37.037 0.00 0.00 0.00 4.30
5535 5790 7.829706 GGTCTTGTATTTAGAAATGAAGGGAGT 59.170 37.037 0.00 0.00 0.00 3.85
5554 5809 7.371043 AGGGAGTATGATTCTAAACCCTAGAA 58.629 38.462 0.00 0.00 43.67 2.10
5562 5818 8.529424 TGATTCTAAACCCTAGAACTTCGATA 57.471 34.615 0.00 0.00 36.51 2.92
5581 5837 8.812147 TTCGATATCTATACATGAACAACACC 57.188 34.615 0.00 0.00 0.00 4.16
5591 5852 6.899393 ACATGAACAACACCAGTATCATTT 57.101 33.333 0.00 0.00 0.00 2.32
5592 5853 7.994425 ACATGAACAACACCAGTATCATTTA 57.006 32.000 0.00 0.00 0.00 1.40
5653 5915 5.062558 GCATGTAAAACACAATGATTCTGCC 59.937 40.000 0.00 0.00 41.55 4.85
5736 5998 4.138290 TCCTTGGATCACGTTTGCTAAAA 58.862 39.130 0.00 0.00 0.00 1.52
5775 6037 2.608752 GGCTCAATCAAGCAACACCTTG 60.609 50.000 0.00 0.00 44.35 3.61
5791 6053 0.321122 CTTGGTCAGGTCAGACTGGC 60.321 60.000 1.81 0.00 42.24 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.385033 GCTGTCAGTTGCAGATATTTTTCTT 58.615 36.000 0.93 0.00 36.12 2.52
41 42 4.074970 CCTTTACAACAGATGAACAGGCT 58.925 43.478 0.00 0.00 0.00 4.58
68 69 5.559417 GCACACAAATTTGCAATCTTCTTGG 60.559 40.000 18.12 2.08 38.68 3.61
69 70 5.235616 AGCACACAAATTTGCAATCTTCTTG 59.764 36.000 18.12 7.93 41.48 3.02
70 71 5.362263 AGCACACAAATTTGCAATCTTCTT 58.638 33.333 18.12 0.00 41.48 2.52
81 82 3.305608 GCCTCAGCTTAGCACACAAATTT 60.306 43.478 7.07 0.00 35.50 1.82
248 249 1.502039 TGGGACGGAGGGAGTACATAT 59.498 52.381 0.00 0.00 0.00 1.78
249 250 0.928505 TGGGACGGAGGGAGTACATA 59.071 55.000 0.00 0.00 0.00 2.29
250 251 0.264955 ATGGGACGGAGGGAGTACAT 59.735 55.000 0.00 0.00 0.00 2.29
251 252 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
252 253 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
253 254 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
254 255 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
255 256 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
256 257 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
257 258 5.425539 ACATCTTATATTATGGGACGGAGGG 59.574 44.000 0.00 0.00 0.00 4.30
258 259 6.546428 ACATCTTATATTATGGGACGGAGG 57.454 41.667 0.00 0.00 0.00 4.30
316 317 9.003145 CCCTCCATCCCATAATATAAGATGTTA 57.997 37.037 9.45 0.00 33.95 2.41
317 318 7.688534 TCCCTCCATCCCATAATATAAGATGTT 59.311 37.037 9.45 0.00 33.95 2.71
318 319 7.206251 TCCCTCCATCCCATAATATAAGATGT 58.794 38.462 9.45 0.00 33.95 3.06
319 320 7.349330 ACTCCCTCCATCCCATAATATAAGATG 59.651 40.741 5.26 5.26 35.24 2.90
320 321 7.442655 ACTCCCTCCATCCCATAATATAAGAT 58.557 38.462 0.00 0.00 0.00 2.40
321 322 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
322 323 8.805145 ATACTCCCTCCATCCCATAATATAAG 57.195 38.462 0.00 0.00 0.00 1.73
323 324 9.003145 CAATACTCCCTCCATCCCATAATATAA 57.997 37.037 0.00 0.00 0.00 0.98
324 325 8.135586 ACAATACTCCCTCCATCCCATAATATA 58.864 37.037 0.00 0.00 0.00 0.86
325 326 6.974247 ACAATACTCCCTCCATCCCATAATAT 59.026 38.462 0.00 0.00 0.00 1.28
326 327 6.339220 ACAATACTCCCTCCATCCCATAATA 58.661 40.000 0.00 0.00 0.00 0.98
327 328 5.173246 ACAATACTCCCTCCATCCCATAAT 58.827 41.667 0.00 0.00 0.00 1.28
328 329 4.577096 ACAATACTCCCTCCATCCCATAA 58.423 43.478 0.00 0.00 0.00 1.90
329 330 4.228237 ACAATACTCCCTCCATCCCATA 57.772 45.455 0.00 0.00 0.00 2.74
330 331 3.080660 ACAATACTCCCTCCATCCCAT 57.919 47.619 0.00 0.00 0.00 4.00
331 332 2.587060 ACAATACTCCCTCCATCCCA 57.413 50.000 0.00 0.00 0.00 4.37
332 333 3.953542 AAACAATACTCCCTCCATCCC 57.046 47.619 0.00 0.00 0.00 3.85
