Multiple sequence alignment - TraesCS5A01G268700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G268700 chr5A 100.000 4181 0 0 1 4181 479398644 479394464 0.000000e+00 7721.0
1 TraesCS5A01G268700 chr5A 80.325 615 96 21 2575 3179 479237179 479236580 3.840000e-120 442.0
2 TraesCS5A01G268700 chr5A 80.321 498 86 10 2686 3181 479403895 479403408 2.380000e-97 366.0
3 TraesCS5A01G268700 chr5A 84.119 403 39 18 1011 1401 479408734 479408345 2.380000e-97 366.0
4 TraesCS5A01G268700 chr5A 82.885 409 49 17 983 1389 479239846 479239457 8.600000e-92 348.0
5 TraesCS5A01G268700 chr5A 81.868 364 50 6 1585 1940 479238146 479237791 4.090000e-75 292.0
6 TraesCS5A01G268700 chr5A 86.207 203 28 0 2066 2268 479237460 479237258 1.960000e-53 220.0
7 TraesCS5A01G268700 chr5A 92.806 139 8 2 989 1125 480090011 480089873 2.550000e-47 200.0
8 TraesCS5A01G268700 chr5B 92.958 1775 93 19 617 2371 454897617 454895855 0.000000e+00 2556.0
9 TraesCS5A01G268700 chr5B 94.654 823 40 3 2428 3247 454895838 454895017 0.000000e+00 1273.0
10 TraesCS5A01G268700 chr5B 81.310 519 65 14 2686 3181 454901012 454900503 3.920000e-105 392.0
11 TraesCS5A01G268700 chr5B 83.841 427 43 18 983 1401 455147810 455147402 2.360000e-102 383.0
12 TraesCS5A01G268700 chr5B 80.691 492 68 12 2686 3156 455146174 455145689 1.430000e-94 357.0
13 TraesCS5A01G268700 chr5B 85.174 344 30 13 1065 1401 454903088 454902759 2.410000e-87 333.0
14 TraesCS5A01G268700 chr5B 90.830 229 21 0 1645 1873 455147322 455147094 1.460000e-79 307.0
15 TraesCS5A01G268700 chr5B 89.583 240 24 1 1645 1883 454902379 454902140 1.890000e-78 303.0
16 TraesCS5A01G268700 chr5B 91.429 210 15 2 3431 3637 454895003 454894794 6.840000e-73 285.0
17 TraesCS5A01G268700 chr5B 85.305 279 35 3 1616 1892 454691222 454690948 2.460000e-72 283.0
18 TraesCS5A01G268700 chr5D 93.528 1715 77 13 661 2371 379220429 379218745 0.000000e+00 2521.0
19 TraesCS5A01G268700 chr5D 93.127 1164 57 10 2509 3656 379218675 379217519 0.000000e+00 1685.0
20 TraesCS5A01G268700 chr5D 81.282 577 83 14 2614 3168 379130634 379130061 1.070000e-120 444.0
21 TraesCS5A01G268700 chr5D 81.467 518 65 12 2686 3181 379227579 379227071 3.030000e-106 396.0
22 TraesCS5A01G268700 chr5D 83.568 426 51 14 972 1393 379251427 379251017 8.480000e-102 381.0
23 TraesCS5A01G268700 chr5D 89.037 301 32 1 3881 4181 422935811 422936110 5.100000e-99 372.0
24 TraesCS5A01G268700 chr5D 81.174 494 62 16 2686 3156 379249765 379249280 6.600000e-98 368.0
25 TraesCS5A01G268700 chr5D 83.250 400 45 14 1010 1401 379229725 379229340 8.600000e-92 348.0
26 TraesCS5A01G268700 chr5D 91.071 224 20 0 1651 1874 379228936 379228713 1.890000e-78 303.0
27 TraesCS5A01G268700 chr5D 90.000 230 22 1 1645 1873 379250952 379250723 3.160000e-76 296.0
