Multiple sequence alignment - TraesCS5A01G270700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G270700 chr5A 100.000 5253 0 0 1 5253 480821037 480815785 0.000000e+00 9701.0
1 TraesCS5A01G270700 chr5A 92.421 541 33 4 4719 5251 559843680 559844220 0.000000e+00 765.0
2 TraesCS5A01G270700 chr5A 87.952 249 27 3 341 588 22056329 22056083 1.850000e-74 291.0
3 TraesCS5A01G270700 chr5A 90.761 184 14 3 4487 4667 559843515 559843698 5.260000e-60 243.0
4 TraesCS5A01G270700 chr5A 84.663 163 22 3 4496 4655 602638429 602638591 5.440000e-35 159.0
5 TraesCS5A01G270700 chr5A 90.741 54 2 3 3119 3172 502894569 502894519 9.440000e-08 69.4
6 TraesCS5A01G270700 chr5D 93.014 2047 99 18 1 2035 380699097 380697083 0.000000e+00 2948.0
7 TraesCS5A01G270700 chr5D 92.145 993 54 12 3330 4313 380695262 380694285 0.000000e+00 1380.0
8 TraesCS5A01G270700 chr5D 86.038 265 34 3 324 588 307096410 307096149 1.110000e-71 281.0
9 TraesCS5A01G270700 chr5D 76.512 281 62 4 3471 3749 549547191 549546913 3.280000e-32 150.0
10 TraesCS5A01G270700 chr5D 87.097 62 6 2 3121 3181 345098661 345098721 9.440000e-08 69.4
11 TraesCS5A01G270700 chr5B 92.290 1284 66 17 862 2120 456640657 456639382 0.000000e+00 1792.0
12 TraesCS5A01G270700 chr5B 92.945 978 54 10 3330 4297 456638065 456637093 0.000000e+00 1410.0
13 TraesCS5A01G270700 chr5B 85.216 1204 123 32 2146 3326 456639324 456638153 0.000000e+00 1186.0
14 TraesCS5A01G270700 chr5B 93.003 343 14 2 1 343 456641541 456641209 4.730000e-135 492.0
15 TraesCS5A01G270700 chr5B 87.200 250 31 1 339 588 27825302 27825054 3.100000e-72 283.0
16 TraesCS5A01G270700 chr5B 87.500 248 27 2 341 588 159870049 159869806 3.100000e-72 283.0
17 TraesCS5A01G270700 chr5B 82.192 73 7 6 3121 3191 136278763 136278695 2.040000e-04 58.4
18 TraesCS5A01G270700 chr7A 94.030 536 31 1 4719 5253 533557022 533556487 0.000000e+00 811.0
19 TraesCS5A01G270700 chr7A 75.783 351 77 8 3425 3770 604223844 604224191 2.520000e-38 171.0
20 TraesCS5A01G270700 chr7A 84.706 170 21 5 4490 4655 29998261 29998429 1.170000e-36 165.0
21 TraesCS5A01G270700 chr7A 85.185 162 21 3 4496 4654 63320234 63320395 4.210000e-36 163.0
22 TraesCS5A01G270700 chr7A 84.049 163 23 3 4496 4655 734547476 734547638 2.530000e-33 154.0
23 TraesCS5A01G270700 chr7A 81.720 93 9 7 3077 3167 672176189 672176103 2.620000e-08 71.3
24 TraesCS5A01G270700 chr7A 85.075 67 5 5 3121 3185 319764892 319764829 4.390000e-06 63.9
25 TraesCS5A01G270700 chr2A 93.284 536 35 1 4719 5253 716326626 716326091 0.000000e+00 789.0
26 TraesCS5A01G270700 chr2A 93.409 531 34 1 4719 5248 716278293 716277763 0.000000e+00 785.0
27 TraesCS5A01G270700 chr2A 93.097 536 36 1 4719 5253 716418916 716418381 0.000000e+00 784.0
28 TraesCS5A01G270700 chr2A 92.606 541 34 2 4719 5253 566204733 566204193 0.000000e+00 773.0
29 TraesCS5A01G270700 chr2A 92.606 541 33 3 4719 5253 383352181 383351642 0.000000e+00 771.0
30 TraesCS5A01G270700 chr2A 90.659 182 14 3 4486 4665 599829627 599829447 6.800000e-59 239.0
31 TraesCS5A01G270700 chr2A 75.168 298 70 4 3475 3770 107181828 107181533 2.550000e-28 137.0
32 TraesCS5A01G270700 chr4A 93.084 535 36 1 4719 5252 613603973 613603439 0.000000e+00 782.0
33 TraesCS5A01G270700 chr4A 84.049 163 23 3 4496 4655 603416805 603416643 2.530000e-33 154.0
34 TraesCS5A01G270700 chr6A 92.884 534 37 1 4719 5251 36331630 36332163 0.000000e+00 774.0
35 TraesCS5A01G270700 chr6A 84.049 163 22 4 4496 4655 5556822 5556661 2.530000e-33 154.0
36 TraesCS5A01G270700 chr6A 96.364 55 2 0 4665 4719 502356101 502356155 2.010000e-14 91.6
37 TraesCS5A01G270700 chr6A 81.522 92 8 5 3067 3154 584592161 584592247 3.390000e-07 67.6
38 TraesCS5A01G270700 chr3B 91.875 320 26 0 3670 3989 805272397 805272078 1.040000e-121 448.0
39 TraesCS5A01G270700 chr4D 93.088 217 14 1 3773 3989 384271925 384271710 3.050000e-82 316.0
40 TraesCS5A01G270700 chr7D 87.747 253 29 2 337 588 459742869 459743120 1.430000e-75 294.0
41 TraesCS5A01G270700 chr7D 80.909 110 18 3 2425 2532 89759252 89759360 3.370000e-12 84.2
42 TraesCS5A01G270700 chrUn 87.698 252 29 2 338 588 129563906 129564156 5.150000e-75 292.0
43 TraesCS5A01G270700 chr6B 87.500 248 26 3 341 588 176545818 176545576 1.110000e-71 281.0
44 TraesCS5A01G270700 chr1D 87.149 249 31 1 340 588 222025516 222025269 1.110000e-71 281.0
45 TraesCS5A01G270700 chr4B 83.908 174 23 5 4486 4655 653220260 653220432 1.510000e-35 161.0
46 TraesCS5A01G270700 chr2B 75.168 298 70 4 3475 3770 159970094 159969799 2.550000e-28 137.0
47 TraesCS5A01G270700 chr2B 74.847 163 30 8 2994 3154 463193117 463193270 4.390000e-06 63.9
48 TraesCS5A01G270700 chr3A 98.276 58 1 0 4665 4722 739865124 739865181 9.310000e-18 102.0
49 TraesCS5A01G270700 chr3A 98.148 54 1 0 4665 4718 658100432 658100485 1.560000e-15 95.3
50 TraesCS5A01G270700 chr6D 82.796 93 7 5 3066 3154 436419676 436419763 2.030000e-09 75.0
51 TraesCS5A01G270700 chr7B 81.818 88 15 1 3064 3150 28930692 28930605 7.300000e-09 73.1
52 TraesCS5A01G270700 chr2D 100.000 28 0 0 2505 2532 36910382 36910409 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G270700 chr5A 480815785 480821037 5252 True 9701 9701 100.0000 1 5253 1 chr5A.!!$R2 5252
1 TraesCS5A01G270700 chr5A 559843515 559844220 705 False 504 765 91.5910 4487 5251 2 chr5A.!!$F2 764
2 TraesCS5A01G270700 chr5D 380694285 380699097 4812 True 2164 2948 92.5795 1 4313 2 chr5D.!!$R3 4312
3 TraesCS5A01G270700 chr5B 456637093 456641541 4448 True 1220 1792 90.8635 1 4297 4 chr5B.!!$R4 4296
4 TraesCS5A01G270700 chr7A 533556487 533557022 535 True 811 811 94.0300 4719 5253 1 chr7A.!!$R2 534
5 TraesCS5A01G270700 chr2A 716326091 716326626 535 True 789 789 93.2840 4719 5253 1 chr2A.!!$R6 534
6 TraesCS5A01G270700 chr2A 716277763 716278293 530 True 785 785 93.4090 4719 5248 1 chr2A.!!$R5 529
7 TraesCS5A01G270700 chr2A 716418381 716418916 535 True 784 784 93.0970 4719 5253 1 chr2A.!!$R7 534
8 TraesCS5A01G270700 chr2A 566204193 566204733 540 True 773 773 92.6060 4719 5253 1 chr2A.!!$R3 534
9 TraesCS5A01G270700 chr2A 383351642 383352181 539 True 771 771 92.6060 4719 5253 1 chr2A.!!$R2 534
10 TraesCS5A01G270700 chr4A 613603439 613603973 534 True 782 782 93.0840 4719 5252 1 chr4A.!!$R2 533
11 TraesCS5A01G270700 chr6A 36331630 36332163 533 False 774 774 92.8840 4719 5251 1 chr6A.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 701 0.097325 GTTTGTTGCCGTGTGTTCGA 59.903 50.0 0.0 0.0 0.00 3.71 F
698 704 0.460459 TGTTGCCGTGTGTTCGAGAA 60.460 50.0 0.0 0.0 0.00 2.87 F
1112 1560 0.460987 CCACCATCGTGCTCCTTCTC 60.461 60.0 0.0 0.0 38.79 2.87 F
2007 2458 2.027745 GTGGAAGAGATCAAGGCACAGA 60.028 50.0 0.0 0.0 0.00 3.41 F
2448 3076 2.091278 ACTCCCTCCGATCCATCTTACA 60.091 50.0 0.0 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2313 1.153628 CACCCGTTCCTCGATCACC 60.154 63.158 0.00 0.0 42.86 4.02 R
1865 2316 1.437986 CTCCACCCGTTCCTCGATC 59.562 63.158 0.00 0.0 42.86 3.69 R
2454 3082 3.084039 AGTACGAGATACACCCGTTTGA 58.916 45.455 0.00 0.0 37.69 2.69 R
3254 3967 0.255890 TTTGTAGGGCCTGAGGATGC 59.744 55.000 18.53 0.0 0.00 3.91 R
4429 5639 0.036306 AATCTGACCGTTCGGCCTTT 59.964 50.000 11.32 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 185 3.826754 CGAGCTCCCACGCTGCTA 61.827 66.667 8.47 0.00 41.08 3.49
