Multiple sequence alignment - TraesCS5A01G272200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G272200 chr5A 100.000 5239 0 0 1 5239 481935178 481940416 0.000000e+00 9675.0
1 TraesCS5A01G272200 chr5B 92.926 2403 142 12 1852 4242 458051364 458053750 0.000000e+00 3470.0
2 TraesCS5A01G272200 chr5B 88.549 2419 174 54 210 2574 457931734 457929365 0.000000e+00 2837.0
3 TraesCS5A01G272200 chr5B 94.963 1211 59 2 2570 3779 457915139 457913930 0.000000e+00 1897.0
4 TraesCS5A01G272200 chr5B 93.834 1038 54 6 784 1811 458050314 458051351 0.000000e+00 1554.0
5 TraesCS5A01G272200 chr5B 91.909 927 58 10 4137 5057 457908529 457909444 0.000000e+00 1280.0
6 TraesCS5A01G272200 chr5B 89.834 541 36 8 210 740 458049710 458050241 0.000000e+00 676.0
7 TraesCS5A01G272200 chr5B 94.684 395 20 1 4582 4976 458055428 458055821 3.470000e-171 612.0
8 TraesCS5A01G272200 chr5B 90.278 360 23 8 4234 4587 458054966 458055319 1.330000e-125 460.0
9 TraesCS5A01G272200 chr5B 92.025 163 12 1 4137 4298 457908257 457908419 1.470000e-55 228.0
10 TraesCS5A01G272200 chr5B 84.146 164 14 5 4999 5157 459557631 459557787 1.180000e-31 148.0
11 TraesCS5A01G272200 chr5B 97.436 78 1 1 5075 5152 457909505 457909581 1.180000e-26 132.0
12 TraesCS5A01G272200 chr6A 78.831 1984 390 28 2154 4122 15655042 15653074 0.000000e+00 1310.0
13 TraesCS5A01G272200 chr6A 77.273 418 86 7 1376 1787 91881983 91881569 2.440000e-58 237.0
14 TraesCS5A01G272200 chr6A 78.543 247 30 10 4726 4954 15718701 15718460 1.970000e-29 141.0
15 TraesCS5A01G272200 chr6D 78.930 1870 337 50 2262 4115 14429570 14427742 0.000000e+00 1218.0
16 TraesCS5A01G272200 chr6D 81.674 1386 236 16 2191 3567 14934322 14935698 0.000000e+00 1136.0
17 TraesCS5A01G272200 chr6D 79.749 1511 266 29 2178 3675 14495974 14494491 0.000000e+00 1059.0
18 TraesCS5A01G272200 chr6D 80.256 1408 254 18 2275 3673 14901426 14902818 0.000000e+00 1038.0
19 TraesCS5A01G272200 chr6D 84.062 778 122 2 1007 1784 14497086 14496311 0.000000e+00 749.0
20 TraesCS5A01G272200 chr6D 81.369 789 136 7 1007 1787 14900539 14901324 2.660000e-177 632.0
21 TraesCS5A01G272200 chr6D 79.188 764 147 9 1022 1776 68630191 68630951 2.160000e-143 520.0
22 TraesCS5A01G272200 chr6D 79.592 245 30 7 4726 4954 14687356 14687596 1.950000e-34 158.0
23 TraesCS5A01G272200 chr6D 75.676 185 24 14 4061 4239 14494374 14494205 7.280000e-09 73.1
24 TraesCS5A01G272200 chr6B 82.167 1172 200 9 2262 3429 26487015 26485849 0.000000e+00 998.0
25 TraesCS5A01G272200 chr6B 81.282 780 143 3 1007 1785 26399244 26398467 3.440000e-176 628.0
26 TraesCS5A01G272200 chr6B 79.161 739 148 5 1022 1758 143660880 143661614 1.680000e-139 507.0
27 TraesCS5A01G272200 chr5D 81.891 751 134 2 2274 3023 27951300 27952049 2.660000e-177 632.0
28 TraesCS5A01G272200 chr5D 84.146 164 14 5 4999 5157 381629088 381629244 1.180000e-31 148.0
29 TraesCS5A01G272200 chr5D 82.927 164 16 5 4999 5157 381811820 381811976 2.540000e-28 137.0
30 TraesCS5A01G272200 chr5D 81.707 164 18 6 4999 5157 381779525 381779681 5.510000e-25 126.0
31 TraesCS5A01G272200 chr3A 79.194 769 152 5 1007 1773 690711171 690710409 1.290000e-145 527.0
32 TraesCS5A01G272200 chr3A 79.112 766 146 11 1007 1768 690712293 690711538 2.800000e-142 516.0
33 TraesCS5A01G272200 chr7B 94.595 74 2 2 5166 5239 450586557 450586486 4.290000e-21 113.0
34 TraesCS5A01G272200 chr7B 94.366 71 3 1 5169 5239 440325690 440325621 1.990000e-19 108.0
35 TraesCS5A01G272200 chr2B 93.333 75 4 1 5165 5239 193209300 193209373 5.550000e-20 110.0
36 TraesCS5A01G272200 chr2B 93.151 73 5 0 5167 5239 354073698 354073626 1.990000e-19 108.0
37 TraesCS5A01G272200 chrUn 94.366 71 3 1 5169 5239 403380523 403380592 1.990000e-19 108.0
38 TraesCS5A01G272200 chr7D 94.366 71 3 1 5169 5239 618983557 618983488 1.990000e-19 108.0
39 TraesCS5A01G272200 chr7D 92.000 75 4 2 5165 5239 602951474 602951546 2.580000e-18 104.0
40 TraesCS5A01G272200 chr7D 100.000 32 0 0 10 41 592618664 592618695 5.670000e-05 60.2
41 TraesCS5A01G272200 chr3D 94.366 71 3 1 5169 5239 603265284 603265215 1.990000e-19 108.0
42 TraesCS5A01G272200 chr4B 90.000 80 7 1 5160 5239 450316472 450316550 9.280000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G272200 chr5A 481935178 481940416 5238 False 9675.000000 9675 100.0000 1 5239 1 chr5A.!!$F1 5238
1 TraesCS5A01G272200 chr5B 457929365 457931734 2369 True 2837.000000 2837 88.5490 210 2574 1 chr5B.!!$R2 2364
2 TraesCS5A01G272200 chr5B 457913930 457915139 1209 True 1897.000000 1897 94.9630 2570 3779 1 chr5B.!!$R1 1209
3 TraesCS5A01G272200 chr5B 458049710 458055821 6111 False 1354.400000 3470 92.3112 210 4976 5 chr5B.!!$F3 4766
4 TraesCS5A01G272200 chr5B 457908257 457909581 1324 False 546.666667 1280 93.7900 4137 5152 3 chr5B.!!$F2 1015
5 TraesCS5A01G272200 chr6A 15653074 15655042 1968 True 1310.000000 1310 78.8310 2154 4122 1 chr6A.!!$R1 1968
6 TraesCS5A01G272200 chr6D 14427742 14429570 1828 True 1218.000000 1218 78.9300 2262 4115 1 chr6D.!!$R1 1853
7 TraesCS5A01G272200 chr6D 14934322 14935698 1376 False 1136.000000 1136 81.6740 2191 3567 1 chr6D.!!$F2 1376
8 TraesCS5A01G272200 chr6D 14900539 14902818 2279 False 835.000000 1038 80.8125 1007 3673 2 chr6D.!!$F4 2666
9 TraesCS5A01G272200 chr6D 14494205 14497086 2881 True 627.033333 1059 79.8290 1007 4239 3 chr6D.!!$R2 3232
10 TraesCS5A01G272200 chr6D 68630191 68630951 760 False 520.000000 520 79.1880 1022 1776 1 chr6D.!!$F3 754
11 TraesCS5A01G272200 chr6B 26485849 26487015 1166 True 998.000000 998 82.1670 2262 3429 1 chr6B.!!$R2 1167
12 TraesCS5A01G272200 chr6B 26398467 26399244 777 True 628.000000 628 81.2820 1007 1785 1 chr6B.!!$R1 778
13 TraesCS5A01G272200 chr6B 143660880 143661614 734 False 507.000000 507 79.1610 1022 1758 1 chr6B.!!$F1 736
14 TraesCS5A01G272200 chr5D 27951300 27952049 749 False 632.000000 632 81.8910 2274 3023 1 chr5D.!!$F1 749
15 TraesCS5A01G272200 chr3A 690710409 690712293 1884 True 521.500000 527 79.1530 1007 1773 2 chr3A.!!$R1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 498 0.027324 GGGTCATCGTCGTAGTCGTC 59.973 60.0 0.00 0.0 40.43 4.20 F
640 650 0.179051 CCATTCTCTCTGCCCTCTGC 60.179 60.0 0.00 0.0 41.77 4.26 F
781 826 0.250295 CCGCCACTTGAGTTCTGGAA 60.250 55.0 0.00 0.0 0.00 3.53 F
857 902 0.314302 CGTCCAGTTTCTCGACCAGT 59.686 55.0 0.00 0.0 0.00 4.00 F
1567 2748 0.616371 TATTGTGGGGTTCGGAGGTG 59.384 55.0 0.00 0.0 0.00 4.00 F
1924 3118 1.589803 AAGTGTGGTGGTTTCGCTAC 58.410 50.0 0.00 0.0 35.76 3.58 F
3551 4943 1.261238 AAGGCCTTAGCGAGCTGACT 61.261 55.0 18.87 0.0 41.24 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 2517 1.163554 GCAAGAACCTTGAGCTCCTG 58.836 55.000 12.15 3.56 0.00 3.86 R
2607 3992 1.282738 TGAAGATCCTGCTTCATGGCA 59.717 47.619 0.00 0.00 46.73 4.92 R
2648 4034 0.798776 ACTTCGCGCCAAGAGAATTG 59.201 50.000 21.91 1.14 37.98 2.32 R
2819 4207 3.546002 TTACAAACAAATCCTTCGGCG 57.454 42.857 0.00 0.00 0.00 6.46 R
3482 4870 0.676466 CCGAACAATGCAGGGTGCTA 60.676 55.000 0.00 0.00 45.31 3.49 R
3828 5220 0.032952 TTGTCACTCGGCAGGTACAC 59.967 55.000 0.00 0.00 0.00 2.90 R
4654 7395 0.098200 CAAGATCAGCCACATGCACG 59.902 55.000 0.00 0.00 44.83 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.618594 CACTGAATCAATACAGACCCACG 59.381 47.826 0.00 0.00 37.54 4.94
23 24 3.260884 ACTGAATCAATACAGACCCACGT 59.739 43.478 0.00 0.00 37.54 4.49
24 25 4.253685 CTGAATCAATACAGACCCACGTT 58.746 43.478 0.00 0.00 36.38 3.99
25 26 4.000325 TGAATCAATACAGACCCACGTTG 59.000 43.478 0.00 0.00 0.00 4.10
26 27 2.465860 TCAATACAGACCCACGTTGG 57.534 50.000 3.68 3.68 37.25 3.77
27 28 1.972075 TCAATACAGACCCACGTTGGA 59.028 47.619 13.50 0.00 40.96 3.53
28 29 2.569853 TCAATACAGACCCACGTTGGAT 59.430 45.455 13.50 0.00 40.96 3.41
29 30 2.677836 CAATACAGACCCACGTTGGATG 59.322 50.000 13.50 12.59 40.96 3.51
30 31 1.634960 TACAGACCCACGTTGGATGA 58.365 50.000 13.50 0.00 40.96 2.92
31 32 0.034896 ACAGACCCACGTTGGATGAC 59.965 55.000 13.50 1.25 40.96 3.06
32 33 0.034756 CAGACCCACGTTGGATGACA 59.965 55.000 13.50 0.00 40.96 3.58
33 34 0.034896 AGACCCACGTTGGATGACAC 59.965 55.000 13.50 0.00 40.96 3.67
34 35 0.250124 GACCCACGTTGGATGACACA 60.250 55.000 13.50 0.00 40.96 3.72
35 36 0.181587 ACCCACGTTGGATGACACAA 59.818 50.000 13.50 0.00 40.96 3.33
36 37 0.591170 CCCACGTTGGATGACACAAC 59.409 55.000 0.00 0.00 40.96 3.32
37 38 1.304254 CCACGTTGGATGACACAACA 58.696 50.000 8.73 0.00 46.41 3.33
38 39 1.002900 CCACGTTGGATGACACAACAC 60.003 52.381 8.73 0.00 46.41 3.32
39 40 0.934496 ACGTTGGATGACACAACACG 59.066 50.000 8.73 4.26 46.41 4.49