28 TraesCS5A01G268700 chr5D 85.586 222 32 0 2066 2287 379130953 379130732 2.510000e-57 233.0
29 TraesCS5A01G268700 chr5D 88.205 195 21 2 1208 1401 379133652 379133459 9.040000e-57 231.0
30 TraesCS5A01G268700 chr5D 96.124 129 5 0 996 1124 379387316 379387188 1.180000e-50 211.0
31 TraesCS5A01G268700 chr5D 94.074 135 8 0 984 1118 379133851 379133717 5.480000e-49 206.0
32 TraesCS5A01G268700 chr5D 96.774 62 1 1 2428 2488 379218728 379218667 7.400000e-18 102.0
33 TraesCS5A01G268700 chr2D 94.937 553 27 1 1 552 562356473 562357025 0.000000e+00 865.0
34 TraesCS5A01G268700 chr7D 94.585 554 26 4 1 553 192077274 192076724 0.000000e+00 854.0
35 TraesCS5A01G268700 chr7D 91.033 368 32 1 3809 4176 572417161 572417527 2.900000e-136 496.0
36 TraesCS5A01G268700 chr2B 94.585 554 27 3 1 553 67087267 67087818 0.000000e+00 854.0
37 TraesCS5A01G268700 chr2B 94.129 528 29 2 26 552 420177666 420178192 0.000000e+00 802.0
38 TraesCS5A01G268700 chr2B 100.000 30 0 0 1 30 420165473 420165502 5.840000e-04 56.5
39 TraesCS5A01G268700 chr6D 94.245 556 28 3 1 553 386434849 386434295 0.000000e+00 846.0
40 TraesCS5A01G268700 chr1B 94.213 553 31 1 1 552 558512688 558513240 0.000000e+00 843.0
41 TraesCS5A01G268700 chr4D 94.915 531 26 1 1 530 95049470 95050000 0.000000e+00 830.0
42 TraesCS5A01G268700 chr4B 92.553 564 37 3 1 563 55316875 55316316 0.000000e+00 804.0
43 TraesCS5A01G268700 chr4B 92.948 553 31 2 1 552 63941321 63940776 0.000000e+00 798.0
44 TraesCS5A01G268700 chr6B 91.667 372 29 2 3809 4180 504566341 504565972 8.020000e-142 514.0
45 TraesCS5A01G268700 chr1A 84.615 442 39 18 972 1401 586720538 586720114 3.010000e-111 412.0
46 TraesCS5A01G268700 chr1A 81.781 494 56 19 2687 3156 586718469 586717986 2.360000e-102 383.0
47 TraesCS5A01G268700 chr1A 91.703 229 19 0 1645 1873 586720043 586719815 6.750000e-83 318.0
48 TraesCS5A01G268700 chr2A 81.633 147 17 6 3808 3952 440914506 440914644 3.420000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G268700 chr5A 479394464 479398644 4180 True 7721.000000 7721 100.000000 1 4181 1 chr5A.!!$R1 4180
1 TraesCS5A01G268700 chr5A 479236580 479239846 3266 True 325.500000 442 82.821250 983 3179 4 chr5A.!!$R5 2196
2 TraesCS5A01G268700 chr5B 454894794 454903088 8294 True 857.000000 2556 89.184667 617 3637 6 chr5B.!!$R2 3020
3 TraesCS5A01G268700 chr5B 455145689 455147810 2121 True 349.000000 383 85.120667 983 3156 3 chr5B.!!$R3 2173
4 TraesCS5A01G268700 chr5D 379217519 379220429 2910 True 1436.000000 2521 94.476333 661 3656 3 chr5D.!!$R3 2995
5 TraesCS5A01G268700 chr5D 379227071 379229725 2654 True 349.000000 396 85.262667 1010 3181 3 chr5D.!!$R4 2171