243 246 4.141287 CCCCTGTCTCTCTATCTACAGTG 58.859 52.174 0.00 0.00 38.10 3.66
327 330 8.903820 CAATACCATATCTACACGATCTCCATA 58.096 37.037 0.00 0.00 33.48 2.74
330 333 6.892456 ACCATATCTACACGATCTCCATATGT 59.108 38.462 1.24 0.00 33.48 2.29
340 343 9.778741 ACACGATCTCCATATGTGTTTATATTT 57.221 29.630 1.24 0.00 40.63 1.40
371 374 7.418712 CCTCCGGTCCTTTTTACTCTGTATATT 60.419 40.741 0.00 0.00 0.00 1.28
373 376 8.636213 TCCGGTCCTTTTTACTCTGTATATTAG 58.364 37.037 0.00 0.00 0.00 1.73
449 452 5.297776 ACATCAACATCTACCATGCTAAAGC 59.702 40.000 0.00 0.00 42.50 3.51
484 490 9.850628 ATCAAAATTTAAGTCATGACACATCTG 57.149 29.630 27.02 13.04 0.00 2.90
496 502 9.264719 GTCATGACACATCTGTTGATATTGATA 57.735 33.333 21.07 0.00 0.00 2.15
554 560 7.377766 AGCTAATCAAATTTTACGAAGCTCA 57.622 32.000 0.00 0.00 32.59 4.26
558 564 9.612620 CTAATCAAATTTTACGAAGCTCAACTT 57.387 29.630 0.00 0.00 42.98 2.66
570 576 5.938438 AAGCTCAACTTCAGACAAATCTC 57.062 39.130 0.00 0.00 30.77 2.75
577 583 6.880529 TCAACTTCAGACAAATCTCATATGCA 59.119 34.615 0.00 0.00 30.42 3.96
600 606 8.973378 TGCAAACTAAAAAGTAAAAATGATCGG 58.027 29.630 0.00 0.00 0.00 4.18
655 661 2.371841 TGGCGGGCATGTTTAGATAGAT 59.628 45.455 0.00 0.00 0.00 1.98
662 668 4.457257 GGCATGTTTAGATAGATGGAAGGC 59.543 45.833 0.00 0.00 0.00 4.35
663 669 4.457257 GCATGTTTAGATAGATGGAAGGCC 59.543 45.833 0.00 0.00 0.00 5.19
665 671 3.394606 TGTTTAGATAGATGGAAGGCCCC 59.605 47.826 0.00 0.00 0.00 5.80
685 691 2.159627 CCGTGATAGTCTGTTTGTTGCC 59.840 50.000 0.00 0.00 0.00 4.52
694 700 0.179187 TGTTTGTTGCCGTGTGTTCG 60.179 50.000 0.00 0.00 0.00 3.95
695 701 0.097325 GTTTGTTGCCGTGTGTTCGA 59.903 50.000 0.00 0.00 0.00 3.71
698 704 0.460459 TGTTGCCGTGTGTTCGAGAA 60.460 50.000 0.00 0.00 0.00 2.87
705 711 3.059461 GCCGTGTGTTCGAGAAAATTGTA 60.059 43.478 0.00 0.00 0.00 2.41
706 712 4.451557 CCGTGTGTTCGAGAAAATTGTAC 58.548 43.478 0.00 0.00 0.00 2.90
806 1039 1.233019 GCCTAGTTCGCATGCATGAT 58.767 50.000 30.64 11.73 0.00 2.45
808 1041 2.807967 GCCTAGTTCGCATGCATGATAA 59.192 45.455 30.64 18.90 0.00 1.75
809 1042 3.438087 GCCTAGTTCGCATGCATGATAAT 59.562 43.478 30.64 14.80 0.00 1.28
810 1043 4.631377 GCCTAGTTCGCATGCATGATAATA 59.369 41.667 30.64 15.12 0.00 0.98
811 1044 5.220548 GCCTAGTTCGCATGCATGATAATAG 60.221 44.000 30.64 22.01 0.00 1.73
812 1045 5.871524 CCTAGTTCGCATGCATGATAATAGT 59.128 40.000 30.64 13.88 0.00 2.12
813 1046 6.369890 CCTAGTTCGCATGCATGATAATAGTT 59.630 38.462 30.64 9.29 0.00 2.24
814 1047 7.545615 CCTAGTTCGCATGCATGATAATAGTTA 59.454 37.037 30.64 9.89 0.00 2.24
815 1048 7.912056 AGTTCGCATGCATGATAATAGTTAT 57.088 32.000 30.64 1.91 0.00 1.89
816 1049 7.745972 AGTTCGCATGCATGATAATAGTTATG 58.254 34.615 30.64 0.23 0.00 1.90
817 1050 7.603784 AGTTCGCATGCATGATAATAGTTATGA 59.396 33.333 30.64 6.48 0.00 2.15
818 1051 8.393366 GTTCGCATGCATGATAATAGTTATGAT 58.607 33.333 30.64 0.00 0.00 2.45
819 1052 9.598517 TTCGCATGCATGATAATAGTTATGATA 57.401 29.630 30.64 0.00 0.00 2.15
820 1053 9.252962 TCGCATGCATGATAATAGTTATGATAG 57.747 33.333 30.64 0.00 0.00 2.08
821 1054 8.493547 CGCATGCATGATAATAGTTATGATAGG 58.506 37.037 30.64 0.00 0.00 2.57
822 1055 9.334947 GCATGCATGATAATAGTTATGATAGGT 57.665 33.333 30.64 0.00 0.00 3.08
926 1368 7.696453 CCAGCGTTTACATTTACTAATCCAAAG 59.304 37.037 0.00 0.00 0.00 2.77
948 1390 1.334329 GGTACGCAAAGACCAAAACCG 60.334 52.381 0.00 0.00 35.65 4.44
982 1429 6.120507 AGATCTCCACCTTTATATTGAGCC 57.879 41.667 0.00 0.00 0.00 4.70
1112 1560 0.460987 CCACCATCGTGCTCCTTCTC 60.461 60.000 0.00 0.00 38.79 2.87
1734 2185 4.280494 ACGTGGACGCGCTGTTCT 62.280 61.111 5.73 0.00 44.43 3.01
1874 2325 2.412323 CGACCCGGTGATCGAGGAA 61.412 63.158 13.17 0.00 40.86 3.36
2007 2458 2.027745 GTGGAAGAGATCAAGGCACAGA 60.028 50.000 0.00 0.00 0.00 3.41
2100 2614 4.825422 AGACGATGATCAAAGTCATGTGT 58.175 39.130 25.73 10.15 38.88 3.72
2111 2625 4.543590 AAGTCATGTGTAGGAGACCTTG 57.456 45.455 0.00 0.00 34.61 3.61
2120 2634 3.327757 TGTAGGAGACCTTGCAGATGTTT 59.672 43.478 0.00 0.00 34.61 2.83
2121 2635 3.515602 AGGAGACCTTGCAGATGTTTT 57.484 42.857 0.00 0.00 0.00 2.43
2176 2723 4.689345 AGTCTGAAAAAGTGTATGGCGTAC 59.311 41.667 9.96 9.96 0.00 3.67
2183 2730 9.163899 TGAAAAAGTGTATGGCGTACATAATAA 57.836 29.630 21.50 3.75 44.65 1.40
2184 2731 9.429600 GAAAAAGTGTATGGCGTACATAATAAC 57.570 33.333 21.50 8.54 44.65 1.89
2185 2732 8.726870 AAAAGTGTATGGCGTACATAATAACT 57.273 30.769 21.50 10.57 44.65 2.24
2187 2734 6.220930 AGTGTATGGCGTACATAATAACTGG 58.779 40.000 21.50 0.00 44.65 4.00
2188 2735 5.987347 GTGTATGGCGTACATAATAACTGGT 59.013 40.000 21.50 0.00 44.65 4.00
2190 2737 7.327761 GTGTATGGCGTACATAATAACTGGTAG 59.672 40.741 21.50 0.00 44.65 3.18
2191 2738 5.857471 TGGCGTACATAATAACTGGTAGT 57.143 39.130 0.00 0.00 0.00 2.73
2192 2739 6.957920 TGGCGTACATAATAACTGGTAGTA 57.042 37.500 0.00 0.00 0.00 1.82
2194 2741 6.152379 GGCGTACATAATAACTGGTAGTACC 58.848 44.000 12.80 12.80 39.22 3.34
2195 2742 6.015940 GGCGTACATAATAACTGGTAGTACCT 60.016 42.308 20.07 2.88 39.58 3.08
2196 2743 7.174946 GGCGTACATAATAACTGGTAGTACCTA 59.825 40.741 20.07 5.14 39.58 3.08
2197 2744 8.233190 GCGTACATAATAACTGGTAGTACCTAG 58.767 40.741 20.07 16.52 39.58 3.02
2198 2745 9.277783 CGTACATAATAACTGGTAGTACCTAGT 57.722 37.037 20.07 17.10 39.58 2.57
2251 2822 9.450807 AAACTTCATAACACAAATCGAGAAAAG 57.549 29.630 0.00 0.00 0.00 2.27
2252 2823 7.584987 ACTTCATAACACAAATCGAGAAAAGG 58.415 34.615 0.00 0.00 0.00 3.11
2255 2826 8.335532 TCATAACACAAATCGAGAAAAGGAAT 57.664 30.769 0.00 0.00 0.00 3.01
2268 2841 6.238484 CGAGAAAAGGAATAGGCAAATTCGAT 60.238 38.462 6.53 0.00 36.84 3.59
2325 2898 2.092103 TGGCCTTTTATCGCTACCCATT 60.092 45.455 3.32 0.00 0.00 3.16
2329 2902 3.815401 CCTTTTATCGCTACCCATTCCAG 59.185 47.826 0.00 0.00 0.00 3.86
2342 2915 5.907421 ACCCATTCCAGATTTGGCATATAT 58.093 37.500 0.00 0.00 44.63 0.86
2343 2916 5.718130 ACCCATTCCAGATTTGGCATATATG 59.282 40.000 8.45 8.45 44.63 1.78
2344 2917 5.718130 CCCATTCCAGATTTGGCATATATGT 59.282 40.000 14.14 0.00 44.63 2.29
2349 2977 7.457024 TCCAGATTTGGCATATATGTGAATG 57.543 36.000 14.14 4.95 44.63 2.67
2353 2981 9.188588 CAGATTTGGCATATATGTGAATGTTTC 57.811 33.333 14.14 2.77 0.00 2.78
2380 3008 9.262472 CTCACAATTATAAGTACAAAACGAAGC 57.738 33.333 0.00 0.00 0.00 3.86
2431 3059 4.401925 AGGCAATGGCAAAGATATACTCC 58.598 43.478 10.05 0.00 43.71 3.85
2436 3064 2.632996 TGGCAAAGATATACTCCCTCCG 59.367 50.000 0.00 0.00 0.00 4.63
2443 3071 4.798882 AGATATACTCCCTCCGATCCATC 58.201 47.826 0.00 0.00 0.00 3.51
2447 3075 2.599677 ACTCCCTCCGATCCATCTTAC 58.400 52.381 0.00 0.00 0.00 2.34
2448 3076 2.091278 ACTCCCTCCGATCCATCTTACA 60.091 50.000 0.00 0.00 0.00 2.41
2450 3078 4.202684 ACTCCCTCCGATCCATCTTACATA 60.203 45.833 0.00 0.00 0.00 2.29
2453 3081 4.711846 CCCTCCGATCCATCTTACATATCA 59.288 45.833 0.00 0.00 0.00 2.15
2454 3082 5.365025 CCCTCCGATCCATCTTACATATCAT 59.635 44.000 0.00 0.00 0.00 2.45
2455 3083 6.462207 CCCTCCGATCCATCTTACATATCATC 60.462 46.154 0.00 0.00 0.00 2.92
2456 3084 6.097412 CCTCCGATCCATCTTACATATCATCA 59.903 42.308 0.00 0.00 0.00 3.07
2459 3087 7.819415 TCCGATCCATCTTACATATCATCAAAC 59.181 37.037 0.00 0.00 0.00 2.93
2460 3088 7.201470 CCGATCCATCTTACATATCATCAAACG 60.201 40.741 0.00 0.00 0.00 3.60
2469 3097 6.174720 ACATATCATCAAACGGGTGTATCT 57.825 37.500 0.00 0.00 0.00 1.98
2470 3098 6.223852 ACATATCATCAAACGGGTGTATCTC 58.776 40.000 0.00 0.00 0.00 2.75