40 41 0.934496 CGTTGGATGACACAACACGT 59.066 50.000 8.73 0.00 46.41 4.49
41 42 1.070843 CGTTGGATGACACAACACGTC 60.071 52.381 8.73 0.00 46.41 4.34
42 43 1.937223 GTTGGATGACACAACACGTCA 59.063 47.619 3.65 0.00 46.77 4.35
43 44 1.864565 TGGATGACACAACACGTCAG 58.135 50.000 0.00 0.00 45.99 3.51
44 45 1.148310 GGATGACACAACACGTCAGG 58.852 55.000 0.00 0.00 45.99 3.86
45 46 1.270094 GGATGACACAACACGTCAGGA 60.270 52.381 0.00 0.00 45.99 3.86
46 47 1.792949 GATGACACAACACGTCAGGAC 59.207 52.381 0.00 0.00 45.99 3.85
47 48 0.533032 TGACACAACACGTCAGGACA 59.467 50.000 0.00 0.00 38.45 4.02
48 49 1.209128 GACACAACACGTCAGGACAG 58.791 55.000 0.00 0.00 33.43 3.51
49 50 0.810031 ACACAACACGTCAGGACAGC 60.810 55.000 0.00 0.00 0.00 4.40
50 51 1.227556 ACAACACGTCAGGACAGCC 60.228 57.895 0.00 0.00 0.00 4.85
51 52 1.961277 CAACACGTCAGGACAGCCC 60.961 63.158 0.00 0.00 33.31 5.19
52 53 3.515316 AACACGTCAGGACAGCCCG 62.515 63.158 0.00 0.00 40.87 6.13
53 54 4.742201 CACGTCAGGACAGCCCGG 62.742 72.222 0.00 0.00 40.87 5.73
55 56 4.436998 CGTCAGGACAGCCCGGTC 62.437 72.222 0.00 0.00 40.87 4.79
63 64 3.751246 CAGCCCGGTCCGAACGTA 61.751 66.667 14.39 0.00 0.00 3.57
64 65 2.757099 AGCCCGGTCCGAACGTAT 60.757 61.111 14.39 0.00 0.00 3.06
65 66 2.584143 GCCCGGTCCGAACGTATG 60.584 66.667 14.39 0.00 0.00 2.39
66 67 2.584143 CCCGGTCCGAACGTATGC 60.584 66.667 14.39 0.00 0.00 3.14
67 68 2.182284 CCGGTCCGAACGTATGCA 59.818 61.111 14.39 0.00 0.00 3.96
68 69 1.876714 CCGGTCCGAACGTATGCAG 60.877 63.158 14.39 0.00 0.00 4.41
69 70 1.138036 CGGTCCGAACGTATGCAGA 59.862 57.895 4.91 0.00 0.00 4.26
70 71 1.138047 CGGTCCGAACGTATGCAGAC 61.138 60.000 4.91 0.08 0.00 3.51
71 72 0.108992 GGTCCGAACGTATGCAGACA 60.109 55.000 12.67 0.00 0.00 3.41
72 73 1.269166 GTCCGAACGTATGCAGACAG 58.731 55.000 12.67 7.00 0.00 3.51
73 74 0.885879 TCCGAACGTATGCAGACAGT 59.114 50.000 12.67 7.65 0.00 3.55
74 75 1.271379 TCCGAACGTATGCAGACAGTT 59.729 47.619 17.28 17.28 0.00 3.16
75 76 2.066262 CCGAACGTATGCAGACAGTTT 58.934 47.619 17.97 6.45 0.00 2.66
76 77 3.057386 TCCGAACGTATGCAGACAGTTTA 60.057 43.478 17.97 8.45 0.00 2.01
77 78 3.676172 CCGAACGTATGCAGACAGTTTAA 59.324 43.478 17.97 0.00 0.00 1.52
78 79 4.201589 CCGAACGTATGCAGACAGTTTAAG 60.202 45.833 17.97 13.59 0.00 1.85
79 80 4.201589 CGAACGTATGCAGACAGTTTAAGG 60.202 45.833 17.97 8.50 0.00 2.69
80 81 4.530710 ACGTATGCAGACAGTTTAAGGA 57.469 40.909 12.67 0.00 0.00 3.36
81 82 4.243270 ACGTATGCAGACAGTTTAAGGAC 58.757 43.478 12.67 0.00 0.00 3.85
82 83 3.617263 CGTATGCAGACAGTTTAAGGACC 59.383 47.826 12.67 0.00 0.00 4.46
83 84 2.561478 TGCAGACAGTTTAAGGACCC 57.439 50.000 0.00 0.00 0.00 4.46
84 85 1.270625 TGCAGACAGTTTAAGGACCCG 60.271 52.381 0.00 0.00 0.00 5.28
85 86 1.270678 GCAGACAGTTTAAGGACCCGT 60.271 52.381 0.00 0.00 0.00 5.28
86 87 2.413837 CAGACAGTTTAAGGACCCGTG 58.586 52.381 0.00 0.00 0.00 4.94
87 88 2.044758 AGACAGTTTAAGGACCCGTGT 58.955 47.619 0.00 0.00 0.00 4.49
88 89 2.436911 AGACAGTTTAAGGACCCGTGTT 59.563 45.455 0.00 0.00 0.00 3.32
89 90 3.642848 AGACAGTTTAAGGACCCGTGTTA 59.357 43.478 0.00 0.00 0.00 2.41
90 91 4.101430 AGACAGTTTAAGGACCCGTGTTAA 59.899 41.667 0.00 0.00 0.00 2.01
91 92 4.779696 ACAGTTTAAGGACCCGTGTTAAA 58.220 39.130 0.00 0.00 0.00 1.52
92 93 4.818005 ACAGTTTAAGGACCCGTGTTAAAG 59.182 41.667 0.00 0.00 0.00 1.85
93 94 5.058490 CAGTTTAAGGACCCGTGTTAAAGA 58.942 41.667 0.00 0.00 0.00 2.52
94 95 5.704053 CAGTTTAAGGACCCGTGTTAAAGAT 59.296 40.000 0.00 0.00 0.00 2.40
95 96 5.704053 AGTTTAAGGACCCGTGTTAAAGATG 59.296 40.000 0.00 0.00 0.00 2.90
96 97 2.109425 AGGACCCGTGTTAAAGATGC 57.891 50.000 0.00 0.00 0.00 3.91
97 98 1.092348 GGACCCGTGTTAAAGATGCC 58.908 55.000 0.00 0.00 0.00 4.40
98 99 1.092348 GACCCGTGTTAAAGATGCCC 58.908 55.000 0.00 0.00 0.00 5.36
99 100 0.696501 ACCCGTGTTAAAGATGCCCT 59.303 50.000 0.00 0.00 0.00 5.19
100 101 1.074889 ACCCGTGTTAAAGATGCCCTT 59.925 47.619 0.00 0.00 36.47 3.95
101 102 2.306512 ACCCGTGTTAAAGATGCCCTTA 59.693 45.455 0.00 0.00 34.00 2.69
102 103 2.943033 CCCGTGTTAAAGATGCCCTTAG 59.057 50.000 0.00 0.00 34.00 2.18
103 104 3.606687 CCGTGTTAAAGATGCCCTTAGT 58.393 45.455 0.00 0.00 34.00 2.24
104 105 3.374058 CCGTGTTAAAGATGCCCTTAGTG 59.626 47.826 0.00 0.00 34.00 2.74
105 106 4.250464 CGTGTTAAAGATGCCCTTAGTGA 58.750 43.478 0.00 0.00 34.00 3.41
106 107 4.876107 CGTGTTAAAGATGCCCTTAGTGAT 59.124 41.667 0.00 0.00 34.00 3.06
107 108 5.354234 CGTGTTAAAGATGCCCTTAGTGATT 59.646 40.000 0.00 0.00 34.00 2.57
108 109 6.128007 CGTGTTAAAGATGCCCTTAGTGATTT 60.128 38.462 0.00 0.00 34.00 2.17
109 110 7.251281 GTGTTAAAGATGCCCTTAGTGATTTC 58.749 38.462 0.00 0.00 34.00 2.17
110 111 7.121315 GTGTTAAAGATGCCCTTAGTGATTTCT 59.879 37.037 0.00 0.00 34.00 2.52
111 112 7.336931 TGTTAAAGATGCCCTTAGTGATTTCTC 59.663 37.037 0.00 0.00 34.00 2.87
112 113 5.441718 AAGATGCCCTTAGTGATTTCTCA 57.558 39.130 0.00 0.00 32.24 3.27
113 114 5.033589 AGATGCCCTTAGTGATTTCTCAG 57.966 43.478 0.00 0.00 30.18 3.35
114 115 2.991250 TGCCCTTAGTGATTTCTCAGC 58.009 47.619 0.00 0.00 30.18 4.26
115 116 2.573462 TGCCCTTAGTGATTTCTCAGCT 59.427 45.455 0.00 0.00 30.18 4.24
116 117 3.202097 GCCCTTAGTGATTTCTCAGCTC 58.798 50.000 0.00 0.00 30.18 4.09
117 118 3.452474 CCCTTAGTGATTTCTCAGCTCG 58.548 50.000 0.00 0.00 30.18 5.03
118 119 2.863137 CCTTAGTGATTTCTCAGCTCGC 59.137 50.000 0.00 0.00 30.18 5.03
119 120 3.430098 CCTTAGTGATTTCTCAGCTCGCT 60.430 47.826 0.00 0.00 34.37 4.93
120 121 2.292103 AGTGATTTCTCAGCTCGCTC 57.708 50.000 0.00 0.00 30.18 5.03
121 122 1.547820 AGTGATTTCTCAGCTCGCTCA 59.452 47.619 0.00 0.00 30.18 4.26
122 123 2.028658 AGTGATTTCTCAGCTCGCTCAA 60.029 45.455 0.00 0.00 30.18 3.02
123 124 2.935201 GTGATTTCTCAGCTCGCTCAAT 59.065 45.455 0.00 0.00 30.18 2.57
124 125 2.934553 TGATTTCTCAGCTCGCTCAATG 59.065 45.455 0.00 0.00 0.00 2.82
125 126 2.462456 TTTCTCAGCTCGCTCAATGT 57.538 45.000 0.00 0.00 0.00 2.71
126 127 1.718396 TTCTCAGCTCGCTCAATGTG 58.282 50.000 0.00 0.00 0.00 3.21
127 128 0.890683 TCTCAGCTCGCTCAATGTGA 59.109 50.000 0.00 0.00 0.00 3.58
128 129 1.273327 TCTCAGCTCGCTCAATGTGAA 59.727 47.619 0.00 0.00 34.45 3.18
129 130 1.392853 CTCAGCTCGCTCAATGTGAAC 59.607 52.381 0.00 0.00 34.45 3.18
130 131 1.001293 TCAGCTCGCTCAATGTGAACT 59.999 47.619 0.00 0.00 34.45 3.01
131 132 1.802960 CAGCTCGCTCAATGTGAACTT 59.197 47.619 0.00 0.00 34.45 2.66
132 133 2.995939 CAGCTCGCTCAATGTGAACTTA 59.004 45.455 0.00 0.00 34.45 2.24
133 134 3.433274 CAGCTCGCTCAATGTGAACTTAA 59.567 43.478 0.00 0.00 34.45 1.85
134 135 3.681897 AGCTCGCTCAATGTGAACTTAAG 59.318 43.478 0.00 0.00 34.45 1.85
135 136 3.726190 GCTCGCTCAATGTGAACTTAAGC 60.726 47.826 1.29 0.00 34.45 3.09
136 137 3.664107 TCGCTCAATGTGAACTTAAGCT 58.336 40.909 1.29 0.00 31.45 3.74
137 138 4.065088 TCGCTCAATGTGAACTTAAGCTT 58.935 39.130 3.48 3.48 31.45 3.74
138 139 4.152402 TCGCTCAATGTGAACTTAAGCTTC 59.848 41.667 0.00 6.62 31.45 3.86
139 140 4.670221 CGCTCAATGTGAACTTAAGCTTCC 60.670 45.833 0.00 2.07 0.00 3.46
140 141 4.457257 GCTCAATGTGAACTTAAGCTTCCT 59.543 41.667 0.00 0.00 0.00 3.36
141 142 5.643777 GCTCAATGTGAACTTAAGCTTCCTA 59.356 40.000 0.00 0.00 0.00 2.94
142 143 6.183360 GCTCAATGTGAACTTAAGCTTCCTAG 60.183 42.308 0.00 1.63 0.00 3.02
143 144 6.769512 TCAATGTGAACTTAAGCTTCCTAGT 58.230 36.000 0.00 2.34 0.00 2.57
144 145 6.650807 TCAATGTGAACTTAAGCTTCCTAGTG 59.349 38.462 0.00 7.22 0.00 2.74
145 146 5.801531 TGTGAACTTAAGCTTCCTAGTGA 57.198 39.130 0.00 0.00 0.00 3.41
146 147 5.539048 TGTGAACTTAAGCTTCCTAGTGAC 58.461 41.667 0.00 6.93 0.00 3.67
147 148 4.930405 GTGAACTTAAGCTTCCTAGTGACC 59.070 45.833 0.00 0.48 0.00 4.02
148 149 4.591498 TGAACTTAAGCTTCCTAGTGACCA 59.409 41.667 0.00 2.89 0.00 4.02
149 150 4.810191 ACTTAAGCTTCCTAGTGACCAG 57.190 45.455 0.00 0.00 0.00 4.00
150 151 4.161102 ACTTAAGCTTCCTAGTGACCAGT 58.839 43.478 0.00 0.00 0.00 4.00
151 152 4.593634 ACTTAAGCTTCCTAGTGACCAGTT 59.406 41.667 0.00 0.00 0.00 3.16
152 153 5.071923 ACTTAAGCTTCCTAGTGACCAGTTT 59.928 40.000 0.00 0.00 0.00 2.66
153 154 6.269307 ACTTAAGCTTCCTAGTGACCAGTTTA 59.731 38.462 0.00 0.00 0.00 2.01
154 155 5.763876 AAGCTTCCTAGTGACCAGTTTAT 57.236 39.130 0.00 0.00 0.00 1.40
155 156 5.763876 AGCTTCCTAGTGACCAGTTTATT 57.236 39.130 0.00 0.00 0.00 1.40
156 157 6.869206 AGCTTCCTAGTGACCAGTTTATTA 57.131 37.500 0.00 0.00 0.00 0.98
157 158 6.879400 AGCTTCCTAGTGACCAGTTTATTAG 58.121 40.000 0.00 0.00 0.00 1.73
158 159 5.524281 GCTTCCTAGTGACCAGTTTATTAGC 59.476 44.000 0.00 0.00 0.00 3.09
159 160 6.630638 GCTTCCTAGTGACCAGTTTATTAGCT 60.631 42.308 0.00 0.00 0.00 3.32