6 TraesCS5A01G268700 chr5D 379249280 379251427 2147 True 348.333333 381 84.914000 972 3156 3 chr5D.!!$R5 2184
7 TraesCS5A01G268700 chr5D 379130061 379133851 3790 True 278.500000 444 87.286750 984 3168 4 chr5D.!!$R2 2184
8 TraesCS5A01G268700 chr2D 562356473 562357025 552 False 865.000000 865 94.937000 1 552 1 chr2D.!!$F1 551
9 TraesCS5A01G268700 chr7D 192076724 192077274 550 True 854.000000 854 94.585000 1 553 1 chr7D.!!$R1 552
10 TraesCS5A01G268700 chr2B 67087267 67087818 551 False 854.000000 854 94.585000 1 553 1 chr2B.!!$F1 552
11 TraesCS5A01G268700 chr2B 420177666 420178192 526 False 802.000000 802 94.129000 26 552 1 chr2B.!!$F3 526
12 TraesCS5A01G268700 chr6D 386434295 386434849 554 True 846.000000 846 94.245000 1 553 1 chr6D.!!$R1 552
13 TraesCS5A01G268700 chr1B 558512688 558513240 552 False 843.000000 843 94.213000 1 552 1 chr1B.!!$F1 551
14 TraesCS5A01G268700 chr4D 95049470 95050000 530 False 830.000000 830 94.915000 1 530 1 chr4D.!!$F1 529
15 TraesCS5A01G268700 chr4B 55316316 55316875 559 True 804.000000 804 92.553000 1 563 1 chr4B.!!$R1 562
16 TraesCS5A01G268700 chr4B 63940776 63941321 545 True 798.000000 798 92.948000 1 552 1 chr4B.!!$R2 551
17 TraesCS5A01G268700 chr1A 586717986 586720538 2552 True 371.000000 412 86.033000 972 3156 3 chr1A.!!$R1 2184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 602 0.040425 ATCTGCCGTGTCAAAAACGC 60.040 50.0 0.0 0.0 39.69 4.84 F
1370 6264 0.038159 CGTCCCTGCGGATAAGATCC 60.038 60.0 0.0 0.0 46.22 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2416 9733 0.690192 TGTTCGAGCCCATCCAAAGA 59.310 50.000 0.0 0.0 0.0 2.52 R
3273 10961 1.066303 GGTCTCCACTCGCATCACTAG 59.934 57.143 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 1.967066 CTCCTCTTCAGATGCCGGTAT 59.033 52.381 4.04 4.04 0.00 2.73
223 232 0.307760 CACGGTCAACCAAAGAGTGC 59.692 55.000 0.00 0.00 35.14 4.40
238 248 2.364186 TGCTGGATCGGGCTCTCA 60.364 61.111 9.37 0.00 0.00 3.27
246 256 2.554344 GGATCGGGCTCTCAGACTCTAT 60.554 54.545 0.00 0.00 0.00 1.98
291 301 1.786937 ACCCTCTCTATGCTCACCTG 58.213 55.000 0.00 0.00 0.00 4.00
329 339 0.247736 AAGGAACGCTCGCATCTTCT 59.752 50.000 0.00 0.00 0.00 2.85
392 402 3.795688 AGATTGAGGCTCAAACTTGGA 57.204 42.857 31.57 9.67 40.12 3.53
455 467 3.828451 AGAGTACGCCTTTTGTAGTGGTA 59.172 43.478 0.00 0.00 0.00 3.25
548 560 3.384789 AGTCTTTTGCCTCCTTCCAAAAC 59.615 43.478 0.00 0.00 36.38 2.43
553 565 3.749665 TGCCTCCTTCCAAAACAAATG 57.250 42.857 0.00 0.00 0.00 2.32
556 568 4.837860 TGCCTCCTTCCAAAACAAATGTAT 59.162 37.500 0.00 0.00 0.00 2.29
557 569 6.013379 TGCCTCCTTCCAAAACAAATGTATA 58.987 36.000 0.00 0.00 0.00 1.47
558 570 6.495181 TGCCTCCTTCCAAAACAAATGTATAA 59.505 34.615 0.00 0.00 0.00 0.98
560 572 7.875554 GCCTCCTTCCAAAACAAATGTATAAAA 59.124 33.333 0.00 0.00 0.00 1.52