2484 3112 6.514541 CGGGTGTATCTCGTACTGAAATATGT 60.515 42.308 0.00 0.00 34.99 2.29
2505 3133 5.977635 TGTCTAGATATATCCATTTGGGCG 58.022 41.667 9.18 0.00 36.21 6.13
2506 3134 5.719563 TGTCTAGATATATCCATTTGGGCGA 59.280 40.000 9.18 0.00 36.21 5.54
2527 3155 6.166279 GCGACAAATAATATGGATCAGAGGA 58.834 40.000 0.00 0.00 0.00 3.71
2585 3241 2.597578 AGCCGGGTAAACCTGATTTT 57.402 45.000 3.10 0.00 45.36 1.82
2586 3242 2.884320 AGCCGGGTAAACCTGATTTTT 58.116 42.857 3.10 0.00 45.36 1.94
2587 3243 2.823747 AGCCGGGTAAACCTGATTTTTC 59.176 45.455 3.10 0.00 45.36 2.29
2588 3244 2.094390 GCCGGGTAAACCTGATTTTTCC 60.094 50.000 9.65 0.00 45.36 3.13
2589 3245 2.494471 CCGGGTAAACCTGATTTTTCCC 59.506 50.000 9.65 1.25 45.36 3.97
2590 3246 3.861276 GGGTAAACCTGATTTTTCCCG 57.139 47.619 0.00 0.00 35.20 5.14
2591 3247 2.094390 GGGTAAACCTGATTTTTCCCGC 60.094 50.000 0.00 0.00 35.20 6.13
2592 3248 2.559231 GGTAAACCTGATTTTTCCCGCA 59.441 45.455 0.00 0.00 0.00 5.69
2593 3249 3.006003 GGTAAACCTGATTTTTCCCGCAA 59.994 43.478 0.00 0.00 0.00 4.85
2594 3250 3.828875 AAACCTGATTTTTCCCGCAAA 57.171 38.095 0.00 0.00 0.00 3.68
2595 3251 3.828875 AACCTGATTTTTCCCGCAAAA 57.171 38.095 0.00 0.00 31.73 2.44
2596 3252 3.828875 ACCTGATTTTTCCCGCAAAAA 57.171 38.095 5.90 5.90 45.88 1.94
2649 3305 6.451064 TTTCTTCCTTTCTCCACTTTTGTC 57.549 37.500 0.00 0.00 0.00 3.18
2650 3306 4.127171 TCTTCCTTTCTCCACTTTTGTCG 58.873 43.478 0.00 0.00 0.00 4.35
2653 3309 4.266714 TCCTTTCTCCACTTTTGTCGTTT 58.733 39.130 0.00 0.00 0.00 3.60
2654 3310 4.703093 TCCTTTCTCCACTTTTGTCGTTTT 59.297 37.500 0.00 0.00 0.00 2.43
2789 3446 9.507280 GTATCAACATTCACAATACCAATTCAG 57.493 33.333 0.00 0.00 0.00 3.02
2984 3650 3.359950 TCCGGTTTTACTAGTCCTCCTC 58.640 50.000 0.00 0.00 0.00 3.71
2988 3654 5.221204 CCGGTTTTACTAGTCCTCCTCATAC 60.221 48.000 0.00 0.00 0.00 2.39
3087 3767 9.626045 AATTGATTCGTATTTGAAAGAAGTTCC 57.374 29.630 0.00 0.00 35.12 3.62
3184 3864 4.585162 ACACGAGAGAATAATAGACCCAGG 59.415 45.833 0.00 0.00 0.00 4.45
3188 3868 5.546526 GAGAGAATAATAGACCCAGGCAAG 58.453 45.833 0.00 0.00 0.00 4.01
3216 3906 9.981460 ACAATAGATTTCTCCTAGGTTTCATTT 57.019 29.630 9.08 0.00 0.00 2.32
3266 3988 1.188863 ATGTTTTGCATCCTCAGGCC 58.811 50.000 0.00 0.00 30.67 5.19
3293 4015 2.597510 GCCACTGCCCGACCTTTT 60.598 61.111 0.00 0.00 0.00 2.27
3326 4049 4.561326 GCAGCAGCTAGAAAAATTTCCCAA 60.561 41.667 0.00 0.00 36.43 4.12
3328 4051 5.579511 CAGCAGCTAGAAAAATTTCCCAATG 59.420 40.000 0.00 0.00 37.92 2.82
3433 4632 2.900546 AGAGACCGATGGACTGACTTTT 59.099 45.455 0.00 0.00 0.00 2.27
3482 4681 2.813908 GCTAGCGTGGACAACCCG 60.814 66.667 0.00 0.00 37.93 5.28
3557 4756 1.227497 GAAGGCGATGGAGGAGCTG 60.227 63.158 0.00 0.00 0.00 4.24
3958 5157 2.436109 GCTCCTGCAGGGGTTCAA 59.564 61.111 33.05 11.98 38.19 2.69
3959 5158 1.973812 GCTCCTGCAGGGGTTCAAC 60.974 63.158 33.05 13.04 38.19 3.18
4080 5279 2.336809 CGCATCTCTACGGGCCTC 59.663 66.667 0.84 0.00 0.00 4.70
4085 5284 2.307768 CATCTCTACGGGCCTCAGTAA 58.692 52.381 0.84 0.00 0.00 2.24
4091 5290 0.542232 ACGGGCCTCAGTAAGACTGT 60.542 55.000 0.84 0.00 46.03 3.55
4094 5293 1.404315 GGGCCTCAGTAAGACTGTTCG 60.404 57.143 0.84 0.00 46.03 3.95
4096 5295 2.288886 GGCCTCAGTAAGACTGTTCGTT 60.289 50.000 6.51 0.00 46.03 3.85
4109 5308 2.921121 CTGTTCGTTGCGACAGCTATAA 59.079 45.455 4.64 0.00 45.42 0.98
4118 5317 2.872858 GCGACAGCTATAAAAGGAAGGG 59.127 50.000 0.00 0.00 41.01 3.95
4124 5323 6.129874 ACAGCTATAAAAGGAAGGGGAAATC 58.870 40.000 0.00 0.00 0.00 2.17
4126 5325 5.195756 AGCTATAAAAGGAAGGGGAAATCCA 59.804 40.000 1.22 0.00 38.23 3.41
4127 5326 6.077993 GCTATAAAAGGAAGGGGAAATCCAT 58.922 40.000 1.22 0.00 38.23 3.41
4128 5327 7.075009 AGCTATAAAAGGAAGGGGAAATCCATA 59.925 37.037 1.22 0.00 38.23 2.74
4132 5331 2.175715 AGGAAGGGGAAATCCATAGTGC 59.824 50.000 1.22 0.00 38.23 4.40
4178 5377 1.105167 CGTGTCTGAGCCCCGGTATA 61.105 60.000 0.00 0.00 0.00 1.47
4193 5392 2.281498 CGGTATATGCAGTCAACGTGTG 59.719 50.000 0.00 0.00 0.00 3.82
4197 5396 0.657312 ATGCAGTCAACGTGTGTGTG 59.343 50.000 0.00 0.00 0.00 3.82
4198 5397 1.351707 GCAGTCAACGTGTGTGTGG 59.648 57.895 0.00 0.00 0.00 4.17
4199 5398 2.013807 CAGTCAACGTGTGTGTGGG 58.986 57.895 0.00 0.00 0.00 4.61
4203 5402 0.745128 TCAACGTGTGTGTGGGGAAC 60.745 55.000 0.00 0.00 0.00 3.62
4257 5459 7.012044 AGGTTTGTATGTATCGAATAAAGTGGC 59.988 37.037 0.00 0.00 0.00 5.01
4277 5482 1.227556 GTGTGACGAACCCAGCTGT 60.228 57.895 13.81 0.00 0.00 4.40
4279 5484 1.668151 GTGACGAACCCAGCTGTCC 60.668 63.158 13.81 0.00 0.00 4.02
4288 5493 2.338620 CAGCTGTCCGTGAACCGA 59.661 61.111 5.25 0.00 39.56 4.69
4292 5497 1.292223 CTGTCCGTGAACCGATGGT 59.708 57.895 0.00 0.00 39.56 3.55
4313 5523 2.364324 TGACCTGGACCATATCGTAAGC 59.636 50.000 0.00 0.00 37.18 3.09
4314 5524 2.628657 GACCTGGACCATATCGTAAGCT 59.371 50.000 0.00 0.00 37.18 3.74
4315 5525 3.039011 ACCTGGACCATATCGTAAGCTT 58.961 45.455 3.48 3.48 37.18 3.74
4316 5526 3.454812 ACCTGGACCATATCGTAAGCTTT 59.545 43.478 3.20 0.00 37.18 3.51
4317 5527 4.080526 ACCTGGACCATATCGTAAGCTTTT 60.081 41.667 3.20 0.00 37.18 2.27
4318 5528 4.881850 CCTGGACCATATCGTAAGCTTTTT 59.118 41.667 3.20 0.00 37.18 1.94
4347 5557 6.913873 TTTGAGTAAACCATATCGTAAGGC 57.086 37.500 0.00 0.00 38.47 4.35
4348 5558 5.864418 TGAGTAAACCATATCGTAAGGCT 57.136 39.130 0.00 0.00 38.47 4.58
4349 5559 6.964807 TGAGTAAACCATATCGTAAGGCTA 57.035 37.500 0.00 0.00 38.47 3.93
4350 5560 7.534723 TGAGTAAACCATATCGTAAGGCTAT 57.465 36.000 0.00 0.00 38.47 2.97
4351 5561 7.375834 TGAGTAAACCATATCGTAAGGCTATG 58.624 38.462 0.00 0.00 34.92 2.23
4352 5562 7.014905 TGAGTAAACCATATCGTAAGGCTATGT 59.985 37.037 0.00 0.00 33.98 2.29
4353 5563 8.413309 AGTAAACCATATCGTAAGGCTATGTA 57.587 34.615 0.00 0.00 33.98 2.29
4354 5564 8.302438 AGTAAACCATATCGTAAGGCTATGTAC 58.698 37.037 0.00 0.00 33.98 2.90
4355 5565 6.659745 AACCATATCGTAAGGCTATGTACA 57.340 37.500 0.00 0.00 33.98 2.90
4356 5566 6.852420 ACCATATCGTAAGGCTATGTACAT 57.148 37.500 13.93 13.93 33.98 2.29
4357 5567 7.241042 ACCATATCGTAAGGCTATGTACATT 57.759 36.000 14.77 0.00 33.98 2.71
4358 5568 7.097192 ACCATATCGTAAGGCTATGTACATTG 58.903 38.462 14.77 13.38 33.98 2.82
4359 5569 7.097192 CCATATCGTAAGGCTATGTACATTGT 58.903 38.462 14.77 0.00 33.98 2.71
4360 5570 8.248253 CCATATCGTAAGGCTATGTACATTGTA 58.752 37.037 14.77 0.00 33.98 2.41
4361 5571 9.073368 CATATCGTAAGGCTATGTACATTGTAC 57.927 37.037 14.77 18.13 38.47 2.90
4362 5572 5.835257 TCGTAAGGCTATGTACATTGTACC 58.165 41.667 21.20 9.47 38.47 3.34
4363 5573 5.360429 TCGTAAGGCTATGTACATTGTACCA 59.640 40.000 21.20 11.57 38.47 3.25
4364 5574 6.041182 TCGTAAGGCTATGTACATTGTACCAT 59.959 38.462 21.20 16.51 38.47 3.55
4365 5575 7.231115 TCGTAAGGCTATGTACATTGTACCATA 59.769 37.037 21.20 16.69 38.47 2.74
4366 5576 8.033038 CGTAAGGCTATGTACATTGTACCATAT 58.967 37.037 21.20 12.31 0.00 1.78
4369 5579 8.430573 AGGCTATGTACATTGTACCATATACA 57.569 34.615 21.20 0.99 0.00 2.29
4370 5580 8.876181 AGGCTATGTACATTGTACCATATACAA 58.124 33.333 21.20 2.22 41.05 2.41
4371 5581 9.496873 GGCTATGTACATTGTACCATATACAAA 57.503 33.333 21.20 3.01 40.32 2.83
4374 5584 7.795482 TGTACATTGTACCATATACAAAGGC 57.205 36.000 21.20 0.00 40.32 4.35
4375 5585 6.768861 TGTACATTGTACCATATACAAAGGCC 59.231 38.462 21.20 0.00 40.32 5.19
4376 5586 5.761205 ACATTGTACCATATACAAAGGCCA 58.239 37.500 5.01 0.00 40.32 5.36