160 161 7.417570 GCTTCCTAGTGACCAGTTTATTAGCTA 60.418 40.741 0.00 0.00 0.00 3.32
161 162 7.966339 TCCTAGTGACCAGTTTATTAGCTAA 57.034 36.000 8.99 8.99 0.00 3.09
162 163 8.548880 TCCTAGTGACCAGTTTATTAGCTAAT 57.451 34.615 22.09 22.09 0.00 1.73
163 164 8.989131 TCCTAGTGACCAGTTTATTAGCTAATT 58.011 33.333 23.47 4.30 0.00 1.40
164 165 9.046296 CCTAGTGACCAGTTTATTAGCTAATTG 57.954 37.037 23.47 15.09 0.00 2.32
165 166 9.601217 CTAGTGACCAGTTTATTAGCTAATTGT 57.399 33.333 23.47 11.42 0.00 2.71
166 167 8.494016 AGTGACCAGTTTATTAGCTAATTGTC 57.506 34.615 23.47 18.03 0.00 3.18
167 168 7.553044 AGTGACCAGTTTATTAGCTAATTGTCC 59.447 37.037 23.47 9.92 0.00 4.02
168 169 7.553044 GTGACCAGTTTATTAGCTAATTGTCCT 59.447 37.037 23.47 11.80 0.00 3.85
169 170 8.764558 TGACCAGTTTATTAGCTAATTGTCCTA 58.235 33.333 23.47 2.28 0.00 2.94
170 171 9.262358 GACCAGTTTATTAGCTAATTGTCCTAG 57.738 37.037 23.47 10.45 0.00 3.02
171 172 8.211629 ACCAGTTTATTAGCTAATTGTCCTAGG 58.788 37.037 23.47 17.47 0.00 3.02
172 173 8.429641 CCAGTTTATTAGCTAATTGTCCTAGGA 58.570 37.037 23.47 7.62 0.00 2.94
173 174 9.832445 CAGTTTATTAGCTAATTGTCCTAGGAA 57.168 33.333 23.47 6.38 0.00 3.36
176 177 8.848474 TTATTAGCTAATTGTCCTAGGAATGC 57.152 34.615 23.47 11.29 0.00 3.56
177 178 6.500589 TTAGCTAATTGTCCTAGGAATGCT 57.499 37.500 14.65 17.29 0.00 3.79
178 179 5.379706 AGCTAATTGTCCTAGGAATGCTT 57.620 39.130 14.65 7.63 0.00 3.91
179 180 5.760131 AGCTAATTGTCCTAGGAATGCTTT 58.240 37.500 14.65 6.04 0.00 3.51
180 181 6.190587 AGCTAATTGTCCTAGGAATGCTTTT 58.809 36.000 14.65 4.64 0.00 2.27
181 182 6.096001 AGCTAATTGTCCTAGGAATGCTTTTG 59.904 38.462 14.65 5.79 0.00 2.44
182 183 5.665916 AATTGTCCTAGGAATGCTTTTGG 57.334 39.130 14.65 0.00 0.00 3.28
183 184 3.806949 TGTCCTAGGAATGCTTTTGGT 57.193 42.857 14.65 0.00 0.00 3.67
184 185 4.112634 TGTCCTAGGAATGCTTTTGGTT 57.887 40.909 14.65 0.00 0.00 3.67
185 186 4.479158 TGTCCTAGGAATGCTTTTGGTTT 58.521 39.130 14.65 0.00 0.00 3.27
186 187 4.280677 TGTCCTAGGAATGCTTTTGGTTTG 59.719 41.667 14.65 0.00 0.00 2.93
187 188 4.522789 GTCCTAGGAATGCTTTTGGTTTGA 59.477 41.667 14.65 0.00 0.00 2.69
188 189 5.010617 GTCCTAGGAATGCTTTTGGTTTGAA 59.989 40.000 14.65 0.00 0.00 2.69
189 190 5.010617 TCCTAGGAATGCTTTTGGTTTGAAC 59.989 40.000 9.71 0.00 0.00 3.18
190 191 4.751767 AGGAATGCTTTTGGTTTGAACA 57.248 36.364 0.00 0.00 0.00 3.18
191 192 5.096443 AGGAATGCTTTTGGTTTGAACAA 57.904 34.783 0.00 0.00 0.00 2.83
192 193 5.495640 AGGAATGCTTTTGGTTTGAACAAA 58.504 33.333 0.00 0.00 36.15 2.83
193 194 5.942826 AGGAATGCTTTTGGTTTGAACAAAA 59.057 32.000 4.09 4.09 43.30 2.44
200 201 5.659440 TTTGGTTTGAACAAAAGCTCTCT 57.341 34.783 1.47 0.00 44.83 3.10
201 202 4.637483 TGGTTTGAACAAAAGCTCTCTG 57.363 40.909 1.47 0.00 44.83 3.35
202 203 4.269183 TGGTTTGAACAAAAGCTCTCTGA 58.731 39.130 1.47 0.00 44.83 3.27
203 204 4.704540 TGGTTTGAACAAAAGCTCTCTGAA 59.295 37.500 1.47 0.00 44.83 3.02
204 205 5.360714 TGGTTTGAACAAAAGCTCTCTGAAT 59.639 36.000 1.47 0.00 44.83 2.57
205 206 6.127366 TGGTTTGAACAAAAGCTCTCTGAATT 60.127 34.615 1.47 0.00 44.83 2.17
206 207 6.199719 GGTTTGAACAAAAGCTCTCTGAATTG 59.800 38.462 1.47 0.00 41.96 2.32
207 208 4.863491 TGAACAAAAGCTCTCTGAATTGC 58.137 39.130 0.00 0.00 0.00 3.56
208 209 3.930634 ACAAAAGCTCTCTGAATTGCC 57.069 42.857 0.00 0.00 0.00 4.52
254 255 0.945813 CTACGTAAGCCCTCTCCTCG 59.054 60.000 0.00 0.00 45.62 4.63
256 257 2.415608 CGTAAGCCCTCTCCTCGCA 61.416 63.158 0.00 0.00 0.00 5.10
265 266 1.674441 CCTCTCCTCGCATAACACGTA 59.326 52.381 0.00 0.00 0.00 3.57
266 267 2.287069 CCTCTCCTCGCATAACACGTAG 60.287 54.545 0.00 0.00 0.00 3.51
267 268 1.674441 TCTCCTCGCATAACACGTAGG 59.326 52.381 0.00 0.00 32.57 3.18
327 328 4.244862 GCGTCAATCCACCATTTTCAAAT 58.755 39.130 0.00 0.00 0.00 2.32
341 342 4.981389 TTTCAAATTTGCCAACGCATAC 57.019 36.364 13.54 0.00 46.67 2.39
369 378 2.453843 CTCTGGAAGCACTTCAGCG 58.546 57.895 12.21 0.62 41.20 5.18
384 393 2.818274 GCGAAGGGGTAGGCAACG 60.818 66.667 0.00 0.00 46.39 4.10
387 396 0.179119 CGAAGGGGTAGGCAACGTAG 60.179 60.000 0.00 0.00 46.39 3.51
391 400 2.314246 AGGGGTAGGCAACGTAGTATC 58.686 52.381 0.00 0.00 45.00 2.24
392 401 2.034124 GGGGTAGGCAACGTAGTATCA 58.966 52.381 0.00 0.00 45.00 2.15
393 402 2.223900 GGGGTAGGCAACGTAGTATCAC 60.224 54.545 0.00 0.00 45.00 3.06
394 403 2.692041 GGGTAGGCAACGTAGTATCACT 59.308 50.000 0.00 0.00 45.00 3.41
395 404 3.131755 GGGTAGGCAACGTAGTATCACTT 59.868 47.826 0.00 0.00 45.00 3.16
396 405 4.382362 GGGTAGGCAACGTAGTATCACTTT 60.382 45.833 0.00 0.00 45.00 2.66
397 406 4.802563 GGTAGGCAACGTAGTATCACTTTC 59.197 45.833 0.00 0.00 45.00 2.62
399 408 3.192001 AGGCAACGTAGTATCACTTTCGA 59.808 43.478 0.00 0.00 45.00 3.71
400 409 3.302699 GGCAACGTAGTATCACTTTCGAC 59.697 47.826 0.00 0.00 45.00 4.20
401 410 3.002344 GCAACGTAGTATCACTTTCGACG 60.002 47.826 0.00 0.00 45.00 5.12
403 412 3.996032 ACGTAGTATCACTTTCGACGAC 58.004 45.455 0.00 0.00 41.94 4.34
405 414 4.201666 ACGTAGTATCACTTTCGACGACTC 60.202 45.833 0.00 0.00 41.94 3.36
406 415 4.201656 CGTAGTATCACTTTCGACGACTCA 60.202 45.833 0.00 0.00 33.51 3.41
407 416 4.761235 AGTATCACTTTCGACGACTCAA 57.239 40.909 0.00 0.00 0.00 3.02
408 417 5.117355 AGTATCACTTTCGACGACTCAAA 57.883 39.130 0.00 0.00 0.00 2.69
417 426 6.687105 ACTTTCGACGACTCAAATTTTTCTTG 59.313 34.615 0.00 0.00 0.00 3.02
425 434 7.492344 ACGACTCAAATTTTTCTTGCTTCATTT 59.508 29.630 0.00 0.00 0.00 2.32
464 473 0.470766 TGTGGGTTGTCGCCTTTACT 59.529 50.000 0.00 0.00 0.00 2.24
475 484 0.822164 GCCTTTACTAGCTCGGGTCA 59.178 55.000 0.00 0.00 0.00 4.02
483 492 0.179076 TAGCTCGGGTCATCGTCGTA 60.179 55.000 0.00 0.00 0.00 3.43
489 498 0.027324 GGGTCATCGTCGTAGTCGTC 59.973 60.000 0.00 0.00 40.43 4.20
513 522 1.451747 GCCTACCCGTCGAGACTCT 60.452 63.158 0.03 0.00 0.00 3.24
526 535 2.025155 GAGACTCTTCGCTCCACCATA 58.975 52.381 0.00 0.00 0.00 2.74
537 546 0.396556 TCCACCATACGAGCTGCCTA 60.397 55.000 0.00 0.00 0.00 3.93
568 577 3.462021 GTTATCATGGCCACTCTCAGAC 58.538 50.000 8.16 0.00 0.00 3.51
569 578 0.463204 ATCATGGCCACTCTCAGACG 59.537 55.000 8.16 0.00 0.00 4.18
578 588 3.633235 CCACTCTCAGACGAAATATCCG 58.367 50.000 0.00 0.00 0.00 4.18
592 602 1.107538 TATCCGCTTCTCCCGTCCTG 61.108 60.000 0.00 0.00 0.00 3.86
594 604 3.068691 CGCTTCTCCCGTCCTGGA 61.069 66.667 0.00 0.00 42.00 3.86
633 643 1.522580 GCCGTCCCATTCTCTCTGC 60.523 63.158 0.00 0.00 0.00 4.26
634 644 1.144936 CCGTCCCATTCTCTCTGCC 59.855 63.158 0.00 0.00 0.00 4.85
640 650 0.179051 CCATTCTCTCTGCCCTCTGC 60.179 60.000 0.00 0.00 41.77 4.26
663 673 2.010582 GCTGATCGGCTTCTCTCCGT 62.011 60.000 19.63 0.00 46.49 4.69
704 714 1.643811 AGCAACTCTCCCCTCTCTACT 59.356 52.381 0.00 0.00 0.00 2.57
723 735 0.616111 TGAGCCTTCTCCACCCTCTC 60.616 60.000 0.00 0.00 38.58 3.20
768 813 4.097361 GTCCTCCTTCCCCGCCAC 62.097 72.222 0.00 0.00 0.00 5.01
769 814 4.332543 TCCTCCTTCCCCGCCACT 62.333 66.667 0.00 0.00 0.00 4.00
770 815 3.330720 CCTCCTTCCCCGCCACTT 61.331 66.667 0.00 0.00 0.00 3.16
771 816 2.045926 CTCCTTCCCCGCCACTTG 60.046 66.667 0.00 0.00 0.00 3.16
772 817 2.528127 TCCTTCCCCGCCACTTGA 60.528 61.111 0.00 0.00 0.00 3.02
773 818 2.045926 CCTTCCCCGCCACTTGAG 60.046 66.667 0.00 0.00 0.00 3.02
774 819 2.750350 CTTCCCCGCCACTTGAGT 59.250 61.111 0.00 0.00 0.00 3.41
775 820 1.073199 CTTCCCCGCCACTTGAGTT 59.927 57.895 0.00 0.00 0.00 3.01
776 821 0.955919 CTTCCCCGCCACTTGAGTTC 60.956 60.000 0.00 0.00 0.00 3.01
777 822 1.415672 TTCCCCGCCACTTGAGTTCT 61.416 55.000 0.00 0.00 0.00 3.01
779 824 1.672356 CCCGCCACTTGAGTTCTGG 60.672 63.158 0.00 0.00 0.00 3.86
780 825 1.371183 CCGCCACTTGAGTTCTGGA 59.629 57.895 0.00 0.00 0.00 3.86
781 826 0.250295 CCGCCACTTGAGTTCTGGAA 60.250 55.000 0.00 0.00 0.00 3.53
782 827 1.611673 CCGCCACTTGAGTTCTGGAAT 60.612 52.381 0.00 0.00 0.00 3.01
807 852 1.220477 GCTCTGGAAGGCAGTCTCC 59.780 63.158 0.00 0.00 31.60 3.71
854 899 1.737008 GGCGTCCAGTTTCTCGACC 60.737 63.158 0.00 0.00 0.00 4.79
857 902 0.314302 CGTCCAGTTTCTCGACCAGT 59.686 55.000 0.00 0.00 0.00 4.00
910 955 1.388547 CCTCTCTCTCTCTGGTTCCG 58.611 60.000 0.00 0.00 0.00 4.30
943 996 2.100631 CGATTTGCCTCCGCGTCTT 61.101 57.895 4.92 0.00 38.08 3.01
950 1003 2.342279 CTCCGCGTCTTGGTTGGA 59.658 61.111 4.92 0.00 0.00 3.53
951 1004 1.738099 CTCCGCGTCTTGGTTGGAG 60.738 63.158 4.92 0.00 40.19 3.86
963 1016 1.322442 GGTTGGAGTTGCTTGCTCTT 58.678 50.000 0.00 0.00 33.73 2.85
969 1022 3.008375 TGGAGTTGCTTGCTCTTACTCAT 59.992 43.478 0.00 0.00 37.54 2.90
978 1031 5.352569 GCTTGCTCTTACTCATAAAAGCAGA 59.647 40.000 0.00 0.00 40.48 4.26
1336 2517 5.646606 GTCATAAGATAGCGAAGAGGATCC 58.353 45.833 2.48 2.48 33.66 3.36
