Multiple sequence alignment - TraesCS5A01G271200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G271200 chr5A 100.000 3679 0 0 1 3679 481896166 481892488 0.000000e+00 6794
1 TraesCS5A01G271200 chr5D 93.493 2213 101 21 1 2203 381028793 381026614 0.000000e+00 3249
2 TraesCS5A01G271200 chr5D 96.394 1248 40 3 2432 3679 381026158 381024916 0.000000e+00 2050
3 TraesCS5A01G271200 chr5D 95.046 323 13 1 2113 2435 381026615 381026296 4.240000e-139 505
4 TraesCS5A01G271200 chr5B 92.775 2007 101 19 1 1981 457127634 457125646 0.000000e+00 2863
5 TraesCS5A01G271200 chr5B 89.001 1682 121 35 2045 3679 457125649 457123985 0.000000e+00 2023


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G271200 chr5A 481892488 481896166 3678 True 6794.000000 6794 100.000000 1 3679 1 chr5A.!!$R1 3678
1 TraesCS5A01G271200 chr5D 381024916 381028793 3877 True 1934.666667 3249 94.977667 1 3679 3 chr5D.!!$R1 3678
2 TraesCS5A01G271200 chr5B 457123985 457127634 3649 True 2443.000000 2863 90.888000 1 3679 2 chr5B.!!$R1 3678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 954 1.382522 CGATCACAGAAATGGGGTGG 58.617 55.0 0.0 0.0 33.45 4.61 F
2297 2407 0.180406 ACGAAACACCTGAGGCAAGT 59.820 50.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2564 2818 1.171308 CCTGGAGCTTGGATGTGTTG 58.829 55.000 0.0 0.0 0.0 3.33 R
3577 3870 1.137086 CACTACTATGCCAAGGACGCT 59.863 52.381 0.0 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 191 4.394712 CTGGACGGCGCCTTCCTT 62.395 66.667 41.37 16.11 35.64 3.36
490 494 3.050275 GTGTTCACCAGCTCGGCC 61.050 66.667 0.00 0.00 39.03 6.13
628 632 1.522580 GAGGCTCGGCATTGAGGTC 60.523 63.158 0.00 0.00 36.47 3.85
743 747 4.218417 GGTTTAGTGCTGGTTCACATTGAT 59.782 41.667 0.00 0.00 39.35 2.57
745 749 6.095440 GGTTTAGTGCTGGTTCACATTGATAT 59.905 38.462 0.00 0.00 39.35 1.63
746 750 6.682423 TTAGTGCTGGTTCACATTGATATG 57.318 37.500 0.00 0.00 39.35 1.78
747 751 4.847198 AGTGCTGGTTCACATTGATATGA 58.153 39.130 0.00 0.00 39.35 2.15
748 752 5.443283 AGTGCTGGTTCACATTGATATGAT 58.557 37.500 0.00 0.00 39.35 2.45
749 753 6.594744 AGTGCTGGTTCACATTGATATGATA 58.405 36.000 0.00 0.00 39.35 2.15
750 754 6.709397 AGTGCTGGTTCACATTGATATGATAG 59.291 38.462 0.00 0.00 39.35 2.08
751 755 5.999600 TGCTGGTTCACATTGATATGATAGG 59.000 40.000 0.00 0.00 35.65 2.57
752 756 5.106396 GCTGGTTCACATTGATATGATAGGC 60.106 44.000 0.00 0.00 35.65 3.93
753 757 4.996758 TGGTTCACATTGATATGATAGGCG 59.003 41.667 0.00 0.00 35.65 5.52