4377 5587 6.372931 ACATTGTACCATATACAAAGGCCAT 58.627 36.000 5.01 0.00 40.32 4.40
4378 5588 6.265196 ACATTGTACCATATACAAAGGCCATG 59.735 38.462 5.01 6.21 40.32 3.66
4379 5589 4.724399 TGTACCATATACAAAGGCCATGG 58.276 43.478 7.63 7.63 41.60 3.66
4380 5590 4.413851 TGTACCATATACAAAGGCCATGGA 59.586 41.667 18.40 9.30 38.77 3.41
4381 5591 3.832527 ACCATATACAAAGGCCATGGAC 58.167 45.455 18.40 14.73 38.77 4.02
4382 5592 3.204158 ACCATATACAAAGGCCATGGACA 59.796 43.478 22.78 0.00 38.77 4.02
4383 5593 4.214310 CCATATACAAAGGCCATGGACAA 58.786 43.478 22.78 0.00 38.77 3.18
4384 5594 4.834496 CCATATACAAAGGCCATGGACAAT 59.166 41.667 22.78 4.96 38.77 2.71
4385 5595 6.009589 CCATATACAAAGGCCATGGACAATA 58.990 40.000 22.78 9.50 38.77 1.90
4386 5596 6.664816 CCATATACAAAGGCCATGGACAATAT 59.335 38.462 22.78 13.51 38.77 1.28
4387 5597 7.833682 CCATATACAAAGGCCATGGACAATATA 59.166 37.037 22.78 15.20 38.77 0.86
4388 5598 9.241919 CATATACAAAGGCCATGGACAATATAA 57.758 33.333 22.78 0.00 0.00 0.98
4389 5599 9.995594 ATATACAAAGGCCATGGACAATATAAT 57.004 29.630 22.78 8.42 0.00 1.28
4390 5600 6.409524 ACAAAGGCCATGGACAATATAATG 57.590 37.500 22.78 9.78 0.00 1.90
4391 5601 6.135454 ACAAAGGCCATGGACAATATAATGA 58.865 36.000 22.78 0.00 0.00 2.57
4392 5602 6.610830 ACAAAGGCCATGGACAATATAATGAA 59.389 34.615 22.78 0.00 0.00 2.57
4393 5603 6.906157 AAGGCCATGGACAATATAATGAAG 57.094 37.500 22.78 0.00 0.00 3.02
4394 5604 5.957132 AGGCCATGGACAATATAATGAAGT 58.043 37.500 22.78 0.00 0.00 3.01
4395 5605 5.771666 AGGCCATGGACAATATAATGAAGTG 59.228 40.000 22.78 0.00 0.00 3.16
4396 5606 5.464168 GCCATGGACAATATAATGAAGTGC 58.536 41.667 18.40 0.00 0.00 4.40
4397 5607 5.242393 GCCATGGACAATATAATGAAGTGCT 59.758 40.000 18.40 0.00 0.00 4.40
4398 5608 6.239120 GCCATGGACAATATAATGAAGTGCTT 60.239 38.462 18.40 0.00 0.00 3.91
4399 5609 7.040478 GCCATGGACAATATAATGAAGTGCTTA 60.040 37.037 18.40 0.00 0.00 3.09
4400 5610 8.509690 CCATGGACAATATAATGAAGTGCTTAG 58.490 37.037 5.56 0.00 0.00 2.18
4401 5611 9.276590 CATGGACAATATAATGAAGTGCTTAGA 57.723 33.333 0.00 0.00 0.00 2.10
4402 5612 8.893219 TGGACAATATAATGAAGTGCTTAGAG 57.107 34.615 0.00 0.00 0.00 2.43
4403 5613 8.704668 TGGACAATATAATGAAGTGCTTAGAGA 58.295 33.333 0.00 0.00 0.00 3.10
4404 5614 9.202273 GGACAATATAATGAAGTGCTTAGAGAG 57.798 37.037 0.00 0.00 0.00 3.20
4405 5615 9.973450 GACAATATAATGAAGTGCTTAGAGAGA 57.027 33.333 0.00 0.00 0.00 3.10
4408 5618 9.434420 AATATAATGAAGTGCTTAGAGAGATGC 57.566 33.333 0.00 0.00 0.00 3.91
4409 5619 5.356291 AATGAAGTGCTTAGAGAGATGCT 57.644 39.130 0.00 0.00 0.00 3.79
4410 5620 4.815533 TGAAGTGCTTAGAGAGATGCTT 57.184 40.909 0.00 0.00 0.00 3.91
4411 5621 5.157940 TGAAGTGCTTAGAGAGATGCTTT 57.842 39.130 0.00 0.00 0.00 3.51
4412 5622 6.286240 TGAAGTGCTTAGAGAGATGCTTTA 57.714 37.500 0.00 0.00 0.00 1.85
4413 5623 6.701340 TGAAGTGCTTAGAGAGATGCTTTAA 58.299 36.000 0.00 0.00 0.00 1.52
4414 5624 7.161404 TGAAGTGCTTAGAGAGATGCTTTAAA 58.839 34.615 0.00 0.00 0.00 1.52
4415 5625 7.661437 TGAAGTGCTTAGAGAGATGCTTTAAAA 59.339 33.333 0.00 0.00 0.00 1.52
4416 5626 8.572855 AAGTGCTTAGAGAGATGCTTTAAAAT 57.427 30.769 0.00 0.00 0.00 1.82
4417 5627 9.672673 AAGTGCTTAGAGAGATGCTTTAAAATA 57.327 29.630 0.00 0.00 0.00 1.40
4418 5628 9.672673 AGTGCTTAGAGAGATGCTTTAAAATAA 57.327 29.630 0.00 0.00 0.00 1.40
4419 5629 9.709600 GTGCTTAGAGAGATGCTTTAAAATAAC 57.290 33.333 0.00 0.00 0.00 1.89
4420 5630 8.604035 TGCTTAGAGAGATGCTTTAAAATAACG 58.396 33.333 0.00 0.00 0.00 3.18
4421 5631 8.064814 GCTTAGAGAGATGCTTTAAAATAACGG 58.935 37.037 0.00 0.00 0.00 4.44
4422 5632 9.314321 CTTAGAGAGATGCTTTAAAATAACGGA 57.686 33.333 0.00 0.00 0.00 4.69
4423 5633 9.661563 TTAGAGAGATGCTTTAAAATAACGGAA 57.338 29.630 0.00 0.00 0.00 4.30
4424 5634 8.561738 AGAGAGATGCTTTAAAATAACGGAAA 57.438 30.769 0.00 0.00 0.00 3.13
4425 5635 9.178758 AGAGAGATGCTTTAAAATAACGGAAAT 57.821 29.630 0.00 0.00 0.00 2.17
4426 5636 9.226345 GAGAGATGCTTTAAAATAACGGAAATG 57.774 33.333 0.00 0.00 0.00 2.32
4427 5637 8.956426 AGAGATGCTTTAAAATAACGGAAATGA 58.044 29.630 0.00 0.00 0.00 2.57
4428 5638 9.736023 GAGATGCTTTAAAATAACGGAAATGAT 57.264 29.630 0.00 0.00 0.00 2.45
4435 5645 9.589111 TTTAAAATAACGGAAATGATAAAGGCC 57.411 29.630 0.00 0.00 0.00 5.19
4436 5646 5.432885 AATAACGGAAATGATAAAGGCCG 57.567 39.130 0.00 0.00 43.95 6.13
4437 5647 2.702592 ACGGAAATGATAAAGGCCGA 57.297 45.000 0.00 0.00 41.11 5.54
4438 5648 2.993937 ACGGAAATGATAAAGGCCGAA 58.006 42.857 0.00 0.00 41.11 4.30
4439 5649 2.681344 ACGGAAATGATAAAGGCCGAAC 59.319 45.455 0.00 0.00 41.11 3.95
4440 5650 2.286184 CGGAAATGATAAAGGCCGAACG 60.286 50.000 0.00 0.00 41.11 3.95
4441 5651 2.032924 GGAAATGATAAAGGCCGAACGG 59.967 50.000 9.00 9.00 38.57 4.44
4442 5652 2.413310 AATGATAAAGGCCGAACGGT 57.587 45.000 14.63 0.00 37.65 4.83
4443 5653 1.949465 ATGATAAAGGCCGAACGGTC 58.051 50.000 9.95 9.95 40.91 4.79
4444 5654 0.609151 TGATAAAGGCCGAACGGTCA 59.391 50.000 19.62 8.92 43.56 4.02
4445 5655 1.287425 GATAAAGGCCGAACGGTCAG 58.713 55.000 19.62 0.00 43.56 3.51
4446 5656 0.899720 ATAAAGGCCGAACGGTCAGA 59.100 50.000 19.62 4.88 43.56 3.27
4447 5657 0.899720 TAAAGGCCGAACGGTCAGAT 59.100 50.000 19.62 7.77 43.56 2.90
4448 5658 0.036306 AAAGGCCGAACGGTCAGATT 59.964 50.000 19.62 8.80 43.56 2.40
4449 5659 0.036306 AAGGCCGAACGGTCAGATTT 59.964 50.000 19.62 2.63 43.56 2.17
4450 5660 0.391263 AGGCCGAACGGTCAGATTTC 60.391 55.000 19.62 0.00 43.56 2.17
4451 5661 0.391263 GGCCGAACGGTCAGATTTCT 60.391 55.000 13.03 0.00 40.19 2.52
4452 5662 0.721718 GCCGAACGGTCAGATTTCTG 59.278 55.000 14.63 0.97 39.40 3.02
4453 5663 1.359848 CCGAACGGTCAGATTTCTGG 58.640 55.000 0.00 0.00 43.91 3.86
4461 5671 2.609427 TCAGATTTCTGGCATCTCGG 57.391 50.000 7.68 0.00 43.91 4.63
4462 5672 0.942962 CAGATTTCTGGCATCTCGGC 59.057 55.000 0.00 0.00 40.20 5.54
4463 5673 0.835941 AGATTTCTGGCATCTCGGCT 59.164 50.000 0.00 0.00 41.89 5.52
4464 5674 1.202627 AGATTTCTGGCATCTCGGCTC 60.203 52.381 0.00 0.00 41.89 4.70
4465 5675 0.531532 ATTTCTGGCATCTCGGCTCG 60.532 55.000 0.00 0.00 41.89 5.03
4466 5676 1.604147 TTTCTGGCATCTCGGCTCGA 61.604 55.000 0.00 0.00 41.89 4.04
4467 5677 1.604147 TTCTGGCATCTCGGCTCGAA 61.604 55.000 0.00 0.00 41.89 3.71
4468 5678 1.880340 CTGGCATCTCGGCTCGAAC 60.880 63.158 0.00 0.00 41.89 3.95
4469 5679 2.956964 GGCATCTCGGCTCGAACG 60.957 66.667 3.02 3.02 34.74 3.95
4470 5680 3.621394 GCATCTCGGCTCGAACGC 61.621 66.667 4.46 0.00 34.74 4.84
4471 5681 2.956964 CATCTCGGCTCGAACGCC 60.957 66.667 5.62 5.62 46.68 5.68
4477 5687 3.453679 GGCTCGAACGCCCTCTCT 61.454 66.667 4.34 0.00 44.41 3.10
4478 5688 2.202676 GCTCGAACGCCCTCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
4479 5689 2.995872 GCTCGAACGCCCTCTCTGT 61.996 63.158 0.00 0.00 0.00 3.41
4480 5690 1.587054 CTCGAACGCCCTCTCTGTT 59.413 57.895 0.00 0.00 0.00 3.16
4481 5691 0.734253 CTCGAACGCCCTCTCTGTTG 60.734 60.000 0.00 0.00 0.00 3.33
4482 5692 1.006102 CGAACGCCCTCTCTGTTGT 60.006 57.895 0.00 0.00 0.00 3.32
4483 5693 0.600255 CGAACGCCCTCTCTGTTGTT 60.600 55.000 0.00 0.00 0.00 2.83
4484 5694 1.336517 CGAACGCCCTCTCTGTTGTTA 60.337 52.381 0.00 0.00 0.00 2.41
4485 5695 2.067013 GAACGCCCTCTCTGTTGTTAC 58.933 52.381 0.00 0.00 0.00 2.50
4488 5698 1.732732 CGCCCTCTCTGTTGTTACTCG 60.733 57.143 0.00 0.00 0.00 4.18
4494 5704 5.125739 CCCTCTCTGTTGTTACTCGTTAGAT 59.874 44.000 0.00 0.00 0.00 1.98