333 334 4.079730 AGGAAAACAATACTCCCTCCATCC 60.080 45.833 0.00 0.00 0.00 3.51
334 335 5.117406 AGGAAAACAATACTCCCTCCATC 57.883 43.478 0.00 0.00 0.00 3.51
335 336 5.536497 AAGGAAAACAATACTCCCTCCAT 57.464 39.130 0.00 0.00 0.00 3.41
336 337 5.076873 CAAAGGAAAACAATACTCCCTCCA 58.923 41.667 0.00 0.00 0.00 3.86
386 387 5.413523 ACGTATAACACCCAAGAAAACCATC 59.586 40.000 0.00 0.00 0.00 3.51
390 391 7.598493 TGTAGTACGTATAACACCCAAGAAAAC 59.402 37.037 0.00 0.00 0.00 2.43
391 392 7.665690 TGTAGTACGTATAACACCCAAGAAAA 58.334 34.615 0.00 0.00 0.00 2.29
392 393 7.039784 ACTGTAGTACGTATAACACCCAAGAAA 60.040 37.037 0.00 0.00 0.00 2.52
394 395 5.945784 ACTGTAGTACGTATAACACCCAAGA 59.054 40.000 0.00 0.00 0.00 3.02
395 396 6.199937 ACTGTAGTACGTATAACACCCAAG 57.800 41.667 0.00 0.00 0.00 3.61
436 437 3.066380 GCATTTGCTAACCCAAGTTTGG 58.934 45.455 3.85 3.85 42.13 3.28
501 502 7.364200 CACACAAATTTAGAACGGATAACCAA 58.636 34.615 0.00 0.00 35.59 3.67
591 592 2.696989 TGTTGCACATGAGATCGGAT 57.303 45.000 0.00 0.00 0.00 4.18
593 594 2.941064 AGAATGTTGCACATGAGATCGG 59.059 45.455 0.00 0.00 37.97 4.18
622 623 7.584987 CCTTTGGACAAGTGTAAACAATAGAG 58.415 38.462 0.00 0.00 0.00 2.43
638 639 0.111061 ACATGCTCAGCCTTTGGACA 59.889 50.000 0.00 0.00 0.00 4.02
651 652 6.167685 ACAATCATTGTGCAAATTACATGCT 58.832 32.000 0.98 0.00 43.48 3.79
701 702 4.757149 GGCTCCCAAGTACATAATGATCAC 59.243 45.833 0.00 0.00 0.00 3.06
723 724 4.602340 AATACCAGTATTAGCCACGAGG 57.398 45.455 1.16 0.00 34.27 4.63
745 748 4.002906 ACGTTGTCCAACTATGTGTGAT 57.997 40.909 8.40 0.00 39.08 3.06
746 749 3.462483 ACGTTGTCCAACTATGTGTGA 57.538 42.857 8.40 0.00 39.08 3.58
816 820 7.097192 AGAAGATAACTCGAATTAACTGCACA 58.903 34.615 4.91 0.00 0.00 4.57
865 869 6.757947 TGCAAATTTAATAGAAAGCAGATGCC 59.242 34.615 0.14 0.00 43.38 4.40
919 923 8.217111 TGCAGTTGGTATCCATAATCATAAGAA 58.783 33.333 0.00 0.00 31.53 2.52
920 924 7.744733 TGCAGTTGGTATCCATAATCATAAGA 58.255 34.615 0.00 0.00 31.53 2.10
921 925 7.120285 CCTGCAGTTGGTATCCATAATCATAAG 59.880 40.741 13.81 0.00 31.53 1.73
930 934 3.115390 AGTACCTGCAGTTGGTATCCAT 58.885 45.455 13.81 0.00 41.45 3.41
1059 1064 0.400213 TCTCAAATTGGTGGCCGTCT 59.600 50.000 0.00 0.00 0.00 4.18
1062 1067 1.818060 TCATTCTCAAATTGGTGGCCG 59.182 47.619 0.00 0.00 0.00 6.13
1148 1153 5.072055 TGTCTTCTCCAAATTCATCTTGCA 58.928 37.500 0.00 0.00 0.00 4.08
1342 1347 1.644786 GGTTTCCATTCACGGGCTCG 61.645 60.000 3.27 3.27 43.02 5.03
1536 1541 7.609918 TGCAGAAATAGCCTGACAAGTAAATAA 59.390 33.333 0.00 0.00 33.65 1.40
1542 1547 3.423539 TGCAGAAATAGCCTGACAAGT 57.576 42.857 0.00 0.00 33.65 3.16
1580 1586 5.116084 AGAGATAAAGTGGCAGGCAATTA 57.884 39.130 10.39 7.89 0.00 1.40
1581 1587 3.973425 AGAGATAAAGTGGCAGGCAATT 58.027 40.909 3.42 3.42 0.00 2.32
1628 1634 5.521372 GGCTGATTTTCTGTTATTTCCATGC 59.479 40.000 0.00 0.00 0.00 4.06
1648 1654 0.817013 ATGTGCGGGTTAATTGGCTG 59.183 50.000 0.00 0.00 0.00 4.85
1656 1662 1.624312 TGGTGTAGAATGTGCGGGTTA 59.376 47.619 0.00 0.00 0.00 2.85
1701 1718 7.383687 TCTTCGTAACTGAGACATAAATGGTT 58.616 34.615 0.00 0.00 0.00 3.67
1762 1779 6.548441 TCACCGTTAGGAAAAAGTAACATG 57.452 37.500 0.00 0.00 41.02 3.21
1835 1852 6.932901 ACAACAATCTAACATTTTGATGCG 57.067 33.333 0.00 0.00 29.30 4.73
1885 1902 6.666546 AGGGTAACTAAGCAACTAGTGTGATA 59.333 38.462 0.00 0.00 32.35 2.15
1892 1909 5.974108 TGCTAAGGGTAACTAAGCAACTAG 58.026 41.667 0.65 0.00 40.68 2.57
1930 1947 7.362056 GCAGAATTGGCTCTTTCATACAAGTTA 60.362 37.037 0.00 0.00 0.00 2.24