1458 2639 1.335964 CGGATGTCGGCGATCTACAAT 60.336 52.381 14.79 0.19 34.75 2.71
1488 2669 2.770447 TGCCTGGTAGGTATTGATGGA 58.230 47.619 0.00 0.00 37.80 3.41
1567 2748 0.616371 TATTGTGGGGTTCGGAGGTG 59.384 55.000 0.00 0.00 0.00 4.00
1613 2794 6.114187 ACAAGTGTACAATGAGATTGGAGA 57.886 37.500 14.89 0.00 44.42 3.71
1619 2800 6.763135 GTGTACAATGAGATTGGAGAGCAATA 59.237 38.462 0.00 0.00 44.42 1.90
1789 2978 9.660180 AACATAAAAGGTATCTGTTCTTCTCTC 57.340 33.333 0.00 0.00 0.00 3.20
1795 2984 6.597562 AGGTATCTGTTCTTCTCTCGATAGT 58.402 40.000 0.00 0.00 37.40 2.12
1799 2988 5.944013 TCTGTTCTTCTCTCGATAGTTGTG 58.056 41.667 0.00 0.00 37.40 3.33
1834 3023 9.724839 CGAAAGGTTATCTAAAAGTTTTTGTCA 57.275 29.630 6.10 0.00 0.00 3.58
1837 3026 9.476202 AAGGTTATCTAAAAGTTTTTGTCATGC 57.524 29.630 6.10 0.00 0.00 4.06
1838 3027 8.860088 AGGTTATCTAAAAGTTTTTGTCATGCT 58.140 29.630 6.10 0.00 0.00 3.79
1839 3028 9.476202 GGTTATCTAAAAGTTTTTGTCATGCTT 57.524 29.630 6.10 0.00 0.00 3.91
1844 3033 9.515020 TCTAAAAGTTTTTGTCATGCTTTAGTG 57.485 29.630 6.10 0.00 0.00 2.74
1845 3034 9.301153 CTAAAAGTTTTTGTCATGCTTTAGTGT 57.699 29.630 6.10 0.00 0.00 3.55
1846 3035 7.524294 AAAGTTTTTGTCATGCTTTAGTGTG 57.476 32.000 0.00 0.00 0.00 3.82
1850 3039 7.700656 AGTTTTTGTCATGCTTTAGTGTGTAAC 59.299 33.333 0.00 0.00 37.35 2.50
1867 3056 6.901357 GTGTGTAACTTTAAACAGTTGTACCG 59.099 38.462 3.29 0.00 37.57 4.02
1871 3060 5.352643 ACTTTAAACAGTTGTACCGATGC 57.647 39.130 0.00 0.00 0.00 3.91
1897 3086 8.197988 GTCATGACGAAGATATTTTGTTAGGT 57.802 34.615 10.69 0.00 0.00 3.08
1913 3107 2.071778 AGGTCAATGCAAAGTGTGGT 57.928 45.000 0.00 0.00 0.00 4.16
1918 3112 2.499289 TCAATGCAAAGTGTGGTGGTTT 59.501 40.909 0.00 0.00 0.00 3.27
1919 3113 2.865551 CAATGCAAAGTGTGGTGGTTTC 59.134 45.455 0.00 0.00 0.00 2.78
1924 3118 1.589803 AAGTGTGGTGGTTTCGCTAC 58.410 50.000 0.00 0.00 35.76 3.58
2057 3251 6.173427 TCTATGTGGCAAGCATATAAGTCA 57.827 37.500 0.00 0.00 0.00 3.41
2091 3285 7.846066 TGGGACAACAAAATTAGGGAATTATG 58.154 34.615 0.00 0.00 31.44 1.90
2092 3286 7.093112 TGGGACAACAAAATTAGGGAATTATGG 60.093 37.037 0.00 0.00 31.44 2.74
2093 3287 7.125053 GGGACAACAAAATTAGGGAATTATGGA 59.875 37.037 0.00 0.00 34.01 3.41
2095 3289 8.429237 ACAACAAAATTAGGGAATTATGGACA 57.571 30.769 0.00 0.00 34.01 4.02
2096 3290 9.045745 ACAACAAAATTAGGGAATTATGGACAT 57.954 29.630 0.00 0.00 34.01 3.06
2102 3296 9.588096 AAATTAGGGAATTATGGACATAGAACC 57.412 33.333 0.00 0.00 34.01 3.62
2103 3297 5.584551 AGGGAATTATGGACATAGAACCC 57.415 43.478 15.41 15.41 34.18 4.11
2108 3302 4.689612 TTATGGACATAGAACCCTGAGC 57.310 45.455 0.00 0.00 0.00 4.26
2121 3315 3.849527 ACCCTGAGCTTTCCTTTCATTT 58.150 40.909 0.00 0.00 0.00 2.32
2150 3344 8.099364 ACTTTGCCATATTTCTATATGTTCCG 57.901 34.615 0.00 0.00 41.29 4.30
2302 3687 5.576774 GCAACAGGTACTTCATTTTATTGGC 59.423 40.000 0.00 0.00 34.60 4.52
2388 3773 8.319057 TGGAAGTAGAGTAATGATAACCACAT 57.681 34.615 0.00 0.00 0.00 3.21
2397 3782 9.725019 GAGTAATGATAACCACATGATTGGATA 57.275 33.333 9.25 2.43 39.24 2.59
2514 3899 5.643777 AGAGTATTTGGGTCTGAAAATGTCG 59.356 40.000 0.00 0.00 0.00 4.35
2648 4034 4.943705 TCAAATGAGTGGGAGAGCATAAAC 59.056 41.667 0.00 0.00 0.00 2.01
2683 4069 2.482839 CGAAGTTTGCCACAAAACCCAT 60.483 45.455 0.00 0.00 40.26 4.00
2684 4070 3.243569 CGAAGTTTGCCACAAAACCCATA 60.244 43.478 0.00 0.00 40.26 2.74
2699 4085 6.581388 AAACCCATATTGGAAGAGATGAGA 57.419 37.500 0.00 0.00 40.96 3.27
2819 4207 4.386867 TGACCTAGTTCGACAATGGATC 57.613 45.455 0.00 0.00 0.00 3.36
2918 4306 2.109774 AGAGGTCTGATTCAGCCTGAG 58.890 52.381 24.98 0.00 37.83 3.35
2933 4321 3.054139 AGCCTGAGAAAACATGCTATGGA 60.054 43.478 0.00 0.00 39.26 3.41
3230 4618 5.276207 GCTTGCTTTTGAGTTTCCGTTTAAC 60.276 40.000 0.00 0.00 0.00 2.01
3300 4688 5.966742 AAGGTATTTGAAGGTTTCAGCTC 57.033 39.130 0.00 0.00 41.38 4.09
3482 4870 4.952335 GGGATCCAGAACATGAAATCAGTT 59.048 41.667 15.23 0.00 0.00 3.16
3483 4871 6.069440 AGGGATCCAGAACATGAAATCAGTTA 60.069 38.462 15.23 0.00 0.00 2.24
3521 4912 2.167487 GGACATGTCAGAGAGTTCCCTC 59.833 54.545 26.47 1.34 38.04 4.30
3522 4913 2.828520 GACATGTCAGAGAGTTCCCTCA 59.171 50.000 21.07 0.00 40.40 3.86
3551 4943 1.261238 AAGGCCTTAGCGAGCTGACT 61.261 55.000 18.87 0.00 41.24 3.41
3648 5040 2.026356 TCCTCCATTGGAATGCTTCGAA 60.026 45.455 6.88 0.00 35.08 3.71
3828 5220 0.028770 GATCCTCTCTCTGCGTGTCG 59.971 60.000 0.00 0.00 0.00 4.35
3858 5250 1.257936 CGAGTGACAAGGTTCGTGTTG 59.742 52.381 0.00 0.00 0.00 3.33
3914 5306 2.697761 CGTGTCGGACGTCTCCCAT 61.698 63.158 16.46 0.00 43.50 4.00
3929 5321 0.695924 CCCATGACAAGGTGGTGGTA 59.304 55.000 0.00 0.00 33.55 3.25
3930 5322 1.074727 CCCATGACAAGGTGGTGGTAA 59.925 52.381 0.00 0.00 33.55 2.85
3944 5336 0.106619 TGGTAAGCACGGGGTTGTTT 60.107 50.000 13.39 0.00 35.99 2.83
3997 5389 1.359459 GAAGATGTCACCGCGAACCC 61.359 60.000 8.23 0.00 0.00 4.11
4181 5579 8.631480 AACATATACACGATACTATGGAGTCA 57.369 34.615 0.00 0.00 37.10 3.41
4258 6880 1.332686 GATTTATCCCGTTGAACCGCC 59.667 52.381 0.00 0.00 0.00 6.13
4284 6906 7.685481 TCTCATCTGTAACTTAACCAATTCCA 58.315 34.615 0.00 0.00 0.00 3.53
4287 6909 7.888021 TCATCTGTAACTTAACCAATTCCATGT 59.112 33.333 0.00 0.00 0.00 3.21
4290 6912 7.888021 TCTGTAACTTAACCAATTCCATGTCAT 59.112 33.333 0.00 0.00 0.00 3.06
4293 6915 9.139174 GTAACTTAACCAATTCCATGTCATTTG 57.861 33.333 0.00 0.00 0.00 2.32
4294 6916 7.537596 ACTTAACCAATTCCATGTCATTTGA 57.462 32.000 0.00 0.00 0.00 2.69
4295 6917 8.137745 ACTTAACCAATTCCATGTCATTTGAT 57.862 30.769 0.00 0.00 0.00 2.57
4296 6918 8.036575 ACTTAACCAATTCCATGTCATTTGATG 58.963 33.333 0.00 0.00 0.00 3.07
4297 6919 6.363167 AACCAATTCCATGTCATTTGATGT 57.637 33.333 0.00 0.00 0.00 3.06
4298 6920 5.726397 ACCAATTCCATGTCATTTGATGTG 58.274 37.500 0.00 0.00 0.00 3.21
4299 6921 5.246656 ACCAATTCCATGTCATTTGATGTGT 59.753 36.000 0.00 0.00 0.00 3.72
4359 6986 6.607004 TTTCTTGAGTTTTGTAAACCCCAA 57.393 33.333 0.00 0.00 0.00 4.12
4360 6987 5.845391 TCTTGAGTTTTGTAAACCCCAAG 57.155 39.130 18.64 18.64 35.01 3.61
4448 7075 6.019779 TGGAAATGTTTCGTCCCATAAAAG 57.980 37.500 0.00 0.00 38.06 2.27
4473 7100 7.557719 AGGAAAATTTTGTTGTGAAGAGAGAGA 59.442 33.333 8.47 0.00 0.00 3.10
4474 7101 8.190784 GGAAAATTTTGTTGTGAAGAGAGAGAA 58.809 33.333 8.47 0.00 0.00 2.87
4539 7166 9.912634 TTTGAGTTCAATCTTTTATTAAGCCAG 57.087 29.630 0.00 0.00 35.55 4.85
4540 7167 8.862325 TGAGTTCAATCTTTTATTAAGCCAGA 57.138 30.769 0.00 0.00 0.00 3.86
4564 7191 3.927481 GAAGCTGGGTGTGCCTCCC 62.927 68.421 0.00 5.62 44.81 4.30
4604 7345 6.946009 AGGTACTAGGTTGTAAACAATGCAAT 59.054 34.615 0.00 0.00 44.85 3.56
4663 7404 1.536766 AGTCAAATGACCGTGCATGTG 59.463 47.619 9.84 0.00 45.85 3.21
4865 7606 2.298610 GCTTTAGTCCATAGGTTGCCC 58.701 52.381 0.00 0.00 0.00 5.36
4985 7726 6.389906 GGAGATCAGTTAAAAATTGTGGGTG 58.610 40.000 0.00 0.00 0.00 4.61
5013 7754 4.556233 TCATCGGTAATCTTCTTATGGCG 58.444 43.478 0.00 0.00 0.00 5.69
5021 7762 7.117812 CGGTAATCTTCTTATGGCGAATTATGT 59.882 37.037 0.00 0.00 0.00 2.29
5027 7768 6.117911 TCTTATGGCGAATTATGTGTTGTG 57.882 37.500 0.00 0.00 0.00 3.33
5052 7793 4.756642 TGTACTGAAACAATGGAAGCTCTG 59.243 41.667 0.00 0.00 0.00 3.35
5057 7798 3.515602 AACAATGGAAGCTCTGAACCT 57.484 42.857 0.00 0.00 0.00 3.50
5058 7799 2.787994 ACAATGGAAGCTCTGAACCTG 58.212 47.619 0.00 0.00 0.00 4.00
5059 7800 1.471684 CAATGGAAGCTCTGAACCTGC 59.528 52.381 0.00 0.00 0.00 4.85
5061 7802 1.644509 TGGAAGCTCTGAACCTGCTA 58.355 50.000 0.00 0.00 35.85 3.49
5062 7803 2.191400 TGGAAGCTCTGAACCTGCTAT 58.809 47.619 0.00 0.00 35.85 2.97
5063 7804 3.374764 TGGAAGCTCTGAACCTGCTATA 58.625 45.455 0.00 0.00 35.85 1.31
5064 7805 3.133003 TGGAAGCTCTGAACCTGCTATAC 59.867 47.826 0.00 0.00 35.85 1.47
5065 7806 3.386402 GGAAGCTCTGAACCTGCTATACT 59.614 47.826 0.00 0.00 35.85 2.12
5066 7807 4.367450 GAAGCTCTGAACCTGCTATACTG 58.633 47.826 0.00 0.00 35.85 2.74
5067 7808 2.102252 AGCTCTGAACCTGCTATACTGC 59.898 50.000 0.00 0.00 35.05 4.40
5068 7809 2.159043 GCTCTGAACCTGCTATACTGCA 60.159 50.000 0.00 0.00 41.05 4.41
5069 7810 3.452474 CTCTGAACCTGCTATACTGCAC 58.548 50.000 0.00 0.00 38.12 4.57
5072 7813 2.301583 TGAACCTGCTATACTGCACACA 59.698 45.455 0.00 0.00 38.12 3.72
5073 7814 3.055167 TGAACCTGCTATACTGCACACAT 60.055 43.478 0.00 0.00 38.12 3.21
5114 7898 5.287226 CGACCTGTACTCTTACACTGTTTT 58.713 41.667 0.00 0.00 34.36 2.43
5136 7920 5.443185 TTTCTGAAAGTTCTGATGCCAAG 57.557 39.130 0.00 0.00 35.51 3.61
5152 7936 1.808945 CCAAGACACTGGTTGATCTGC 59.191 52.381 0.00 0.00 0.00 4.26
5153 7937 2.551721 CCAAGACACTGGTTGATCTGCT 60.552 50.000 0.00 0.00 0.00 4.24