754 758 5.221621 TGGTTCACATTGATATGATAGGCGA 60.222 40.000 0.00 0.00 35.65 5.54
755 759 5.700832 GGTTCACATTGATATGATAGGCGAA 59.299 40.000 0.00 0.00 35.65 4.70
756 760 6.372659 GGTTCACATTGATATGATAGGCGAAT 59.627 38.462 0.00 0.00 35.65 3.34
791 795 6.737254 AACTTTCTTTCTTCGAGTCACAAA 57.263 33.333 0.00 0.00 0.00 2.83
794 798 7.189512 ACTTTCTTTCTTCGAGTCACAAATTG 58.810 34.615 0.00 0.00 0.00 2.32
873 877 4.896482 ACCAACCTGTCACCTAGATATCTC 59.104 45.833 8.95 0.00 0.00 2.75
914 918 3.640967 TGCATTCTACCAACCAAGCTTTT 59.359 39.130 0.00 0.00 0.00 2.27
931 935 7.328493 CCAAGCTTTTTACCTGTTAATAACTGC 59.672 37.037 0.00 0.00 0.00 4.40
939 943 4.870426 ACCTGTTAATAACTGCGATCACAG 59.130 41.667 9.21 9.21 43.59 3.66
950 954 1.382522 CGATCACAGAAATGGGGTGG 58.617 55.000 0.00 0.00 33.45 4.61
981 985 6.783708 TTCTTGATCTTCCTCCTCTAGAAC 57.216 41.667 0.00 0.00 29.81 3.01
986 990 3.354467 TCTTCCTCCTCTAGAACGTTCC 58.646 50.000 24.22 7.13 0.00 3.62
1019 1023 6.238842 GCTTATATGAGAAGCTGGATTTGCAA 60.239 38.462 0.00 0.00 44.83 4.08
1052 1056 1.340248 TCACCACTTCCAGTTCGAGAC 59.660 52.381 0.00 0.00 0.00 3.36
1066 1070 1.203287 TCGAGACAATGGTGAGCTCAG 59.797 52.381 18.89 7.58 32.73 3.35
1170 1174 4.256983 TGTGATAGGGACAGTCAGAGAT 57.743 45.455 2.17 0.00 0.00 2.75
1178 1182 3.571590 GGACAGTCAGAGATCCAGGTAT 58.428 50.000 2.17 0.00 0.00 2.73
1185 1190 5.365314 AGTCAGAGATCCAGGTATTCCTTTC 59.635 44.000 0.00 0.00 43.07 2.62
1192 1197 5.552870 TCCAGGTATTCCTTTCTAGCATC 57.447 43.478 0.00 0.00 43.07 3.91
1209 1214 5.579753 AGCATCCCTCTTGATGACATTAT 57.420 39.130 5.26 0.00 43.94 1.28
1420 1425 2.165167 CACATTGCATCACCTGTCCTT 58.835 47.619 0.00 0.00 0.00 3.36
1423 1428 0.770499 TTGCATCACCTGTCCTTGGA 59.230 50.000 0.00 0.00 0.00 3.53
1432 1437 4.043310 TCACCTGTCCTTGGAAAATCTGAT 59.957 41.667 0.00 0.00 0.00 2.90
1465 1470 1.801771 GCATGCTGCATTTGCTTCAAA 59.198 42.857 18.29 0.00 44.26 2.69
1467 1472 1.868469 TGCTGCATTTGCTTCAAACC 58.132 45.000 0.00 0.00 42.66 3.27
1471 1476 2.036217 CTGCATTTGCTTCAAACCCTCA 59.964 45.455 3.94 0.00 42.66 3.86
1481 1487 8.593945 TTGCTTCAAACCCTCAATCTATTATT 57.406 30.769 0.00 0.00 0.00 1.40
1513 1519 7.822161 TGCCATGTACTTGAATATGCTATTT 57.178 32.000 10.20 0.00 0.00 1.40
1561 1567 6.549736 GTCCTGCAATTAATGGTACCCTAAAT 59.450 38.462 10.07 3.20 0.00 1.40
1754 1781 7.559590 ACTCCAGATTACATTTCTGCATAAC 57.440 36.000 0.00 0.00 39.42 1.89