1944 1961 1.461559 AGAAGCAGCAGAATTGGCTC 58.538 50.000 0.00 0.00 40.23 4.70
1947 1964 3.655276 AACAAGAAGCAGCAGAATTGG 57.345 42.857 0.00 0.00 0.00 3.16
1960 1977 4.963373 TGGTTCATCCGAAGTAACAAGAA 58.037 39.130 0.00 0.00 39.52 2.52
1994 2011 0.107456 ATGGGCTCTCATGCTTACGG 59.893 55.000 0.00 0.00 0.00 4.02
2008 2025 6.857964 CAGAAACATGTCGATAATAAATGGGC 59.142 38.462 0.00 0.00 0.00 5.36
2057 2074 7.653713 CGGCTCAACACATAGAAGACTAATTAT 59.346 37.037 0.00 0.00 32.04 1.28
2071 2088 1.884075 TACTCCGCGGCTCAACACAT 61.884 55.000 23.51 0.00 0.00 3.21
2072 2089 2.566570 TACTCCGCGGCTCAACACA 61.567 57.895 23.51 0.00 0.00 3.72
2077 2094 1.320344 AATCAGTACTCCGCGGCTCA 61.320 55.000 23.51 1.50 0.00 4.26
2101 2118 2.032549 GTGCGGTATGATTCACTGATGC 60.033 50.000 0.00 0.00 0.00 3.91
2130 2147 3.070015 ACTTCAAGGGATGGCAAAAACTG 59.930 43.478 0.00 0.00 0.00 3.16
2140 2157 2.611224 GCTGGCAAAACTTCAAGGGATG 60.611 50.000 0.00 0.00 0.00 3.51
2230 2247 6.305272 TGCTTCAGAATAGAATCAGGAGTT 57.695 37.500 0.00 0.00 0.00 3.01
2283 2304 2.906389 TGGAGTGTCAAACTGATAGGCT 59.094 45.455 0.00 0.00 40.07 4.58
2319 2341 4.817517 TCCTCGAGAAAGATGTTTACACC 58.182 43.478 15.71 0.00 0.00 4.16
2352 2374 6.073369 CCAATAATCGATAGCAATGTCAACG 58.927 40.000 0.00 0.00 0.00 4.10
2380 2402 6.258068 CGGATCAACTAAAGTTATTGGTCTCC 59.742 42.308 0.00 5.38 36.32 3.71
2437 2459 3.415457 TCCATATGCGCCATACATGAA 57.585 42.857 4.18 0.00 0.00 2.57
2447 2469 2.225491 TCGCCTTAATTTCCATATGCGC 59.775 45.455 0.00 0.00 40.48 6.09
2457 2479 1.737793 CGCCTTCTGTCGCCTTAATTT 59.262 47.619 0.00 0.00 0.00 1.82
2480 2502 6.761312 TCTTTCCACCTATTCTACGTTTTCA 58.239 36.000 0.00 0.00 0.00 2.69
2505 2527 5.070446 ACTTGTGTGATGAGAACTAAGTGGA 59.930 40.000 0.00 0.00 30.18 4.02
2536 2559 0.394080 AGCCTCTCATCTTTGCAGCC 60.394 55.000 0.00 0.00 0.00 4.85
2739 2762 7.065563 CCACATTAATCAAGAGGACAAGAGAAG 59.934 40.741 0.00 0.00 0.00 2.85
2801 2824 8.768397 ACATTTGTTTACAGAGGGAGTATATCA 58.232 33.333 0.00 0.00 0.00 2.15
2847 2870 4.344390 ACTCCCTCTGACGTTTTAAGTCTT 59.656 41.667 0.00 0.00 39.24 3.01
2848 2871 3.896272 ACTCCCTCTGACGTTTTAAGTCT 59.104 43.478 0.00 0.00 39.24 3.24
2849 2872 4.254402 ACTCCCTCTGACGTTTTAAGTC 57.746 45.455 0.00 0.00 38.98 3.01
2850 2873 5.796424 TTACTCCCTCTGACGTTTTAAGT 57.204 39.130 0.00 0.00 0.00 2.24
2851 2874 7.701501 GTCTATTACTCCCTCTGACGTTTTAAG 59.298 40.741 0.00 0.00 0.00 1.85
2852 2875 7.177216 TGTCTATTACTCCCTCTGACGTTTTAA 59.823 37.037 0.00 0.00 0.00 1.52
2916 2958 3.621715 GCTGTAGCAAGGGTACATGTTAC 59.378 47.826 2.30 0.00 43.86 2.50
2938 2982 3.250040 GGGCATTACGGTAATTACAGCAG 59.750 47.826 17.16 7.77 0.00 4.24
2939 2983 3.118186 AGGGCATTACGGTAATTACAGCA 60.118 43.478 17.16 1.16 0.00 4.41
2940 2984 3.473625 AGGGCATTACGGTAATTACAGC 58.526 45.455 17.16 10.67 0.00 4.40
2959 3003 7.333672 GTGTAGTACCTGAAACCAAGATAAAGG 59.666 40.741 0.00 0.00 0.00 3.11
2962 3006 7.549147 AGTGTAGTACCTGAAACCAAGATAA 57.451 36.000 0.00 0.00 0.00 1.75
2996 3040 1.747924 CAGTGATCTCAGCTTCCTCGA 59.252 52.381 0.00 0.00 0.00 4.04
3004 3048 3.051081 ACTTCAACCAGTGATCTCAGC 57.949 47.619 0.00 0.00 35.70 4.26
3010 3054 3.244561 ACCGATCAACTTCAACCAGTGAT 60.245 43.478 0.00 0.00 35.70 3.06
3055 3099 6.012113 TGAAGATTGATGTTGAAAGGGACAT 58.988 36.000 0.00 0.00 39.09 3.06
3060 3104 7.154435 ACAGATGAAGATTGATGTTGAAAGG 57.846 36.000 0.00 0.00 0.00 3.11
3105 3149 9.299963 CATGTTTTGACTTCAGACACAAATTTA 57.700 29.630 0.00 0.00 33.38 1.40