5154 7938 2.469274 AGACACTGGTTGATCTGCTG 57.531 50.000 0.00 0.00 0.00 4.41
5155 7939 1.696336 AGACACTGGTTGATCTGCTGT 59.304 47.619 0.00 0.00 0.00 4.40
5156 7940 2.899900 AGACACTGGTTGATCTGCTGTA 59.100 45.455 0.00 0.00 0.00 2.74
5157 7941 3.517100 AGACACTGGTTGATCTGCTGTAT 59.483 43.478 0.00 0.00 0.00 2.29
5158 7942 4.019860 AGACACTGGTTGATCTGCTGTATT 60.020 41.667 0.00 0.00 0.00 1.89
5159 7943 5.187772 AGACACTGGTTGATCTGCTGTATTA 59.812 40.000 0.00 0.00 0.00 0.98
5160 7944 5.804639 ACACTGGTTGATCTGCTGTATTAA 58.195 37.500 0.00 0.00 0.00 1.40
5161 7945 5.877012 ACACTGGTTGATCTGCTGTATTAAG 59.123 40.000 0.00 0.00 0.00 1.85
5162 7946 4.878397 ACTGGTTGATCTGCTGTATTAAGC 59.122 41.667 0.00 0.00 43.82 3.09
5163 7947 5.102953 TGGTTGATCTGCTGTATTAAGCT 57.897 39.130 0.00 0.00 43.90 3.74
5164 7948 6.127054 ACTGGTTGATCTGCTGTATTAAGCTA 60.127 38.462 0.00 0.00 43.90 3.32
5165 7949 6.830912 TGGTTGATCTGCTGTATTAAGCTAT 58.169 36.000 0.00 0.00 43.90 2.97
5166 7950 7.962441 TGGTTGATCTGCTGTATTAAGCTATA 58.038 34.615 0.00 0.00 43.90 1.31
5167 7951 8.597167 TGGTTGATCTGCTGTATTAAGCTATAT 58.403 33.333 0.00 0.00 43.90 0.86
5182 7966 8.558973 TTAAGCTATATACTACTTCCTCCGTC 57.441 38.462 0.00 0.00 0.00 4.79
5183 7967 5.499313 AGCTATATACTACTTCCTCCGTCC 58.501 45.833 0.00 0.00 0.00 4.79
5184 7968 4.639755 GCTATATACTACTTCCTCCGTCCC 59.360 50.000 0.00 0.00 0.00 4.46
5185 7969 4.736611 ATATACTACTTCCTCCGTCCCA 57.263 45.455 0.00 0.00 0.00 4.37
5186 7970 3.614568 ATACTACTTCCTCCGTCCCAT 57.385 47.619 0.00 0.00 0.00 4.00
5187 7971 4.736611 ATACTACTTCCTCCGTCCCATA 57.263 45.455 0.00 0.00 0.00 2.74
5188 7972 3.393426 ACTACTTCCTCCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
5189 7973 3.924922 ACTACTTCCTCCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
5190 7974 3.641906 ACTACTTCCTCCGTCCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
5191 7975 2.478292 ACTTCCTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
5192 7976 3.649843 ACTTCCTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
5193 7977 4.035112 ACTTCCTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
5194 7978 4.101119 ACTTCCTCCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
5195 7979 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
5196 7980 4.489737 TCCTCCGTCCCATAATGTAAGAT 58.510 43.478 0.00 0.00 0.00 2.40
5197 7981 4.283467 TCCTCCGTCCCATAATGTAAGATG 59.717 45.833 0.00 0.00 0.00 2.90
5198 7982 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
5199 7983 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
5200 7984 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
5201 7985 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
5202 7986 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
5222 8006 5.554437 TTTTGATACTAGTGTGGTGTCCA 57.446 39.130 5.39 0.00 0.00 4.02
5223 8007 5.554437 TTTGATACTAGTGTGGTGTCCAA 57.446 39.130 5.39 0.00 34.18 3.53
5224 8008 5.554437 TTGATACTAGTGTGGTGTCCAAA 57.446 39.130 5.39 0.00 34.18 3.28
5225 8009 5.554437 TGATACTAGTGTGGTGTCCAAAA 57.446 39.130 5.39 0.00 34.18 2.44
5226 8010 5.931294 TGATACTAGTGTGGTGTCCAAAAA 58.069 37.500 5.39 0.00 34.18 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.618594 CGTGGGTCTGTATTGATTCAGTG 59.381 47.826 0.00 0.00 33.89 3.66
2 3 3.861840 ACGTGGGTCTGTATTGATTCAG 58.138 45.455 0.00 0.00 0.00 3.02
3 4 3.973206 ACGTGGGTCTGTATTGATTCA 57.027 42.857 0.00 0.00 0.00 2.57
4 5 3.374058 CCAACGTGGGTCTGTATTGATTC 59.626 47.826 0.00 0.00 32.67 2.52
5 6 3.008594 TCCAACGTGGGTCTGTATTGATT 59.991 43.478 9.33 0.00 38.32 2.57
6 7 2.569853 TCCAACGTGGGTCTGTATTGAT 59.430 45.455 9.33 0.00 38.32 2.57
7 8 1.972075 TCCAACGTGGGTCTGTATTGA 59.028 47.619 9.33 0.00 38.32 2.57
8 9 2.465860 TCCAACGTGGGTCTGTATTG 57.534 50.000 9.33 0.00 38.32 1.90
9 10 2.569853 TCATCCAACGTGGGTCTGTATT 59.430 45.455 9.33 0.00 38.32 1.89
10 11 2.093658 GTCATCCAACGTGGGTCTGTAT 60.094 50.000 9.33 0.00 38.32 2.29
11 12 1.274167 GTCATCCAACGTGGGTCTGTA 59.726 52.381 9.33 0.00 38.32 2.74
12 13 0.034896 GTCATCCAACGTGGGTCTGT 59.965 55.000 9.33 0.00 38.32 3.41
13 14 0.034756 TGTCATCCAACGTGGGTCTG 59.965 55.000 9.33 8.34 38.32 3.51
14 15 0.034896 GTGTCATCCAACGTGGGTCT 59.965 55.000 9.33 0.00 38.32 3.85
15 16 0.250124 TGTGTCATCCAACGTGGGTC 60.250 55.000 9.33 0.00 38.32 4.46
16 17 0.181587 TTGTGTCATCCAACGTGGGT 59.818 50.000 9.33 0.00 38.32 4.51
17 18 0.591170 GTTGTGTCATCCAACGTGGG 59.409 55.000 1.09 1.09 38.32 4.61
18 19 1.002900 GTGTTGTGTCATCCAACGTGG 60.003 52.381 0.00 0.00 44.00 4.94
19 20 1.332816 CGTGTTGTGTCATCCAACGTG 60.333 52.381 0.00 0.00 44.00 4.49
20 21 0.934496 CGTGTTGTGTCATCCAACGT 59.066 50.000 0.00 0.00 44.00 3.99
21 22 0.934496 ACGTGTTGTGTCATCCAACG 59.066 50.000 0.00 0.00 44.00 4.10
22 23 1.937223 TGACGTGTTGTGTCATCCAAC 59.063 47.619 0.00 0.00 41.20 3.77
23 24 2.209273 CTGACGTGTTGTGTCATCCAA 58.791 47.619 0.00 0.00 44.70 3.53
24 25 1.540146 CCTGACGTGTTGTGTCATCCA 60.540 52.381 0.00 0.00 44.70 3.41
25 26 1.148310 CCTGACGTGTTGTGTCATCC 58.852 55.000 0.00 0.00 44.70 3.51
26 27 1.792949 GTCCTGACGTGTTGTGTCATC 59.207 52.381 0.00 0.00 44.70 2.92
27 28 1.138069 TGTCCTGACGTGTTGTGTCAT 59.862 47.619 0.00 0.00 44.70 3.06
28 29 0.533032 TGTCCTGACGTGTTGTGTCA 59.467 50.000 0.00 0.00 43.68 3.58
29 30 1.209128 CTGTCCTGACGTGTTGTGTC 58.791 55.000 0.00 0.00 36.88 3.67
30 31 0.810031 GCTGTCCTGACGTGTTGTGT 60.810 55.000 0.00 0.00 0.00 3.72
31 32 1.498865 GGCTGTCCTGACGTGTTGTG 61.499 60.000 0.00 0.00 0.00 3.33
32 33 1.227556 GGCTGTCCTGACGTGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
33 34 1.961277 GGGCTGTCCTGACGTGTTG 60.961 63.158 0.00 0.00 0.00 3.33
34 35 2.426023 GGGCTGTCCTGACGTGTT 59.574 61.111 0.00 0.00 0.00 3.32
35 36 3.991051 CGGGCTGTCCTGACGTGT 61.991 66.667 0.00 0.00 41.45 4.49
36 37 4.742201 CCGGGCTGTCCTGACGTG 62.742 72.222 0.00 0.00 41.45 4.49
38 39 4.436998 GACCGGGCTGTCCTGACG 62.437 72.222 6.32 0.00 41.45 4.35
46 47 3.072486 ATACGTTCGGACCGGGCTG 62.072 63.158 11.02 11.02 0.00 4.85
47 48 2.757099 ATACGTTCGGACCGGGCT 60.757 61.111 15.25 0.00 0.00 5.19
48 49 2.584143 CATACGTTCGGACCGGGC 60.584 66.667 15.25 0.21 0.00 6.13
49 50 2.584143 GCATACGTTCGGACCGGG 60.584 66.667 15.25 6.51 0.00 5.73
50 51 1.876714 CTGCATACGTTCGGACCGG 60.877 63.158 15.25 0.00 0.00 5.28
51 52 1.138036 TCTGCATACGTTCGGACCG 59.862 57.895 7.84 7.84 0.00 4.79
52 53 0.108992 TGTCTGCATACGTTCGGACC 60.109 55.000 16.37 0.00 37.70 4.46
53 54 1.269166 CTGTCTGCATACGTTCGGAC 58.731 55.000 13.75 13.75 38.67 4.79
54 55 0.885879 ACTGTCTGCATACGTTCGGA 59.114 50.000 0.00 0.00 0.00 4.55
55 56 1.710013 AACTGTCTGCATACGTTCGG 58.290 50.000 0.00 0.00 0.00 4.30
56 57 4.201589 CCTTAAACTGTCTGCATACGTTCG 60.202 45.833 0.00 0.00 0.00 3.95
57 58 4.927425 TCCTTAAACTGTCTGCATACGTTC 59.073 41.667 0.00 0.00 0.00 3.95
58 59 4.689345 GTCCTTAAACTGTCTGCATACGTT 59.311 41.667 0.00 2.83 0.00 3.99
59 60 4.243270 GTCCTTAAACTGTCTGCATACGT 58.757 43.478 0.00 0.00 0.00 3.57
60 61 3.617263 GGTCCTTAAACTGTCTGCATACG 59.383 47.826 0.00 0.00 0.00 3.06
61 62 3.939592 GGGTCCTTAAACTGTCTGCATAC 59.060 47.826 0.00 0.00 0.00 2.39
62 63 3.369052 CGGGTCCTTAAACTGTCTGCATA 60.369 47.826 0.00 0.00 0.00 3.14
63 64 2.615493 CGGGTCCTTAAACTGTCTGCAT 60.615 50.000 0.00 0.00 0.00 3.96
64 65 1.270625 CGGGTCCTTAAACTGTCTGCA 60.271 52.381 0.00 0.00 0.00 4.41
65 66 1.270678 ACGGGTCCTTAAACTGTCTGC 60.271 52.381 0.00 0.00 0.00 4.26
66 67 2.224209 ACACGGGTCCTTAAACTGTCTG 60.224 50.000 0.00 0.00 0.00 3.51
67 68 2.044758 ACACGGGTCCTTAAACTGTCT 58.955 47.619 0.00 0.00 0.00 3.41
68 69 2.538512 ACACGGGTCCTTAAACTGTC 57.461 50.000 0.00 0.00 0.00 3.51
69 70 4.420522 TTAACACGGGTCCTTAAACTGT 57.579 40.909 0.00 0.00 0.00 3.55
70 71 5.058490 TCTTTAACACGGGTCCTTAAACTG 58.942 41.667 0.00 0.00 0.00 3.16
71 72 5.294734 TCTTTAACACGGGTCCTTAAACT 57.705 39.130 0.00 0.00 0.00 2.66
72 73 5.618418 GCATCTTTAACACGGGTCCTTAAAC 60.618 44.000 0.00 0.00 0.00 2.01
73 74 4.456566 GCATCTTTAACACGGGTCCTTAAA 59.543 41.667 0.00 0.00 0.00 1.52
74 75 4.004982 GCATCTTTAACACGGGTCCTTAA 58.995 43.478 0.00 0.00 0.00 1.85
75 76 3.602483 GCATCTTTAACACGGGTCCTTA 58.398 45.455 0.00 0.00 0.00 2.69
76 77 2.433436 GCATCTTTAACACGGGTCCTT 58.567 47.619 0.00 0.00 0.00 3.36
77 78 1.339727 GGCATCTTTAACACGGGTCCT 60.340 52.381 0.00 0.00 0.00 3.85
78 79 1.092348 GGCATCTTTAACACGGGTCC 58.908 55.000 0.00 0.00 0.00 4.46
79 80 1.092348 GGGCATCTTTAACACGGGTC 58.908 55.000 0.00 0.00 0.00 4.46
80 81 0.696501 AGGGCATCTTTAACACGGGT 59.303 50.000 0.00 0.00 0.00 5.28