1781 1808 6.824305 TTGATCTGAAATTGTTCCTCTTCC 57.176 37.500 0.00 0.00 32.28 3.46
1965 1992 5.551760 CTTGGCTTACTTCAAGGTATGTG 57.448 43.478 0.00 0.00 37.35 3.21
2005 2032 8.571336 CATTTATCTCCAATAGGGTGCTAAAAG 58.429 37.037 0.00 0.00 35.54 2.27
2006 2033 3.886123 TCTCCAATAGGGTGCTAAAAGC 58.114 45.455 0.00 0.00 37.33 3.51
2007 2034 3.265737 TCTCCAATAGGGTGCTAAAAGCA 59.734 43.478 0.00 0.00 41.87 3.91
2026 2053 5.705609 AGCATTTTTAGTTGTTGGATCGT 57.294 34.783 0.00 0.00 0.00 3.73
2027 2054 6.084326 AGCATTTTTAGTTGTTGGATCGTT 57.916 33.333 0.00 0.00 0.00 3.85
2028 2055 5.920273 AGCATTTTTAGTTGTTGGATCGTTG 59.080 36.000 0.00 0.00 0.00 4.10
2029 2056 5.118510 GCATTTTTAGTTGTTGGATCGTTGG 59.881 40.000 0.00 0.00 0.00 3.77
2030 2057 3.907894 TTTAGTTGTTGGATCGTTGGC 57.092 42.857 0.00 0.00 0.00 4.52
2031 2058 2.851263 TAGTTGTTGGATCGTTGGCT 57.149 45.000 0.00 0.00 0.00 4.75
2043 2070 5.941058 TGGATCGTTGGCTTCAGTAATTTAA 59.059 36.000 0.00 0.00 0.00 1.52
2121 2148 3.191791 GCATTTTTGGCAGCATTTGGATT 59.808 39.130 0.00 0.00 0.00 3.01
2146 2173 6.648310 TGTTGCTTGTTCTGTTTTTCAAATGA 59.352 30.769 0.00 0.00 0.00 2.57
2180 2207 3.974585 GTTAGTCGCTAACTGCTGTTC 57.025 47.619 12.67 0.00 41.93 3.18
2181 2208 3.314553 GTTAGTCGCTAACTGCTGTTCA 58.685 45.455 12.67 0.00 41.93 3.18
2204 2314 1.526405 TGCTCTTGCAGGTGACACA 59.474 52.632 8.08 0.00 45.31 3.72
2297 2407 0.180406 ACGAAACACCTGAGGCAAGT 59.820 50.000 0.00 0.00 0.00 3.16
2369 2479 2.060326 TACTCACGAAGCAGTTTCCG 57.940 50.000 0.00 0.00 31.82 4.30
2378 2488 0.988832 AGCAGTTTCCGGTATTCCCA 59.011 50.000 0.00 0.00 0.00 4.37
2384 2494 3.268595 AGTTTCCGGTATTCCCAATTCCT 59.731 43.478 0.00 0.00 0.00 3.36
2455 2706 6.544931 TCTTAATATCTGCTCTTGCTGCAAAT 59.455 34.615 16.74 8.23 40.13 2.32
2473 2724 8.905702 GCTGCAAATATACATATTTTTCTTCGG 58.094 33.333 4.77 0.00 40.07 4.30
2485 2736 9.282247 CATATTTTTCTTCGGTTCATCTCTTTG 57.718 33.333 0.00 0.00 0.00 2.77
2505 2759 4.582701 TGCCGAATTTTGACTGAAATGT 57.417 36.364 0.00 0.00 30.06 2.71
2564 2818 0.933796 GAAAGCAGGCGTATCAGCTC 59.066 55.000 0.00 0.00 36.07 4.09
2713 2969 2.288152 ACAAACAAGCCATAGCCAAACG 60.288 45.455 0.00 0.00 41.25 3.60
2850 3106 3.059461 GCGACTACACGAAATGTTTCCAA 60.059 43.478 0.00 0.00 43.19 3.53
2858 3114 5.234116 ACACGAAATGTTTCCAAATGCTTTC 59.766 36.000 0.00 0.00 38.98 2.62
3036 3314 1.891919 TGCCACTTGCTTCACCGTC 60.892 57.895 0.00 0.00 42.00 4.79
3063 3341 2.639327 GCCGCCACAATGGAAAGCT 61.639 57.895 0.00 0.00 40.96 3.74
