Multiple sequence alignment - TraesCS5A01G271600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G271600 chr5A 100.000 2384 0 0 1 2384 481908814 481906431 0.000000e+00 4403.0
1 TraesCS5A01G271600 chr5A 100.000 121 0 0 2588 2708 481906227 481906107 9.760000e-55 224.0
2 TraesCS5A01G271600 chr5D 87.732 1508 103 36 422 1882 381408492 381407020 0.000000e+00 1685.0
3 TraesCS5A01G271600 chr5D 90.719 334 23 5 66 393 381408902 381408571 3.200000e-119 438.0
4 TraesCS5A01G271600 chr5B 86.370 1438 95 42 505 1879 457340314 457338915 0.000000e+00 1476.0
5 TraesCS5A01G271600 chr5B 91.489 141 8 3 35 174 457341295 457341158 9.900000e-45 191.0
6 TraesCS5A01G271600 chr5B 93.388 121 8 0 2588 2708 457321956 457321836 2.140000e-41 180.0
7 TraesCS5A01G271600 chr5B 84.286 140 14 4 198 336 457341024 457340892 2.190000e-26 130.0
8 TraesCS5A01G271600 chr2D 91.872 406 28 5 1983 2384 284522498 284522902 1.820000e-156 562.0
9 TraesCS5A01G271600 chr7D 91.176 408 30 6 1982 2384 109793308 109792902 1.420000e-152 549.0
10 TraesCS5A01G271600 chr7D 90.887 406 33 4 1982 2384 616016310 616016714 2.370000e-150 542.0
11 TraesCS5A01G271600 chr7D 84.762 105 13 3 1378 1480 422952737 422952840 4.770000e-18 102.0
12 TraesCS5A01G271600 chr6B 90.954 409 35 2 1978 2384 11339295 11338887 1.420000e-152 549.0
13 TraesCS5A01G271600 chr6A 91.155 407 29 7 1982 2384 18517540 18517137 1.830000e-151 545.0
14 TraesCS5A01G271600 chrUn 90.709 409 36 2 1978 2384 370255314 370255722 6.590000e-151 544.0
15 TraesCS5A01G271600 chrUn 90.887 406 34 3 1982 2384 304893894 304894299 2.370000e-150 542.0
16 TraesCS5A01G271600 chr7A 91.111 405 31 5 1983 2384 115663105 115663507 6.590000e-151 544.0
17 TraesCS5A01G271600 chr7A 84.762 105 13 3 1378 1480 510148362 510148259 4.770000e-18 102.0
18 TraesCS5A01G271600 chr3B 90.887 406 34 3 1982 2384 19756211 19755806 2.370000e-150 542.0
19 TraesCS5A01G271600 chr7B 83.810 105 14 3 1378 1480 440011082 440011185 2.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G271600 chr5A 481906107 481908814 2707 True 2313.5 4403 100.000000 1 2708 2 chr5A.!!$R1 2707
1 TraesCS5A01G271600 chr5D 381407020 381408902 1882 True 1061.5 1685 89.225500 66 1882 2 chr5D.!!$R1 1816
2 TraesCS5A01G271600 chr5B 457338915 457341295 2380 True 599.0 1476 87.381667 35 1879 3 chr5B.!!$R2 1844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 475 0.032267 GATAAAGGAGAGCGGACCGG 59.968 60.0 17.22 0.0 0.00 5.28 F
516 1102 0.180406 ACTGACGTGACTGGCCTTTT 59.820 50.0 3.32 0.0 0.00 2.27 F
686 1277 0.595588 ACACAGTCTCTGTCAGCTCG 59.404 55.0 0.00 0.0 43.43 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1667 2339 0.034059 AGCAGGTGGTTTCGTCTCTG 59.966 55.0 0.00 0.0 0.0 3.35 R
1668 2340 0.034059 CAGCAGGTGGTTTCGTCTCT 59.966 55.0 0.00 0.0 0.0 3.10 R
1980 2652 0.036765 GTGCACCAGATACGTTCCCA 60.037 55.0 5.22 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.415426 GAGGCGCTCCAGCTACTC 59.585 66.667 7.64 0.00 39.32 2.59
21 22 2.363018 AGGCGCTCCAGCTACTCA 60.363 61.111 7.64 0.00 39.32 3.41
22 23 1.949847 GAGGCGCTCCAGCTACTCAA 61.950 60.000 7.64 0.00 39.56 3.02
23 24 1.144936 GGCGCTCCAGCTACTCAAT 59.855 57.895 7.64 0.00 39.32 2.57
24 25 0.462759 GGCGCTCCAGCTACTCAATT 60.463 55.000 7.64 0.00 39.32 2.32
25 26 1.373570 GCGCTCCAGCTACTCAATTT 58.626 50.000 0.00 0.00 39.32 1.82
26 27 2.550978 GCGCTCCAGCTACTCAATTTA 58.449 47.619 0.00 0.00 39.32 1.40
27 28 2.541762 GCGCTCCAGCTACTCAATTTAG 59.458 50.000 0.00 0.00 39.32 1.85
28 29 2.541762 CGCTCCAGCTACTCAATTTAGC 59.458 50.000 0.17 0.17 42.06 3.09
37 38 6.976636 GCTACTCAATTTAGCTTCTGAAGT 57.023 37.500 17.97 8.18 39.17 3.01
39 40 7.901002 GCTACTCAATTTAGCTTCTGAAGTAC 58.099 38.462 17.97 3.37 39.17 2.73
40 41 7.762159 GCTACTCAATTTAGCTTCTGAAGTACT 59.238 37.037 17.97 10.32 39.17 2.73
41 42 9.296400 CTACTCAATTTAGCTTCTGAAGTACTC 57.704 37.037 17.97 2.34 0.00 2.59
42 43 7.671302 ACTCAATTTAGCTTCTGAAGTACTCA 58.329 34.615 17.97 0.00 0.00 3.41
49 50 6.268825 AGCTTCTGAAGTACTCATCGTTTA 57.731 37.500 17.97 0.00 32.14 2.01
50 51 6.326375 AGCTTCTGAAGTACTCATCGTTTAG 58.674 40.000 17.97 0.00 32.14 1.85
191 195 0.605589 GCACCTGTCCAGTTGGTACC 60.606 60.000 4.43 4.43 36.34 3.34
261 375 3.181540 CGAAGCACGAGTCAAACATGTAG 60.182 47.826 0.00 0.00 45.77 2.74
297 411 3.192633 GGAAGCAACGGGTGTTCATATTT 59.807 43.478 0.00 0.00 35.72 1.40
314 428 7.773489 TCATATTTGAAGTCATGTTTGGGAA 57.227 32.000 0.00 0.00 0.00 3.97
358 473 1.757699 ACTGATAAAGGAGAGCGGACC 59.242 52.381 0.00 0.00 0.00 4.46
359 474 0.744874 TGATAAAGGAGAGCGGACCG 59.255 55.000 10.29 10.29 0.00 4.79
360 475 0.032267 GATAAAGGAGAGCGGACCGG 59.968 60.000 17.22 0.00 0.00 5.28
381 884 6.600032 ACCGGCAATATATTTCAACAGTTACA 59.400 34.615 0.00 0.00 0.00 2.41
382 885 7.132213 CCGGCAATATATTTCAACAGTTACAG 58.868 38.462 0.00 0.00 0.00 2.74
385 888 8.673711 GGCAATATATTTCAACAGTTACAGACA 58.326 33.333 0.00 0.00 0.00 3.41
411 959 6.814146 AGTTTTTGTAATTTTGGCGAGACAAA 59.186 30.769 0.00 0.00 38.48 2.83
416 964 6.507900 TGTAATTTTGGCGAGACAAATTCAA 58.492 32.000 4.81 0.00 39.80 2.69
420 968 0.517316 GGCGAGACAAATTCAAGCGT 59.483 50.000 0.00 0.00 31.74 5.07
431 1015 5.009610 ACAAATTCAAGCGTGTAAAGTGGAT 59.990 36.000 0.00 0.00 0.00 3.41
458 1042 5.175859 GTCTTAACGAATCCTGTCATTCCA 58.824 41.667 0.00 0.00 30.03 3.53
470 1055 6.778821 TCCTGTCATTCCATCTAGAAAAACA 58.221 36.000 0.00 0.00 0.00 2.83
496 1082 4.103357 GCATGCATCTTCAAGTTGATCAC 58.897 43.478 14.21 0.00 0.00 3.06
499 1085 4.392047 TGCATCTTCAAGTTGATCACACT 58.608 39.130 6.36 0.00 0.00 3.55
500 1086 4.214758 TGCATCTTCAAGTTGATCACACTG 59.785 41.667 6.36 0.99 0.00 3.66
501 1087 4.453478 GCATCTTCAAGTTGATCACACTGA 59.547 41.667 6.36 0.00 0.00 3.41
502 1088 5.616424 GCATCTTCAAGTTGATCACACTGAC 60.616 44.000 6.36 0.00 0.00 3.51
503 1089 4.051237 TCTTCAAGTTGATCACACTGACG 58.949 43.478 6.36 0.00 0.00 4.35
516 1102 0.180406 ACTGACGTGACTGGCCTTTT 59.820 50.000 3.32 0.00 0.00 2.27
517 1103 1.308998 CTGACGTGACTGGCCTTTTT 58.691 50.000 3.32 0.00 0.00 1.94
561 1148 1.671054 CGGCCGTTGTTGACCTCAT 60.671 57.895 19.50 0.00 0.00 2.90
563 1150 0.605319 GGCCGTTGTTGACCTCATCA 60.605 55.000 0.00 0.00 34.65 3.07
564 1151 0.798776 GCCGTTGTTGACCTCATCAG 59.201 55.000 0.00 0.00 38.99 2.90
565 1152 0.798776 CCGTTGTTGACCTCATCAGC 59.201 55.000 0.00 0.00 38.99 4.26
566 1153 1.609061 CCGTTGTTGACCTCATCAGCT 60.609 52.381 0.00 0.00 39.22 4.24
585 1172 0.976073 TAGGTCTGGGTGGTAGCAGC 60.976 60.000 15.56 15.56 0.00 5.25
587 1174 1.078848 GTCTGGGTGGTAGCAGCAG 60.079 63.158 24.00 18.18 0.00 4.24
616 1207 1.680522 ATGTGCGCTACTCCCTCCTG 61.681 60.000 9.73 0.00 0.00 3.86
653 1244 2.505866 GGCAAGCAAAGAAACGTATCG 58.494 47.619 0.00 0.00 0.00 2.92
686 1277 0.595588 ACACAGTCTCTGTCAGCTCG 59.404 55.000 0.00 0.00 43.43 5.03
712 1303 3.687340 CGTCAACGGGCCATTTTAC 57.313 52.632 4.39 0.00 35.37 2.01