81 82 1.834188 AAGGGCATCTTTAACACGGG 58.166 50.000 0.00 0.00 29.99 5.28
82 83 3.374058 CACTAAGGGCATCTTTAACACGG 59.626 47.826 0.00 0.00 36.93 4.94
83 84 4.250464 TCACTAAGGGCATCTTTAACACG 58.750 43.478 0.00 0.00 36.93 4.49
84 85 6.759497 AATCACTAAGGGCATCTTTAACAC 57.241 37.500 0.00 0.00 36.93 3.32
85 86 7.175104 AGAAATCACTAAGGGCATCTTTAACA 58.825 34.615 0.00 0.00 36.93 2.41
86 87 7.336931 TGAGAAATCACTAAGGGCATCTTTAAC 59.663 37.037 0.00 0.00 36.93 2.01
87 88 7.402054 TGAGAAATCACTAAGGGCATCTTTAA 58.598 34.615 0.00 0.00 36.93 1.52
88 89 6.957631 TGAGAAATCACTAAGGGCATCTTTA 58.042 36.000 0.00 0.00 36.93 1.85
89 90 5.819991 TGAGAAATCACTAAGGGCATCTTT 58.180 37.500 0.00 0.00 36.93 2.52
90 91 5.435291 CTGAGAAATCACTAAGGGCATCTT 58.565 41.667 0.00 0.00 39.40 2.40
91 92 4.685575 GCTGAGAAATCACTAAGGGCATCT 60.686 45.833 0.00 0.00 0.00 2.90
92 93 3.563390 GCTGAGAAATCACTAAGGGCATC 59.437 47.826 0.00 0.00 0.00 3.91
93 94 3.201708 AGCTGAGAAATCACTAAGGGCAT 59.798 43.478 0.00 0.00 0.00 4.40
94 95 2.573462 AGCTGAGAAATCACTAAGGGCA 59.427 45.455 0.00 0.00 0.00 5.36
95 96 3.202097 GAGCTGAGAAATCACTAAGGGC 58.798 50.000 0.00 0.00 0.00 5.19
96 97 3.452474 CGAGCTGAGAAATCACTAAGGG 58.548 50.000 0.00 0.00 0.00 3.95
97 98 2.863137 GCGAGCTGAGAAATCACTAAGG 59.137 50.000 0.00 0.00 0.00 2.69
98 99 3.779759 AGCGAGCTGAGAAATCACTAAG 58.220 45.455 0.00 0.00 0.00 2.18
99 100 3.193479 TGAGCGAGCTGAGAAATCACTAA 59.807 43.478 0.84 0.00 0.00 2.24
100 101 2.755103 TGAGCGAGCTGAGAAATCACTA 59.245 45.455 0.84 0.00 0.00 2.74
101 102 1.547820 TGAGCGAGCTGAGAAATCACT 59.452 47.619 0.84 0.00 0.00 3.41
102 103 2.001812 TGAGCGAGCTGAGAAATCAC 57.998 50.000 0.84 0.00 0.00 3.06
103 104 2.749280 TTGAGCGAGCTGAGAAATCA 57.251 45.000 0.84 0.00 0.00 2.57
104 105 2.935201 ACATTGAGCGAGCTGAGAAATC 59.065 45.455 0.84 0.00 0.00 2.17
105 106 2.676839 CACATTGAGCGAGCTGAGAAAT 59.323 45.455 0.84 0.00 0.00 2.17
106 107 2.071540 CACATTGAGCGAGCTGAGAAA 58.928 47.619 0.84 0.00 0.00 2.52
107 108 1.273327 TCACATTGAGCGAGCTGAGAA 59.727 47.619 0.84 0.00 0.00 2.87
108 109 0.890683 TCACATTGAGCGAGCTGAGA 59.109 50.000 0.84 0.00 0.00 3.27
109 110 1.392853 GTTCACATTGAGCGAGCTGAG 59.607 52.381 0.84 0.00 0.00 3.35
110 111 1.001293 AGTTCACATTGAGCGAGCTGA 59.999 47.619 0.84 0.00 32.57 4.26
111 112 1.436600 AGTTCACATTGAGCGAGCTG 58.563 50.000 0.84 0.00 32.57 4.24
112 113 2.175878 AAGTTCACATTGAGCGAGCT 57.824 45.000 0.00 0.00 32.57 4.09
113 114 3.726190 GCTTAAGTTCACATTGAGCGAGC 60.726 47.826 4.02 0.00 32.57 5.03
114 115 3.681897 AGCTTAAGTTCACATTGAGCGAG 59.318 43.478 4.02 0.00 42.35 5.03
115 116 3.664107 AGCTTAAGTTCACATTGAGCGA 58.336 40.909 4.02 0.00 42.35 4.93
116 117 4.398247 GAAGCTTAAGTTCACATTGAGCG 58.602 43.478 0.00 0.00 42.35 5.03
117 118 4.457257 AGGAAGCTTAAGTTCACATTGAGC 59.543 41.667 0.00 0.00 39.01 4.26
118 119 6.876257 ACTAGGAAGCTTAAGTTCACATTGAG 59.124 38.462 0.00 2.88 0.00 3.02
119 120 6.650807 CACTAGGAAGCTTAAGTTCACATTGA 59.349 38.462 0.00 0.00 0.00 2.57
120 121 6.650807 TCACTAGGAAGCTTAAGTTCACATTG 59.349 38.462 0.00 4.23 0.00 2.82
121 122 6.651225 GTCACTAGGAAGCTTAAGTTCACATT 59.349 38.462 0.00 0.00 0.00 2.71
122 123 6.166982 GTCACTAGGAAGCTTAAGTTCACAT 58.833 40.000 0.00 0.00 0.00 3.21
123 124 5.510861 GGTCACTAGGAAGCTTAAGTTCACA 60.511 44.000 0.00 0.00 0.00 3.58
124 125 4.930405 GGTCACTAGGAAGCTTAAGTTCAC 59.070 45.833 0.00 3.19 0.00 3.18
125 126 4.591498 TGGTCACTAGGAAGCTTAAGTTCA 59.409 41.667 0.00 0.16 0.00 3.18
126 127 5.148651 TGGTCACTAGGAAGCTTAAGTTC 57.851 43.478 0.00 6.77 0.00 3.01
127 128 4.593634 ACTGGTCACTAGGAAGCTTAAGTT 59.406 41.667 0.00 0.00 0.00 2.66
128 129 4.161102 ACTGGTCACTAGGAAGCTTAAGT 58.839 43.478 0.00 0.35 0.00 2.24
129 130 4.810191 ACTGGTCACTAGGAAGCTTAAG 57.190 45.455 0.00 0.00 0.00 1.85
130 131 5.562298 AAACTGGTCACTAGGAAGCTTAA 57.438 39.130 0.00 0.00 0.00 1.85
131 132 6.869206 ATAAACTGGTCACTAGGAAGCTTA 57.131 37.500 0.00 0.00 0.00 3.09
132 133 5.763876 ATAAACTGGTCACTAGGAAGCTT 57.236 39.130 0.00 0.00 0.00 3.74
133 134 5.763876 AATAAACTGGTCACTAGGAAGCT 57.236 39.130 0.00 0.00 0.00 3.74
134 135 5.524281 GCTAATAAACTGGTCACTAGGAAGC 59.476 44.000 0.00 0.00 0.00 3.86
135 136 6.879400 AGCTAATAAACTGGTCACTAGGAAG 58.121 40.000 0.00 0.00 0.00 3.46
136 137 6.869206 AGCTAATAAACTGGTCACTAGGAA 57.131 37.500 0.00 0.00 0.00 3.36
137 138 7.966339 TTAGCTAATAAACTGGTCACTAGGA 57.034 36.000 0.86 0.00 0.00 2.94
138 139 9.046296 CAATTAGCTAATAAACTGGTCACTAGG 57.954 37.037 19.14 0.00 0.00 3.02
139 140 9.601217 ACAATTAGCTAATAAACTGGTCACTAG 57.399 33.333 19.14 0.00 0.00 2.57
140 141 9.595823 GACAATTAGCTAATAAACTGGTCACTA 57.404 33.333 19.14 0.00 0.00 2.74
141 142 7.553044 GGACAATTAGCTAATAAACTGGTCACT 59.447 37.037 19.14 0.00 0.00 3.41
142 143 7.553044 AGGACAATTAGCTAATAAACTGGTCAC 59.447 37.037 19.14 12.35 0.00 3.67
143 144 7.630082 AGGACAATTAGCTAATAAACTGGTCA 58.370 34.615 19.14 0.00 0.00 4.02
144 145 9.262358 CTAGGACAATTAGCTAATAAACTGGTC 57.738 37.037 19.14 16.82 0.00 4.02
145 146 8.211629 CCTAGGACAATTAGCTAATAAACTGGT 58.788 37.037 19.14 10.48 0.00 4.00
146 147 8.429641 TCCTAGGACAATTAGCTAATAAACTGG 58.570 37.037 19.14 15.06 0.00 4.00
147 148 9.832445 TTCCTAGGACAATTAGCTAATAAACTG 57.168 33.333 19.14 15.28 0.00 3.16
150 151 9.284968 GCATTCCTAGGACAATTAGCTAATAAA 57.715 33.333 19.14 0.00 0.00 1.40
151 152 8.660435 AGCATTCCTAGGACAATTAGCTAATAA 58.340 33.333 19.14 7.13 0.00 1.40
152 153 8.207350 AGCATTCCTAGGACAATTAGCTAATA 57.793 34.615 19.14 1.98 0.00 0.98
153 154 7.084268 AGCATTCCTAGGACAATTAGCTAAT 57.916 36.000 12.22 13.37 0.00 1.73
154 155 6.500589 AGCATTCCTAGGACAATTAGCTAA 57.499 37.500 12.22 8.99 0.00 3.09
155 156 6.500589 AAGCATTCCTAGGACAATTAGCTA 57.499 37.500 12.22 0.00 0.00 3.32
156 157 5.379706 AAGCATTCCTAGGACAATTAGCT 57.620 39.130 12.22 11.46 0.00 3.32
157 158 6.268566 CAAAAGCATTCCTAGGACAATTAGC 58.731 40.000 12.22 9.34 0.00 3.09
158 159 6.378280 ACCAAAAGCATTCCTAGGACAATTAG 59.622 38.462 12.22 0.00 0.00 1.73
159 160 6.252995 ACCAAAAGCATTCCTAGGACAATTA 58.747 36.000 12.22 0.00 0.00 1.40
160 161 5.086621 ACCAAAAGCATTCCTAGGACAATT 58.913 37.500 12.22 1.27 0.00 2.32
161 162 4.677182 ACCAAAAGCATTCCTAGGACAAT 58.323 39.130 12.22 0.00 0.00 2.71
162 163 4.112634 ACCAAAAGCATTCCTAGGACAA 57.887 40.909 12.22 0.00 0.00 3.18
163 164 3.806949 ACCAAAAGCATTCCTAGGACA 57.193 42.857 12.22 3.40 0.00 4.02
164 165 4.522789 TCAAACCAAAAGCATTCCTAGGAC 59.477 41.667 12.22 0.00 0.00 3.85
165 166 4.735369 TCAAACCAAAAGCATTCCTAGGA 58.265 39.130 7.62 7.62 0.00 2.94
166 167 5.221422 TGTTCAAACCAAAAGCATTCCTAGG 60.221 40.000 0.82 0.82 0.00 3.02
167 168 5.841810 TGTTCAAACCAAAAGCATTCCTAG 58.158 37.500 0.00 0.00 0.00 3.02
168 169 5.860941 TGTTCAAACCAAAAGCATTCCTA 57.139 34.783 0.00 0.00 0.00 2.94
169 170 4.751767 TGTTCAAACCAAAAGCATTCCT 57.248 36.364 0.00 0.00 0.00 3.36
170 171 5.809719 TTTGTTCAAACCAAAAGCATTCC 57.190 34.783 0.00 0.00 0.00 3.01
176 177 6.035327 CAGAGAGCTTTTGTTCAAACCAAAAG 59.965 38.462 17.06 17.06 44.29 2.27
177 178 5.868801 CAGAGAGCTTTTGTTCAAACCAAAA 59.131 36.000 0.00 0.00 31.68 2.44
178 179 5.184864 TCAGAGAGCTTTTGTTCAAACCAAA 59.815 36.000 0.00 0.00 31.68 3.28
179 180 4.704540 TCAGAGAGCTTTTGTTCAAACCAA 59.295 37.500 0.00 0.00 31.68 3.67
180 181 4.269183 TCAGAGAGCTTTTGTTCAAACCA 58.731 39.130 0.00 0.00 31.68 3.67
181 182 4.900635 TCAGAGAGCTTTTGTTCAAACC 57.099 40.909 0.00 0.00 31.68 3.27
182 183 6.292008 GCAATTCAGAGAGCTTTTGTTCAAAC 60.292 38.462 0.00 0.00 31.68 2.93
183 184 5.750067 GCAATTCAGAGAGCTTTTGTTCAAA 59.250 36.000 0.00 0.00 31.68 2.69
184 185 5.284079 GCAATTCAGAGAGCTTTTGTTCAA 58.716 37.500 0.00 0.00 31.68 2.69
185 186 4.261741 GGCAATTCAGAGAGCTTTTGTTCA 60.262 41.667 0.00 0.00 31.68 3.18
186 187 4.233005 GGCAATTCAGAGAGCTTTTGTTC 58.767 43.478 0.00 0.00 0.00 3.18
187 188 3.638160 TGGCAATTCAGAGAGCTTTTGTT 59.362 39.130 0.00 0.00 0.00 2.83
188 189 3.225104 TGGCAATTCAGAGAGCTTTTGT 58.775 40.909 0.00 0.00 0.00 2.83
189 190 3.928727 TGGCAATTCAGAGAGCTTTTG 57.071 42.857 0.00 0.00 0.00 2.44
190 191 4.942761 TTTGGCAATTCAGAGAGCTTTT 57.057 36.364 0.00 0.00 0.00 2.27
191 192 4.942761 TTTTGGCAATTCAGAGAGCTTT 57.057 36.364 0.00 0.00 0.00 3.51
192 193 4.942761 TTTTTGGCAATTCAGAGAGCTT 57.057 36.364 0.00 0.00 0.00 3.74
215 216 3.230976 AGGTCGCCCTGAAATTCTTTTT 58.769 40.909 0.00 0.00 40.58 1.94
231 232 0.662085 GAGAGGGCTTACGTAGGTCG 59.338 60.000 6.56 0.00 46.00 4.79
233 234 0.630134 AGGAGAGGGCTTACGTAGGT 59.370 55.000 6.56 0.00 0.00 3.08
254 255 1.287425 GCACCTCCTACGTGTTATGC 58.713 55.000 0.00 0.00 33.61 3.14