577 589 9.717942 ATGTATAAAATACTCTCTTCATCTGCC 57.282 33.333 0.00 0.00 0.00 4.85
580 592 3.724508 ATACTCTCTTCATCTGCCGTG 57.275 47.619 0.00 0.00 0.00 4.94
581 593 1.261480 ACTCTCTTCATCTGCCGTGT 58.739 50.000 0.00 0.00 0.00 4.49
582 594 1.203523 ACTCTCTTCATCTGCCGTGTC 59.796 52.381 0.00 0.00 0.00 3.67
584 596 1.618343 TCTCTTCATCTGCCGTGTCAA 59.382 47.619 0.00 0.00 0.00 3.18
586 598 2.807967 CTCTTCATCTGCCGTGTCAAAA 59.192 45.455 0.00 0.00 0.00 2.44
587 599 3.210227 TCTTCATCTGCCGTGTCAAAAA 58.790 40.909 0.00 0.00 0.00 1.94
588 600 3.003275 TCTTCATCTGCCGTGTCAAAAAC 59.997 43.478 0.00 0.00 0.00 2.43
589 601 1.262950 TCATCTGCCGTGTCAAAAACG 59.737 47.619 0.00 0.00 40.70 3.60
590 602 0.040425 ATCTGCCGTGTCAAAAACGC 60.040 50.000 0.00 0.00 39.69 4.84
600 612 5.342330 GTGTCAAAAACGCGCTTATATTG 57.658 39.130 5.73 2.04 0.00 1.90
601 613 5.083389 GTGTCAAAAACGCGCTTATATTGA 58.917 37.500 5.73 4.77 0.00 2.57
602 614 5.225129 GTGTCAAAAACGCGCTTATATTGAG 59.775 40.000 5.73 0.00 0.00 3.02
603 615 5.120986 TGTCAAAAACGCGCTTATATTGAGA 59.879 36.000 5.73 3.35 0.00 3.27
604 616 6.183360 TGTCAAAAACGCGCTTATATTGAGAT 60.183 34.615 5.73 0.00 0.00 2.75
605 617 6.139169 GTCAAAAACGCGCTTATATTGAGATG 59.861 38.462 5.73 0.00 0.00 2.90
606 618 4.732285 AAACGCGCTTATATTGAGATGG 57.268 40.909 5.73 0.00 0.00 3.51
607 619 3.660501 ACGCGCTTATATTGAGATGGA 57.339 42.857 5.73 0.00 0.00 3.41
608 620 3.579709 ACGCGCTTATATTGAGATGGAG 58.420 45.455 5.73 0.00 0.00 3.86
609 621 2.926200 CGCGCTTATATTGAGATGGAGG 59.074 50.000 5.56 0.00 0.00 4.30
611 623 3.055819 GCGCTTATATTGAGATGGAGGGA 60.056 47.826 0.00 0.00 0.00 4.20
612 624 4.753233 CGCTTATATTGAGATGGAGGGAG 58.247 47.826 0.00 0.00 0.00 4.30
613 625 4.221703 CGCTTATATTGAGATGGAGGGAGT 59.778 45.833 0.00 0.00 0.00 3.85
614 626 5.419155 CGCTTATATTGAGATGGAGGGAGTA 59.581 44.000 0.00 0.00 0.00 2.59
615 627 6.405286 CGCTTATATTGAGATGGAGGGAGTAG 60.405 46.154 0.00 0.00 0.00 2.57
616 628 6.665680 GCTTATATTGAGATGGAGGGAGTAGA 59.334 42.308 0.00 0.00 0.00 2.59
618 630 8.657387 TTATATTGAGATGGAGGGAGTAGAAG 57.343 38.462 0.00 0.00 0.00 2.85
619 631 4.609866 TTGAGATGGAGGGAGTAGAAGA 57.390 45.455 0.00 0.00 0.00 2.87
620 632 4.823364 TGAGATGGAGGGAGTAGAAGAT 57.177 45.455 0.00 0.00 0.00 2.40
621 633 4.478203 TGAGATGGAGGGAGTAGAAGATG 58.522 47.826 0.00 0.00 0.00 2.90
623 635 4.889780 AGATGGAGGGAGTAGAAGATGTT 58.110 43.478 0.00 0.00 0.00 2.71
625 637 4.338795 TGGAGGGAGTAGAAGATGTTCT 57.661 45.455 10.33 10.33 45.48 3.01
626 638 4.689062 TGGAGGGAGTAGAAGATGTTCTT 58.311 43.478 10.78 0.00 40.35 2.52
675 5531 8.196771 ACAATAGAACAACATGTCAACACAATT 58.803 29.630 0.00 0.00 35.64 2.32
716 5580 6.414235 GCGTAGTGCATGACTGGTAACAAC 62.414 50.000 0.00 0.00 46.80 3.32