3208 3252 7.930865 AGATGTACTCCGTTAGTAGTAACTAGG 59.069 40.741 16.51 11.88 41.42 3.02
3268 3312 4.098044 CCAGTTCTCGTGTACCACTCATAT 59.902 45.833 0.00 0.00 31.34 1.78
3294 3338 4.751767 AAAATGGTTCAGGAGTTTGCAA 57.248 36.364 0.00 0.00 0.00 4.08
3339 3383 8.796475 ACATATGTGCAAAATCTGTTTCTAGTT 58.204 29.630 7.78 0.00 0.00 2.24
3340 3384 8.239314 CACATATGTGCAAAATCTGTTTCTAGT 58.761 33.333 22.27 0.00 39.39 2.57
3341 3385 7.699391 CCACATATGTGCAAAATCTGTTTCTAG 59.301 37.037 27.27 6.40 44.34 2.43
3348 3392 4.987408 TCCCACATATGTGCAAAATCTG 57.013 40.909 27.27 12.68 44.34 2.90
3354 3398 2.512692 AGCTTCCCACATATGTGCAA 57.487 45.000 27.27 20.04 44.34 4.08
3429 3477 6.599356 ATTATTTGCCTAAAGTTTCCGGTT 57.401 33.333 0.00 0.00 0.00 4.44
3438 3486 7.027778 AGCGGTCTTAATTATTTGCCTAAAG 57.972 36.000 0.00 0.00 0.00 1.85
3473 3522 2.031682 GGCGCCTTAAAGTGCATCATAG 60.032 50.000 22.15 0.00 45.18 2.23
3490 3539 0.859882 GCCGTATAAAAGAGAGGCGC 59.140 55.000 0.00 0.00 34.94 6.53
3523 3580 6.313519 AGTATCAGCACAAATAAGAGGGAA 57.686 37.500 0.00 0.00 0.00 3.97
3545 3602 4.712337 ACGCTATAAGAGGGATCCCATTAG 59.288 45.833 32.69 22.36 40.59 1.73
3625 3833 2.146342 CATTGGCGACTTTCAGTCTGT 58.854 47.619 0.00 0.00 42.92 3.41
3702 3910 5.437289 TGCACCTGAGTTGAATTTGTAAG 57.563 39.130 0.00 0.00 0.00 2.34
3735 3943 3.585990 GCCAAGCACACACACGCT 61.586 61.111 0.00 0.00 41.20 5.07
3770 3978 1.740025 GCACTACCCTAAAGCTGCAAG 59.260 52.381 1.02 0.00 0.00 4.01
3794 4002 5.406163 AGGTTTTTCATCCAATTCCCTTCT 58.594 37.500 0.00 0.00 0.00 2.85
3815 4023 2.036475 CACCGTTGGATCAGATAGGAGG 59.964 54.545 0.00 0.00 0.00 4.30
3846 4054 2.096069 GCACACATGTTGTCAGCTACAG 60.096 50.000 0.00 0.00 39.87 2.74
3862 4077 1.133025 GGCAGTATTGACCATGCACAC 59.867 52.381 0.00 0.00 40.46 3.82
3863 4078 1.004628 AGGCAGTATTGACCATGCACA 59.995 47.619 0.00 0.00 40.46 4.57
3885 4100 7.642194 CACGTAGCAATTTTAGAGACAACAAAA 59.358 33.333 0.00 0.00 0.00 2.44
3889 4104 5.080068 GCACGTAGCAATTTTAGAGACAAC 58.920 41.667 5.30 0.00 44.79 3.32
3904 4119 0.179161 ACAGATGAGTCGCACGTAGC 60.179 55.000 0.00 0.00 40.87 3.58
3938 4153 4.235079 ACCTGCAAAGTATGGCATAGAA 57.765 40.909 7.61 0.00 39.65 2.10
3988 4203 3.583086 ACTGAGCTAATGTTACACCCTGT 59.417 43.478 0.00 0.00 0.00 4.00
4103 4318 1.676006 CACACCTTCCACTGGTTGAAC 59.324 52.381 0.00 0.00 35.28 3.18
4172 4387 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4173 4388 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4200 4415 9.416794 CGCATGTAGTCTCTTATTGAAATATCT 57.583 33.333 0.00 0.00 0.00 1.98
4201 4416 8.651588 CCGCATGTAGTCTCTTATTGAAATATC 58.348 37.037 0.00 0.00 0.00 1.63
4202 4417 8.367911 TCCGCATGTAGTCTCTTATTGAAATAT 58.632 33.333 0.00 0.00 0.00 1.28
4203 4418 7.722363 TCCGCATGTAGTCTCTTATTGAAATA 58.278 34.615 0.00 0.00 0.00 1.40
4204 4419 6.582636 TCCGCATGTAGTCTCTTATTGAAAT 58.417 36.000 0.00 0.00 0.00 2.17
4205 4420 5.972935 TCCGCATGTAGTCTCTTATTGAAA 58.027 37.500 0.00 0.00 0.00 2.69
4206 4421 5.592054 CTCCGCATGTAGTCTCTTATTGAA 58.408 41.667 0.00 0.00 0.00 2.69
4207 4422 4.499865 GCTCCGCATGTAGTCTCTTATTGA 60.500 45.833 0.00 0.00 0.00 2.57
4208 4423 3.738282 GCTCCGCATGTAGTCTCTTATTG 59.262 47.826 0.00 0.00 0.00 1.90
4209 4424 3.384789 TGCTCCGCATGTAGTCTCTTATT 59.615 43.478 0.00 0.00 31.71 1.40
4210 4425 2.959030 TGCTCCGCATGTAGTCTCTTAT 59.041 45.455 0.00 0.00 31.71 1.73
4211 4426 2.375146 TGCTCCGCATGTAGTCTCTTA 58.625 47.619 0.00 0.00 31.71 2.10
4212 4427 1.186200 TGCTCCGCATGTAGTCTCTT 58.814 50.000 0.00 0.00 31.71 2.85