714 1305 1.135803 CGTCAACGGGCCATTTTACTG 60.136 52.381 4.39 0.00 35.37 2.74
743 1334 0.951040 GTGCCCTCCTCGTCAAACAG 60.951 60.000 0.00 0.00 0.00 3.16
755 1350 3.496884 TCGTCAAACAGTCAGGCAATAAC 59.503 43.478 0.00 0.00 0.00 1.89
762 1357 4.526970 ACAGTCAGGCAATAACCTAATGG 58.473 43.478 0.00 0.00 38.26 3.16
763 1358 3.316308 CAGTCAGGCAATAACCTAATGGC 59.684 47.826 0.00 0.00 38.26 4.40
764 1359 2.623416 GTCAGGCAATAACCTAATGGCC 59.377 50.000 0.00 0.00 45.18 5.36
802 1397 4.146058 CTTGACCAGCACAGCACA 57.854 55.556 0.00 0.00 0.00 4.57
804 1399 1.512996 CTTGACCAGCACAGCACAGG 61.513 60.000 0.00 0.00 0.00 4.00
805 1400 3.360340 GACCAGCACAGCACAGGC 61.360 66.667 0.00 0.00 41.61 4.85
834 1431 2.109425 ACACCACTTAATCTTCCGCC 57.891 50.000 0.00 0.00 0.00 6.13
835 1432 1.006832 CACCACTTAATCTTCCGCCG 58.993 55.000 0.00 0.00 0.00 6.46
871 1493 2.671963 GAAGCGAACACCACCCCC 60.672 66.667 0.00 0.00 0.00 5.40
902 1535 1.330829 GCAACCGCTGCCTATTTCTAC 59.669 52.381 0.00 0.00 46.13 2.59
911 1544 4.372656 CTGCCTATTTCTACTTCTTCCCG 58.627 47.826 0.00 0.00 0.00 5.14
927 1560 4.920112 CGCACGGACCACCACCAA 62.920 66.667 0.00 0.00 35.59 3.67
928 1561 2.978010 GCACGGACCACCACCAAG 60.978 66.667 0.00 0.00 35.59 3.61
929 1562 2.978010 CACGGACCACCACCAAGC 60.978 66.667 0.00 0.00 35.59 4.01
930 1563 3.168528 ACGGACCACCACCAAGCT 61.169 61.111 0.00 0.00 35.59 3.74
931 1564 2.358737 CGGACCACCACCAAGCTC 60.359 66.667 0.00 0.00 35.59 4.09
932 1565 2.034221 GGACCACCACCAAGCTCC 59.966 66.667 0.00 0.00 35.97 4.70
933 1566 2.829384 GGACCACCACCAAGCTCCA 61.829 63.158 0.00 0.00 35.97 3.86
934 1567 1.600916 GACCACCACCAAGCTCCAC 60.601 63.158 0.00 0.00 0.00 4.02
940 1590 2.111043 ACCAAGCTCCACACCACG 59.889 61.111 0.00 0.00 0.00 4.94
974 1624 2.310233 CCGCAGTTGACCGTCACAG 61.310 63.158 0.00 0.00 0.00 3.66
994 1644 0.599728 CTCAGGCGATAAGAGCAGGC 60.600 60.000 0.00 0.00 36.08 4.85
1455 2127 2.899838 TGCAGGCACGTGTTCCAC 60.900 61.111 18.38 7.73 0.00 4.02
1578 2250 1.078848 GAGTGGAACGCCTGCTGAT 60.079 57.895 0.00 0.00 45.86 2.90
1581 2253 1.375908 TGGAACGCCTGCTGATGAC 60.376 57.895 0.00 0.00 34.31 3.06
1599 2271 4.043200 GCTTTGCCTGCGGTGGTC 62.043 66.667 0.00 0.00 0.00 4.02
1622 2294 2.104859 CGACGGTAGCAGAGACGGA 61.105 63.158 0.00 0.00 0.00 4.69
1623 2295 1.722677 GACGGTAGCAGAGACGGAG 59.277 63.158 0.00 0.00 0.00 4.63
1680 2352 2.546778 GTGACAACAGAGACGAAACCA 58.453 47.619 0.00 0.00 0.00 3.67
1713 2385 1.359475 GCCGACGGTGTAGATCCTC 59.641 63.158 16.73 0.00 0.00 3.71
1846 2518 5.932619 ATTCCGCCTGTATATACATGCTA 57.067 39.130 28.95 19.34 42.97 3.49
1855 2527 7.329717 GCCTGTATATACATGCTAAGACTTGAC 59.670 40.741 26.60 3.26 42.23 3.18
1862 2534 5.473931 ACATGCTAAGACTTGACACTACAG 58.526 41.667 0.00 0.00 0.00 2.74
1895 2567 8.771920 ACAGATCTTGTTAATTGACAATACGA 57.228 30.769 15.31 10.29 38.71 3.43
1896 2568 9.383519 ACAGATCTTGTTAATTGACAATACGAT 57.616 29.630 15.31 14.00 38.71 3.73
1897 2569 9.642312 CAGATCTTGTTAATTGACAATACGATG 57.358 33.333 15.31 8.14 38.71 3.84
1898 2570 9.383519 AGATCTTGTTAATTGACAATACGATGT 57.616 29.630 15.31 10.68 38.71 3.06
1901 2573 9.093970 TCTTGTTAATTGACAATACGATGTAGG 57.906 33.333 15.31 1.71 38.71 3.18
1902 2574 9.093970 CTTGTTAATTGACAATACGATGTAGGA 57.906 33.333 15.31 0.00 38.71 2.94
1903 2575 9.438228 TTGTTAATTGACAATACGATGTAGGAA 57.562 29.630 11.43 0.00 34.77 3.36
1904 2576 9.607988 TGTTAATTGACAATACGATGTAGGAAT 57.392 29.630 0.00 0.00 32.57 3.01
1908 2580 9.832445 AATTGACAATACGATGTAGGAATAGTT 57.168 29.630 0.00 0.00 32.57 2.24
1909 2581 8.867112 TTGACAATACGATGTAGGAATAGTTC 57.133 34.615 0.00 0.00 32.57 3.01
1910 2582 8.234136 TGACAATACGATGTAGGAATAGTTCT 57.766 34.615 0.00 0.00 32.57 3.01
1911 2583 8.350722 TGACAATACGATGTAGGAATAGTTCTC 58.649 37.037 0.00 0.00 32.57 2.87
1912 2584 8.466617 ACAATACGATGTAGGAATAGTTCTCT 57.533 34.615 0.00 0.00 0.00 3.10
1913 2585 9.570468 ACAATACGATGTAGGAATAGTTCTCTA 57.430 33.333 0.00 0.00 0.00 2.43
1991 2663 7.803279 AAAATCCTTTAGATGGGAACGTATC 57.197 36.000 0.00 0.00 34.56 2.24
1992 2664 6.749036 AATCCTTTAGATGGGAACGTATCT 57.251 37.500 4.12 4.12 36.94 1.98
1993 2665 5.531122 TCCTTTAGATGGGAACGTATCTG 57.469 43.478 8.50 0.00 35.25 2.90
1994 2666 4.344102 TCCTTTAGATGGGAACGTATCTGG 59.656 45.833 8.50 2.65 35.25 3.86
1995 2667 4.101119 CCTTTAGATGGGAACGTATCTGGT 59.899 45.833 8.50 0.00 35.25 4.00
1996 2668 4.665833 TTAGATGGGAACGTATCTGGTG 57.334 45.455 8.50 0.00 35.25 4.17
1997 2669 1.139058 AGATGGGAACGTATCTGGTGC 59.861 52.381 0.00 0.00 32.95 5.01
1998 2670 0.908910 ATGGGAACGTATCTGGTGCA 59.091 50.000 0.00 0.00 0.00 4.57
1999 2671 0.036765 TGGGAACGTATCTGGTGCAC 60.037 55.000 8.80 8.80 0.00 4.57
2000 2672 0.743345 GGGAACGTATCTGGTGCACC 60.743 60.000 29.67 29.67 0.00 5.01
2001 2673 0.036765 GGAACGTATCTGGTGCACCA 60.037 55.000 35.49 35.49 45.30 4.17
2002 2674 1.609580 GGAACGTATCTGGTGCACCAA 60.610 52.381 36.71 26.88 46.97 3.67
2003 2675 1.732259 GAACGTATCTGGTGCACCAAG 59.268 52.381 36.71 28.54 46.97 3.61
2004 2676 0.036388 ACGTATCTGGTGCACCAAGG 60.036 55.000 36.71 28.27 46.97 3.61
2005 2677 1.369091 CGTATCTGGTGCACCAAGGC 61.369 60.000 36.71 24.56 46.97 4.35
2006 2678 0.322456 GTATCTGGTGCACCAAGGCA 60.322 55.000 36.71 21.83 46.97 4.75
2007 2679 0.403655 TATCTGGTGCACCAAGGCAA 59.596 50.000 36.71 20.61 46.97 4.52
2008 2680 0.251922 ATCTGGTGCACCAAGGCAAT 60.252 50.000 36.71 21.76 46.97 3.56
2009 2681 0.469705 TCTGGTGCACCAAGGCAATT 60.470 50.000 36.71 0.00 46.97 2.32
2010 2682 0.320073 CTGGTGCACCAAGGCAATTG 60.320 55.000 36.71 20.12 46.97 2.32
2011 2683 0.758310 TGGTGCACCAAGGCAATTGA 60.758 50.000 36.10 8.77 46.93 2.57
2012 2684 0.609662 GGTGCACCAAGGCAATTGAT 59.390 50.000 31.23 0.00 46.93 2.57
2013 2685 1.673626 GGTGCACCAAGGCAATTGATG 60.674 52.381 31.23 4.54 46.93 3.07
2025 2697 3.141002 CAATTGATGCTACCAGTGCAC 57.859 47.619 9.40 9.40 43.59 4.57
2026 2698 1.755179 ATTGATGCTACCAGTGCACC 58.245 50.000 14.63 0.00 43.59 5.01
2027 2699 0.673333 TTGATGCTACCAGTGCACCG 60.673 55.000 14.63 2.26 43.59 4.94
2028 2700 1.815421 GATGCTACCAGTGCACCGG 60.815 63.158 17.83 17.83 43.59 5.28
2029 2701 2.238847 GATGCTACCAGTGCACCGGA 62.239 60.000 25.94 6.17 43.59 5.14
2030 2702 2.434359 GCTACCAGTGCACCGGAC 60.434 66.667 25.94 10.53 0.00 4.79
2031 2703 2.264794 CTACCAGTGCACCGGACC 59.735 66.667 25.94 0.00 0.00 4.46
2032 2704 3.310860 CTACCAGTGCACCGGACCC 62.311 68.421 25.94 0.00 0.00 4.46
2042 2714 4.715523 CCGGACCCCGTTGCACAT 62.716 66.667 0.00 0.00 46.80 3.21
2043 2715 2.671619 CGGACCCCGTTGCACATT 60.672 61.111 0.00 0.00 42.73 2.71
2044 2716 1.376166 CGGACCCCGTTGCACATTA 60.376 57.895 0.00 0.00 42.73 1.90
2045 2717 0.956410 CGGACCCCGTTGCACATTAA 60.956 55.000 0.00 0.00 42.73 1.40
2046 2718 1.249407 GGACCCCGTTGCACATTAAA 58.751 50.000 0.00 0.00 0.00 1.52
2047 2719 1.614413 GGACCCCGTTGCACATTAAAA 59.386 47.619 0.00 0.00 0.00 1.52