861 5725 5.585047 GTCTTTGTTAGGTCTCGGCATAATT 59.415 40.000 0.00 0.00 0.00 1.40
919 5783 1.605712 GCTAGTGGCTCGACAAAGTGT 60.606 52.381 0.00 0.00 38.06 3.55
1176 6063 2.302260 CTCTATTCTCCGTCCTGCTCA 58.698 52.381 0.00 0.00 0.00 4.26
1370 6264 0.038159 CGTCCCTGCGGATAAGATCC 60.038 60.000 0.00 0.00 46.22 3.36
1394 6293 2.766828 GACCCTGAGGCTAGTACACATT 59.233 50.000 0.00 0.00 36.11 2.71
1401 6300 3.846360 AGGCTAGTACACATTTGTCGAC 58.154 45.455 9.11 9.11 37.15 4.20
1459 6461 8.928733 CATTAGGGAATTGTTCAACTGAATTTG 58.071 33.333 0.00 0.00 36.33 2.32
1466 6469 4.440880 TGTTCAACTGAATTTGGGCTTTG 58.559 39.130 0.00 0.00 36.33 2.77
1511 6842 9.148104 TCGATGCAGAGATTAATTTATCATCTG 57.852 33.333 19.00 19.00 35.38 2.90
1615 7911 3.325870 TGCTGAGACGATTACAACTTGG 58.674 45.455 0.00 0.00 0.00 3.61
1627 7923 6.799925 CGATTACAACTTGGTGTTATTGGAAC 59.200 38.462 0.00 0.00 37.07 3.62
1729 8028 5.448632 GGGCACCGTAAATATTCTTGAAGTG 60.449 44.000 0.00 0.00 40.86 3.16
2076 9176 2.610727 GCAGCGTCTGAGGACTAAGTTT 60.611 50.000 10.46 0.00 40.10 2.66
2293 9401 5.411669 TCTCGTTATTTCCTTTTCCTCTTGC 59.588 40.000 0.00 0.00 0.00 4.01
2297 9405 7.119262 TCGTTATTTCCTTTTCCTCTTGCTAAG 59.881 37.037 0.00 0.00 0.00 2.18
2301 9409 3.821033 TCCTTTTCCTCTTGCTAAGTTGC 59.179 43.478 0.00 0.00 0.00 4.17
2343 9660 4.133820 CGAATATGCCATGTCTTTGGGTA 58.866 43.478 0.00 0.00 37.24 3.69
2371 9688 7.648142 CAAAATTCAGTAACTACTTGCCAAGA 58.352 34.615 12.25 0.00 33.46 3.02
2373 9690 8.409358 AAATTCAGTAACTACTTGCCAAGATT 57.591 30.769 12.25 5.16 33.46 2.40
2374 9691 7.617041 ATTCAGTAACTACTTGCCAAGATTC 57.383 36.000 12.25 0.00 33.46 2.52
2375 9692 6.109156 TCAGTAACTACTTGCCAAGATTCA 57.891 37.500 12.25 0.00 33.46 2.57
2376 9693 6.530120 TCAGTAACTACTTGCCAAGATTCAA 58.470 36.000 12.25 0.00 33.46 2.69
2379 9696 7.965107 CAGTAACTACTTGCCAAGATTCAATTC 59.035 37.037 12.25 0.00 33.46 2.17
2381 9698 7.530426 AACTACTTGCCAAGATTCAATTCTT 57.470 32.000 12.25 0.00 36.38 2.52
2393 9710 9.956720 CAAGATTCAATTCTTGTAGACAGTTTT 57.043 29.630 6.12 0.00 44.90 2.43
2394 9711 9.956720 AAGATTCAATTCTTGTAGACAGTTTTG 57.043 29.630 0.00 0.00 34.68 2.44
2395 9712 8.571336 AGATTCAATTCTTGTAGACAGTTTTGG 58.429 33.333 0.00 0.00 0.00 3.28
2396 9713 7.873719 TTCAATTCTTGTAGACAGTTTTGGA 57.126 32.000 0.00 0.00 0.00 3.53
2397 9714 8.463930 TTCAATTCTTGTAGACAGTTTTGGAT 57.536 30.769 0.00 0.00 0.00 3.41
2398 9715 7.874940 TCAATTCTTGTAGACAGTTTTGGATG 58.125 34.615 0.00 0.00 0.00 3.51
2399 9716 6.824305 ATTCTTGTAGACAGTTTTGGATGG 57.176 37.500 0.00 0.00 0.00 3.51
2400 9717 4.651778 TCTTGTAGACAGTTTTGGATGGG 58.348 43.478 0.00 0.00 0.00 4.00
2401 9718 2.790433 TGTAGACAGTTTTGGATGGGC 58.210 47.619 0.00 0.00 0.00 5.36
2402 9719 2.107378 TGTAGACAGTTTTGGATGGGCA 59.893 45.455 0.00 0.00 0.00 5.36