4506 5716 1.609072 TCGTTAGATCATCTCCAGCCG 59.391 52.381 0.00 0.00 0.00 5.52
4542 5754 3.257133 AAAAAGGGCGGTCTGGGA 58.743 55.556 0.00 0.00 0.00 4.37
4624 5837 0.727398 CTCCCAGGACGCGAAAAATC 59.273 55.000 15.93 0.00 0.00 2.17
4625 5838 0.675522 TCCCAGGACGCGAAAAATCC 60.676 55.000 15.93 9.24 0.00 3.01
4635 5848 2.158058 CGCGAAAAATCCGAACTTGGTA 59.842 45.455 0.00 0.00 0.00 3.25
4636 5849 3.364167 CGCGAAAAATCCGAACTTGGTAA 60.364 43.478 0.00 0.00 0.00 2.85
4648 5861 1.349688 ACTTGGTAATTCCCGCTCACA 59.650 47.619 0.00 0.00 34.77 3.58
4649 5862 2.224670 ACTTGGTAATTCCCGCTCACAA 60.225 45.455 0.00 0.00 34.77 3.33
4650 5863 2.570415 TGGTAATTCCCGCTCACAAA 57.430 45.000 0.00 0.00 34.77 2.83
4651 5864 2.865079 TGGTAATTCCCGCTCACAAAA 58.135 42.857 0.00 0.00 34.77 2.44
4652 5865 2.817258 TGGTAATTCCCGCTCACAAAAG 59.183 45.455 0.00 0.00 34.77 2.27
4653 5866 3.078837 GGTAATTCCCGCTCACAAAAGA 58.921 45.455 0.00 0.00 0.00 2.52
4654 5867 3.119955 GGTAATTCCCGCTCACAAAAGAC 60.120 47.826 0.00 0.00 0.00 3.01
4655 5868 2.270352 ATTCCCGCTCACAAAAGACA 57.730 45.000 0.00 0.00 0.00 3.41
4656 5869 2.045561 TTCCCGCTCACAAAAGACAA 57.954 45.000 0.00 0.00 0.00 3.18
4657 5870 1.305201 TCCCGCTCACAAAAGACAAC 58.695 50.000 0.00 0.00 0.00 3.32
4658 5871 1.021202 CCCGCTCACAAAAGACAACA 58.979 50.000 0.00 0.00 0.00 3.33
4659 5872 1.268539 CCCGCTCACAAAAGACAACAC 60.269 52.381 0.00 0.00 0.00 3.32
4660 5873 1.400142 CCGCTCACAAAAGACAACACA 59.600 47.619 0.00 0.00 0.00 3.72
4661 5874 2.159448 CCGCTCACAAAAGACAACACAA 60.159 45.455 0.00 0.00 0.00 3.33
4662 5875 3.100817 CGCTCACAAAAGACAACACAAG 58.899 45.455 0.00 0.00 0.00 3.16
4663 5876 3.426159 CGCTCACAAAAGACAACACAAGT 60.426 43.478 0.00 0.00 0.00 3.16
4664 5877 4.098416 GCTCACAAAAGACAACACAAGTC 58.902 43.478 0.00 0.00 36.26 3.01
4665 5878 4.379394 GCTCACAAAAGACAACACAAGTCA 60.379 41.667 0.00 0.00 38.46 3.41
4666 5879 5.295431 TCACAAAAGACAACACAAGTCAG 57.705 39.130 0.00 0.00 38.46 3.51
4667 5880 4.759693 TCACAAAAGACAACACAAGTCAGT 59.240 37.500 0.00 0.00 38.46 3.41
4668 5881 5.088739 CACAAAAGACAACACAAGTCAGTC 58.911 41.667 0.00 0.00 38.46 3.51
4669 5882 5.003804 ACAAAAGACAACACAAGTCAGTCT 58.996 37.500 0.00 0.00 41.76 3.24
4670 5883 5.106555 ACAAAAGACAACACAAGTCAGTCTG 60.107 40.000 0.00 0.00 40.18 3.51
4671 5884 3.895232 AGACAACACAAGTCAGTCTGT 57.105 42.857 0.00 0.00 39.83 3.41
4672 5885 5.339008 AAGACAACACAAGTCAGTCTGTA 57.661 39.130 0.00 0.00 40.18 2.74
4673 5886 5.537300 AGACAACACAAGTCAGTCTGTAT 57.463 39.130 0.00 0.00 39.83 2.29
4674 5887 6.650427 AGACAACACAAGTCAGTCTGTATA 57.350 37.500 0.00 0.00 39.83 1.47
4675 5888 6.448006 AGACAACACAAGTCAGTCTGTATAC 58.552 40.000 0.00 0.00 39.83 1.47
4676 5889 6.265649 AGACAACACAAGTCAGTCTGTATACT 59.734 38.462 4.17 0.00 39.83 2.12
4677 5890 6.216569 ACAACACAAGTCAGTCTGTATACTG 58.783 40.000 4.17 3.79 46.78 2.74
4678 5891 4.810790 ACACAAGTCAGTCTGTATACTGC 58.189 43.478 4.17 0.88 45.34 4.40
4679 5892 4.177026 CACAAGTCAGTCTGTATACTGCC 58.823 47.826 4.17 0.00 45.34 4.85
4680 5893 3.195825 ACAAGTCAGTCTGTATACTGCCC 59.804 47.826 4.17 0.00 45.34 5.36
4681 5894 2.389715 AGTCAGTCTGTATACTGCCCC 58.610 52.381 4.17 0.00 45.34 5.80
4682 5895 1.067212 GTCAGTCTGTATACTGCCCCG 59.933 57.143 4.17 0.00 45.34 5.73
4683 5896 1.112113 CAGTCTGTATACTGCCCCGT 58.888 55.000 4.17 0.00 40.40 5.28
4684 5897 1.480954 CAGTCTGTATACTGCCCCGTT 59.519 52.381 4.17 0.00 40.40 4.44
4685 5898 2.691526 CAGTCTGTATACTGCCCCGTTA 59.308 50.000 4.17 0.00 40.40 3.18
4686 5899 2.692041 AGTCTGTATACTGCCCCGTTAC 59.308 50.000 4.17 0.00 0.00 2.50
4687 5900 2.692041 GTCTGTATACTGCCCCGTTACT 59.308 50.000 4.17 0.00 0.00 2.24
4688 5901 3.131755 GTCTGTATACTGCCCCGTTACTT 59.868 47.826 4.17 0.00 0.00 2.24
4689 5902 3.131577 TCTGTATACTGCCCCGTTACTTG 59.868 47.826 4.17 0.00 0.00 3.16
4690 5903 3.098377 TGTATACTGCCCCGTTACTTGA 58.902 45.455 4.17 0.00 0.00 3.02
4691 5904 2.981859 ATACTGCCCCGTTACTTGAG 57.018 50.000 0.00 0.00 0.00 3.02
4692 5905 1.636148 TACTGCCCCGTTACTTGAGT 58.364 50.000 0.00 0.00 0.00 3.41
4693 5906 0.763035 ACTGCCCCGTTACTTGAGTT 59.237 50.000 0.00 0.00 0.00 3.01
4694 5907 1.142262 ACTGCCCCGTTACTTGAGTTT 59.858 47.619 0.00 0.00 0.00 2.66
4695 5908 1.535462 CTGCCCCGTTACTTGAGTTTG 59.465 52.381 0.00 0.00 0.00 2.93
4696 5909 1.134037 TGCCCCGTTACTTGAGTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
4697 5910 2.104451 TGCCCCGTTACTTGAGTTTGTA 59.896 45.455 0.00 0.00 0.00 2.41
4698 5911 3.140623 GCCCCGTTACTTGAGTTTGTAA 58.859 45.455 0.00 0.00 0.00 2.41
4699 5912 3.058708 GCCCCGTTACTTGAGTTTGTAAC 60.059 47.826 0.00 0.00 42.74 2.50
4700 5913 4.383173 CCCCGTTACTTGAGTTTGTAACT 58.617 43.478 12.22 0.00 43.50 2.24
4787 6001 3.334583 AAATAGAGCGGCAGAAGTTCA 57.665 42.857 5.50 0.00 0.00 3.18
4835 6054 4.309950 GGTGTCGGCGGAGTTGGT 62.310 66.667 7.21 0.00 0.00 3.67
4905 6124 4.680237 CGGCTTCGGTGGTGCTGA 62.680 66.667 0.00 0.00 35.28 4.26
4916 6135 2.125912 GTGCTGAGCGTCGTGGAT 60.126 61.111 0.00 0.00 0.00 3.41
4988 6208 1.743252 CCTTGTCGAGGGAAGCTGC 60.743 63.158 0.00 0.00 42.26 5.25
5184 6405 2.094494 GCACCTCGATCTTCTCTTCACA 60.094 50.000 0.00 0.00 0.00 3.58
5191 6412 4.524714 TCGATCTTCTCTTCACAAAGGACT 59.475 41.667 0.00 0.00 33.03 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 185 4.344679 TGAAAATTTGACAGGTGGAAGCAT 59.655 37.500 0.00 0.00 36.26 3.79
243 246 0.179034 CCAGGGCAGAGCAATCTACC 60.179 60.000 0.00 0.00 0.00 3.18
426 429 5.530171 AGCTTTAGCATGGTAGATGTTGATG 59.470 40.000 4.57 0.00 45.16 3.07
427 430 5.688807 AGCTTTAGCATGGTAGATGTTGAT 58.311 37.500 4.57 0.00 45.16 2.57
532 538 9.612620 AAGTTGAGCTTCGTAAAATTTGATTAG 57.387 29.630 0.00 0.00 30.06 1.73
534 540 8.507470 GAAGTTGAGCTTCGTAAAATTTGATT 57.493 30.769 0.00 0.00 43.41 2.57
549 555 4.965814 TGAGATTTGTCTGAAGTTGAGCT 58.034 39.130 0.00 0.00 0.00 4.09
554 560 7.692460 TTGCATATGAGATTTGTCTGAAGTT 57.308 32.000 6.97 0.00 0.00 2.66
558 564 8.791327 TTAGTTTGCATATGAGATTTGTCTGA 57.209 30.769 6.97 0.00 0.00 3.27
577 583 9.908152 CCTCCGATCATTTTTACTTTTTAGTTT 57.092 29.630 0.00 0.00 0.00 2.66
594 600 1.704641 CATGGTACTCCCTCCGATCA 58.295 55.000 0.00 0.00 0.00 2.92
597 603 1.760875 GGCATGGTACTCCCTCCGA 60.761 63.158 0.00 0.00 0.00 4.55
600 606 2.576615 GATTTGGCATGGTACTCCCTC 58.423 52.381 0.00 0.00 0.00 4.30
655 661 1.306654 ACTATCACGGGGCCTTCCA 60.307 57.895 0.84 0.00 37.22 3.53
662 668 2.742053 CAACAAACAGACTATCACGGGG 59.258 50.000 0.00 0.00 0.00 5.73
663 669 2.159627 GCAACAAACAGACTATCACGGG 59.840 50.000 0.00 0.00 0.00 5.28
665 671 2.159841 CGGCAACAAACAGACTATCACG 60.160 50.000 0.00 0.00 0.00 4.35
685 691 4.085466 TCGTACAATTTTCTCGAACACACG 60.085 41.667 0.00 0.00 0.00 4.49
778 784 4.500477 GCATGCGAACTAGGCAATTTTAAG 59.500 41.667 0.00 0.00 44.66 1.85
905 1347 7.532571 ACCGCTTTGGATTAGTAAATGTAAAC 58.467 34.615 0.00 0.00 42.00 2.01
944 1386 3.134262 GGAGATCTTAGGGCTTTACGGTT 59.866 47.826 0.00 0.00 0.00 4.44
948 1390 3.712218 AGGTGGAGATCTTAGGGCTTTAC 59.288 47.826 0.00 0.00 0.00 2.01
982 1429 0.248866 GTGGCCGTGGTTGAAGTTTG 60.249 55.000 0.00 0.00 0.00 2.93
1418 1866 3.550431 GGGGAGATGCTGGCGCTA 61.550 66.667 7.64 0.00 36.97 4.26
1566 2014 4.120331 GCCGGCATTGCACTGGAC 62.120 66.667 24.80 2.49 0.00 4.02
1697 2148 4.377760 TCCTCTTCGTCGGGCCCT 62.378 66.667 22.43 0.00 0.00 5.19
1734 2185 3.138798 GAGGTAGCCGAGCACCGA 61.139 66.667 0.00 0.00 41.76 4.69