2048 2720 2.036089 GGACCCCGTTGCACATTAAAAA 59.964 45.455 0.00 0.00 0.00 1.94
2092 2764 8.447787 AAAAATTTAGTGCATCGATACAACAC 57.552 30.769 0.00 5.98 0.00 3.32
2093 2765 5.734855 ATTTAGTGCATCGATACAACACC 57.265 39.130 0.00 0.00 31.58 4.16
2094 2766 2.760634 AGTGCATCGATACAACACCA 57.239 45.000 0.00 0.00 31.58 4.17
2095 2767 3.052455 AGTGCATCGATACAACACCAA 57.948 42.857 0.00 0.00 31.58 3.67
2096 2768 3.609853 AGTGCATCGATACAACACCAAT 58.390 40.909 0.00 0.00 31.58 3.16
2097 2769 3.374988 AGTGCATCGATACAACACCAATG 59.625 43.478 0.00 0.00 31.58 2.82
2098 2770 3.126858 GTGCATCGATACAACACCAATGT 59.873 43.478 0.00 0.00 42.46 2.71
2099 2771 4.331443 GTGCATCGATACAACACCAATGTA 59.669 41.667 0.00 0.00 38.45 2.29
2100 2772 5.007626 GTGCATCGATACAACACCAATGTAT 59.992 40.000 0.00 0.00 44.49 2.29
2108 2780 5.689383 ACAACACCAATGTATCTTGTCAC 57.311 39.130 0.00 0.00 38.45 3.67
2109 2781 5.129634 ACAACACCAATGTATCTTGTCACA 58.870 37.500 0.00 0.00 38.45 3.58
2110 2782 5.592282 ACAACACCAATGTATCTTGTCACAA 59.408 36.000 0.00 0.00 38.45 3.33
2111 2783 6.096141 ACAACACCAATGTATCTTGTCACAAA 59.904 34.615 0.00 0.00 38.45 2.83
2112 2784 6.707440 ACACCAATGTATCTTGTCACAAAA 57.293 33.333 0.00 0.00 37.26 2.44
2113 2785 7.106439 ACACCAATGTATCTTGTCACAAAAA 57.894 32.000 0.00 0.00 37.26 1.94
2114 2786 7.725251 ACACCAATGTATCTTGTCACAAAAAT 58.275 30.769 0.00 0.00 37.26 1.82
2115 2787 8.203485 ACACCAATGTATCTTGTCACAAAAATT 58.797 29.630 0.00 0.00 37.26 1.82
2116 2788 8.702438 CACCAATGTATCTTGTCACAAAAATTC 58.298 33.333 0.00 0.00 0.00 2.17
2117 2789 8.420222 ACCAATGTATCTTGTCACAAAAATTCA 58.580 29.630 0.00 0.00 0.00 2.57
2118 2790 9.258826 CCAATGTATCTTGTCACAAAAATTCAA 57.741 29.630 0.00 0.00 0.00 2.69
2141 2813 9.170734 TCAAATCAAAAATCAAAACAATGGTCA 57.829 25.926 0.00 0.00 0.00 4.02
2142 2814 9.784680 CAAATCAAAAATCAAAACAATGGTCAA 57.215 25.926 0.00 0.00 0.00 3.18
2144 2816 8.961294 ATCAAAAATCAAAACAATGGTCAAGA 57.039 26.923 0.00 0.00 0.00 3.02
2145 2817 8.961294 TCAAAAATCAAAACAATGGTCAAGAT 57.039 26.923 0.00 0.00 0.00 2.40
2148 2820 9.829507 AAAAATCAAAACAATGGTCAAGATACA 57.170 25.926 0.00 0.00 0.00 2.29
2149 2821 9.829507 AAAATCAAAACAATGGTCAAGATACAA 57.170 25.926 0.00 0.00 0.00 2.41
2150 2822 9.829507 AAATCAAAACAATGGTCAAGATACAAA 57.170 25.926 0.00 0.00 0.00 2.83
2151 2823 9.829507 AATCAAAACAATGGTCAAGATACAAAA 57.170 25.926 0.00 0.00 0.00 2.44
2152 2824 9.829507 ATCAAAACAATGGTCAAGATACAAAAA 57.170 25.926 0.00 0.00 0.00 1.94
2153 2825 9.829507 TCAAAACAATGGTCAAGATACAAAAAT 57.170 25.926 0.00 0.00 0.00 1.82
2154 2826 9.866936 CAAAACAATGGTCAAGATACAAAAATG 57.133 29.630 0.00 0.00 0.00 2.32
2155 2827 9.829507 AAAACAATGGTCAAGATACAAAAATGA 57.170 25.926 0.00 0.00 0.00 2.57
2156 2828 8.816640 AACAATGGTCAAGATACAAAAATGAC 57.183 30.769 0.00 0.00 39.65 3.06
2157 2829 7.950512 ACAATGGTCAAGATACAAAAATGACA 58.049 30.769 6.55 0.00 41.60 3.58
2158 2830 8.420222 ACAATGGTCAAGATACAAAAATGACAA 58.580 29.630 6.55 0.00 41.60 3.18
2159 2831 9.258826 CAATGGTCAAGATACAAAAATGACAAA 57.741 29.630 6.55 0.00 41.60 2.83
2162 2834 9.829507 TGGTCAAGATACAAAAATGACAAATTT 57.170 25.926 6.55 0.00 41.60 1.82
2166 2838 9.782028 CAAGATACAAAAATGACAAATTTGACG 57.218 29.630 24.64 7.21 37.46 4.35
2167 2839 9.528018 AAGATACAAAAATGACAAATTTGACGT 57.472 25.926 24.64 16.52 37.46 4.34
2168 2840 9.180678 AGATACAAAAATGACAAATTTGACGTC 57.819 29.630 24.64 9.11 37.46 4.34
2169 2841 6.582437 ACAAAAATGACAAATTTGACGTCC 57.418 33.333 24.64 8.35 37.46 4.79
2170 2842 6.102663 ACAAAAATGACAAATTTGACGTCCA 58.897 32.000 24.64 13.04 37.46 4.02
2171 2843 6.760770 ACAAAAATGACAAATTTGACGTCCAT 59.239 30.769 24.64 14.45 37.46 3.41
2172 2844 6.768029 AAAATGACAAATTTGACGTCCATG 57.232 33.333 24.64 7.29 0.00 3.66
2173 2845 5.452078 AATGACAAATTTGACGTCCATGT 57.548 34.783 24.64 10.44 0.00 3.21
2174 2846 4.221926 TGACAAATTTGACGTCCATGTG 57.778 40.909 24.64 12.64 0.00 3.21
2175 2847 2.979813 GACAAATTTGACGTCCATGTGC 59.020 45.455 24.64 3.91 0.00 4.57
2176 2848 2.622942 ACAAATTTGACGTCCATGTGCT 59.377 40.909 24.64 0.00 0.00 4.40
2177 2849 3.818210 ACAAATTTGACGTCCATGTGCTA 59.182 39.130 24.64 0.00 0.00 3.49
2178 2850 4.277174 ACAAATTTGACGTCCATGTGCTAA 59.723 37.500 24.64 0.00 0.00 3.09
2179 2851 5.048083 ACAAATTTGACGTCCATGTGCTAAT 60.048 36.000 24.64 0.00 0.00 1.73
2180 2852 4.621068 ATTTGACGTCCATGTGCTAATG 57.379 40.909 14.12 0.00 0.00 1.90
2182 2854 1.299541 GACGTCCATGTGCTAATGGG 58.700 55.000 15.55 5.90 46.17 4.00
2183 2855 0.748005 ACGTCCATGTGCTAATGGGC 60.748 55.000 15.55 13.58 46.89 5.36
2184 2856 2.419057 GTCCATGTGCTAATGGGCC 58.581 57.895 15.55 0.00 45.05 5.80
2185 2857 0.395586 GTCCATGTGCTAATGGGCCA 60.396 55.000 9.61 9.61 45.05 5.36
2186 2858 0.334335 TCCATGTGCTAATGGGCCAA 59.666 50.000 11.89 0.00 46.17 4.52
2187 2859 1.193323 CCATGTGCTAATGGGCCAAA 58.807 50.000 11.89 0.00 43.02 3.28
2188 2860 1.554160 CCATGTGCTAATGGGCCAAAA 59.446 47.619 11.89 0.00 43.02 2.44
2189 2861 2.620242 CATGTGCTAATGGGCCAAAAC 58.380 47.619 11.89 5.38 0.00 2.43
2190 2862 2.008242 TGTGCTAATGGGCCAAAACT 57.992 45.000 11.89 0.00 0.00 2.66
2191 2863 1.617850 TGTGCTAATGGGCCAAAACTG 59.382 47.619 11.89 0.24 0.00 3.16
2192 2864 1.892474 GTGCTAATGGGCCAAAACTGA 59.108 47.619 11.89 0.00 0.00 3.41
2193 2865 2.298729 GTGCTAATGGGCCAAAACTGAA 59.701 45.455 11.89 0.00 0.00 3.02
2194 2866 2.562298 TGCTAATGGGCCAAAACTGAAG 59.438 45.455 11.89 1.50 0.00 3.02
2195 2867 2.562738 GCTAATGGGCCAAAACTGAAGT 59.437 45.455 11.89 0.00 0.00 3.01
2196 2868 3.367395 GCTAATGGGCCAAAACTGAAGTC 60.367 47.826 11.89 0.00 0.00 3.01
2197 2869 1.632589 ATGGGCCAAAACTGAAGTCC 58.367 50.000 11.89 0.00 0.00 3.85
2198 2870 0.260230 TGGGCCAAAACTGAAGTCCA 59.740 50.000 2.13 0.00 0.00 4.02
2199 2871 1.342474 TGGGCCAAAACTGAAGTCCAA 60.342 47.619 2.13 0.00 0.00 3.53
2200 2872 1.068588 GGGCCAAAACTGAAGTCCAAC 59.931 52.381 4.39 0.00 0.00 3.77
2201 2873 2.031870 GGCCAAAACTGAAGTCCAACT 58.968 47.619 0.00 0.00 0.00 3.16
2202 2874 2.430694 GGCCAAAACTGAAGTCCAACTT 59.569 45.455 0.00 0.00 41.95 2.66
2218 2890 9.654663 AAGTCCAACTTCTGTTATGTACTATTC 57.345 33.333 0.00 0.00 31.77 1.75
2219 2891 8.812972 AGTCCAACTTCTGTTATGTACTATTCA 58.187 33.333 0.00 0.00 34.60 2.57
2220 2892 9.431887 GTCCAACTTCTGTTATGTACTATTCAA 57.568 33.333 0.00 0.00 34.60 2.69
2251 2923 9.906660 AAATTTGTTATTTTTGTATCTCGAGCA 57.093 25.926 7.81 0.00 0.00 4.26
2252 2924 9.906660 AATTTGTTATTTTTGTATCTCGAGCAA 57.093 25.926 7.81 3.53 0.00 3.91
2254 2926 8.894409 TTGTTATTTTTGTATCTCGAGCAATG 57.106 30.769 7.81 0.00 0.00 2.82
2255 2927 8.039603 TGTTATTTTTGTATCTCGAGCAATGT 57.960 30.769 7.81 0.00 0.00 2.71
2256 2928 8.511321 TGTTATTTTTGTATCTCGAGCAATGTT 58.489 29.630 7.81 0.00 0.00 2.71
2257 2929 9.341899 GTTATTTTTGTATCTCGAGCAATGTTT 57.658 29.630 7.81 0.00 0.00 2.83
2258 2930 9.554724 TTATTTTTGTATCTCGAGCAATGTTTC 57.445 29.630 7.81 0.00 0.00 2.78
2259 2931 4.840401 TTGTATCTCGAGCAATGTTTCG 57.160 40.909 7.81 3.56 38.13 3.46