256 257 1.861982 AGGCACCTCCTACGTGTTAT 58.138 50.000 0.00 0.00 45.41 1.89
266 267 6.321181 TCATGATTTTTATTGTAGGCACCTCC 59.679 38.462 0.00 0.00 0.00 4.30
267 268 7.067494 ACTCATGATTTTTATTGTAGGCACCTC 59.933 37.037 0.00 0.00 0.00 3.85
277 278 6.545508 TGACGAGCACTCATGATTTTTATTG 58.454 36.000 0.00 0.00 0.00 1.90
355 364 1.301677 CCCTTCGCTGAAGTGCTTCC 61.302 60.000 14.33 0.00 37.92 3.46
369 378 0.900421 ACTACGTTGCCTACCCCTTC 59.100 55.000 0.00 0.00 0.00 3.46
384 393 5.213913 TGAGTCGTCGAAAGTGATACTAC 57.786 43.478 0.00 0.00 0.00 2.73
387 396 6.390987 AATTTGAGTCGTCGAAAGTGATAC 57.609 37.500 0.00 0.00 29.38 2.24
388 397 7.416154 AAAATTTGAGTCGTCGAAAGTGATA 57.584 32.000 0.00 0.00 29.38 2.15
391 400 6.192360 AGAAAAATTTGAGTCGTCGAAAGTG 58.808 36.000 0.00 0.00 29.38 3.16
392 401 6.359480 AGAAAAATTTGAGTCGTCGAAAGT 57.641 33.333 0.00 0.00 29.38 2.66
393 402 6.344234 GCAAGAAAAATTTGAGTCGTCGAAAG 60.344 38.462 0.00 0.00 29.38 2.62
394 403 5.454232 GCAAGAAAAATTTGAGTCGTCGAAA 59.546 36.000 0.00 0.00 29.38 3.46
395 404 4.967575 GCAAGAAAAATTTGAGTCGTCGAA 59.032 37.500 0.00 0.00 0.00 3.71
396 405 4.272504 AGCAAGAAAAATTTGAGTCGTCGA 59.727 37.500 0.00 0.00 0.00 4.20
397 406 4.527564 AGCAAGAAAAATTTGAGTCGTCG 58.472 39.130 0.00 0.00 0.00 5.12
399 408 5.890334 TGAAGCAAGAAAAATTTGAGTCGT 58.110 33.333 0.00 0.00 0.00 4.34
400 409 6.998258 ATGAAGCAAGAAAAATTTGAGTCG 57.002 33.333 0.00 0.00 0.00 4.18
407 416 8.711457 CGTTCCATAAATGAAGCAAGAAAAATT 58.289 29.630 0.00 0.00 0.00 1.82
408 417 7.148590 GCGTTCCATAAATGAAGCAAGAAAAAT 60.149 33.333 0.00 0.00 0.00 1.82
417 426 1.466855 GCGCGTTCCATAAATGAAGC 58.533 50.000 8.43 0.00 0.00 3.86
425 434 3.185365 CAGCACGCGCGTTCCATA 61.185 61.111 35.90 0.00 45.49 2.74
448 457 1.066358 AGCTAGTAAAGGCGACAACCC 60.066 52.381 0.00 0.00 0.00 4.11
450 459 1.918609 CGAGCTAGTAAAGGCGACAAC 59.081 52.381 0.00 0.00 0.00 3.32
464 473 0.179076 TACGACGATGACCCGAGCTA 60.179 55.000 0.00 0.00 0.00 3.32
497 506 0.651551 CGAAGAGTCTCGACGGGTAG 59.348 60.000 11.82 0.00 41.44 3.18
513 522 1.141019 GCTCGTATGGTGGAGCGAA 59.859 57.895 0.00 0.00 45.28 4.70
526 535 2.432628 GCACGTTAGGCAGCTCGT 60.433 61.111 0.00 0.00 36.99 4.18
568 577 1.269621 ACGGGAGAAGCGGATATTTCG 60.270 52.381 0.00 0.00 0.00 3.46
569 578 2.405172 GACGGGAGAAGCGGATATTTC 58.595 52.381 0.00 0.00 0.00 2.17
578 588 1.443828 GATCCAGGACGGGAGAAGC 59.556 63.158 0.00 0.00 41.08 3.86
592 602 3.495124 GAGATGCTCAGCTCGATCC 57.505 57.895 0.00 0.00 33.93 3.36
633 643 2.420890 GATCAGCTCGGCAGAGGG 59.579 66.667 15.89 0.00 44.51 4.30
634 644 2.027314 CGATCAGCTCGGCAGAGG 59.973 66.667 15.89 0.00 44.51 3.69
652 662 0.673956 GGGTTTGGACGGAGAGAAGC 60.674 60.000 0.00 0.00 0.00 3.86
663 673 0.609957 CTGATGCTGCTGGGTTTGGA 60.610 55.000 0.00 0.00 0.00 3.53
704 714 0.616111 GAGAGGGTGGAGAAGGCTCA 60.616 60.000 0.00 0.00 43.14 4.26
767 812 1.279271 CCCCGATTCCAGAACTCAAGT 59.721 52.381 0.00 0.00 0.00 3.16
768 813 1.555075 TCCCCGATTCCAGAACTCAAG 59.445 52.381 0.00 0.00 0.00 3.02
769 814 1.555075 CTCCCCGATTCCAGAACTCAA 59.445 52.381 0.00 0.00 0.00 3.02
770 815 1.195115 CTCCCCGATTCCAGAACTCA 58.805 55.000 0.00 0.00 0.00 3.41
771 816 0.179070 GCTCCCCGATTCCAGAACTC 60.179 60.000 0.00 0.00 0.00 3.01
772 817 0.618968 AGCTCCCCGATTCCAGAACT 60.619 55.000 0.00 0.00 0.00 3.01
773 818 0.179070 GAGCTCCCCGATTCCAGAAC 60.179 60.000 0.87 0.00 0.00 3.01
774 819 0.325671 AGAGCTCCCCGATTCCAGAA 60.326 55.000 10.93 0.00 0.00 3.02
775 820 1.045350 CAGAGCTCCCCGATTCCAGA 61.045 60.000 10.93 0.00 0.00 3.86
776 821 1.445095 CAGAGCTCCCCGATTCCAG 59.555 63.158 10.93 0.00 0.00 3.86
777 822 2.066393 CCAGAGCTCCCCGATTCCA 61.066 63.158 10.93 0.00 0.00 3.53
779 824 0.105778 CTTCCAGAGCTCCCCGATTC 59.894 60.000 10.93 0.00 0.00 2.52
780 825 1.341156 CCTTCCAGAGCTCCCCGATT 61.341 60.000 10.93 0.00 0.00 3.34
781 826 1.764054 CCTTCCAGAGCTCCCCGAT 60.764 63.158 10.93 0.00 0.00 4.18
782 827 2.364317 CCTTCCAGAGCTCCCCGA 60.364 66.667 10.93 0.00 0.00 5.14
918 963 2.768492 GGAGGCAAATCGCAGCAGG 61.768 63.158 0.00 0.00 45.17 4.85
939 992 1.269257 GCAAGCAACTCCAACCAAGAC 60.269 52.381 0.00 0.00 0.00 3.01
940 993 1.032014 GCAAGCAACTCCAACCAAGA 58.968 50.000 0.00 0.00 0.00 3.02
943 996 0.183492 AGAGCAAGCAACTCCAACCA 59.817 50.000 0.00 0.00 34.56 3.67
950 1003 6.348868 GCTTTTATGAGTAAGAGCAAGCAACT 60.349 38.462 6.01 0.00 43.72 3.16
951 1004 5.797434 GCTTTTATGAGTAAGAGCAAGCAAC 59.203 40.000 6.01 0.00 43.72 4.17
1336 2517 1.163554 GCAAGAACCTTGAGCTCCTG 58.836 55.000 12.15 3.56 0.00 3.86
1458 2639 2.946172 CTACCAGGCATGCCGCATCA 62.946 60.000 30.50 14.93 45.17 3.07
1488 2669 3.891049 ACTGACAAGCTCTTCTTTTGGT 58.109 40.909 0.00 0.00 31.27 3.67
1567 2748 3.215975 TGGCAAGTGTAGTTTTACCCAC 58.784 45.455 0.00 0.00 0.00 4.61
1789 2978 3.517602 TCGGGAAATCACACAACTATCG 58.482 45.455 0.00 0.00 0.00 2.92
1795 2984 2.938838 ACCTTTCGGGAAATCACACAA 58.061 42.857 0.00 0.00 38.76 3.33
1799 2988 7.619964 TTTAGATAACCTTTCGGGAAATCAC 57.380 36.000 0.00 0.00 38.76 3.06
1819 3008 9.301153 ACACTAAAGCATGACAAAAACTTTTAG 57.699 29.630 0.00 0.00 33.01 1.85
1820 3009 9.081997 CACACTAAAGCATGACAAAAACTTTTA 57.918 29.630 0.00 0.00 33.01 1.52
1822 3011 7.096551 ACACACTAAAGCATGACAAAAACTTT 58.903 30.769 0.00 0.00 35.00 2.66
1823 3012 6.630071 ACACACTAAAGCATGACAAAAACTT 58.370 32.000 0.00 0.00 0.00 2.66
1825 3014 7.700656 AGTTACACACTAAAGCATGACAAAAAC 59.299 33.333 0.00 0.00 31.97 2.43
1827 3016 7.328277 AGTTACACACTAAAGCATGACAAAA 57.672 32.000 0.00 0.00 31.97 2.44
1828 3017 6.935741 AGTTACACACTAAAGCATGACAAA 57.064 33.333 0.00 0.00 31.97 2.83
1829 3018 6.935741 AAGTTACACACTAAAGCATGACAA 57.064 33.333 0.00 0.00 32.94 3.18
1830 3019 6.935741 AAAGTTACACACTAAAGCATGACA 57.064 33.333 0.00 0.00 32.94 3.58
1831 3020 9.166126 GTTTAAAGTTACACACTAAAGCATGAC 57.834 33.333 0.00 0.00 32.94 3.06
1832 3021 8.894731 TGTTTAAAGTTACACACTAAAGCATGA 58.105 29.630 0.00 0.00 32.94 3.07
1833 3022 9.169468 CTGTTTAAAGTTACACACTAAAGCATG 57.831 33.333 0.00 0.00 32.94 4.06
1834 3023 8.899771 ACTGTTTAAAGTTACACACTAAAGCAT 58.100 29.630 0.00 0.00 32.94 3.79
1835 3024 8.271312 ACTGTTTAAAGTTACACACTAAAGCA 57.729 30.769 0.00 0.00 32.94 3.91
1836 3025 9.006215 CAACTGTTTAAAGTTACACACTAAAGC 57.994 33.333 0.00 0.00 38.34 3.51
1840 3029 9.097257 GGTACAACTGTTTAAAGTTACACACTA 57.903 33.333 0.00 0.00 38.34 2.74
1841 3030 7.201548 CGGTACAACTGTTTAAAGTTACACACT 60.202 37.037 0.00 0.00 38.34 3.55
1842 3031 6.901357 CGGTACAACTGTTTAAAGTTACACAC 59.099 38.462 0.00 0.00 38.34 3.82
1843 3032 6.815641 TCGGTACAACTGTTTAAAGTTACACA 59.184 34.615 0.00 0.00 38.34 3.72
1844 3033 7.232945 TCGGTACAACTGTTTAAAGTTACAC 57.767 36.000 0.00 0.00 38.34 2.90
1845 3034 7.518689 GCATCGGTACAACTGTTTAAAGTTACA 60.519 37.037 0.00 0.00 38.34 2.41
1846 3035 6.793680 GCATCGGTACAACTGTTTAAAGTTAC 59.206 38.462 0.00 0.00 38.34 2.50
1850 3039 4.084223 ACGCATCGGTACAACTGTTTAAAG 60.084 41.667 0.00 0.00 0.00 1.85
1885 3074 7.651304 CACACTTTGCATTGACCTAACAAAATA 59.349 33.333 0.00 0.00 33.44 1.40
1897 3086 1.774110 ACCACCACACTTTGCATTGA 58.226 45.000 0.00 0.00 0.00 2.57
1931 3125 7.852263 ACTAATCTTTATGAACTAGCACCACT 58.148 34.615 0.00 0.00 0.00 4.00
1932 3126 9.765795 ATACTAATCTTTATGAACTAGCACCAC 57.234 33.333 0.00 0.00 0.00 4.16
1965 3159 7.389803 AAAAGGCTTTGTGCTTACAATTTTT 57.610 28.000 14.19 0.00 42.39 1.94
2029 3223 1.825090 TGCTTGCCACATAGAGGTTG 58.175 50.000 0.00 0.00 0.00 3.77
2065 3259 6.755542 AATTCCCTAATTTTGTTGTCCCAA 57.244 33.333 0.00 0.00 30.98 4.12
2085 3279 5.370880 AGCTCAGGGTTCTATGTCCATAATT 59.629 40.000 0.00 0.00 0.00 1.40
2090 3284 2.254152 AGCTCAGGGTTCTATGTCCA 57.746 50.000 0.00 0.00 0.00 4.02
2091 3285 3.536570 GAAAGCTCAGGGTTCTATGTCC 58.463 50.000 0.00 0.00 32.26 4.02
2092 3286 3.198853 AGGAAAGCTCAGGGTTCTATGTC 59.801 47.826 0.00 0.00 32.26 3.06
2093 3287 3.185455 AGGAAAGCTCAGGGTTCTATGT 58.815 45.455 0.00 0.00 32.26 2.29
2095 3289 4.289672 TGAAAGGAAAGCTCAGGGTTCTAT 59.710 41.667 0.00 0.00 32.26 1.98
2096 3290 3.650942 TGAAAGGAAAGCTCAGGGTTCTA 59.349 43.478 0.00 0.00 32.26 2.10
2098 3292 2.863809 TGAAAGGAAAGCTCAGGGTTC 58.136 47.619 0.00 0.00 32.26 3.62
2099 3293 3.532641 ATGAAAGGAAAGCTCAGGGTT 57.467 42.857 0.00 0.00 34.34 4.11
2100 3294 3.532641 AATGAAAGGAAAGCTCAGGGT 57.467 42.857 0.00 0.00 0.00 4.34
2101 3295 3.828451 TGAAATGAAAGGAAAGCTCAGGG 59.172 43.478 0.00 0.00 0.00 4.45
2102 3296 5.458041 TTGAAATGAAAGGAAAGCTCAGG 57.542 39.130 0.00 0.00 0.00 3.86
2103 3297 6.510536 AGTTTGAAATGAAAGGAAAGCTCAG 58.489 36.000 0.00 0.00 0.00 3.35
2108 3302 6.315891 TGGCAAAGTTTGAAATGAAAGGAAAG 59.684 34.615 19.82 0.00 0.00 2.62