2403 9720 2.380064 AGACAGTTTTGGATGGGCAA 57.620 45.000 0.00 0.00 0.00 4.52
2404 9721 2.676748 AGACAGTTTTGGATGGGCAAA 58.323 42.857 0.00 0.00 0.00 3.68
2405 9722 3.037549 AGACAGTTTTGGATGGGCAAAA 58.962 40.909 0.00 0.00 0.00 2.44
2406 9723 3.647590 AGACAGTTTTGGATGGGCAAAAT 59.352 39.130 0.00 0.00 33.61 1.82
2407 9724 4.102996 AGACAGTTTTGGATGGGCAAAATT 59.897 37.500 0.00 0.00 33.61 1.82
2408 9725 4.388485 ACAGTTTTGGATGGGCAAAATTC 58.612 39.130 0.00 0.00 33.61 2.17
2409 9726 4.141528 ACAGTTTTGGATGGGCAAAATTCA 60.142 37.500 0.00 0.00 33.61 2.57
2410 9727 4.453136 CAGTTTTGGATGGGCAAAATTCAG 59.547 41.667 0.00 0.00 33.61 3.02
2411 9728 4.102996 AGTTTTGGATGGGCAAAATTCAGT 59.897 37.500 0.00 0.00 33.61 3.41
2412 9729 5.306678 AGTTTTGGATGGGCAAAATTCAGTA 59.693 36.000 0.00 0.00 33.61 2.74
2413 9730 5.815233 TTTGGATGGGCAAAATTCAGTAA 57.185 34.783 0.00 0.00 0.00 2.24
2414 9731 4.799564 TGGATGGGCAAAATTCAGTAAC 57.200 40.909 0.00 0.00 0.00 2.50
2415 9732 4.155709 TGGATGGGCAAAATTCAGTAACA 58.844 39.130 0.00 0.00 0.00 2.41
2416 9733 4.776837 TGGATGGGCAAAATTCAGTAACAT 59.223 37.500 0.00 0.00 0.00 2.71
2417 9734 5.105392 TGGATGGGCAAAATTCAGTAACATC 60.105 40.000 0.00 0.00 33.37 3.06
2418 9735 5.127682 GGATGGGCAAAATTCAGTAACATCT 59.872 40.000 0.00 0.00 34.29 2.90
2419 9736 6.351286 GGATGGGCAAAATTCAGTAACATCTT 60.351 38.462 0.00 0.00 34.29 2.40
2420 9737 6.418057 TGGGCAAAATTCAGTAACATCTTT 57.582 33.333 0.00 0.00 0.00 2.52
2421 9738 6.222389 TGGGCAAAATTCAGTAACATCTTTG 58.778 36.000 0.00 0.00 0.00 2.77
2422 9739 5.639082 GGGCAAAATTCAGTAACATCTTTGG 59.361 40.000 0.00 0.00 0.00 3.28
2423 9740 6.454795 GGCAAAATTCAGTAACATCTTTGGA 58.545 36.000 0.00 0.00 0.00 3.53
2424 9741 7.099120 GGCAAAATTCAGTAACATCTTTGGAT 58.901 34.615 0.00 0.00 0.00 3.41
2434 9751 1.672881 CATCTTTGGATGGGCTCGAAC 59.327 52.381 0.00 0.00 43.97 3.95
2497 9815 7.722795 TGTTTCAAATGTAGTTCTTCGATCA 57.277 32.000 0.00 0.00 0.00 2.92
2752 10414 3.928769 CGTGATGTGGCCGATGCG 61.929 66.667 0.00 0.00 38.85 4.73
2761 10423 1.813753 GGCCGATGCGTTGCTTCTA 60.814 57.895 0.00 0.00 38.85 2.10
2955 10639 6.058833 TGTTTACATGGTTTGAACAGCTCTA 58.941 36.000 0.00 0.00 0.00 2.43
2974 10662 5.636543 GCTCTATTTGATTTTTGCAGCAAGT 59.363 36.000 8.12 0.00 0.00 3.16
2993 10681 5.426504 CAAGTCTGAGCTGGATCATAACTT 58.573 41.667 0.00 9.42 36.38 2.66
3200 10888 1.368641 TATGCCATTCTGCGTGTGAC 58.631 50.000 0.00 0.00 0.00 3.67
3211 10899 0.041312 GCGTGTGACGTTGCTGAATT 60.041 50.000 0.00 0.00 44.73 2.17
3215 10903 3.291585 GTGTGACGTTGCTGAATTTCTG 58.708 45.455 0.00 0.00 0.00 3.02
3226 10914 6.110543 TGCTGAATTTCTGATGACGTTATG 57.889 37.500 0.00 0.00 0.00 1.90
3294 10982 1.153549 GTGATGCGAGTGGAGACCC 60.154 63.158 0.00 0.00 0.00 4.46