2260 2932 4.104696 TGTATCTCGAGCAATGTTTCGA 57.895 40.909 7.81 10.47 42.91 3.71
2261 2933 4.490743 TGTATCTCGAGCAATGTTTCGAA 58.509 39.130 7.81 0.00 44.25 3.71
2262 2934 5.109210 TGTATCTCGAGCAATGTTTCGAAT 58.891 37.500 7.81 10.43 44.25 3.34
2263 2935 6.270064 TGTATCTCGAGCAATGTTTCGAATA 58.730 36.000 7.81 9.77 44.25 1.75
2264 2936 6.923508 TGTATCTCGAGCAATGTTTCGAATAT 59.076 34.615 7.81 10.52 44.25 1.28
2265 2937 6.851222 ATCTCGAGCAATGTTTCGAATATT 57.149 33.333 7.81 0.26 44.25 1.28
2266 2938 6.036246 TCTCGAGCAATGTTTCGAATATTG 57.964 37.500 21.87 21.87 44.25 1.90
2267 2939 5.810074 TCTCGAGCAATGTTTCGAATATTGA 59.190 36.000 26.74 13.17 44.25 2.57
2268 2940 6.479990 TCTCGAGCAATGTTTCGAATATTGAT 59.520 34.615 26.74 23.42 44.25 2.57
2269 2941 6.649436 TCGAGCAATGTTTCGAATATTGATC 58.351 36.000 26.99 26.99 45.75 2.92
2270 2942 6.479990 TCGAGCAATGTTTCGAATATTGATCT 59.520 34.615 30.02 21.47 46.49 2.75
2271 2943 7.651704 TCGAGCAATGTTTCGAATATTGATCTA 59.348 33.333 30.02 23.81 46.49 1.98
2272 2944 8.275632 CGAGCAATGTTTCGAATATTGATCTAA 58.724 33.333 30.02 4.24 46.49 2.10
2273 2945 9.935682 GAGCAATGTTTCGAATATTGATCTAAA 57.064 29.630 28.22 1.20 45.75 1.85
2308 2980 6.094719 ACATACATTCATGTTGTGTCAATGC 58.905 36.000 12.38 0.00 41.97 3.56
2309 2981 4.587584 ACATTCATGTTGTGTCAATGCA 57.412 36.364 0.00 0.00 37.90 3.96
2310 2982 4.300803 ACATTCATGTTGTGTCAATGCAC 58.699 39.130 0.00 1.80 37.90 4.57
2311 2983 4.038282 ACATTCATGTTGTGTCAATGCACT 59.962 37.500 0.00 0.00 37.90 4.40
2312 2984 5.241285 ACATTCATGTTGTGTCAATGCACTA 59.759 36.000 0.00 0.20 37.90 2.74
2313 2985 5.764487 TTCATGTTGTGTCAATGCACTAA 57.236 34.783 0.00 1.24 39.89 2.24
2314 2986 5.963176 TCATGTTGTGTCAATGCACTAAT 57.037 34.783 0.00 0.00 39.89 1.73
2315 2987 6.330004 TCATGTTGTGTCAATGCACTAATT 57.670 33.333 0.00 0.00 39.89 1.40
2316 2988 6.747125 TCATGTTGTGTCAATGCACTAATTT 58.253 32.000 0.00 0.00 39.89 1.82
2317 2989 7.208777 TCATGTTGTGTCAATGCACTAATTTT 58.791 30.769 0.00 0.00 39.89 1.82
2318 2990 7.710044 TCATGTTGTGTCAATGCACTAATTTTT 59.290 29.630 0.00 0.00 39.89 1.94
2362 3034 4.260194 TGTGCAACAGACGATCGG 57.740 55.556 20.98 4.02 45.67 4.18
2363 3035 1.365999 TGTGCAACAGACGATCGGT 59.634 52.632 20.98 4.74 45.67 4.69
2364 3036 0.943835 TGTGCAACAGACGATCGGTG 60.944 55.000 20.98 18.03 45.67 4.94
2365 3037 0.944311 GTGCAACAGACGATCGGTGT 60.944 55.000 20.98 18.70 36.32 4.16
2366 3038 0.599060 TGCAACAGACGATCGGTGTA 59.401 50.000 20.98 5.02 0.00 2.90
2367 3039 0.989890 GCAACAGACGATCGGTGTAC 59.010 55.000 20.98 13.49 0.00 2.90
2368 3040 1.625616 CAACAGACGATCGGTGTACC 58.374 55.000 20.98 1.20 0.00 3.34
2380 3052 3.846955 GTGTACCGGTAGCACCAAT 57.153 52.632 24.88 0.00 38.47 3.16
2381 3053 2.103537 GTGTACCGGTAGCACCAATT 57.896 50.000 24.88 0.00 38.47 2.32
2382 3054 1.735571 GTGTACCGGTAGCACCAATTG 59.264 52.381 24.88 0.00 38.47 2.32
2607 3279 3.786516 TGCATCCGAGTACAAATACGA 57.213 42.857 0.00 0.00 36.33 3.43
2608 3280 4.112716 TGCATCCGAGTACAAATACGAA 57.887 40.909 0.00 0.00 36.33 3.85
2609 3281 4.496360 TGCATCCGAGTACAAATACGAAA 58.504 39.130 0.00 0.00 36.33 3.46
2610 3282 5.113383 TGCATCCGAGTACAAATACGAAAT 58.887 37.500 0.00 0.00 36.33 2.17
2611 3283 5.006261 TGCATCCGAGTACAAATACGAAATG 59.994 40.000 0.00 0.00 36.33 2.32
2612 3284 5.432157 CATCCGAGTACAAATACGAAATGC 58.568 41.667 0.00 0.00 36.33 3.56
2613 3285 4.751060 TCCGAGTACAAATACGAAATGCT 58.249 39.130 0.00 0.00 36.33 3.79
2614 3286 4.565166 TCCGAGTACAAATACGAAATGCTG 59.435 41.667 0.00 0.00 36.33 4.41
2615 3287 4.565166 CCGAGTACAAATACGAAATGCTGA 59.435 41.667 0.00 0.00 36.33 4.26
2616 3288 5.481472 CGAGTACAAATACGAAATGCTGAC 58.519 41.667 0.00 0.00 36.33 3.51
2617 3289 5.288712 CGAGTACAAATACGAAATGCTGACT 59.711 40.000 0.00 0.00 36.33 3.41
2618 3290 6.471198 CGAGTACAAATACGAAATGCTGACTA 59.529 38.462 0.00 0.00 36.33 2.59
2619 3291 7.008901 CGAGTACAAATACGAAATGCTGACTAA 59.991 37.037 0.00 0.00 36.33 2.24
2620 3292 8.542497 AGTACAAATACGAAATGCTGACTAAA 57.458 30.769 0.00 0.00 36.33 1.85
2621 3293 9.162764 AGTACAAATACGAAATGCTGACTAAAT 57.837 29.630 0.00 0.00 36.33 1.40
2622 3294 9.769093 GTACAAATACGAAATGCTGACTAAATT 57.231 29.630 0.00 0.00 0.00 1.82
2623 3295 8.673626 ACAAATACGAAATGCTGACTAAATTG 57.326 30.769 0.00 0.00 0.00 2.32
2624 3296 8.511321 ACAAATACGAAATGCTGACTAAATTGA 58.489 29.630 0.00 0.00 0.00 2.57
2625 3297 9.003112 CAAATACGAAATGCTGACTAAATTGAG 57.997 33.333 0.00 0.00 0.00 3.02
2626 3298 8.492673 AATACGAAATGCTGACTAAATTGAGA 57.507 30.769 0.00 0.00 0.00 3.27
2627 3299 6.992063 ACGAAATGCTGACTAAATTGAGAT 57.008 33.333 0.00 0.00 0.00 2.75
2628 3300 6.779117 ACGAAATGCTGACTAAATTGAGATG 58.221 36.000 0.00 0.00 0.00 2.90
2629 3301 6.183360 ACGAAATGCTGACTAAATTGAGATGG 60.183 38.462 0.00 0.00 0.00 3.51
2630 3302 6.183360 CGAAATGCTGACTAAATTGAGATGGT 60.183 38.462 0.00 0.00 0.00 3.55
2631 3303 7.011389 CGAAATGCTGACTAAATTGAGATGGTA 59.989 37.037 0.00 0.00 0.00 3.25
2632 3304 8.579850 AAATGCTGACTAAATTGAGATGGTAA 57.420 30.769 0.00 0.00 0.00 2.85
2633 3305 8.579850 AATGCTGACTAAATTGAGATGGTAAA 57.420 30.769 0.00 0.00 0.00 2.01
2634 3306 7.994425 TGCTGACTAAATTGAGATGGTAAAA 57.006 32.000 0.00 0.00 0.00 1.52
2635 3307 8.579850 TGCTGACTAAATTGAGATGGTAAAAT 57.420 30.769 0.00 0.00 0.00 1.82
2636 3308 8.461222 TGCTGACTAAATTGAGATGGTAAAATG 58.539 33.333 0.00 0.00 0.00 2.32
2637 3309 8.462016 GCTGACTAAATTGAGATGGTAAAATGT 58.538 33.333 0.00 0.00 0.00 2.71
2638 3310 9.778993 CTGACTAAATTGAGATGGTAAAATGTG 57.221 33.333 0.00 0.00 0.00 3.21
2639 3311 8.243426 TGACTAAATTGAGATGGTAAAATGTGC 58.757 33.333 0.00 0.00 0.00 4.57
2640 3312 8.121305 ACTAAATTGAGATGGTAAAATGTGCA 57.879 30.769 0.00 0.00 0.00 4.57
2641 3313 8.584157 ACTAAATTGAGATGGTAAAATGTGCAA 58.416 29.630 0.00 0.00 0.00 4.08
2642 3314 7.894376 AAATTGAGATGGTAAAATGTGCAAG 57.106 32.000 0.00 0.00 0.00 4.01
2643 3315 6.594788 ATTGAGATGGTAAAATGTGCAAGT 57.405 33.333 0.00 0.00 0.00 3.16
2644 3316 5.375417 TGAGATGGTAAAATGTGCAAGTG 57.625 39.130 0.00 0.00 0.00 3.16
2645 3317 4.168760 GAGATGGTAAAATGTGCAAGTGC 58.831 43.478 0.00 0.00 42.50 4.40
2646 3318 3.828451 AGATGGTAAAATGTGCAAGTGCT 59.172 39.130 4.69 0.00 42.66 4.40
2647 3319 4.281688 AGATGGTAAAATGTGCAAGTGCTT 59.718 37.500 4.69 0.00 42.66 3.91
2648 3320 5.476599 AGATGGTAAAATGTGCAAGTGCTTA 59.523 36.000 4.69 0.00 42.66 3.09
2649 3321 5.119931 TGGTAAAATGTGCAAGTGCTTAG 57.880 39.130 4.69 0.00 42.66 2.18
2650 3322 4.022416 TGGTAAAATGTGCAAGTGCTTAGG 60.022 41.667 4.69 0.00 42.66 2.69
2651 3323 4.217550 GGTAAAATGTGCAAGTGCTTAGGA 59.782 41.667 4.69 0.00 42.66 2.94
2652 3324 4.935352 AAAATGTGCAAGTGCTTAGGAA 57.065 36.364 4.69 0.00 42.66 3.36
2653 3325 4.510038 AAATGTGCAAGTGCTTAGGAAG 57.490 40.909 4.69 0.00 42.66 3.46
2654 3326 2.928801 TGTGCAAGTGCTTAGGAAGA 57.071 45.000 4.69 0.00 42.66 2.87
2655 3327 3.423539 TGTGCAAGTGCTTAGGAAGAT 57.576 42.857 4.69 0.00 42.66 2.40