4213 4428 1.186200 TTGCTCCGCATGTAGTCTCT 58.814 50.000 0.00 0.00 38.76 3.10
4214 4429 2.010145 TTTGCTCCGCATGTAGTCTC 57.990 50.000 0.00 0.00 38.76 3.36
4215 4430 2.472695 TTTTGCTCCGCATGTAGTCT 57.527 45.000 0.00 0.00 38.76 3.24
4216 4431 2.677836 TCATTTTGCTCCGCATGTAGTC 59.322 45.455 0.00 0.00 38.76 2.59
4217 4432 2.679837 CTCATTTTGCTCCGCATGTAGT 59.320 45.455 0.00 0.00 38.76 2.73
4218 4433 2.679837 ACTCATTTTGCTCCGCATGTAG 59.320 45.455 0.00 0.00 38.76 2.74
4219 4434 2.419673 CACTCATTTTGCTCCGCATGTA 59.580 45.455 0.00 0.00 38.76 2.29
4220 4435 1.200716 CACTCATTTTGCTCCGCATGT 59.799 47.619 0.00 0.00 38.76 3.21
4221 4436 1.469703 TCACTCATTTTGCTCCGCATG 59.530 47.619 0.00 0.00 38.76 4.06
4222 4437 1.825090 TCACTCATTTTGCTCCGCAT 58.175 45.000 0.00 0.00 38.76 4.73
4223 4438 1.603456 TTCACTCATTTTGCTCCGCA 58.397 45.000 0.00 0.00 36.47 5.69
4224 4439 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
4225 4440 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4226 4441 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4227 4442 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4268 4483 9.793259 ATTCCAATACAAAGAACATACGGATAT 57.207 29.630 0.00 0.00 0.00 1.63
4269 4484 9.268268 GATTCCAATACAAAGAACATACGGATA 57.732 33.333 0.00 0.00 0.00 2.59
4270 4485 7.993183 AGATTCCAATACAAAGAACATACGGAT 59.007 33.333 0.00 0.00 0.00 4.18
4271 4486 7.335627 AGATTCCAATACAAAGAACATACGGA 58.664 34.615 0.00 0.00 0.00 4.69
4272 4487 7.495934 AGAGATTCCAATACAAAGAACATACGG 59.504 37.037 0.00 0.00 0.00 4.02
4273 4488 8.425577 AGAGATTCCAATACAAAGAACATACG 57.574 34.615 0.00 0.00 0.00 3.06
4299 4514 8.520351 CCTCCGTTTCCAAATATAAGTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
4300 4515 7.122204 CCCTCCGTTTCCAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
4301 4516 6.602009 CCCTCCGTTTCCAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
4302 4517 6.069847 TCCCTCCGTTTCCAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
4303 4518 5.427481 TCCCTCCGTTTCCAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
4304 4519 5.677567 TCCCTCCGTTTCCAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
4305 4520 5.191124 ACTCCCTCCGTTTCCAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
4306 4521 5.681639 ACTCCCTCCGTTTCCAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
4307 4522 5.703730 ACTCCCTCCGTTTCCAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
4308 4523 5.901276 AGTACTCCCTCCGTTTCCAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
4309 4524 4.720273 AGTACTCCCTCCGTTTCCAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
4310 4525 4.098894 AGTACTCCCTCCGTTTCCAAATA 58.901 43.478 0.00 0.00 0.00 1.40
4311 4526 2.910977 AGTACTCCCTCCGTTTCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
4312 4527 2.332117 AGTACTCCCTCCGTTTCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
4313 4528 2.019807 AGTACTCCCTCCGTTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
4314 4529 2.905415 TAGTACTCCCTCCGTTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
4315 4530 7.232330 ACTTTATATAGTACTCCCTCCGTTTCC 59.768 40.741 0.00 0.00 0.00 3.13
4316 4531 8.175925 ACTTTATATAGTACTCCCTCCGTTTC 57.824 38.462 0.00 0.00 0.00 2.78
4317 4532 8.544687 AACTTTATATAGTACTCCCTCCGTTT 57.455 34.615 0.00 0.00 0.00 3.60
4318 4533 8.544687 AAACTTTATATAGTACTCCCTCCGTT 57.455 34.615 0.00 0.00 0.00 4.44
4319 4534 8.544687 AAAACTTTATATAGTACTCCCTCCGT 57.455 34.615 0.00 0.00 0.00 4.69