3304 11008 3.571590 GAGTGGAGACCCATAGATCTGT 58.428 50.000 5.18 0.00 45.68 3.41
3325 11029 1.132624 TGGGTAGGTAGCCTATTCCCC 60.133 57.143 14.62 12.70 40.03 4.81
3326 11030 1.132624 GGGTAGGTAGCCTATTCCCCA 60.133 57.143 12.08 0.00 38.84 4.96
3328 11032 2.572104 GGTAGGTAGCCTATTCCCCATG 59.428 54.545 0.00 0.00 38.48 3.66
3369 11073 0.526310 GCGATGATGCTGTGTCGAGA 60.526 55.000 6.38 0.00 36.25 4.04
3382 11086 4.991472 TGTGTCGAGATCTCTGAATCTTG 58.009 43.478 20.26 2.62 36.13 3.02
3396 11100 2.191128 ATCTTGTCCCTGCAAGTGTC 57.809 50.000 5.84 0.00 44.41 3.67
3411 11115 5.295787 TGCAAGTGTCGAAAACTTCAGTTAT 59.704 36.000 10.91 0.00 35.70 1.89
3493 11197 1.813513 ACACTGCACCATACAGCTTC 58.186 50.000 0.00 0.00 38.79 3.86
3496 11200 0.723414 CTGCACCATACAGCTTCGTG 59.277 55.000 0.00 0.00 0.00 4.35
3497 11201 0.320050 TGCACCATACAGCTTCGTGA 59.680 50.000 0.00 0.00 0.00 4.35
3565 11269 3.269592 TCCTCTCTTGGGTCCTGTTTA 57.730 47.619 0.00 0.00 0.00 2.01
3571 11275 6.200878 TCTCTTGGGTCCTGTTTAAAATCT 57.799 37.500 0.00 0.00 0.00 2.40
3599 11303 3.181510 CGGGCACTGTTTACTTTATGCTC 60.182 47.826 0.00 0.00 33.57 4.26
3659 11363 2.654802 CACCTAGGTGTCGTGTCCT 58.345 57.895 30.57 0.00 40.91 3.85
3660 11364 0.243907 CACCTAGGTGTCGTGTCCTG 59.756 60.000 30.57 4.05 40.91 3.86
3661 11365 0.898789 ACCTAGGTGTCGTGTCCTGG 60.899 60.000 15.42 0.00 35.51 4.45
3662 11366 1.215647 CTAGGTGTCGTGTCCTGGC 59.784 63.158 0.00 0.00 35.51 4.85
3663 11367 1.532078 TAGGTGTCGTGTCCTGGCA 60.532 57.895 0.00 0.00 35.51 4.92
3664 11368 1.532604 TAGGTGTCGTGTCCTGGCAG 61.533 60.000 7.75 7.75 35.51 4.85
3665 11369 2.734591 GTGTCGTGTCCTGGCAGA 59.265 61.111 17.94 0.00 0.00 4.26
3666 11370 1.664965 GTGTCGTGTCCTGGCAGAC 60.665 63.158 17.94 12.66 37.28 3.51
3667 11371 2.048127 GTCGTGTCCTGGCAGACC 60.048 66.667 17.94 6.24 35.83 3.85
3668 11372 2.203640 TCGTGTCCTGGCAGACCT 60.204 61.111 17.94 0.00 35.83 3.85
3669 11373 2.262915 CGTGTCCTGGCAGACCTC 59.737 66.667 17.94 5.78 35.83 3.85
3670 11374 2.279069 CGTGTCCTGGCAGACCTCT 61.279 63.158 17.94 0.00 35.83 3.69
3671 11375 1.821061 CGTGTCCTGGCAGACCTCTT 61.821 60.000 17.94 0.00 35.83 2.85
3672 11376 1.267121 GTGTCCTGGCAGACCTCTTA 58.733 55.000 17.94 0.00 35.83 2.10
3673 11377 1.834263 GTGTCCTGGCAGACCTCTTAT 59.166 52.381 17.94 0.00 35.83 1.73
3674 11378 3.031736 GTGTCCTGGCAGACCTCTTATA 58.968 50.000 17.94 0.00 35.83 0.98
3675 11379 3.643792 GTGTCCTGGCAGACCTCTTATAT 59.356 47.826 17.94 0.00 35.83 0.86
3676 11380 4.101741 GTGTCCTGGCAGACCTCTTATATT 59.898 45.833 17.94 0.00 35.83 1.28
3677 11381 4.345257 TGTCCTGGCAGACCTCTTATATTC 59.655 45.833 17.94 0.00 35.83 1.75
3678 11382 4.345257 GTCCTGGCAGACCTCTTATATTCA 59.655 45.833 17.94 0.00 36.63 2.57
3679 11383 4.968719 TCCTGGCAGACCTCTTATATTCAA 59.031 41.667 17.94 0.00 36.63 2.69