2166 3550 9.707957 AAACATAATAAAGGATGGTGACCATTA 57.292 29.630 19.60 8.21 45.26 1.90
2175 3559 9.586435 GAAGGAAACAAACATAATAAAGGATGG 57.414 33.333 0.00 0.00 0.00 3.51
2302 3687 2.283298 CCGATTGATCCCACAAGTCAG 58.717 52.381 0.00 0.00 33.22 3.51
2338 3723 4.599047 TCATTTTCCGAAAAGGCACAAT 57.401 36.364 12.37 0.00 40.77 2.71
2388 3773 4.392047 CTGGCAGCTACATTATCCAATCA 58.608 43.478 0.00 0.00 0.00 2.57
2397 3782 2.124570 CGCCCTGGCAGCTACATT 60.125 61.111 9.56 0.00 42.06 2.71
2399 3784 4.393155 CACGCCCTGGCAGCTACA 62.393 66.667 9.56 0.00 42.06 2.74
2514 3899 4.759516 TTTCTTTGAATTGTACCGAGCC 57.240 40.909 0.00 0.00 0.00 4.70
2607 3992 1.282738 TGAAGATCCTGCTTCATGGCA 59.717 47.619 0.00 0.00 46.73 4.92
2633 4019 5.189180 AGAGAATTGTTTATGCTCTCCCAC 58.811 41.667 0.00 0.00 44.76 4.61
2648 4034 0.798776 ACTTCGCGCCAAGAGAATTG 59.201 50.000 21.91 1.14 37.98 2.32
2684 4070 9.661954 TTTAGTATACCTCTCATCTCTTCCAAT 57.338 33.333 0.00 0.00 0.00 3.16
2723 4111 4.282195 GGTCGGAGATGAATAGGAAGATGT 59.718 45.833 0.00 0.00 40.67 3.06
2819 4207 3.546002 TTACAAACAAATCCTTCGGCG 57.454 42.857 0.00 0.00 0.00 6.46
2918 4306 9.884465 GTAATTACATCTCCATAGCATGTTTTC 57.116 33.333 10.81 0.00 32.88 2.29
2933 4321 8.377799 TCATGTATCCTGCATGTAATTACATCT 58.622 33.333 24.99 6.99 44.57 2.90
3230 4618 2.412089 GAGGTCGATTGTCGTTTTCCAG 59.588 50.000 0.00 0.00 41.35 3.86
3482 4870 0.676466 CCGAACAATGCAGGGTGCTA 60.676 55.000 0.00 0.00 45.31 3.49
3483 4871 1.973281 CCGAACAATGCAGGGTGCT 60.973 57.895 0.00 0.00 45.31 4.40
3521 4912 3.428045 CGCTAAGGCCTTTGATTTCCTTG 60.428 47.826 28.13 1.87 39.13 3.61
3522 4913 2.755103 CGCTAAGGCCTTTGATTTCCTT 59.245 45.455 28.13 1.02 41.41 3.36
3551 4943 7.876068 ACACGTAACTTCAATTCCTTCAGATTA 59.124 33.333 0.00 0.00 0.00 1.75
3648 5040 0.474660 AGGGAGAGGTGCTTGAGGTT 60.475 55.000 0.00 0.00 0.00 3.50
3828 5220 0.032952 TTGTCACTCGGCAGGTACAC 59.967 55.000 0.00 0.00 0.00 2.90
3914 5306 0.840617 TGCTTACCACCACCTTGTCA 59.159 50.000 0.00 0.00 0.00 3.58
3929 5321 2.190841 CGGAAACAACCCCGTGCTT 61.191 57.895 0.00 0.00 40.78 3.91
3930 5322 2.593436 CGGAAACAACCCCGTGCT 60.593 61.111 0.00 0.00 40.78 4.40
3944 5336 2.244695 TCAAAGCACTCTAGAACCGGA 58.755 47.619 9.46 0.00 0.00 5.14
3997 5389 2.103934 CTCCTGGCTCGAAGCTCG 59.896 66.667 6.78 0.00 41.99 5.03
4028 5420 3.808656 GCCAGAGCGAGCCTTTGC 61.809 66.667 0.00 0.00 37.95 3.68
4108 5506 4.781934 AGTAATACTCAAGCCAATGTCCC 58.218 43.478 0.00 0.00 0.00 4.46
4164 5562 3.990318 TGCTGACTCCATAGTATCGTG 57.010 47.619 0.00 0.00 35.56 4.35
4181 5579 3.127533 GCGGCGTCCTTGAATGCT 61.128 61.111 9.37 0.00 0.00 3.79
4203 5601 0.678048 GAGGGATGTCTTGGGTGCAC 60.678 60.000 8.80 8.80 0.00 4.57
4245 5643 2.434359 GAGAGGCGGTTCAACGGG 60.434 66.667 0.00 0.00 0.00 5.28
4253 6875 1.853963 AGTTACAGATGAGAGGCGGT 58.146 50.000 0.00 0.00 0.00 5.68
4258 6880 7.824289 TGGAATTGGTTAAGTTACAGATGAGAG 59.176 37.037 0.00 0.00 0.00 3.20
4319 6946 9.512588 ACTCAAGAAATCAAATACACAAGAGAT 57.487 29.630 0.00 0.00 0.00 2.75
4359 6986 4.088634 TGGGTCAATAAAGCTGAATTGCT 58.911 39.130 13.83 0.00 46.40 3.91
4360 6987 4.427312 CTGGGTCAATAAAGCTGAATTGC 58.573 43.478 13.83 10.04 33.91 3.56
4448 7075 7.707104 TCTCTCTCTTCACAACAAAATTTTCC 58.293 34.615 0.00 0.00 0.00 3.13
4473 7100 6.543430 AGAGCAATACAGAGAGATGTCTTT 57.457 37.500 0.00 0.00 34.56 2.52
4474 7101 6.543430 AAGAGCAATACAGAGAGATGTCTT 57.457 37.500 0.00 0.00 34.56 3.01
4531 7158 3.118261 CCAGCTTCTGGTATCTGGCTTAA 60.118 47.826 4.74 0.00 45.82 1.85
4532 7159 2.435805 CCAGCTTCTGGTATCTGGCTTA 59.564 50.000 4.74 0.00 45.82 3.09
4533 7160 1.211457 CCAGCTTCTGGTATCTGGCTT 59.789 52.381 4.74 0.00 45.82 4.35
4534 7161 0.835941 CCAGCTTCTGGTATCTGGCT 59.164 55.000 4.74 0.00 45.82 4.75
4535 7162 3.393472 CCAGCTTCTGGTATCTGGC 57.607 57.895 4.74 0.00 45.82 4.85
4564 7191 1.002033 GTACCTAGCATGTCCGTACCG 60.002 57.143 0.00 0.00 0.00 4.02
4598 7339 7.370383 ACACGAATTCTACTGAAAAATTGCAT 58.630 30.769 3.52 0.00 35.63 3.96
4654 7395 0.098200 CAAGATCAGCCACATGCACG 59.902 55.000 0.00 0.00 44.83 5.34
4663 7404 3.056962 TCGATCTAGCATCAAGATCAGCC 60.057 47.826 12.23 0.00 46.46 4.85
4780 7521 7.719193 TCTTTCATAAGTCATTGGAACTGAACA 59.281 33.333 0.00 0.00 32.98 3.18
4881 7622 6.681729 ACCATAGTTGACCTTAGTTGAGAA 57.318 37.500 0.00 0.00 0.00 2.87
4923 7664 7.834100 TCTTTACCTTTTCCCTAGGGATTTA 57.166 36.000 31.52 14.33 44.74 1.40
4930 7671 8.297426 GTGTTGATTTCTTTACCTTTTCCCTAG 58.703 37.037 0.00 0.00 0.00 3.02
4935 7676 8.318167 CGTTTGTGTTGATTTCTTTACCTTTTC 58.682 33.333 0.00 0.00 0.00 2.29
4939 7680 5.591067 TCCGTTTGTGTTGATTTCTTTACCT 59.409 36.000 0.00 0.00 0.00 3.08
4985 7726 3.798202 AGAAGATTACCGATGAACAGGC 58.202 45.455 0.00 0.00 0.00 4.85
5013 7754 6.480524 TCAGTACAGCACAACACATAATTC 57.519 37.500 0.00 0.00 0.00 2.17
5021 7762 4.202000 CCATTGTTTCAGTACAGCACAACA 60.202 41.667 0.00 0.00 30.40 3.33
5027 7768 3.503748 AGCTTCCATTGTTTCAGTACAGC 59.496 43.478 0.00 0.00 0.00 4.40
5052 7793 2.972625 TGTGTGCAGTATAGCAGGTTC 58.027 47.619 0.00 0.00 46.69 3.62
5057 7798 4.082841 CCAAAACATGTGTGCAGTATAGCA 60.083 41.667 0.00 0.00 43.35 3.49
5058 7799 4.082787 ACCAAAACATGTGTGCAGTATAGC 60.083 41.667 0.00 0.00 0.00 2.97
5059 7800 5.627499 ACCAAAACATGTGTGCAGTATAG 57.373 39.130 0.00 0.00 0.00 1.31
5061 7802 4.935352 AACCAAAACATGTGTGCAGTAT 57.065 36.364 0.00 0.00 0.00 2.12
5062 7803 4.428209 CAAACCAAAACATGTGTGCAGTA 58.572 39.130 0.00 0.00 0.00 2.74
5063 7804 3.260740 CAAACCAAAACATGTGTGCAGT 58.739 40.909 0.00 0.00 0.00 4.40
5064 7805 2.030701 GCAAACCAAAACATGTGTGCAG 59.969 45.455 0.00 0.00 31.81 4.41
5065 7806 2.005451 GCAAACCAAAACATGTGTGCA 58.995 42.857 0.00 0.00 31.81 4.57
5066 7807 2.030701 CAGCAAACCAAAACATGTGTGC 59.969 45.455 0.00 1.25 0.00 4.57
5067 7808 3.260740 ACAGCAAACCAAAACATGTGTG 58.739 40.909 0.00 0.35 0.00 3.82
5068 7809 3.608316 ACAGCAAACCAAAACATGTGT 57.392 38.095 0.00 0.00 0.00 3.72
5069 7810 3.801594 GGTACAGCAAACCAAAACATGTG 59.198 43.478 0.00 0.00 36.96 3.21
5072 7813 2.952978 TCGGTACAGCAAACCAAAACAT 59.047 40.909 0.00 0.00 36.78 2.71
5073 7814 2.097791 GTCGGTACAGCAAACCAAAACA 59.902 45.455 0.00 0.00 36.78 2.83
5114 7898 5.009010 GTCTTGGCATCAGAACTTTCAGAAA 59.991 40.000 0.00 0.00 0.00 2.52
5136 7920 2.175878 ACAGCAGATCAACCAGTGTC 57.824 50.000 0.00 0.00 0.00 3.67
5156 7940 9.176460 GACGGAGGAAGTAGTATATAGCTTAAT 57.824 37.037 0.00 0.00 0.00 1.40
5157 7941 7.609532 GGACGGAGGAAGTAGTATATAGCTTAA 59.390 40.741 0.00 0.00 0.00 1.85
5158 7942 7.108847 GGACGGAGGAAGTAGTATATAGCTTA 58.891 42.308 0.00 0.00 0.00 3.09
5159 7943 5.945191 GGACGGAGGAAGTAGTATATAGCTT 59.055 44.000 0.00 0.00 0.00 3.74
5160 7944 5.499313 GGACGGAGGAAGTAGTATATAGCT 58.501 45.833 0.00 0.00 0.00 3.32
5161 7945 4.639755 GGGACGGAGGAAGTAGTATATAGC 59.360 50.000 0.00 0.00 0.00 2.97
5162 7946 5.813383 TGGGACGGAGGAAGTAGTATATAG 58.187 45.833 0.00 0.00 0.00 1.31
5163 7947 5.848286 TGGGACGGAGGAAGTAGTATATA 57.152 43.478 0.00 0.00 0.00 0.86
5164 7948 4.736611 TGGGACGGAGGAAGTAGTATAT 57.263 45.455 0.00 0.00 0.00 0.86
5165 7949 4.736611 ATGGGACGGAGGAAGTAGTATA 57.263 45.455 0.00 0.00 0.00 1.47
5166 7950 3.614568 ATGGGACGGAGGAAGTAGTAT 57.385 47.619 0.00 0.00 0.00 2.12
5167 7951 4.524802 TTATGGGACGGAGGAAGTAGTA 57.475 45.455 0.00 0.00 0.00 1.82
5168 7952 3.393426 TTATGGGACGGAGGAAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
5169 7953 3.641906 ACATTATGGGACGGAGGAAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
5170 7954 3.649843 ACATTATGGGACGGAGGAAGTA 58.350 45.455 0.00 0.00 0.00 2.24
5171 7955 2.478292 ACATTATGGGACGGAGGAAGT 58.522 47.619 0.00 0.00 0.00 3.01
5172 7956 4.344102 TCTTACATTATGGGACGGAGGAAG 59.656 45.833 0.00 0.00 0.00 3.46
5173 7957 4.291792 TCTTACATTATGGGACGGAGGAA 58.708 43.478 0.00 0.00 0.00 3.36
5174 7958 3.918566 TCTTACATTATGGGACGGAGGA 58.081 45.455 0.00 0.00 0.00 3.71
5175 7959 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
5176 7960 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
5177 7961 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
5178 7962 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
5199 7983 5.931294 TGGACACCACACTAGTATCAAAAA 58.069 37.500 0.00 0.00 0.00 1.94
5200 7984 5.554437 TGGACACCACACTAGTATCAAAA 57.446 39.130 0.00 0.00 0.00 2.44
5201 7985 5.554437 TTGGACACCACACTAGTATCAAA 57.446 39.130 0.00 0.00 30.78 2.69
5202 7986 5.554437 TTTGGACACCACACTAGTATCAA 57.446 39.130 0.00 0.00 30.78 2.57
5203 7987 5.554437 TTTTGGACACCACACTAGTATCA 57.446 39.130 0.00 0.00 30.78 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.