3110 3388 8.632679 GGCTGAATATGAATTTTCACCTGAATA 58.367 33.333 0.00 0.00 40.49 1.75
3132 3410 8.939201 AATATCGATGTGCAGATAAGATAAGG 57.061 34.615 18.76 0.00 33.64 2.69
3142 3420 5.334414 GCAGATAAGATAAGGCCGACAATTG 60.334 44.000 3.24 3.24 0.00 2.32
3220 3506 2.608752 CCACAGTGGCAAAATGAGAAGC 60.609 50.000 6.67 0.00 0.00 3.86
3382 3675 3.422796 ACAAAACCCAAAACCAAAACCC 58.577 40.909 0.00 0.00 0.00 4.11
3482 3775 1.497991 CACACACTTGTCGATCCGTT 58.502 50.000 0.00 0.00 31.66 4.44
3507 3800 3.233980 TCGGTGCTGGAGCTGTGT 61.234 61.111 0.00 0.00 42.66 3.72
3634 3927 1.743252 GAGGGCCTGCTTCTTCACG 60.743 63.158 12.95 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 4.465446 TGGGCGGAGGAGGAGGAG 62.465 72.222 0.00 0.00 0.00 3.69
83 84 4.465446 CTGGGCGGAGGAGGAGGA 62.465 72.222 0.00 0.00 0.00 3.71
121 125 4.821589 GTGAAGGGGAGCGCGGAG 62.822 72.222 8.83 0.00 0.00 4.63
496 500 4.120755 CCCTTGAGCAGCCCCTCC 62.121 72.222 0.00 0.00 0.00 4.30
556 560 4.082523 ACGACCATGTCCGGCCAG 62.083 66.667 2.24 0.00 0.00 4.85
628 632 2.276120 CTCGAGCTCACGACGTCG 60.276 66.667 34.58 34.58 46.33 5.12
694 698 9.565213 CTGGAGCTAATTTTAAATTGTTGAGAG 57.435 33.333 12.62 2.85 0.00 3.20
706 710 6.374333 CAGCACTAAACCTGGAGCTAATTTTA 59.626 38.462 0.00 0.00 0.00 1.52
791 795 3.657398 TCATTCCATCAGGCTGACAAT 57.343 42.857 21.37 14.90 33.74 2.71
794 798 2.715046 TGTTCATTCCATCAGGCTGAC 58.285 47.619 21.37 4.73 33.74 3.51
873 877 6.932356 ATGCAGATTTACAGTACATTCTGG 57.068 37.500 12.39 0.00 39.48 3.86
914 918 6.399743 TGTGATCGCAGTTATTAACAGGTAA 58.600 36.000 4.45 0.00 0.00 2.85
931 935 1.340017 ACCACCCCATTTCTGTGATCG 60.340 52.381 0.00 0.00 31.66 3.69
939 943 3.448469 TGGTTCACCACCCCATTTC 57.552 52.632 0.00 0.00 46.68 2.17
950 954 4.637977 GGAGGAAGATCAAGAATGGTTCAC 59.362 45.833 0.00 0.00 0.00 3.18
967 971 3.453059 AGGAACGTTCTAGAGGAGGAA 57.547 47.619 26.32 0.00 0.00 3.36
986 990 5.321983 GCTTCTCATATAAGCACGTCAAG 57.678 43.478 4.19 0.00 46.85 3.02
1019 1023 3.498774 AGTGGTGAAGCTGAGATTTGT 57.501 42.857 0.00 0.00 0.00 2.83
1052 1056 0.809385 CTTGGCTGAGCTCACCATTG 59.191 55.000 27.66 21.49 32.39 2.82
1125 1129 6.214191 TGATATCCACACTCAAGAAGTCTC 57.786 41.667 0.00 0.00 35.45 3.36
1178 1182 4.104086 TCAAGAGGGATGCTAGAAAGGAA 58.896 43.478 0.00 0.00 0.00 3.36
1185 1190 4.620589 ATGTCATCAAGAGGGATGCTAG 57.379 45.455 0.00 0.00 43.44 3.42
1192 1197 7.969536 ACGATAAATAATGTCATCAAGAGGG 57.030 36.000 0.00 0.00 0.00 4.30