1821 2272 2.187946 CCTCATCACGCCCCTGAC 59.812 66.667 0.00 0.00 0.00 3.51
1862 2313 1.153628 CACCCGTTCCTCGATCACC 60.154 63.158 0.00 0.00 42.86 4.02
1865 2316 1.437986 CTCCACCCGTTCCTCGATC 59.562 63.158 0.00 0.00 42.86 3.69
2007 2458 6.509418 ACGCAATGAATAACTTACAATGGT 57.491 33.333 0.00 0.00 0.00 3.55
2100 2614 4.640771 AAAACATCTGCAAGGTCTCCTA 57.359 40.909 0.00 0.00 31.13 2.94
2146 2660 9.308318 GCCATACACTTTTTCAGACTTTTTAAA 57.692 29.630 0.00 0.00 0.00 1.52
2147 2661 7.646130 CGCCATACACTTTTTCAGACTTTTTAA 59.354 33.333 0.00 0.00 0.00 1.52
2148 2662 7.136119 CGCCATACACTTTTTCAGACTTTTTA 58.864 34.615 0.00 0.00 0.00 1.52
2151 2665 4.578928 ACGCCATACACTTTTTCAGACTTT 59.421 37.500 0.00 0.00 0.00 2.66
2153 2667 3.740115 ACGCCATACACTTTTTCAGACT 58.260 40.909 0.00 0.00 0.00 3.24
2154 2668 4.449743 TGTACGCCATACACTTTTTCAGAC 59.550 41.667 0.00 0.00 38.95 3.51
2156 2670 5.545658 ATGTACGCCATACACTTTTTCAG 57.454 39.130 0.00 0.00 46.65 3.02
2157 2671 7.618502 ATTATGTACGCCATACACTTTTTCA 57.381 32.000 0.00 0.00 46.65 2.69
2164 2711 5.987347 ACCAGTTATTATGTACGCCATACAC 59.013 40.000 0.00 0.00 46.65 2.90
2183 2730 8.043429 ACATGATACTACTAGGTACTACCAGT 57.957 38.462 8.01 10.64 41.95 4.00
2184 2731 8.921353 AACATGATACTACTAGGTACTACCAG 57.079 38.462 8.01 5.75 41.95 4.00
2185 2732 9.784531 GTAACATGATACTACTAGGTACTACCA 57.215 37.037 8.01 0.00 41.95 3.25
2220 2791 8.948853 TCGATTTGTGTTATGAAGTTTCATTC 57.051 30.769 12.17 7.46 45.13 2.67
2224 2795 9.445786 TTTTCTCGATTTGTGTTATGAAGTTTC 57.554 29.630 0.00 0.00 0.00 2.78
2228 2799 7.806690 TCCTTTTCTCGATTTGTGTTATGAAG 58.193 34.615 0.00 0.00 0.00 3.02
2241 2812 6.238484 CGAATTTGCCTATTCCTTTTCTCGAT 60.238 38.462 0.00 0.00 32.12 3.59
2251 2822 7.492344 ACATTCAAAATCGAATTTGCCTATTCC 59.508 33.333 19.02 0.00 39.57 3.01
2252 2823 8.411318 ACATTCAAAATCGAATTTGCCTATTC 57.589 30.769 19.02 0.00 39.57 1.75
2255 2826 7.094162 TGGTACATTCAAAATCGAATTTGCCTA 60.094 33.333 19.02 8.80 38.16 3.93
2325 2898 7.005902 ACATTCACATATATGCCAAATCTGGA 58.994 34.615 12.79 0.00 46.92 3.86
2329 2902 8.362639 AGGAAACATTCACATATATGCCAAATC 58.637 33.333 12.79 2.08 0.00 2.17
2353 2981 9.755064 CTTCGTTTTGTACTTATAATTGTGAGG 57.245 33.333 0.00 0.00 0.00 3.86
2398 3026 4.972751 TGCCATTGCCTCATGTATACTA 57.027 40.909 4.17 0.00 36.33 1.82
2400 3028 4.580167 TCTTTGCCATTGCCTCATGTATAC 59.420 41.667 0.00 0.00 36.33 1.47
2401 3029 4.790937 TCTTTGCCATTGCCTCATGTATA 58.209 39.130 0.00 0.00 36.33 1.47
2402 3030 3.634504 TCTTTGCCATTGCCTCATGTAT 58.365 40.909 0.00 0.00 36.33 2.29
2403 3031 3.084536 TCTTTGCCATTGCCTCATGTA 57.915 42.857 0.00 0.00 36.33 2.29
2410 3038 3.507622 GGGAGTATATCTTTGCCATTGCC 59.492 47.826 0.00 0.00 36.33 4.52
2431 3059 5.921962 TGATATGTAAGATGGATCGGAGG 57.078 43.478 0.00 0.00 0.00 4.30
2436 3064 7.065085 CCCGTTTGATGATATGTAAGATGGATC 59.935 40.741 0.00 0.00 0.00 3.36
2443 3071 7.872993 AGATACACCCGTTTGATGATATGTAAG 59.127 37.037 0.00 0.00 0.00 2.34
2447 3075 5.346011 CGAGATACACCCGTTTGATGATATG 59.654 44.000 0.00 0.00 0.00 1.78
2448 3076 5.010719 ACGAGATACACCCGTTTGATGATAT 59.989 40.000 0.00 0.00 32.03 1.63
2450 3078 3.132289 ACGAGATACACCCGTTTGATGAT 59.868 43.478 0.00 0.00 32.03 2.45
2453 3081 3.698040 AGTACGAGATACACCCGTTTGAT 59.302 43.478 0.00 0.00 37.69 2.57
2454 3082 3.084039 AGTACGAGATACACCCGTTTGA 58.916 45.455 0.00 0.00 37.69 2.69
2455 3083 3.119743 TCAGTACGAGATACACCCGTTTG 60.120 47.826 0.00 0.00 37.69 2.93
2456 3084 3.084039 TCAGTACGAGATACACCCGTTT 58.916 45.455 0.00 0.00 37.69 3.60
2459 3087 3.770263 TTTCAGTACGAGATACACCCG 57.230 47.619 0.00 0.00 36.09 5.28
2460 3088 6.746120 ACATATTTCAGTACGAGATACACCC 58.254 40.000 0.00 0.00 36.09 4.61
2484 3112 5.719563 TGTCGCCCAAATGGATATATCTAGA 59.280 40.000 12.42 0.00 37.39 2.43
2527 3155 4.081697 ACAAAAAGCAACTTGCCAGTACTT 60.082 37.500 10.25 0.00 46.52 2.24
2534 3162 3.684305 ACAAAGACAAAAAGCAACTTGCC 59.316 39.130 10.25 0.00 46.52 4.52
2594 3250 8.929487 TCACCACAAATAAGATTTACCCTTTTT 58.071 29.630 0.00 0.00 0.00 1.94
2595 3251 8.485578 TCACCACAAATAAGATTTACCCTTTT 57.514 30.769 0.00 0.00 0.00 2.27
2596 3252 8.664669 ATCACCACAAATAAGATTTACCCTTT 57.335 30.769 0.00 0.00 0.00 3.11
2597 3253 7.893302 TGATCACCACAAATAAGATTTACCCTT 59.107 33.333 0.00 0.00 0.00 3.95
2598 3254 7.410174 TGATCACCACAAATAAGATTTACCCT 58.590 34.615 0.00 0.00 0.00 4.34
2599 3255 7.639113 TGATCACCACAAATAAGATTTACCC 57.361 36.000 0.00 0.00 0.00 3.69
2606 3262 9.912634 GAAGAAAAATGATCACCACAAATAAGA 57.087 29.630 0.00 0.00 0.00 2.10
2607 3263 9.143631 GGAAGAAAAATGATCACCACAAATAAG 57.856 33.333 0.00 0.00 0.00 1.73
2608 3264 8.869109 AGGAAGAAAAATGATCACCACAAATAA 58.131 29.630 0.00 0.00 0.00 1.40
2609 3265 8.421249 AGGAAGAAAAATGATCACCACAAATA 57.579 30.769 0.00 0.00 0.00 1.40
2610 3266 7.307131 AGGAAGAAAAATGATCACCACAAAT 57.693 32.000 0.00 0.00 0.00 2.32
2611 3267 6.729690 AGGAAGAAAAATGATCACCACAAA 57.270 33.333 0.00 0.00 0.00 2.83
2612 3268 6.729690 AAGGAAGAAAAATGATCACCACAA 57.270 33.333 0.00 0.00 0.00 3.33
2613 3269 6.550854 AGAAAGGAAGAAAAATGATCACCACA 59.449 34.615 0.00 0.00 0.00 4.17
2618 3274 7.006509 AGTGGAGAAAGGAAGAAAAATGATCA 58.993 34.615 0.00 0.00 0.00 2.92
2649 3305 5.629020 CACAAACTGGGATACAATGAAAACG 59.371 40.000 0.00 0.00 39.74 3.60
2650 3306 6.744112 TCACAAACTGGGATACAATGAAAAC 58.256 36.000 0.00 0.00 39.74 2.43
2653 3309 8.642935 TTAATCACAAACTGGGATACAATGAA 57.357 30.769 0.00 0.00 40.14 2.57
2654 3310 8.642935 TTTAATCACAAACTGGGATACAATGA 57.357 30.769 0.00 0.00 40.14 2.57
2759 3416 9.859427 ATTGGTATTGTGAATGTTGATACTTTG 57.141 29.630 0.00 0.00 0.00 2.77
2954 3616 5.970592 ACTAGTAAAACCGGATGAAGTACC 58.029 41.667 9.46 0.00 0.00 3.34
2960 3626 3.703052 GGAGGACTAGTAAAACCGGATGA 59.297 47.826 9.46 0.00 0.00 2.92
3154 3834 9.745880 GGTCTATTATTCTCTCGTGTATTTGAA 57.254 33.333 0.00 0.00 0.00 2.69
3164 3844 3.574396 TGCCTGGGTCTATTATTCTCTCG 59.426 47.826 0.00 0.00 0.00 4.04
3165 3845 5.512232 CCTTGCCTGGGTCTATTATTCTCTC 60.512 48.000 0.00 0.00 0.00 3.20
3166 3846 4.349342 CCTTGCCTGGGTCTATTATTCTCT 59.651 45.833 0.00 0.00 0.00 3.10
3177 3857 1.559682 TCTATTGTCCTTGCCTGGGTC 59.440 52.381 0.00 0.00 0.00 4.46
3184 3864 5.994668 CCTAGGAGAAATCTATTGTCCTTGC 59.005 44.000 11.53 0.00 36.21 4.01
3188 3868 7.565680 TGAAACCTAGGAGAAATCTATTGTCC 58.434 38.462 17.98 0.00 0.00 4.02
3254 3967 0.255890 TTTGTAGGGCCTGAGGATGC 59.744 55.000 18.53 0.00 0.00 3.91
3257 3970 0.991920 CCTTTTGTAGGGCCTGAGGA 59.008 55.000 18.53 0.00 40.67 3.71
3293 4015 4.206477 TCTAGCTGCTGCAGAAAACATA 57.794 40.909 32.30 12.79 42.74 2.29
3326 4049 9.178758 GTGAGAACAGAAAGTTTTATATCCCAT 57.821 33.333 0.00 0.00 41.51 4.00
3328 4051 7.333672 ACGTGAGAACAGAAAGTTTTATATCCC 59.666 37.037 0.00 0.00 41.51 3.85
3342 4540 2.415491 CGATTAGGCACGTGAGAACAGA 60.415 50.000 22.23 0.00 0.00 3.41
3482 4681 2.604174 CCACTCCACCGCGTTTGAC 61.604 63.158 4.92 0.00 0.00 3.18
4085 5284 1.215655 GCTGTCGCAACGAACAGTCT 61.216 55.000 15.62 0.00 37.72 3.24
4091 5290 3.369756 CCTTTTATAGCTGTCGCAACGAA 59.630 43.478 0.00 0.00 37.72 3.85
4094 5293 4.201822 CCTTCCTTTTATAGCTGTCGCAAC 60.202 45.833 0.00 0.00 39.10 4.17
4096 5295 3.531538 CCTTCCTTTTATAGCTGTCGCA 58.468 45.455 0.00 0.00 39.10 5.10
4109 5308 4.871822 CACTATGGATTTCCCCTTCCTTT 58.128 43.478 0.00 0.00 32.95 3.11
4118 5317 1.336125 GCAGCTGCACTATGGATTTCC 59.664 52.381 33.36 0.00 41.59 3.13