2656 3328 3.076621 TGTGCAAGTGCTTAGGAAGATG 58.923 45.455 4.69 0.00 42.66 2.90
2657 3329 3.244526 TGTGCAAGTGCTTAGGAAGATGA 60.245 43.478 4.69 0.00 42.66 2.92
2658 3330 3.753272 GTGCAAGTGCTTAGGAAGATGAA 59.247 43.478 4.69 0.00 42.66 2.57
2659 3331 3.753272 TGCAAGTGCTTAGGAAGATGAAC 59.247 43.478 4.69 0.00 42.66 3.18
2660 3332 3.753272 GCAAGTGCTTAGGAAGATGAACA 59.247 43.478 0.00 0.00 38.21 3.18
2661 3333 4.378874 GCAAGTGCTTAGGAAGATGAACAC 60.379 45.833 0.00 0.00 38.21 3.32
2662 3334 4.623932 AGTGCTTAGGAAGATGAACACA 57.376 40.909 0.00 0.00 0.00 3.72
2663 3335 5.171339 AGTGCTTAGGAAGATGAACACAT 57.829 39.130 0.00 0.00 0.00 3.21
2664 3336 5.564550 AGTGCTTAGGAAGATGAACACATT 58.435 37.500 0.00 0.00 0.00 2.71
2665 3337 6.006449 AGTGCTTAGGAAGATGAACACATTT 58.994 36.000 0.00 0.00 0.00 2.32
2666 3338 6.150140 AGTGCTTAGGAAGATGAACACATTTC 59.850 38.462 0.00 0.00 0.00 2.17
2667 3339 6.003326 TGCTTAGGAAGATGAACACATTTCA 58.997 36.000 0.00 0.00 0.00 2.69
2668 3340 6.489700 TGCTTAGGAAGATGAACACATTTCAA 59.510 34.615 0.00 0.00 31.55 2.69
2669 3341 7.014134 TGCTTAGGAAGATGAACACATTTCAAA 59.986 33.333 0.00 0.00 31.55 2.69
2670 3342 7.867403 GCTTAGGAAGATGAACACATTTCAAAA 59.133 33.333 0.00 0.00 31.55 2.44
2671 3343 9.918630 CTTAGGAAGATGAACACATTTCAAAAT 57.081 29.630 0.00 0.00 31.55 1.82
2674 3346 9.918630 AGGAAGATGAACACATTTCAAAATAAG 57.081 29.630 0.00 0.00 31.55 1.73
2675 3347 9.912634 GGAAGATGAACACATTTCAAAATAAGA 57.087 29.630 0.00 0.00 31.55 2.10
2705 3377 7.849322 AATAATTCCAAAAGTGGTGTTAGGT 57.151 32.000 0.00 0.00 46.11 3.08
2706 3378 5.784578 AATTCCAAAAGTGGTGTTAGGTC 57.215 39.130 0.00 0.00 46.11 3.85
2707 3379 3.935818 TCCAAAAGTGGTGTTAGGTCA 57.064 42.857 0.00 0.00 46.11 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.976636 ACTTCAGAAGCTAAATTGAGTAGC 57.023 37.500 10.33 0.17 43.61 3.58
15 16 9.296400 GAGTACTTCAGAAGCTAAATTGAGTAG 57.704 37.037 10.33 0.00 0.00 2.57
16 17 8.803235 TGAGTACTTCAGAAGCTAAATTGAGTA 58.197 33.333 10.33 0.00 0.00 2.59
17 18 7.671302 TGAGTACTTCAGAAGCTAAATTGAGT 58.329 34.615 10.33 0.00 0.00 3.41
18 19 8.715191 ATGAGTACTTCAGAAGCTAAATTGAG 57.285 34.615 10.33 0.00 39.68 3.02
19 20 7.489435 CGATGAGTACTTCAGAAGCTAAATTGA 59.511 37.037 10.33 0.00 39.68 2.57
20 21 7.276658 ACGATGAGTACTTCAGAAGCTAAATTG 59.723 37.037 10.33 4.98 39.68 2.32
21 22 7.324178 ACGATGAGTACTTCAGAAGCTAAATT 58.676 34.615 10.33 0.00 39.68 1.82
22 23 6.868622 ACGATGAGTACTTCAGAAGCTAAAT 58.131 36.000 10.33 0.00 39.68 1.40
23 24 6.268825 ACGATGAGTACTTCAGAAGCTAAA 57.731 37.500 10.33 0.00 39.68 1.85
24 25 5.899120 ACGATGAGTACTTCAGAAGCTAA 57.101 39.130 10.33 0.00 39.68 3.09
25 26 5.899120 AACGATGAGTACTTCAGAAGCTA 57.101 39.130 10.33 0.00 39.68 3.32
26 27 4.792521 AACGATGAGTACTTCAGAAGCT 57.207 40.909 10.33 0.00 39.68 3.74
27 28 6.094061 ACTAAACGATGAGTACTTCAGAAGC 58.906 40.000 10.33 0.00 39.68 3.86
28 29 8.522178 AAACTAAACGATGAGTACTTCAGAAG 57.478 34.615 8.77 8.77 39.68 2.85
29 30 8.139350 TGAAACTAAACGATGAGTACTTCAGAA 58.861 33.333 0.00 0.00 39.68 3.02
30 31 7.594015 GTGAAACTAAACGATGAGTACTTCAGA 59.406 37.037 0.00 0.00 39.68 3.27
31 32 7.409449 CGTGAAACTAAACGATGAGTACTTCAG 60.409 40.741 0.00 0.00 42.32 3.02
32 33 6.361481 CGTGAAACTAAACGATGAGTACTTCA 59.639 38.462 0.00 0.00 42.32 3.02
33 34 6.183359 CCGTGAAACTAAACGATGAGTACTTC 60.183 42.308 0.00 0.00 42.32 3.01
34 35 5.632347 CCGTGAAACTAAACGATGAGTACTT 59.368 40.000 0.00 0.00 42.32 2.24
35 36 5.048504 TCCGTGAAACTAAACGATGAGTACT 60.049 40.000 0.00 0.00 42.32 2.73
36 37 5.156355 TCCGTGAAACTAAACGATGAGTAC 58.844 41.667 0.00 0.00 42.32 2.73
37 38 5.375417 TCCGTGAAACTAAACGATGAGTA 57.625 39.130 0.00 0.00 42.32 2.59
38 39 4.247267 TCCGTGAAACTAAACGATGAGT 57.753 40.909 0.00 0.00 42.32 3.41
39 40 5.779806 AATCCGTGAAACTAAACGATGAG 57.220 39.130 0.00 0.00 42.32 2.90
40 41 7.837202 AATAATCCGTGAAACTAAACGATGA 57.163 32.000 0.00 0.00 42.32 2.92
71 72 4.089065 GCGTTACCGTACTTGACTTTGTAG 59.911 45.833 0.00 0.00 36.15 2.74
87 88 3.177249 GGCGAGTCGTGCGTTACC 61.177 66.667 15.08 0.54 0.00 2.85
108 109 1.012086 CCACATGAATCACAGAGCCG 58.988 55.000 0.00 0.00 0.00 5.52
113 117 0.813184 GGCCACCACATGAATCACAG 59.187 55.000 0.00 0.00 0.00 3.66
261 375 1.248486 GCTTCCCAGTTGACCCTTTC 58.752 55.000 0.00 0.00 0.00 2.62
297 411 6.477053 TGAATTTTCCCAAACATGACTTCA 57.523 33.333 0.00 0.00 0.00 3.02
314 428 5.782893 TGTTTGGACTTTCGGATGAATTT 57.217 34.783 0.00 0.00 33.20 1.82
358 473 7.850982 GTCTGTAACTGTTGAAATATATTGCCG 59.149 37.037 2.69 0.00 0.00 5.69
359 474 8.673711 TGTCTGTAACTGTTGAAATATATTGCC 58.326 33.333 2.69 0.00 0.00 4.52
381 884 6.334202 TCGCCAAAATTACAAAAACTTGTCT 58.666 32.000 0.00 0.00 36.44 3.41
382 885 6.474102 TCTCGCCAAAATTACAAAAACTTGTC 59.526 34.615 0.00 0.00 36.44 3.18
385 888 6.334202 TGTCTCGCCAAAATTACAAAAACTT 58.666 32.000 0.00 0.00 0.00 2.66
411 959 5.705609 AAATCCACTTTACACGCTTGAAT 57.294 34.783 0.00 0.00 0.00 2.57
416 964 4.134563 AGACAAAATCCACTTTACACGCT 58.865 39.130 0.00 0.00 0.00 5.07
420 968 7.789273 TCGTTAAGACAAAATCCACTTTACA 57.211 32.000 0.00 0.00 0.00 2.41
431 1015 7.308348 GGAATGACAGGATTCGTTAAGACAAAA 60.308 37.037 0.00 0.00 33.75 2.44
458 1042 5.710513 TGCATGCTGTTGTTTTTCTAGAT 57.289 34.783 20.33 0.00 0.00 1.98
470 1055 3.570975 TCAACTTGAAGATGCATGCTGTT 59.429 39.130 20.33 9.31 0.00 3.16
499 1085 3.487576 AAAAAGGCCAGTCACGTCA 57.512 47.368 5.01 0.00 0.00 4.35
516 1102 2.033675 GCCGACGAAAAGGAAAAGGAAA 59.966 45.455 0.00 0.00 0.00 3.13
517 1103 1.605232 GCCGACGAAAAGGAAAAGGAA 59.395 47.619 0.00 0.00 0.00 3.36
561 1148 0.708209 TACCACCCAGACCTAGCTGA 59.292 55.000 0.00 0.00 38.14 4.26
563 1150 0.688087 GCTACCACCCAGACCTAGCT 60.688 60.000 0.00 0.00 0.00 3.32
564 1151 0.976073 TGCTACCACCCAGACCTAGC 60.976 60.000 0.00 0.00 0.00 3.42
565 1152 1.115467 CTGCTACCACCCAGACCTAG 58.885 60.000 0.00 0.00 0.00 3.02
566 1153 0.976073 GCTGCTACCACCCAGACCTA 60.976 60.000 0.00 0.00 0.00 3.08
602 1189 1.457009 GGTAGCAGGAGGGAGTAGCG 61.457 65.000 0.00 0.00 0.00 4.26
616 1207 4.719369 CGCCGCGGATAGGGTAGC 62.719 72.222 33.48 8.97 0.00 3.58
653 1244 4.445545 GTGTTACGCAGCGCAGGC 62.446 66.667 16.61 12.61 40.37 4.85
712 1303 1.439679 GAGGGCACGTTTAAGGTCAG 58.560 55.000 0.00 0.00 0.00 3.51
714 1305 0.323957 AGGAGGGCACGTTTAAGGTC 59.676 55.000 0.00 0.00 0.00 3.85
743 1334 2.623416 GGCCATTAGGTTATTGCCTGAC 59.377 50.000 0.00 0.00 39.60 3.51
794 1389 1.506309 TTACAAGCGCCTGTGCTGTG 61.506 55.000 21.69 9.10 46.60 3.66
798 1393 1.083489 TGTATTACAAGCGCCTGTGC 58.917 50.000 21.69 9.39 0.00 4.57
799 1394 1.396996 GGTGTATTACAAGCGCCTGTG 59.603 52.381 21.69 11.66 0.00 3.66
801 1396 1.396996 GTGGTGTATTACAAGCGCCTG 59.603 52.381 2.29 3.24 34.19 4.85
802 1397 1.278127 AGTGGTGTATTACAAGCGCCT 59.722 47.619 2.29 0.00 34.19 5.52
804 1399 4.932268 TTAAGTGGTGTATTACAAGCGC 57.068 40.909 0.00 0.00 0.00 5.92