4320 4535 9.473640 GAAAAACTTTATATAGTACTCCCTCCG 57.526 37.037 0.00 0.00 0.00 4.63
4339 4554 7.751768 ATCTAGCAAAGCAGTAAGAAAAACT 57.248 32.000 0.00 0.00 0.00 2.66
4397 4617 7.815383 AGTTGGAATACTTGGATGGATAATCA 58.185 34.615 0.00 0.00 36.98 2.57
4412 4632 7.972277 TGAGTTCTCACGTTATAGTTGGAATAC 59.028 37.037 0.00 0.00 0.00 1.89
4417 4637 7.170998 AGTTTTGAGTTCTCACGTTATAGTTGG 59.829 37.037 1.72 0.00 0.00 3.77
4459 4680 5.520649 GTGTACTAGCCAATACTTCTCAAGC 59.479 44.000 0.00 0.00 0.00 4.01
4570 4810 6.227298 TGGTTTTGAAAAGCACCTGATAAA 57.773 33.333 17.47 0.00 33.36 1.40
4697 4937 1.009829 GCTTTTCGTCGGCATGAGAT 58.990 50.000 0.00 0.00 0.00 2.75
4776 5025 4.314961 TCAGACACGTGATTGTTAGCATT 58.685 39.130 25.01 0.00 0.00 3.56
4787 5036 2.662596 GGCCCATCAGACACGTGA 59.337 61.111 25.01 0.00 0.00 4.35
4790 5039 2.796483 TTTCCGGCCCATCAGACACG 62.796 60.000 0.00 0.00 0.00 4.49
4815 5064 3.894427 TCTCCATTCTGAGCATCCTCTAC 59.106 47.826 0.00 0.00 38.93 2.59
4967 5217 4.787551 CCTTGGTACACATATAAGGCCAA 58.212 43.478 5.01 0.00 39.29 4.52
5061 5311 1.128188 AAGGGTTCGACAGGGCTTCT 61.128 55.000 0.00 0.00 0.00 2.85
5099 5349 5.221541 ACAAGGTCTCCTACATAAGCATAGC 60.222 44.000 0.00 0.00 31.13 2.97
5125 5377 8.931385 AAAATAAAACGCATCTAATCTTGCAT 57.069 26.923 0.00 0.00 38.80 3.96
5183 5435 5.444613 CGACATACAGCACAACACAATAGTC 60.445 44.000 0.00 0.00 0.00 2.59
5187 5439 2.483877 CCGACATACAGCACAACACAAT 59.516 45.455 0.00 0.00 0.00 2.71
5240 5492 1.301716 CCGCCACTGCTACAACTGT 60.302 57.895 0.00 0.00 34.43 3.55
5297 5550 4.338012 TCATGCAGGCAAATCCTATATGG 58.662 43.478 0.00 0.00 45.52 2.74
5299 5552 5.198965 GGATCATGCAGGCAAATCCTATAT 58.801 41.667 22.14 1.69 45.52 0.86
5303 5556 4.568236 CATGGATCATGCAGGCAAATCCT 61.568 47.826 26.16 16.00 40.26 3.24
5304 5557 1.405872 TGGATCATGCAGGCAAATCC 58.594 50.000 22.43 22.43 40.14 3.01
5305 5558 3.026630 CATGGATCATGCAGGCAAATC 57.973 47.619 0.00 4.89 35.02 2.17
5343 5598 7.259882 TGTTCATGCATAGATGTGGAAATTTC 58.740 34.615 9.83 9.83 0.00 2.17
5353 5608 6.915544 ACTAGTGTTGTTCATGCATAGATG 57.084 37.500 0.00 0.00 0.00 2.90
5378 5633 3.497584 GCTCAGATTTAGGAATGGGGGAG 60.498 52.174 0.00 0.00 0.00 4.30
5379 5634 2.443255 GCTCAGATTTAGGAATGGGGGA 59.557 50.000 0.00 0.00 0.00 4.81
5380 5635 2.489802 GGCTCAGATTTAGGAATGGGGG 60.490 54.545 0.00 0.00 0.00 5.40
5381 5636 2.444766 AGGCTCAGATTTAGGAATGGGG 59.555 50.000 0.00 0.00 0.00 4.96
5382 5637 3.872459 AGGCTCAGATTTAGGAATGGG 57.128 47.619 0.00 0.00 0.00 4.00
5383 5638 5.046288 AGAAGGCTCAGATTTAGGAATGG 57.954 43.478 0.00 0.00 0.00 3.16
5384 5639 9.434420 CTATAAGAAGGCTCAGATTTAGGAATG 57.566 37.037 0.00 0.00 0.00 2.67
5385 5640 9.386122 TCTATAAGAAGGCTCAGATTTAGGAAT 57.614 33.333 0.00 0.00 0.00 3.01
5386 5641 8.783660 TCTATAAGAAGGCTCAGATTTAGGAA 57.216 34.615 0.00 0.00 0.00 3.36
5387 5642 8.964533 ATCTATAAGAAGGCTCAGATTTAGGA 57.035 34.615 0.00 0.00 0.00 2.94
5388 5643 9.651913 GAATCTATAAGAAGGCTCAGATTTAGG 57.348 37.037 0.00 0.00 33.93 2.69
5390 5645 9.159254 TGGAATCTATAAGAAGGCTCAGATTTA 57.841 33.333 0.00 0.00 33.93 1.40
5391 5646 8.038862 TGGAATCTATAAGAAGGCTCAGATTT 57.961 34.615 0.00 0.00 33.93 2.17
5392 5647 7.623999 TGGAATCTATAAGAAGGCTCAGATT 57.376 36.000 0.00 0.00 35.89 2.40
5393 5648 7.623999 TTGGAATCTATAAGAAGGCTCAGAT 57.376 36.000 0.00 0.00 0.00 2.90
5394 5649 7.623999 ATTGGAATCTATAAGAAGGCTCAGA 57.376 36.000 0.00 0.00 0.00 3.27
5395 5650 8.370940 TGTATTGGAATCTATAAGAAGGCTCAG 58.629 37.037 0.00 0.00 0.00 3.35