4124 5323 1.871676 CATACAGCAGCTGCACTATGG 59.128 52.381 38.24 21.68 45.16 2.74
4126 5325 2.558378 CACATACAGCAGCTGCACTAT 58.442 47.619 38.24 26.97 45.16 2.12
4127 5326 2.008543 GCACATACAGCAGCTGCACTA 61.009 52.381 38.24 26.04 45.16 2.74
4128 5327 1.303799 GCACATACAGCAGCTGCACT 61.304 55.000 38.24 24.79 45.16 4.40
4132 5331 2.466982 CGGGCACATACAGCAGCTG 61.467 63.158 21.54 21.54 37.52 4.24
4178 5377 0.657312 CACACACACGTTGACTGCAT 59.343 50.000 5.01 0.00 0.00 3.96
4193 5392 3.566742 ACGATTTTACTTGTTCCCCACAC 59.433 43.478 0.00 0.00 33.98 3.82
4197 5396 2.413634 CGCACGATTTTACTTGTTCCCC 60.414 50.000 0.00 0.00 0.00 4.81
4198 5397 2.224784 ACGCACGATTTTACTTGTTCCC 59.775 45.455 0.00 0.00 0.00 3.97
4199 5398 3.531262 ACGCACGATTTTACTTGTTCC 57.469 42.857 0.00 0.00 0.00 3.62
4203 5402 3.806316 AGGAACGCACGATTTTACTTG 57.194 42.857 0.00 0.00 0.00 3.16
4230 5429 9.537192 CCACTTTATTCGATACATACAAACCTA 57.463 33.333 0.00 0.00 0.00 3.08
4233 5432 7.850982 CAGCCACTTTATTCGATACATACAAAC 59.149 37.037 0.00 0.00 0.00 2.93
4235 5434 7.011016 CACAGCCACTTTATTCGATACATACAA 59.989 37.037 0.00 0.00 0.00 2.41
4255 5457 2.110213 TGGGTTCGTCACACAGCC 59.890 61.111 0.00 0.00 31.91 4.85
4277 5482 1.290955 GTCACCATCGGTTCACGGA 59.709 57.895 0.00 0.00 44.45 4.69
4279 5484 1.014044 CAGGTCACCATCGGTTCACG 61.014 60.000 0.00 0.00 46.11 4.35
4292 5497 2.364324 GCTTACGATATGGTCCAGGTCA 59.636 50.000 0.00 0.00 0.00 4.02
4322 5532 7.608761 AGCCTTACGATATGGTTTACTCAAAAA 59.391 33.333 0.00 0.00 0.00 1.94
4323 5533 7.107542 AGCCTTACGATATGGTTTACTCAAAA 58.892 34.615 0.00 0.00 0.00 2.44
4324 5534 6.646267 AGCCTTACGATATGGTTTACTCAAA 58.354 36.000 0.00 0.00 0.00 2.69
4325 5535 6.229936 AGCCTTACGATATGGTTTACTCAA 57.770 37.500 0.00 0.00 0.00 3.02
4326 5536 5.864418 AGCCTTACGATATGGTTTACTCA 57.136 39.130 0.00 0.00 0.00 3.41
4327 5537 7.376615 ACATAGCCTTACGATATGGTTTACTC 58.623 38.462 0.00 0.00 32.36 2.59
4328 5538 7.299246 ACATAGCCTTACGATATGGTTTACT 57.701 36.000 0.00 0.00 32.36 2.24
4329 5539 8.084073 TGTACATAGCCTTACGATATGGTTTAC 58.916 37.037 0.00 0.00 32.36 2.01
4330 5540 8.180706 TGTACATAGCCTTACGATATGGTTTA 57.819 34.615 0.00 0.00 32.36 2.01
4331 5541 7.058023 TGTACATAGCCTTACGATATGGTTT 57.942 36.000 0.00 0.00 32.36 3.27
4332 5542 6.659745 TGTACATAGCCTTACGATATGGTT 57.340 37.500 0.00 0.00 32.36 3.67
4333 5543 6.852420 ATGTACATAGCCTTACGATATGGT 57.148 37.500 6.56 0.00 32.36 3.55
4334 5544 7.097192 ACAATGTACATAGCCTTACGATATGG 58.903 38.462 9.21 0.00 32.36 2.74
4335 5545 9.073368 GTACAATGTACATAGCCTTACGATATG 57.927 37.037 17.77 1.37 33.93 1.78
4336 5546 8.248945 GGTACAATGTACATAGCCTTACGATAT 58.751 37.037 23.04 0.00 0.00 1.63
4337 5547 7.231115 TGGTACAATGTACATAGCCTTACGATA 59.769 37.037 23.04 0.00 31.92 2.92
4338 5548 6.041182 TGGTACAATGTACATAGCCTTACGAT 59.959 38.462 23.04 0.00 31.92 3.73
4339 5549 5.360429 TGGTACAATGTACATAGCCTTACGA 59.640 40.000 23.04 1.64 31.92 3.43
4340 5550 5.593968 TGGTACAATGTACATAGCCTTACG 58.406 41.667 23.04 0.00 31.92 3.18
4358 5568 4.760204 GTCCATGGCCTTTGTATATGGTAC 59.240 45.833 6.96 8.57 39.39 3.34
4359 5569 4.413851 TGTCCATGGCCTTTGTATATGGTA 59.586 41.667 6.96 4.44 39.39 3.25
4360 5570 3.204158 TGTCCATGGCCTTTGTATATGGT 59.796 43.478 6.96 0.00 39.39 3.55
4361 5571 3.831323 TGTCCATGGCCTTTGTATATGG 58.169 45.455 6.96 7.02 39.66 2.74
4362 5572 7.707624 ATATTGTCCATGGCCTTTGTATATG 57.292 36.000 6.96 0.00 0.00 1.78
4363 5573 9.995594 ATTATATTGTCCATGGCCTTTGTATAT 57.004 29.630 6.96 5.87 0.00 0.86
4364 5574 9.241919 CATTATATTGTCCATGGCCTTTGTATA 57.758 33.333 6.96 2.57 0.00 1.47
4365 5575 7.949565 TCATTATATTGTCCATGGCCTTTGTAT 59.050 33.333 6.96 3.49 0.00 2.29
4366 5576 7.293828 TCATTATATTGTCCATGGCCTTTGTA 58.706 34.615 6.96 0.00 0.00 2.41
4367 5577 6.135454 TCATTATATTGTCCATGGCCTTTGT 58.865 36.000 6.96 0.00 0.00 2.83
4368 5578 6.653526 TCATTATATTGTCCATGGCCTTTG 57.346 37.500 6.96 1.15 0.00 2.77
4369 5579 6.840705 ACTTCATTATATTGTCCATGGCCTTT 59.159 34.615 6.96 0.00 0.00 3.11
4370 5580 6.266103 CACTTCATTATATTGTCCATGGCCTT 59.734 38.462 6.96 0.00 0.00 4.35
4371 5581 5.771666 CACTTCATTATATTGTCCATGGCCT 59.228 40.000 6.96 0.00 0.00 5.19
4372 5582 5.565439 GCACTTCATTATATTGTCCATGGCC 60.565 44.000 6.96 0.00 0.00 5.36
4373 5583 5.242393 AGCACTTCATTATATTGTCCATGGC 59.758 40.000 6.96 2.72 0.00 4.40
4374 5584 6.889301 AGCACTTCATTATATTGTCCATGG 57.111 37.500 4.97 4.97 0.00 3.66
4375 5585 9.276590 TCTAAGCACTTCATTATATTGTCCATG 57.723 33.333 0.00 0.00 0.00 3.66
4376 5586 9.499479 CTCTAAGCACTTCATTATATTGTCCAT 57.501 33.333 0.00 0.00 0.00 3.41
4377 5587 8.704668 TCTCTAAGCACTTCATTATATTGTCCA 58.295 33.333 0.00 0.00 0.00 4.02
4378 5588 9.202273 CTCTCTAAGCACTTCATTATATTGTCC 57.798 37.037 0.00 0.00 0.00 4.02
4379 5589 9.973450 TCTCTCTAAGCACTTCATTATATTGTC 57.027 33.333 0.00 0.00 0.00 3.18
4382 5592 9.434420 GCATCTCTCTAAGCACTTCATTATATT 57.566 33.333 0.00 0.00 0.00 1.28
4383 5593 8.814931 AGCATCTCTCTAAGCACTTCATTATAT 58.185 33.333 0.00 0.00 0.00 0.86
4384 5594 8.187913 AGCATCTCTCTAAGCACTTCATTATA 57.812 34.615 0.00 0.00 0.00 0.98
4385 5595 7.065120 AGCATCTCTCTAAGCACTTCATTAT 57.935 36.000 0.00 0.00 0.00 1.28
4386 5596 6.477053 AGCATCTCTCTAAGCACTTCATTA 57.523 37.500 0.00 0.00 0.00 1.90
4387 5597 5.356291 AGCATCTCTCTAAGCACTTCATT 57.644 39.130 0.00 0.00 0.00 2.57
4388 5598 5.356291 AAGCATCTCTCTAAGCACTTCAT 57.644 39.130 0.00 0.00 0.00 2.57
4389 5599 4.815533 AAGCATCTCTCTAAGCACTTCA 57.184 40.909 0.00 0.00 0.00 3.02
4390 5600 7.602517 TTTAAAGCATCTCTCTAAGCACTTC 57.397 36.000 0.00 0.00 0.00 3.01
4391 5601 7.986085 TTTTAAAGCATCTCTCTAAGCACTT 57.014 32.000 0.00 0.00 0.00 3.16
4392 5602 9.672673 TTATTTTAAAGCATCTCTCTAAGCACT 57.327 29.630 0.00 0.00 0.00 4.40
4393 5603 9.709600 GTTATTTTAAAGCATCTCTCTAAGCAC 57.290 33.333 0.00 0.00 0.00 4.40
4394 5604 8.604035 CGTTATTTTAAAGCATCTCTCTAAGCA 58.396 33.333 0.00 0.00 0.00 3.91
4395 5605 8.064814 CCGTTATTTTAAAGCATCTCTCTAAGC 58.935 37.037 0.00 0.00 0.00 3.09
4396 5606 9.314321 TCCGTTATTTTAAAGCATCTCTCTAAG 57.686 33.333 0.00 0.00 0.00 2.18
4397 5607 9.661563 TTCCGTTATTTTAAAGCATCTCTCTAA 57.338 29.630 0.00 0.00 0.00 2.10
4398 5608 9.661563 TTTCCGTTATTTTAAAGCATCTCTCTA 57.338 29.630 0.00 0.00 0.00 2.43
4399 5609 8.561738 TTTCCGTTATTTTAAAGCATCTCTCT 57.438 30.769 0.00 0.00 0.00 3.10
4400 5610 9.226345 CATTTCCGTTATTTTAAAGCATCTCTC 57.774 33.333 0.00 0.00 0.00 3.20
4401 5611 8.956426 TCATTTCCGTTATTTTAAAGCATCTCT 58.044 29.630 0.00 0.00 0.00 3.10
4402 5612 9.736023 ATCATTTCCGTTATTTTAAAGCATCTC 57.264 29.630 0.00 0.00 0.00 2.75
4409 5619 9.589111 GGCCTTTATCATTTCCGTTATTTTAAA 57.411 29.630 0.00 0.00 0.00 1.52
4410 5620 7.916450 CGGCCTTTATCATTTCCGTTATTTTAA 59.084 33.333 0.00 0.00 32.93 1.52
4411 5621 7.282675 TCGGCCTTTATCATTTCCGTTATTTTA 59.717 33.333 0.00 0.00 38.18 1.52
4412 5622 6.095720 TCGGCCTTTATCATTTCCGTTATTTT 59.904 34.615 0.00 0.00 38.18 1.82
4413 5623 5.591067 TCGGCCTTTATCATTTCCGTTATTT 59.409 36.000 0.00 0.00 38.18 1.40
4414 5624 5.127491 TCGGCCTTTATCATTTCCGTTATT 58.873 37.500 0.00 0.00 38.18 1.40
4415 5625 4.710324 TCGGCCTTTATCATTTCCGTTAT 58.290 39.130 0.00 0.00 38.18 1.89
4416 5626 4.139859 TCGGCCTTTATCATTTCCGTTA 57.860 40.909 0.00 0.00 38.18 3.18
4417 5627 2.993937 TCGGCCTTTATCATTTCCGTT 58.006 42.857 0.00 0.00 38.18 4.44
4418 5628 2.681344 GTTCGGCCTTTATCATTTCCGT 59.319 45.455 0.00 0.00 38.18 4.69