805 1400 6.903883 AGATTAAGTGGTGTATTACAAGCG 57.096 37.500 0.00 0.00 0.00 4.68
911 1544 2.978010 CTTGGTGGTGGTCCGTGC 60.978 66.667 0.00 0.00 36.30 5.34
923 1556 2.111043 CGTGGTGTGGAGCTTGGT 59.889 61.111 0.00 0.00 0.00 3.67
924 1557 1.669115 CTCGTGGTGTGGAGCTTGG 60.669 63.158 0.00 0.00 0.00 3.61
925 1558 3.957260 CTCGTGGTGTGGAGCTTG 58.043 61.111 0.00 0.00 0.00 4.01
929 1562 1.961277 GGTTGCTCGTGGTGTGGAG 60.961 63.158 0.00 0.00 0.00 3.86
930 1563 2.110213 GGTTGCTCGTGGTGTGGA 59.890 61.111 0.00 0.00 0.00 4.02
931 1564 1.961277 GAGGTTGCTCGTGGTGTGG 60.961 63.158 0.00 0.00 0.00 4.17
932 1565 2.310233 CGAGGTTGCTCGTGGTGTG 61.310 63.158 0.00 0.00 41.43 3.82
933 1566 2.029073 CGAGGTTGCTCGTGGTGT 59.971 61.111 0.00 0.00 41.43 4.16
994 1644 2.401766 GCCTCGCCAACATGGTCAG 61.402 63.158 0.00 0.00 40.46 3.51
1263 1929 4.736896 AACCGTCGAGCCGAAGCC 62.737 66.667 0.00 0.00 41.25 4.35
1455 2127 0.737367 ACATGTCGATGCACTCCACG 60.737 55.000 0.00 0.00 32.14 4.94
1666 2338 0.249911 GCAGGTGGTTTCGTCTCTGT 60.250 55.000 0.00 0.00 0.00 3.41
1667 2339 0.034059 AGCAGGTGGTTTCGTCTCTG 59.966 55.000 0.00 0.00 0.00 3.35
1668 2340 0.034059 CAGCAGGTGGTTTCGTCTCT 59.966 55.000 0.00 0.00 0.00 3.10
1751 2423 3.437395 GTGTATGGGTGACGTGCATAAAA 59.563 43.478 0.00 0.00 33.20 1.52
1752 2424 3.004171 GTGTATGGGTGACGTGCATAAA 58.996 45.455 0.00 0.00 33.20 1.40
1753 2425 2.028020 TGTGTATGGGTGACGTGCATAA 60.028 45.455 0.00 0.00 33.20 1.90
1754 2426 1.550976 TGTGTATGGGTGACGTGCATA 59.449 47.619 0.00 0.00 33.20 3.14
1755 2427 0.323302 TGTGTATGGGTGACGTGCAT 59.677 50.000 0.00 0.00 33.20 3.96
1846 2518 9.391006 TGTTTAATTTCTGTAGTGTCAAGTCTT 57.609 29.630 0.00 0.00 0.00 3.01
1882 2554 9.832445 AACTATTCCTACATCGTATTGTCAATT 57.168 29.630 2.79 0.00 0.00 2.32
1883 2555 9.477484 GAACTATTCCTACATCGTATTGTCAAT 57.523 33.333 3.06 3.06 0.00 2.57
1884 2556 8.692710 AGAACTATTCCTACATCGTATTGTCAA 58.307 33.333 0.00 0.00 0.00 3.18
1885 2557 8.234136 AGAACTATTCCTACATCGTATTGTCA 57.766 34.615 0.00 0.00 0.00 3.58
1886 2558 8.569641 AGAGAACTATTCCTACATCGTATTGTC 58.430 37.037 0.00 0.00 0.00 3.18
1887 2559 8.466617 AGAGAACTATTCCTACATCGTATTGT 57.533 34.615 0.00 0.00 0.00 2.71
1966 2638 8.053355 AGATACGTTCCCATCTAAAGGATTTTT 58.947 33.333 0.00 0.00 40.09 1.94
1967 2639 7.499232 CAGATACGTTCCCATCTAAAGGATTTT 59.501 37.037 0.00 0.00 40.09 1.82
1968 2640 6.992715 CAGATACGTTCCCATCTAAAGGATTT 59.007 38.462 0.00 0.00 43.42 2.17
1969 2641 6.464465 CCAGATACGTTCCCATCTAAAGGATT 60.464 42.308 0.00 0.00 31.27 3.01
1970 2642 5.012148 CCAGATACGTTCCCATCTAAAGGAT 59.988 44.000 0.00 0.00 34.51 3.24
1971 2643 4.344102 CCAGATACGTTCCCATCTAAAGGA 59.656 45.833 0.00 0.00 30.32 3.36
1972 2644 4.101119 ACCAGATACGTTCCCATCTAAAGG 59.899 45.833 0.00 0.00 30.32 3.11
1973 2645 5.050490 CACCAGATACGTTCCCATCTAAAG 58.950 45.833 0.00 0.00 30.32 1.85
1974 2646 4.682320 GCACCAGATACGTTCCCATCTAAA 60.682 45.833 0.00 0.00 30.32 1.85
1975 2647 3.181469 GCACCAGATACGTTCCCATCTAA 60.181 47.826 0.00 0.00 30.32 2.10
1976 2648 2.364324 GCACCAGATACGTTCCCATCTA 59.636 50.000 0.00 0.00 30.32 1.98
1977 2649 1.139058 GCACCAGATACGTTCCCATCT 59.861 52.381 0.00 0.00 31.58 2.90
1978 2650 1.134521 TGCACCAGATACGTTCCCATC 60.135 52.381 0.00 0.00 0.00 3.51
1979 2651 0.908910 TGCACCAGATACGTTCCCAT 59.091 50.000 0.00 0.00 0.00 4.00
1980 2652 0.036765 GTGCACCAGATACGTTCCCA 60.037 55.000 5.22 0.00 0.00 4.37
1981 2653 0.743345 GGTGCACCAGATACGTTCCC 60.743 60.000 31.23 0.00 35.64 3.97
1982 2654 0.036765 TGGTGCACCAGATACGTTCC 60.037 55.000 34.74 4.36 42.01 3.62
1983 2655 3.525619 TGGTGCACCAGATACGTTC 57.474 52.632 34.74 4.89 42.01 3.95
1992 2664 0.758310 TCAATTGCCTTGGTGCACCA 60.758 50.000 34.74 34.74 45.94 4.17
1993 2665 0.609662 ATCAATTGCCTTGGTGCACC 59.390 50.000 29.67 29.67 41.88 5.01
1994 2666 1.717194 CATCAATTGCCTTGGTGCAC 58.283 50.000 8.80 8.80 39.05 4.57
2005 2677 2.159338 GGTGCACTGGTAGCATCAATTG 60.159 50.000 17.98 0.00 44.79 2.32
2006 2678 2.094675 GGTGCACTGGTAGCATCAATT 58.905 47.619 17.98 0.00 44.79 2.32
2007 2679 1.755179 GGTGCACTGGTAGCATCAAT 58.245 50.000 17.98 0.00 44.79 2.57
2008 2680 0.673333 CGGTGCACTGGTAGCATCAA 60.673 55.000 18.43 0.00 43.17 2.57
2009 2681 1.079197 CGGTGCACTGGTAGCATCA 60.079 57.895 18.43 0.00 43.17 3.07
2010 2682 1.815421 CCGGTGCACTGGTAGCATC 60.815 63.158 32.99 5.23 44.79 3.91
2011 2683 2.268920 CCGGTGCACTGGTAGCAT 59.731 61.111 32.99 0.00 44.79 3.79
2012 2684 2.920384 TCCGGTGCACTGGTAGCA 60.920 61.111 37.57 20.58 43.01 3.49
2013 2685 2.434359 GTCCGGTGCACTGGTAGC 60.434 66.667 37.57 26.07 43.01 3.58
2014 2686 2.264794 GGTCCGGTGCACTGGTAG 59.735 66.667 37.57 17.88 43.01 3.18
2015 2687 3.315949 GGGTCCGGTGCACTGGTA 61.316 66.667 37.57 24.29 43.01 3.25
2027 2699 1.249407 TTTAATGTGCAACGGGGTCC 58.751 50.000 0.00 0.00 42.39 4.46
2028 2700 3.372660 TTTTTAATGTGCAACGGGGTC 57.627 42.857 0.00 0.00 42.39 4.46
2067 2739 7.540745 GGTGTTGTATCGATGCACTAAATTTTT 59.459 33.333 16.21 0.00 0.00 1.94
2068 2740 7.027161 GGTGTTGTATCGATGCACTAAATTTT 58.973 34.615 16.21 0.00 0.00 1.82
2069 2741 6.150307 TGGTGTTGTATCGATGCACTAAATTT 59.850 34.615 16.21 0.00 0.00 1.82
2070 2742 5.645929 TGGTGTTGTATCGATGCACTAAATT 59.354 36.000 16.21 0.00 0.00 1.82
2071 2743 5.182487 TGGTGTTGTATCGATGCACTAAAT 58.818 37.500 16.21 0.00 0.00 1.40
2072 2744 4.570930 TGGTGTTGTATCGATGCACTAAA 58.429 39.130 16.21 0.00 0.00 1.85
2073 2745 4.195225 TGGTGTTGTATCGATGCACTAA 57.805 40.909 16.21 0.00 0.00 2.24
2074 2746 3.878160 TGGTGTTGTATCGATGCACTA 57.122 42.857 16.21 10.22 0.00 2.74
2075 2747 2.760634 TGGTGTTGTATCGATGCACT 57.239 45.000 16.21 0.00 0.00 4.40
2076 2748 3.126858 ACATTGGTGTTGTATCGATGCAC 59.873 43.478 16.21 13.98 35.05 4.57
2077 2749 3.342719 ACATTGGTGTTGTATCGATGCA 58.657 40.909 12.50 12.50 35.05 3.96
2078 2750 5.673337 ATACATTGGTGTTGTATCGATGC 57.327 39.130 8.54 7.48 35.85 3.91
2084 2756 6.939730 TGTGACAAGATACATTGGTGTTGTAT 59.060 34.615 6.76 0.00 41.71 2.29
2085 2757 6.292150 TGTGACAAGATACATTGGTGTTGTA 58.708 36.000 6.76 0.00 39.77 2.41
2086 2758 5.129634 TGTGACAAGATACATTGGTGTTGT 58.870 37.500 6.56 6.56 39.77 3.32
2087 2759 5.687770 TGTGACAAGATACATTGGTGTTG 57.312 39.130 0.00 0.00 39.77 3.33
2088 2760 6.707440 TTTGTGACAAGATACATTGGTGTT 57.293 33.333 0.00 0.00 39.77 3.32
2089 2761 6.707440 TTTTGTGACAAGATACATTGGTGT 57.293 33.333 0.00 0.00 42.39 4.16
2090 2762 8.592105 AATTTTTGTGACAAGATACATTGGTG 57.408 30.769 0.00 0.00 34.36 4.17
2091 2763 8.420222 TGAATTTTTGTGACAAGATACATTGGT 58.580 29.630 0.00 0.00 34.36 3.67
2092 2764 8.815141 TGAATTTTTGTGACAAGATACATTGG 57.185 30.769 0.00 0.00 34.36 3.16
2115 2787 9.170734 TGACCATTGTTTTGATTTTTGATTTGA 57.829 25.926 0.00 0.00 0.00 2.69
2116 2788 9.784680 TTGACCATTGTTTTGATTTTTGATTTG 57.215 25.926 0.00 0.00 0.00 2.32
2118 2790 9.393512 TCTTGACCATTGTTTTGATTTTTGATT 57.606 25.926 0.00 0.00 0.00 2.57