1209 1214 4.760878 TGCTTGCAGGTATGTACGATAAA 58.239 39.130 0.00 0.00 0.00 1.40
1222 1227 3.194116 ACCATAGTTCATTTGCTTGCAGG 59.806 43.478 0.00 0.00 0.00 4.85
1423 1428 4.939439 GCCTTGCAATTGGAATCAGATTTT 59.061 37.500 13.13 0.00 0.00 1.82
1465 1470 9.686683 GCATGGTAATAATAATAGATTGAGGGT 57.313 33.333 0.00 0.00 0.00 4.34
1467 1472 9.685276 TGGCATGGTAATAATAATAGATTGAGG 57.315 33.333 0.00 0.00 0.00 3.86
1481 1487 9.230122 CATATTCAAGTACATGGCATGGTAATA 57.770 33.333 29.49 20.43 33.60 0.98
1519 1525 1.680338 GACCAAGTGTTGCTTCCTGT 58.320 50.000 0.00 0.00 34.69 4.00
1561 1567 0.391228 TCTTGCACGACCTTAGCACA 59.609 50.000 0.00 0.00 38.11 4.57
1754 1781 7.211966 AGAGGAACAATTTCAGATCAAAGTG 57.788 36.000 4.87 4.87 37.36 3.16
1781 1808 1.563111 CATAGCTTTTTGGGCGCATG 58.437 50.000 10.83 0.00 34.52 4.06
2005 2032 5.118510 CCAACGATCCAACAACTAAAAATGC 59.881 40.000 0.00 0.00 0.00 3.56
2006 2033 5.118510 GCCAACGATCCAACAACTAAAAATG 59.881 40.000 0.00 0.00 0.00 2.32
2007 2034 5.010617 AGCCAACGATCCAACAACTAAAAAT 59.989 36.000 0.00 0.00 0.00 1.82
2008 2035 4.339814 AGCCAACGATCCAACAACTAAAAA 59.660 37.500 0.00 0.00 0.00 1.94
2009 2036 3.886505 AGCCAACGATCCAACAACTAAAA 59.113 39.130 0.00 0.00 0.00 1.52
2011 2038 3.134574 AGCCAACGATCCAACAACTAA 57.865 42.857 0.00 0.00 0.00 2.24
2013 2040 1.880027 GAAGCCAACGATCCAACAACT 59.120 47.619 0.00 0.00 0.00 3.16
2014 2041 1.606668 TGAAGCCAACGATCCAACAAC 59.393 47.619 0.00 0.00 0.00 3.32
2015 2042 1.879380 CTGAAGCCAACGATCCAACAA 59.121 47.619 0.00 0.00 0.00 2.83
2016 2043 1.202758 ACTGAAGCCAACGATCCAACA 60.203 47.619 0.00 0.00 0.00 3.33
2017 2044 1.523758 ACTGAAGCCAACGATCCAAC 58.476 50.000 0.00 0.00 0.00 3.77
2018 2045 3.410631 TTACTGAAGCCAACGATCCAA 57.589 42.857 0.00 0.00 0.00 3.53
2019 2046 3.627395 ATTACTGAAGCCAACGATCCA 57.373 42.857 0.00 0.00 0.00 3.41
2020 2047 4.965119 AAATTACTGAAGCCAACGATCC 57.035 40.909 0.00 0.00 0.00 3.36
2021 2048 7.073342 AGTTAAATTACTGAAGCCAACGATC 57.927 36.000 0.00 0.00 0.00 3.69
2022 2049 6.653320 TGAGTTAAATTACTGAAGCCAACGAT 59.347 34.615 0.00 0.00 0.00 3.73
2023 2050 5.992829 TGAGTTAAATTACTGAAGCCAACGA 59.007 36.000 0.00 0.00 0.00 3.85
2024 2051 6.236017 TGAGTTAAATTACTGAAGCCAACG 57.764 37.500 0.00 0.00 0.00 4.10
2025 2052 6.861572 GGTTGAGTTAAATTACTGAAGCCAAC 59.138 38.462 0.00 0.00 34.89 3.77
2026 2053 6.775629 AGGTTGAGTTAAATTACTGAAGCCAA 59.224 34.615 6.25 0.00 39.52 4.52
2027 2054 6.303839 AGGTTGAGTTAAATTACTGAAGCCA 58.696 36.000 6.25 0.00 39.52 4.75