5396 5651 8.262601 TGTATTGGAATCTATAAGAAGGCTCA 57.737 34.615 0.00 0.00 0.00 4.26
5397 5652 8.589338 TCTGTATTGGAATCTATAAGAAGGCTC 58.411 37.037 0.00 0.00 0.00 4.70
5398 5653 8.371699 GTCTGTATTGGAATCTATAAGAAGGCT 58.628 37.037 0.00 0.00 0.00 4.58
5399 5654 8.371699 AGTCTGTATTGGAATCTATAAGAAGGC 58.628 37.037 0.00 0.00 0.00 4.35
5400 5655 9.703892 CAGTCTGTATTGGAATCTATAAGAAGG 57.296 37.037 0.00 0.00 0.00 3.46
5401 5656 9.202273 GCAGTCTGTATTGGAATCTATAAGAAG 57.798 37.037 0.93 0.00 0.00 2.85
5402 5657 8.704668 TGCAGTCTGTATTGGAATCTATAAGAA 58.295 33.333 0.93 0.00 0.00 2.52
5403 5658 8.250143 TGCAGTCTGTATTGGAATCTATAAGA 57.750 34.615 0.93 0.00 0.00 2.10
5404 5659 9.499479 AATGCAGTCTGTATTGGAATCTATAAG 57.501 33.333 14.56 0.00 31.51 1.73
5405 5660 9.494271 GAATGCAGTCTGTATTGGAATCTATAA 57.506 33.333 19.42 0.00 32.86 0.98
5406 5661 7.814587 CGAATGCAGTCTGTATTGGAATCTATA 59.185 37.037 19.42 0.00 32.86 1.31
5407 5662 6.648310 CGAATGCAGTCTGTATTGGAATCTAT 59.352 38.462 19.42 0.00 32.86 1.98
5408 5663 5.985530 CGAATGCAGTCTGTATTGGAATCTA 59.014 40.000 19.42 0.00 32.86 1.98
5409 5664 4.813161 CGAATGCAGTCTGTATTGGAATCT 59.187 41.667 19.42 0.00 32.86 2.40
5410 5665 4.024556 CCGAATGCAGTCTGTATTGGAATC 60.025 45.833 21.62 7.97 32.86 2.52
5411 5666 3.879295 CCGAATGCAGTCTGTATTGGAAT 59.121 43.478 21.62 0.27 32.86 3.01
5412 5667 3.055458 TCCGAATGCAGTCTGTATTGGAA 60.055 43.478 21.62 4.19 32.86 3.53
5413 5668 2.499693 TCCGAATGCAGTCTGTATTGGA 59.500 45.455 21.62 20.95 32.86 3.53
5414 5669 2.868583 CTCCGAATGCAGTCTGTATTGG 59.131 50.000 19.42 17.35 32.86 3.16
5415 5670 2.286294 GCTCCGAATGCAGTCTGTATTG 59.714 50.000 19.42 11.80 32.86 1.90
5416 5671 2.093500 TGCTCCGAATGCAGTCTGTATT 60.093 45.455 15.15 15.15 35.40 1.89
5417 5672 1.482182 TGCTCCGAATGCAGTCTGTAT 59.518 47.619 12.92 0.00 35.31 2.29
5418 5673 0.894835 TGCTCCGAATGCAGTCTGTA 59.105 50.000 12.92 0.00 35.31 2.74
5419 5674 0.035317 TTGCTCCGAATGCAGTCTGT 59.965 50.000 12.92 0.00 41.71 3.41
5420 5675 1.159285 TTTGCTCCGAATGCAGTCTG 58.841 50.000 12.92 5.86 41.71 3.51
5421 5676 1.896220 TTTTGCTCCGAATGCAGTCT 58.104 45.000 12.92 0.00 41.71 3.24
5422 5677 2.162208 TCATTTTGCTCCGAATGCAGTC 59.838 45.455 3.54 3.54 41.71 3.51
5423 5678 2.161855 TCATTTTGCTCCGAATGCAGT 58.838 42.857 0.00 0.00 41.71 4.40
5424 5679 2.163010 ACTCATTTTGCTCCGAATGCAG 59.837 45.455 0.00 0.00 41.71 4.41
5425 5680 2.095110 CACTCATTTTGCTCCGAATGCA 60.095 45.455 0.00 0.00 38.80 3.96
5426 5681 2.162208 TCACTCATTTTGCTCCGAATGC 59.838 45.455 0.00 0.00 34.15 3.56
5427 5682 4.424061 TTCACTCATTTTGCTCCGAATG 57.576 40.909 0.00 0.00 35.18 2.67
5428 5683 4.946157 AGATTCACTCATTTTGCTCCGAAT 59.054 37.500 0.00 0.00 0.00 3.34
5429 5684 4.326826 AGATTCACTCATTTTGCTCCGAA 58.673 39.130 0.00 0.00 0.00 4.30
5430 5685 3.942829 AGATTCACTCATTTTGCTCCGA 58.057 40.909 0.00 0.00 0.00 4.55
5431 5686 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
5432 5687 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
5433 5688 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
5459 5714 9.754382 ACAAACGGATGTATATAGACGTATTTT 57.246 29.630 0.00 0.00 33.85 1.82
5462 5717 9.224267 ACTACAAACGGATGTATATAGACGTAT 57.776 33.333 3.45 0.00 35.37 3.06
5463 5718 8.607441 ACTACAAACGGATGTATATAGACGTA 57.393 34.615 3.45 0.00 35.37 3.57
5464 5719 7.308229 GGACTACAAACGGATGTATATAGACGT 60.308 40.741 0.00 0.00 35.37 4.34
5465 5720 7.020010 GGACTACAAACGGATGTATATAGACG 58.980 42.308 3.45 0.00 35.37 4.18