2119 2791 8.961294 TCTTGACCATTGTTTTGATTTTTGAT 57.039 26.923 0.00 0.00 0.00 2.57
2120 2792 8.961294 ATCTTGACCATTGTTTTGATTTTTGA 57.039 26.923 0.00 0.00 0.00 2.69
2122 2794 9.829507 TGTATCTTGACCATTGTTTTGATTTTT 57.170 25.926 0.00 0.00 0.00 1.94
2123 2795 9.829507 TTGTATCTTGACCATTGTTTTGATTTT 57.170 25.926 0.00 0.00 0.00 1.82
2124 2796 9.829507 TTTGTATCTTGACCATTGTTTTGATTT 57.170 25.926 0.00 0.00 0.00 2.17
2125 2797 9.829507 TTTTGTATCTTGACCATTGTTTTGATT 57.170 25.926 0.00 0.00 0.00 2.57
2126 2798 9.829507 TTTTTGTATCTTGACCATTGTTTTGAT 57.170 25.926 0.00 0.00 0.00 2.57
2127 2799 9.829507 ATTTTTGTATCTTGACCATTGTTTTGA 57.170 25.926 0.00 0.00 0.00 2.69
2128 2800 9.866936 CATTTTTGTATCTTGACCATTGTTTTG 57.133 29.630 0.00 0.00 0.00 2.44
2129 2801 9.829507 TCATTTTTGTATCTTGACCATTGTTTT 57.170 25.926 0.00 0.00 0.00 2.43
2130 2802 9.260002 GTCATTTTTGTATCTTGACCATTGTTT 57.740 29.630 0.00 0.00 32.47 2.83
2131 2803 8.420222 TGTCATTTTTGTATCTTGACCATTGTT 58.580 29.630 0.00 0.00 36.68 2.83
2132 2804 7.950512 TGTCATTTTTGTATCTTGACCATTGT 58.049 30.769 0.00 0.00 36.68 2.71
2133 2805 8.815141 TTGTCATTTTTGTATCTTGACCATTG 57.185 30.769 0.00 0.00 36.68 2.82
2136 2808 9.829507 AAATTTGTCATTTTTGTATCTTGACCA 57.170 25.926 0.00 0.00 36.68 4.02
2140 2812 9.782028 CGTCAAATTTGTCATTTTTGTATCTTG 57.218 29.630 17.47 0.00 33.24 3.02
2141 2813 9.528018 ACGTCAAATTTGTCATTTTTGTATCTT 57.472 25.926 17.47 0.00 33.24 2.40
2142 2814 9.180678 GACGTCAAATTTGTCATTTTTGTATCT 57.819 29.630 17.47 0.00 33.24 1.98
2143 2815 8.424731 GGACGTCAAATTTGTCATTTTTGTATC 58.575 33.333 18.91 2.28 34.32 2.24
2144 2816 7.923344 TGGACGTCAAATTTGTCATTTTTGTAT 59.077 29.630 18.91 0.00 34.32 2.29
2145 2817 7.258441 TGGACGTCAAATTTGTCATTTTTGTA 58.742 30.769 18.91 0.00 34.32 2.41
2146 2818 6.102663 TGGACGTCAAATTTGTCATTTTTGT 58.897 32.000 18.91 4.85 34.32 2.83
2147 2819 6.580963 TGGACGTCAAATTTGTCATTTTTG 57.419 33.333 18.91 1.85 34.32 2.44
2148 2820 6.760770 ACATGGACGTCAAATTTGTCATTTTT 59.239 30.769 18.91 0.00 34.32 1.94
2149 2821 6.200665 CACATGGACGTCAAATTTGTCATTTT 59.799 34.615 18.91 0.00 34.32 1.82
2150 2822 5.691305 CACATGGACGTCAAATTTGTCATTT 59.309 36.000 18.91 0.00 34.32 2.32
2151 2823 5.221880 CACATGGACGTCAAATTTGTCATT 58.778 37.500 18.91 2.52 34.32 2.57
2152 2824 4.797471 CACATGGACGTCAAATTTGTCAT 58.203 39.130 18.91 5.88 34.32 3.06
2153 2825 3.549827 GCACATGGACGTCAAATTTGTCA 60.550 43.478 18.91 3.48 34.32 3.58
2154 2826 2.979813 GCACATGGACGTCAAATTTGTC 59.020 45.455 18.91 11.34 0.00 3.18
2155 2827 2.622942 AGCACATGGACGTCAAATTTGT 59.377 40.909 18.91 4.75 0.00 2.83
2156 2828 3.287312 AGCACATGGACGTCAAATTTG 57.713 42.857 18.91 12.15 0.00 2.32
2157 2829 5.401550 CATTAGCACATGGACGTCAAATTT 58.598 37.500 18.91 0.45 0.00 1.82
2158 2830 4.142403 CCATTAGCACATGGACGTCAAATT 60.142 41.667 18.91 0.00 46.18 1.82
2159 2831 3.378112 CCATTAGCACATGGACGTCAAAT 59.622 43.478 18.91 7.55 46.18 2.32
2160 2832 2.746904 CCATTAGCACATGGACGTCAAA 59.253 45.455 18.91 5.15 46.18 2.69
2161 2833 2.355197 CCATTAGCACATGGACGTCAA 58.645 47.619 18.91 6.46 46.18 3.18
2162 2834 1.406751 CCCATTAGCACATGGACGTCA 60.407 52.381 18.91 3.91 46.18 4.35
2163 2835 1.299541 CCCATTAGCACATGGACGTC 58.700 55.000 14.36 7.13 46.18 4.34
2164 2836 0.748005 GCCCATTAGCACATGGACGT 60.748 55.000 14.36 0.00 46.18 4.34
2165 2837 1.447317 GGCCCATTAGCACATGGACG 61.447 60.000 14.36 1.90 46.18 4.79
2166 2838 0.395586 TGGCCCATTAGCACATGGAC 60.396 55.000 14.36 4.12 46.18 4.02
2167 2839 0.334335 TTGGCCCATTAGCACATGGA 59.666 50.000 14.36 0.00 46.18 3.41
2168 2840 1.193323 TTTGGCCCATTAGCACATGG 58.807 50.000 0.00 7.12 43.26 3.66
2169 2841 2.234414 AGTTTTGGCCCATTAGCACATG 59.766 45.455 0.00 0.00 0.00 3.21
2170 2842 2.234414 CAGTTTTGGCCCATTAGCACAT 59.766 45.455 0.00 0.00 0.00 3.21
2171 2843 1.617850 CAGTTTTGGCCCATTAGCACA 59.382 47.619 0.00 0.00 0.00 4.57
2172 2844 1.892474 TCAGTTTTGGCCCATTAGCAC 59.108 47.619 0.00 0.00 0.00 4.40
2173 2845 2.300956 TCAGTTTTGGCCCATTAGCA 57.699 45.000 0.00 0.00 0.00 3.49
2174 2846 2.562738 ACTTCAGTTTTGGCCCATTAGC 59.437 45.455 0.00 0.00 0.00 3.09
2175 2847 3.193479 GGACTTCAGTTTTGGCCCATTAG 59.807 47.826 0.00 0.00 0.00 1.73
2176 2848 3.161866 GGACTTCAGTTTTGGCCCATTA 58.838 45.455 0.00 0.00 0.00 1.90
2177 2849 1.970640 GGACTTCAGTTTTGGCCCATT 59.029 47.619 0.00 0.00 0.00 3.16
2178 2850 1.133199 TGGACTTCAGTTTTGGCCCAT 60.133 47.619 0.00 0.00 0.00 4.00
2179 2851 0.260230 TGGACTTCAGTTTTGGCCCA 59.740 50.000 0.00 0.00 0.00 5.36
2180 2852 1.068588 GTTGGACTTCAGTTTTGGCCC 59.931 52.381 0.00 0.00 0.00 5.80
2181 2853 2.031870 AGTTGGACTTCAGTTTTGGCC 58.968 47.619 0.00 0.00 0.00 5.36
2182 2854 3.801114 AAGTTGGACTTCAGTTTTGGC 57.199 42.857 0.00 0.00 31.77 4.52
2192 2864 9.654663 GAATAGTACATAACAGAAGTTGGACTT 57.345 33.333 0.00 0.00 41.95 3.01
2193 2865 8.812972 TGAATAGTACATAACAGAAGTTGGACT 58.187 33.333 0.00 0.00 38.69 3.85
2194 2866 8.997621 TGAATAGTACATAACAGAAGTTGGAC 57.002 34.615 0.00 0.00 38.69 4.02
2225 2897 9.906660 TGCTCGAGATACAAAAATAACAAATTT 57.093 25.926 18.75 0.00 0.00 1.82
2226 2898 9.906660 TTGCTCGAGATACAAAAATAACAAATT 57.093 25.926 18.75 0.00 0.00 1.82
2228 2900 9.340695 CATTGCTCGAGATACAAAAATAACAAA 57.659 29.630 18.75 0.00 0.00 2.83
2229 2901 8.511321 ACATTGCTCGAGATACAAAAATAACAA 58.489 29.630 18.75 6.18 0.00 2.83
2230 2902 8.039603 ACATTGCTCGAGATACAAAAATAACA 57.960 30.769 18.75 0.00 0.00 2.41
2231 2903 8.895932 AACATTGCTCGAGATACAAAAATAAC 57.104 30.769 18.75 0.00 0.00 1.89
2232 2904 9.554724 GAAACATTGCTCGAGATACAAAAATAA 57.445 29.630 18.75 0.00 0.00 1.40
2233 2905 7.902917 CGAAACATTGCTCGAGATACAAAAATA 59.097 33.333 18.75 0.00 37.23 1.40
2234 2906 6.742718 CGAAACATTGCTCGAGATACAAAAAT 59.257 34.615 18.75 0.84 37.23 1.82
2235 2907 6.073494 TCGAAACATTGCTCGAGATACAAAAA 60.073 34.615 18.75 0.00 39.07 1.94
2236 2908 5.407084 TCGAAACATTGCTCGAGATACAAAA 59.593 36.000 18.75 0.13 39.07 2.44
2237 2909 4.926832 TCGAAACATTGCTCGAGATACAAA 59.073 37.500 18.75 2.00 39.07 2.83
2238 2910 4.490743 TCGAAACATTGCTCGAGATACAA 58.509 39.130 18.75 11.56 39.07 2.41
2239 2911 4.104696 TCGAAACATTGCTCGAGATACA 57.895 40.909 18.75 1.12 39.07 2.29
2240 2912 5.643339 ATTCGAAACATTGCTCGAGATAC 57.357 39.130 18.75 0.00 44.25 2.24
2241 2913 7.651704 TCAATATTCGAAACATTGCTCGAGATA 59.348 33.333 18.75 2.54 44.25 1.98
2242 2914 6.479990 TCAATATTCGAAACATTGCTCGAGAT 59.520 34.615 18.75 0.00 44.25 2.75
2243 2915 5.810074 TCAATATTCGAAACATTGCTCGAGA 59.190 36.000 18.75 0.00 44.25 4.04
2244 2916 6.036246 TCAATATTCGAAACATTGCTCGAG 57.964 37.500 21.98 8.45 44.25 4.04
2245 2917 6.479990 AGATCAATATTCGAAACATTGCTCGA 59.520 34.615 21.98 7.21 42.05 4.04
2246 2918 6.653183 AGATCAATATTCGAAACATTGCTCG 58.347 36.000 21.98 3.07 32.66 5.03
2247 2919 9.935682 TTTAGATCAATATTCGAAACATTGCTC 57.064 29.630 21.98 21.35 31.21 4.26
2284 2956 6.094719 GCATTGACACAACATGAATGTATGT 58.905 36.000 0.00 11.19 42.82 2.29