2028 2055 6.819397 AGGTTGAGTTAAATTACTGAAGCC 57.181 37.500 6.25 0.94 39.52 4.35
2029 2056 9.181805 GAAAAGGTTGAGTTAAATTACTGAAGC 57.818 33.333 2.64 2.64 39.16 3.86
2030 2057 9.678941 GGAAAAGGTTGAGTTAAATTACTGAAG 57.321 33.333 0.00 0.00 0.00 3.02
2031 2058 9.191479 TGGAAAAGGTTGAGTTAAATTACTGAA 57.809 29.630 0.00 0.00 0.00 3.02
2043 2070 5.127194 GGAGAAAACTTGGAAAAGGTTGAGT 59.873 40.000 0.00 0.00 28.63 3.41
2111 2138 4.060205 AGAACAAGCAACAATCCAAATGC 58.940 39.130 0.00 0.00 39.06 3.56
2121 2148 6.648310 TCATTTGAAAAACAGAACAAGCAACA 59.352 30.769 0.00 0.00 0.00 3.33
2146 2173 4.465305 AGCGACTAACTACAAAGGGTACAT 59.535 41.667 0.00 0.00 0.00 2.29
2204 2314 2.233922 CCCATACGAAGTGAACCTGTCT 59.766 50.000 0.00 0.00 45.73 3.41
2288 2398 2.121948 AGATATCTGCCACTTGCCTCA 58.878 47.619 3.89 0.00 40.16 3.86
2369 2479 3.981375 ACCTCCTAGGAATTGGGAATACC 59.019 47.826 19.17 0.00 37.67 2.73
2378 2488 4.039366 GCATCGACTTACCTCCTAGGAATT 59.961 45.833 13.77 4.95 37.67 2.17
2384 2494 3.492656 GCATTGCATCGACTTACCTCCTA 60.493 47.826 3.15 0.00 0.00 2.94
2473 2724 5.343325 GTCAAAATTCGGCAAAGAGATGAAC 59.657 40.000 0.00 0.00 0.00 3.18
2485 2736 4.298332 ACACATTTCAGTCAAAATTCGGC 58.702 39.130 0.00 0.00 0.00 5.54
2505 2759 2.289382 TGCAGAGCGATTTCAAGGTACA 60.289 45.455 0.00 0.00 0.00 2.90
2564 2818 1.171308 CCTGGAGCTTGGATGTGTTG 58.829 55.000 0.00 0.00 0.00 3.33
2713 2969 2.470196 TCTAGACATAGTTGCGACGC 57.530 50.000 14.19 14.19 0.00 5.19
2850 3106 6.315393 GCTGATTGAATCAATTGGAAAGCATT 59.685 34.615 10.09 0.00 39.11 3.56
2858 3114 7.118535 TGTTTCATTGCTGATTGAATCAATTGG 59.881 33.333 10.09 7.24 39.11 3.16
3036 3314 4.794439 TGTGGCGGCGATCTCACG 62.794 66.667 12.98 0.00 33.25 4.35
3063 3341 7.054124 CAGCCCTGGATTTGTCTAGTAATTTA 58.946 38.462 0.00 0.00 0.00 1.40
3110 3388 5.174395 GCCTTATCTTATCTGCACATCGAT 58.826 41.667 0.00 0.00 0.00 3.59
3142 3420 6.485984 AGAATTGACATGATGGCATTAGAGAC 59.514 38.462 0.00 0.00 33.90 3.36
3195 3481 2.884012 CTCATTTTGCCACTGTGGTGTA 59.116 45.455 26.48 11.85 40.46 2.90
3220 3506 5.954296 ACTGGTGATCTGAATTGTGAAAG 57.046 39.130 0.00 0.00 0.00 2.62
3382 3675 3.989787 GGGCAGGCACCGGTTTTG 61.990 66.667 2.97 4.68 0.00 2.44
3482 3775 1.533033 TCCAGCACCGACTCAGGAA 60.533 57.895 0.00 0.00 34.73 3.36
3507 3800 1.306141 ACCCAGCGGAAGGAGATGA 60.306 57.895 0.00 0.00 0.00 2.92
3577 3870 1.137086 CACTACTATGCCAAGGACGCT 59.863 52.381 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.