5466 5721 7.879070 TGGACTACAAACGGATGTATATAGAC 58.121 38.462 3.45 0.00 35.37 2.59
5467 5722 8.645814 ATGGACTACAAACGGATGTATATAGA 57.354 34.615 3.45 0.00 35.37 1.98
5469 5724 9.524496 ACTATGGACTACAAACGGATGTATATA 57.476 33.333 3.45 0.00 35.37 0.86
5470 5725 8.418597 ACTATGGACTACAAACGGATGTATAT 57.581 34.615 3.45 0.00 35.37 0.86
5471 5726 7.828508 ACTATGGACTACAAACGGATGTATA 57.171 36.000 3.45 0.00 35.37 1.47
5472 5727 6.726490 ACTATGGACTACAAACGGATGTAT 57.274 37.500 3.45 0.00 35.37 2.29
5473 5728 7.643569 TTACTATGGACTACAAACGGATGTA 57.356 36.000 3.08 3.08 34.75 2.29
5474 5729 6.534475 TTACTATGGACTACAAACGGATGT 57.466 37.500 0.96 0.96 37.32 3.06
5475 5730 7.837202 TTTTACTATGGACTACAAACGGATG 57.163 36.000 0.00 0.00 0.00 3.51
5476 5731 8.483758 AGATTTTACTATGGACTACAAACGGAT 58.516 33.333 0.00 0.00 0.00 4.18
5477 5732 7.844009 AGATTTTACTATGGACTACAAACGGA 58.156 34.615 0.00 0.00 0.00 4.69
5478 5733 7.980099 AGAGATTTTACTATGGACTACAAACGG 59.020 37.037 0.00 0.00 0.00 4.44
5479 5734 8.928270 AGAGATTTTACTATGGACTACAAACG 57.072 34.615 0.00 0.00 0.00 3.60
5506 5761 9.025041 CCCTTCATTTCTAAATACAAGACCTTT 57.975 33.333 7.44 0.00 0.00 3.11
5507 5762 8.390921 TCCCTTCATTTCTAAATACAAGACCTT 58.609 33.333 7.44 0.00 0.00 3.50
5508 5763 7.928873 TCCCTTCATTTCTAAATACAAGACCT 58.071 34.615 7.44 0.00 0.00 3.85
5509 5764 7.829706 ACTCCCTTCATTTCTAAATACAAGACC 59.170 37.037 7.44 0.00 0.00 3.85
5510 5765 8.794335 ACTCCCTTCATTTCTAAATACAAGAC 57.206 34.615 7.44 0.00 0.00 3.01
5521 5776 9.620259 GTTTAGAATCATACTCCCTTCATTTCT 57.380 33.333 0.00 0.00 0.00 2.52
5522 5777 8.841300 GGTTTAGAATCATACTCCCTTCATTTC 58.159 37.037 0.00 0.00 0.00 2.17
5523 5778 7.780271 GGGTTTAGAATCATACTCCCTTCATTT 59.220 37.037 0.00 0.00 0.00 2.32
5524 5779 7.129504 AGGGTTTAGAATCATACTCCCTTCATT 59.870 37.037 0.00 0.00 40.79 2.57
5525 5780 6.621514 AGGGTTTAGAATCATACTCCCTTCAT 59.378 38.462 0.00 0.00 40.79 2.57
5526 5781 5.970640 AGGGTTTAGAATCATACTCCCTTCA 59.029 40.000 0.00 0.00 40.79 3.02
5527 5782 6.502074 AGGGTTTAGAATCATACTCCCTTC 57.498 41.667 0.00 0.00 40.79 3.46
5528 5783 7.371043 TCTAGGGTTTAGAATCATACTCCCTT 58.629 38.462 4.74 0.00 43.05 3.95
5529 5784 6.935036 TCTAGGGTTTAGAATCATACTCCCT 58.065 40.000 0.00 0.00 44.91 4.20
5530 5785 7.290481 AGTTCTAGGGTTTAGAATCATACTCCC 59.710 40.741 0.51 0.00 36.16 4.30
5531 5786 8.252624 AGTTCTAGGGTTTAGAATCATACTCC 57.747 38.462 0.51 0.00 36.16 3.85
5532 5787 9.752961 GAAGTTCTAGGGTTTAGAATCATACTC 57.247 37.037 0.00 0.00 36.16 2.59
5533 5788 8.414778 CGAAGTTCTAGGGTTTAGAATCATACT 58.585 37.037 0.56 0.00 36.16 2.12
5534 5789 8.411683 TCGAAGTTCTAGGGTTTAGAATCATAC 58.588 37.037 0.56 0.00 36.16 2.39
5535 5790 8.529424 TCGAAGTTCTAGGGTTTAGAATCATA 57.471 34.615 0.56 0.00 36.16 2.15
5554 5809 9.464714 GTGTTGTTCATGTATAGATATCGAAGT 57.535 33.333 0.00 0.00 0.00 3.01
5562 5818 8.704668 TGATACTGGTGTTGTTCATGTATAGAT 58.295 33.333 0.00 0.00 0.00 1.98
5591 5852 7.334421 AGAGAAGCTTGACGAAATTTTGCTATA 59.666 33.333 2.10 0.00 0.00 1.31
5592 5853 6.150140 AGAGAAGCTTGACGAAATTTTGCTAT 59.850 34.615 2.10 0.00 0.00 2.97
5626 5888 6.309494 CAGAATCATTGTGTTTTACATGCCTG 59.691 38.462 0.00 0.00 39.48 4.85
5695 5957 3.533487 AGGAAGGAAAGGGCCAATCTATT 59.467 43.478 6.18 3.00 0.00 1.73
5736 5998 0.032813 CCATTTGTGAGGGGCCATCT 60.033 55.000 20.14 0.00 0.00 2.90
5775 6037 0.326264 AATGCCAGTCTGACCTGACC 59.674 55.000 3.76 0.00 37.66 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.