4419 5629 2.286184 CGTTCGGCCTTTATCATTTCCG 60.286 50.000 0.00 0.00 38.34 4.30
4420 5630 2.032924 CCGTTCGGCCTTTATCATTTCC 59.967 50.000 0.00 0.00 0.00 3.13
4421 5631 2.681344 ACCGTTCGGCCTTTATCATTTC 59.319 45.455 11.32 0.00 0.00 2.17
4422 5632 2.681344 GACCGTTCGGCCTTTATCATTT 59.319 45.455 11.32 0.00 0.00 2.32
4423 5633 2.285977 GACCGTTCGGCCTTTATCATT 58.714 47.619 11.32 0.00 0.00 2.57
4424 5634 1.208535 TGACCGTTCGGCCTTTATCAT 59.791 47.619 11.32 0.00 0.00 2.45
4425 5635 0.609151 TGACCGTTCGGCCTTTATCA 59.391 50.000 11.32 3.75 0.00 2.15
4426 5636 1.134907 TCTGACCGTTCGGCCTTTATC 60.135 52.381 11.32 1.12 0.00 1.75
4427 5637 0.899720 TCTGACCGTTCGGCCTTTAT 59.100 50.000 11.32 0.00 0.00 1.40
4428 5638 0.899720 ATCTGACCGTTCGGCCTTTA 59.100 50.000 11.32 0.00 0.00 1.85
4429 5639 0.036306 AATCTGACCGTTCGGCCTTT 59.964 50.000 11.32 0.00 0.00 3.11
4430 5640 0.036306 AAATCTGACCGTTCGGCCTT 59.964 50.000 11.32 0.00 0.00 4.35
4431 5641 0.391263 GAAATCTGACCGTTCGGCCT 60.391 55.000 11.32 0.00 0.00 5.19
4432 5642 0.391263 AGAAATCTGACCGTTCGGCC 60.391 55.000 11.32 0.31 0.00 6.13
4433 5643 0.721718 CAGAAATCTGACCGTTCGGC 59.278 55.000 11.32 5.11 46.59 5.54
4434 5644 1.359848 CCAGAAATCTGACCGTTCGG 58.640 55.000 11.94 9.81 46.59 4.30
4435 5645 0.721718 GCCAGAAATCTGACCGTTCG 59.278 55.000 11.94 0.00 46.59 3.95
4436 5646 1.808411 TGCCAGAAATCTGACCGTTC 58.192 50.000 11.94 0.00 46.59 3.95
4437 5647 2.026822 AGATGCCAGAAATCTGACCGTT 60.027 45.455 11.94 0.00 46.59 4.44
4438 5648 1.556911 AGATGCCAGAAATCTGACCGT 59.443 47.619 11.94 4.13 46.59 4.83
4439 5649 2.208431 GAGATGCCAGAAATCTGACCG 58.792 52.381 11.94 0.00 46.59 4.79
4440 5650 2.208431 CGAGATGCCAGAAATCTGACC 58.792 52.381 11.94 3.52 46.59 4.02
4441 5651 2.208431 CCGAGATGCCAGAAATCTGAC 58.792 52.381 11.94 0.64 46.59 3.51
4442 5652 1.473965 GCCGAGATGCCAGAAATCTGA 60.474 52.381 11.94 0.00 46.59 3.27
4443 5653 0.942962 GCCGAGATGCCAGAAATCTG 59.057 55.000 3.37 3.37 43.40 2.90
4444 5654 0.835941 AGCCGAGATGCCAGAAATCT 59.164 50.000 0.00 0.00 37.09 2.40
4445 5655 1.224965 GAGCCGAGATGCCAGAAATC 58.775 55.000 0.00 0.00 0.00 2.17
4446 5656 0.531532 CGAGCCGAGATGCCAGAAAT 60.532 55.000 0.00 0.00 0.00 2.17
4447 5657 1.153568 CGAGCCGAGATGCCAGAAA 60.154 57.895 0.00 0.00 0.00 2.52
4448 5658 1.604147 TTCGAGCCGAGATGCCAGAA 61.604 55.000 0.00 0.00 37.14 3.02
4449 5659 2.052104 TTCGAGCCGAGATGCCAGA 61.052 57.895 0.00 0.00 37.14 3.86
4450 5660 1.880340 GTTCGAGCCGAGATGCCAG 60.880 63.158 0.00 0.00 37.14 4.85
4451 5661 2.184322 GTTCGAGCCGAGATGCCA 59.816 61.111 0.00 0.00 37.14 4.92
4452 5662 2.956964 CGTTCGAGCCGAGATGCC 60.957 66.667 0.72 0.00 37.14 4.40
4453 5663 3.621394 GCGTTCGAGCCGAGATGC 61.621 66.667 10.32 0.00 37.14 3.91
4461 5671 2.202676 CAGAGAGGGCGTTCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
4462 5672 0.734253 CAACAGAGAGGGCGTTCGAG 60.734 60.000 0.00 0.00 0.00 4.04
4463 5673 1.289066 CAACAGAGAGGGCGTTCGA 59.711 57.895 0.00 0.00 0.00 3.71
4464 5674 0.600255 AACAACAGAGAGGGCGTTCG 60.600 55.000 0.00 0.00 0.00 3.95
4465 5675 2.067013 GTAACAACAGAGAGGGCGTTC 58.933 52.381 0.00 0.00 0.00 3.95
4466 5676 1.692519 AGTAACAACAGAGAGGGCGTT 59.307 47.619 0.00 0.00 0.00 4.84
4467 5677 1.272769 GAGTAACAACAGAGAGGGCGT 59.727 52.381 0.00 0.00 0.00 5.68
4468 5678 1.732732 CGAGTAACAACAGAGAGGGCG 60.733 57.143 0.00 0.00 0.00 6.13
4469 5679 1.272769 ACGAGTAACAACAGAGAGGGC 59.727 52.381 0.00 0.00 0.00 5.19
4470 5680 3.662247 AACGAGTAACAACAGAGAGGG 57.338 47.619 0.00 0.00 0.00 4.30
4471 5681 5.624344 TCTAACGAGTAACAACAGAGAGG 57.376 43.478 0.00 0.00 0.00 3.69
4472 5682 6.843208 TGATCTAACGAGTAACAACAGAGAG 58.157 40.000 0.00 0.00 0.00 3.20
4473 5683 6.812879 TGATCTAACGAGTAACAACAGAGA 57.187 37.500 0.00 0.00 0.00 3.10
4474 5684 7.476667 AGATGATCTAACGAGTAACAACAGAG 58.523 38.462 0.00 0.00 0.00 3.35
4475 5685 7.392494 AGATGATCTAACGAGTAACAACAGA 57.608 36.000 0.00 0.00 0.00 3.41
4476 5686 6.693545 GGAGATGATCTAACGAGTAACAACAG 59.306 42.308 0.00 0.00 0.00 3.16
4477 5687 6.152154 TGGAGATGATCTAACGAGTAACAACA 59.848 38.462 0.00 0.00 0.00 3.33
4478 5688 6.561614 TGGAGATGATCTAACGAGTAACAAC 58.438 40.000 0.00 0.00 0.00 3.32
4479 5689 6.680625 GCTGGAGATGATCTAACGAGTAACAA 60.681 42.308 0.00 0.00 0.00 2.83
4480 5690 5.221067 GCTGGAGATGATCTAACGAGTAACA 60.221 44.000 0.00 0.00 0.00 2.41
4481 5691 5.216648 GCTGGAGATGATCTAACGAGTAAC 58.783 45.833 0.00 0.00 0.00 2.50
4482 5692 4.278669 GGCTGGAGATGATCTAACGAGTAA 59.721 45.833 0.00 0.00 0.00 2.24
4483 5693 3.821600 GGCTGGAGATGATCTAACGAGTA 59.178 47.826 0.00 0.00 0.00 2.59
4484 5694 2.625790 GGCTGGAGATGATCTAACGAGT 59.374 50.000 0.00 0.00 0.00 4.18
4485 5695 2.351253 CGGCTGGAGATGATCTAACGAG 60.351 54.545 0.00 0.00 0.00 4.18
4488 5698 3.385577 GAACGGCTGGAGATGATCTAAC 58.614 50.000 0.00 0.00 0.00 2.34
4494 5704 2.892640 CCGAACGGCTGGAGATGA 59.107 61.111 0.00 0.00 0.00 2.92
4542 5754 1.080025 GAACTAGTGCCGGTTCGCT 60.080 57.895 1.90 1.19 33.69 4.93
4606 5819 0.675522 GGATTTTTCGCGTCCTGGGA 60.676 55.000 5.77 0.00 37.84 4.37
4609 5822 0.793861 TTCGGATTTTTCGCGTCCTG 59.206 50.000 5.77 2.29 0.00 3.86
4624 5837 0.730840 GCGGGAATTACCAAGTTCGG 59.269 55.000 7.68 0.00 41.20 4.30
4625 5838 1.664151 GAGCGGGAATTACCAAGTTCG 59.336 52.381 7.68 0.00 41.20 3.95
4635 5848 2.582052 TGTCTTTTGTGAGCGGGAATT 58.418 42.857 0.00 0.00 0.00 2.17
4636 5849 2.270352 TGTCTTTTGTGAGCGGGAAT 57.730 45.000 0.00 0.00 0.00 3.01
4648 5861 5.003804 ACAGACTGACTTGTGTTGTCTTTT 58.996 37.500 10.08 0.00 37.81 2.27
4649 5862 4.579869 ACAGACTGACTTGTGTTGTCTTT 58.420 39.130 10.08 0.00 37.81 2.52
4650 5863 4.207891 ACAGACTGACTTGTGTTGTCTT 57.792 40.909 10.08 0.00 37.81 3.01
4651 5864 3.895232 ACAGACTGACTTGTGTTGTCT 57.105 42.857 10.08 0.00 39.22 3.41
4652 5865 6.448006 AGTATACAGACTGACTTGTGTTGTC 58.552 40.000 10.08 0.00 33.42 3.18
4653 5866 6.406692 AGTATACAGACTGACTTGTGTTGT 57.593 37.500 10.08 0.00 0.00 3.32
4665 5878 1.861982 AACGGGGCAGTATACAGACT 58.138 50.000 5.50 0.00 0.00 3.24
4666 5879 2.692041 AGTAACGGGGCAGTATACAGAC 59.308 50.000 5.50 0.00 0.00 3.51
4667 5880 3.022557 AGTAACGGGGCAGTATACAGA 57.977 47.619 5.50 0.00 0.00 3.41
4668 5881 3.131577 TCAAGTAACGGGGCAGTATACAG 59.868 47.826 5.50 0.00 0.00 2.74
4669 5882 3.098377 TCAAGTAACGGGGCAGTATACA 58.902 45.455 5.50 0.00 0.00 2.29
4670 5883 3.131755 ACTCAAGTAACGGGGCAGTATAC 59.868 47.826 0.00 0.00 0.00 1.47
4671 5884 3.368248 ACTCAAGTAACGGGGCAGTATA 58.632 45.455 0.00 0.00 0.00 1.47
4672 5885 2.185387 ACTCAAGTAACGGGGCAGTAT 58.815 47.619 0.00 0.00 0.00 2.12
4673 5886 1.636148 ACTCAAGTAACGGGGCAGTA 58.364 50.000 0.00 0.00 0.00 2.74
4674 5887 0.763035 AACTCAAGTAACGGGGCAGT 59.237 50.000 0.00 0.00 0.00 4.40
4675 5888 1.535462 CAAACTCAAGTAACGGGGCAG 59.465 52.381 0.00 0.00 0.00 4.85
4676 5889 1.134037 ACAAACTCAAGTAACGGGGCA 60.134 47.619 0.00 0.00 0.00 5.36
4677 5890 1.601166 ACAAACTCAAGTAACGGGGC 58.399 50.000 0.00 0.00 0.00 5.80
4678 5891 4.737353 GTTACAAACTCAAGTAACGGGG 57.263 45.455 0.00 0.00 40.21 5.73
4717 5930 0.661020 CCGACTTGTGGCGTCTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
4820 6039 3.542676 ACACCAACTCCGCCGACA 61.543 61.111 0.00 0.00 0.00 4.35
4988 6208 2.587194 CGCGGCCTCATCCTGAAG 60.587 66.667 0.00 0.00 0.00 3.02
5171 6392 4.322567 GCAGTCCTTTGTGAAGAGAAGAT 58.677 43.478 0.00 0.00 34.71 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.