2285 2957 6.034150 GTGCATTGACACAACATGAATGTATG 59.966 38.462 0.00 6.18 40.80 2.39
2286 2958 6.071784 AGTGCATTGACACAACATGAATGTAT 60.072 34.615 0.00 0.00 43.23 2.29
2287 2959 5.241285 AGTGCATTGACACAACATGAATGTA 59.759 36.000 0.00 0.00 43.23 2.29
2288 2960 4.038282 AGTGCATTGACACAACATGAATGT 59.962 37.500 0.00 0.82 43.23 2.71
2289 2961 4.552355 AGTGCATTGACACAACATGAATG 58.448 39.130 0.00 0.09 43.23 2.67
2290 2962 4.859304 AGTGCATTGACACAACATGAAT 57.141 36.364 0.00 0.00 43.23 2.57
2291 2963 5.764487 TTAGTGCATTGACACAACATGAA 57.236 34.783 0.00 0.00 43.23 2.57
2292 2964 5.963176 ATTAGTGCATTGACACAACATGA 57.037 34.783 0.00 0.00 43.23 3.07
2293 2965 7.410800 AAAATTAGTGCATTGACACAACATG 57.589 32.000 11.85 0.00 43.23 3.21
2338 3010 5.143660 CGATCGTCTGTTGCACATTAAAAA 58.856 37.500 7.03 0.00 0.00 1.94
2339 3011 4.377943 CCGATCGTCTGTTGCACATTAAAA 60.378 41.667 15.09 0.00 0.00 1.52
2340 3012 3.124466 CCGATCGTCTGTTGCACATTAAA 59.876 43.478 15.09 0.00 0.00 1.52
2341 3013 2.670905 CCGATCGTCTGTTGCACATTAA 59.329 45.455 15.09 0.00 0.00 1.40
2342 3014 2.267426 CCGATCGTCTGTTGCACATTA 58.733 47.619 15.09 0.00 0.00 1.90
2343 3015 1.078709 CCGATCGTCTGTTGCACATT 58.921 50.000 15.09 0.00 0.00 2.71
2344 3016 0.037326 ACCGATCGTCTGTTGCACAT 60.037 50.000 15.09 0.00 0.00 3.21
2345 3017 0.943835 CACCGATCGTCTGTTGCACA 60.944 55.000 15.09 0.00 0.00 4.57
2346 3018 0.944311 ACACCGATCGTCTGTTGCAC 60.944 55.000 15.09 0.00 0.00 4.57
2347 3019 0.599060 TACACCGATCGTCTGTTGCA 59.401 50.000 17.81 1.65 0.00 4.08
2348 3020 0.989890 GTACACCGATCGTCTGTTGC 59.010 55.000 17.81 9.91 0.00 4.17
2349 3021 1.625616 GGTACACCGATCGTCTGTTG 58.374 55.000 17.81 8.22 0.00 3.33
2362 3034 1.735571 CAATTGGTGCTACCGGTACAC 59.264 52.381 26.21 26.21 42.58 2.90
2363 3035 2.102070 CAATTGGTGCTACCGGTACA 57.898 50.000 11.16 11.30 42.58 2.90
2587 3259 3.786516 TCGTATTTGTACTCGGATGCA 57.213 42.857 0.00 0.00 0.00 3.96
2588 3260 5.432157 CATTTCGTATTTGTACTCGGATGC 58.568 41.667 0.00 0.00 0.00 3.91
2589 3261 5.234329 AGCATTTCGTATTTGTACTCGGATG 59.766 40.000 0.00 0.00 0.00 3.51
2590 3262 5.234329 CAGCATTTCGTATTTGTACTCGGAT 59.766 40.000 0.00 0.00 0.00 4.18
2591 3263 4.565166 CAGCATTTCGTATTTGTACTCGGA 59.435 41.667 0.00 0.00 0.00 4.55
2592 3264 4.565166 TCAGCATTTCGTATTTGTACTCGG 59.435 41.667 0.00 0.00 0.00 4.63
2593 3265 5.288712 AGTCAGCATTTCGTATTTGTACTCG 59.711 40.000 0.00 0.00 0.00 4.18
2594 3266 6.648725 AGTCAGCATTTCGTATTTGTACTC 57.351 37.500 0.00 0.00 0.00 2.59
2595 3267 8.542497 TTTAGTCAGCATTTCGTATTTGTACT 57.458 30.769 0.00 0.00 0.00 2.73
2596 3268 9.769093 AATTTAGTCAGCATTTCGTATTTGTAC 57.231 29.630 0.00 0.00 0.00 2.90
2597 3269 9.767684 CAATTTAGTCAGCATTTCGTATTTGTA 57.232 29.630 0.00 0.00 0.00 2.41
2598 3270 8.511321 TCAATTTAGTCAGCATTTCGTATTTGT 58.489 29.630 0.00 0.00 0.00 2.83
2599 3271 8.894409 TCAATTTAGTCAGCATTTCGTATTTG 57.106 30.769 0.00 0.00 0.00 2.32
2600 3272 8.946085 TCTCAATTTAGTCAGCATTTCGTATTT 58.054 29.630 0.00 0.00 0.00 1.40
2601 3273 8.492673 TCTCAATTTAGTCAGCATTTCGTATT 57.507 30.769 0.00 0.00 0.00 1.89
2602 3274 8.554528 CATCTCAATTTAGTCAGCATTTCGTAT 58.445 33.333 0.00 0.00 0.00 3.06
2603 3275 7.011389 CCATCTCAATTTAGTCAGCATTTCGTA 59.989 37.037 0.00 0.00 0.00 3.43
2604 3276 6.183360 CCATCTCAATTTAGTCAGCATTTCGT 60.183 38.462 0.00 0.00 0.00 3.85
2605 3277 6.183360 ACCATCTCAATTTAGTCAGCATTTCG 60.183 38.462 0.00 0.00 0.00 3.46
2606 3278 7.093322 ACCATCTCAATTTAGTCAGCATTTC 57.907 36.000 0.00 0.00 0.00 2.17
2607 3279 8.579850 TTACCATCTCAATTTAGTCAGCATTT 57.420 30.769 0.00 0.00 0.00 2.32
2608 3280 8.579850 TTTACCATCTCAATTTAGTCAGCATT 57.420 30.769 0.00 0.00 0.00 3.56
2609 3281 8.579850 TTTTACCATCTCAATTTAGTCAGCAT 57.420 30.769 0.00 0.00 0.00 3.79
2610 3282 7.994425 TTTTACCATCTCAATTTAGTCAGCA 57.006 32.000 0.00 0.00 0.00 4.41
2611 3283 8.462016 ACATTTTACCATCTCAATTTAGTCAGC 58.538 33.333 0.00 0.00 0.00 4.26
2612 3284 9.778993 CACATTTTACCATCTCAATTTAGTCAG 57.221 33.333 0.00 0.00 0.00 3.51
2613 3285 8.243426 GCACATTTTACCATCTCAATTTAGTCA 58.757 33.333 0.00 0.00 0.00 3.41
2614 3286 8.243426 TGCACATTTTACCATCTCAATTTAGTC 58.757 33.333 0.00 0.00 0.00 2.59
2615 3287 8.121305 TGCACATTTTACCATCTCAATTTAGT 57.879 30.769 0.00 0.00 0.00 2.24
2616 3288 8.984891 TTGCACATTTTACCATCTCAATTTAG 57.015 30.769 0.00 0.00 0.00 1.85
2617 3289 8.584157 ACTTGCACATTTTACCATCTCAATTTA 58.416 29.630 0.00 0.00 0.00 1.40
2618 3290 7.385752 CACTTGCACATTTTACCATCTCAATTT 59.614 33.333 0.00 0.00 0.00 1.82
2619 3291 6.869913 CACTTGCACATTTTACCATCTCAATT 59.130 34.615 0.00 0.00 0.00 2.32
2620 3292 6.392354 CACTTGCACATTTTACCATCTCAAT 58.608 36.000 0.00 0.00 0.00 2.57
2621 3293 5.771469 CACTTGCACATTTTACCATCTCAA 58.229 37.500 0.00 0.00 0.00 3.02
2622 3294 4.321156 GCACTTGCACATTTTACCATCTCA 60.321 41.667 0.00 0.00 41.59 3.27
2623 3295 4.082571 AGCACTTGCACATTTTACCATCTC 60.083 41.667 3.62 0.00 45.16 2.75
2624 3296 3.828451 AGCACTTGCACATTTTACCATCT 59.172 39.130 3.62 0.00 45.16 2.90
2625 3297 4.178545 AGCACTTGCACATTTTACCATC 57.821 40.909 3.62 0.00 45.16 3.51
2626 3298 4.605640 AAGCACTTGCACATTTTACCAT 57.394 36.364 3.62 0.00 45.16 3.55
2627 3299 4.022416 CCTAAGCACTTGCACATTTTACCA 60.022 41.667 3.62 0.00 45.16 3.25
2628 3300 4.217550 TCCTAAGCACTTGCACATTTTACC 59.782 41.667 3.62 0.00 45.16 2.85
2629 3301 5.371115 TCCTAAGCACTTGCACATTTTAC 57.629 39.130 3.62 0.00 45.16 2.01
2630 3302 5.767665 TCTTCCTAAGCACTTGCACATTTTA 59.232 36.000 3.62 0.00 45.16 1.52
2631 3303 4.584325 TCTTCCTAAGCACTTGCACATTTT 59.416 37.500 3.62 0.00 45.16 1.82
2632 3304 4.144297 TCTTCCTAAGCACTTGCACATTT 58.856 39.130 3.62 0.00 45.16 2.32
2633 3305 3.754965 TCTTCCTAAGCACTTGCACATT 58.245 40.909 3.62 0.00 45.16 2.71
2634 3306 3.423539 TCTTCCTAAGCACTTGCACAT 57.576 42.857 3.62 0.00 45.16 3.21
2635 3307 2.928801 TCTTCCTAAGCACTTGCACA 57.071 45.000 3.62 0.00 45.16 4.57
2636 3308 3.338249 TCATCTTCCTAAGCACTTGCAC 58.662 45.455 3.62 0.00 45.16 4.57
2637 3309 3.701205 TCATCTTCCTAAGCACTTGCA 57.299 42.857 3.62 0.00 45.16 4.08
2638 3310 3.753272 TGTTCATCTTCCTAAGCACTTGC 59.247 43.478 0.00 0.00 42.49 4.01
2639 3311 4.756642 TGTGTTCATCTTCCTAAGCACTTG 59.243 41.667 0.00 0.00 0.00 3.16
2640 3312 4.973168 TGTGTTCATCTTCCTAAGCACTT 58.027 39.130 0.00 0.00 0.00 3.16
2641 3313 4.623932 TGTGTTCATCTTCCTAAGCACT 57.376 40.909 0.00 0.00 0.00 4.40
2642 3314 5.886960 AATGTGTTCATCTTCCTAAGCAC 57.113 39.130 0.00 0.00 32.56 4.40
2643 3315 6.003326 TGAAATGTGTTCATCTTCCTAAGCA 58.997 36.000 0.00 0.00 32.56 3.91
2644 3316 6.500684 TGAAATGTGTTCATCTTCCTAAGC 57.499 37.500 0.00 0.00 32.56 3.09
2645 3317 9.918630 ATTTTGAAATGTGTTCATCTTCCTAAG 57.081 29.630 0.00 0.00 32.56 2.18
2648 3320 9.918630 CTTATTTTGAAATGTGTTCATCTTCCT 57.081 29.630 0.00 0.00 32.56 3.36
2649 3321 9.912634 TCTTATTTTGAAATGTGTTCATCTTCC 57.087 29.630 0.00 0.00 32.56 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.