3680 11384 5.059833 CCTGGCAGACCTCTTATATTCAAC 58.940 45.833 17.94 0.00 36.63 3.18
3681 11385 5.163258 CCTGGCAGACCTCTTATATTCAACT 60.163 44.000 17.94 0.00 36.63 3.16
3682 11386 5.918608 TGGCAGACCTCTTATATTCAACTC 58.081 41.667 0.00 0.00 36.63 3.01
3683 11387 5.663106 TGGCAGACCTCTTATATTCAACTCT 59.337 40.000 0.00 0.00 36.63 3.24
3684 11388 5.988561 GGCAGACCTCTTATATTCAACTCTG 59.011 44.000 0.00 0.00 0.00 3.35
3685 11389 6.407525 GGCAGACCTCTTATATTCAACTCTGT 60.408 42.308 0.00 0.00 0.00 3.41
3686 11390 6.478344 GCAGACCTCTTATATTCAACTCTGTG 59.522 42.308 0.00 0.00 0.00 3.66
3687 11391 7.551585 CAGACCTCTTATATTCAACTCTGTGT 58.448 38.462 0.00 0.00 0.00 3.72
3688 11392 7.490725 CAGACCTCTTATATTCAACTCTGTGTG 59.509 40.741 0.00 0.00 0.00 3.82
3689 11393 7.179338 AGACCTCTTATATTCAACTCTGTGTGT 59.821 37.037 0.00 0.00 0.00 3.72
3690 11394 7.099764 ACCTCTTATATTCAACTCTGTGTGTG 58.900 38.462 0.00 0.00 0.00 3.82
3691 11395 6.536582 CCTCTTATATTCAACTCTGTGTGTGG 59.463 42.308 0.00 0.00 0.00 4.17
3692 11396 5.874810 TCTTATATTCAACTCTGTGTGTGGC 59.125 40.000 0.00 0.00 0.00 5.01
3693 11397 2.346766 ATTCAACTCTGTGTGTGGCA 57.653 45.000 0.00 0.00 0.00 4.92
3694 11398 2.121291 TTCAACTCTGTGTGTGGCAA 57.879 45.000 0.00 0.00 0.00 4.52
3695 11399 1.667236 TCAACTCTGTGTGTGGCAAG 58.333 50.000 0.00 0.00 0.00 4.01
3696 11400 1.209261 TCAACTCTGTGTGTGGCAAGA 59.791 47.619 0.00 0.00 0.00 3.02
3697 11401 1.331756 CAACTCTGTGTGTGGCAAGAC 59.668 52.381 0.00 0.00 0.00 3.01
3698 11402 0.179045 ACTCTGTGTGTGGCAAGACC 60.179 55.000 0.00 0.00 39.84 3.85
3699 11403 0.886490 CTCTGTGTGTGGCAAGACCC 60.886 60.000 0.00 0.00 37.83 4.46
3700 11404 1.149174 CTGTGTGTGGCAAGACCCT 59.851 57.895 0.00 0.00 37.83 4.34
3701 11405 0.396435 CTGTGTGTGGCAAGACCCTA 59.604 55.000 0.00 0.00 37.83 3.53
3702 11406 0.396435 TGTGTGTGGCAAGACCCTAG 59.604 55.000 0.00 0.00 37.83 3.02
3703 11407 0.321653 GTGTGTGGCAAGACCCTAGG 60.322 60.000 0.06 0.06 37.83 3.02
3704 11408 0.472925 TGTGTGGCAAGACCCTAGGA 60.473 55.000 11.48 0.00 37.83 2.94
3705 11409 0.690762 GTGTGGCAAGACCCTAGGAA 59.309 55.000 11.48 0.00 37.83 3.36
3706 11410 1.282157 GTGTGGCAAGACCCTAGGAAT 59.718 52.381 11.48 0.00 37.83 3.01
3707 11411 1.559682 TGTGGCAAGACCCTAGGAATC 59.440 52.381 11.48 7.66 37.83 2.52
3708 11412 0.830648 TGGCAAGACCCTAGGAATCG 59.169 55.000 11.48 0.00 37.83 3.34
3709 11413 1.120530 GGCAAGACCCTAGGAATCGA 58.879 55.000 11.48 0.00 0.00 3.59
3710 11414 1.069358 GGCAAGACCCTAGGAATCGAG 59.931 57.143 11.48 6.83 0.00 4.04
3711 11415 1.757699 GCAAGACCCTAGGAATCGAGT 59.242 52.381 11.48 0.00 0.00 4.18
3712 11416 2.482142 GCAAGACCCTAGGAATCGAGTG 60.482 54.545 11.48 9.53 0.00 3.51
3713 11417 1.404843 AGACCCTAGGAATCGAGTGC 58.595 55.000 11.48 0.00 0.00 4.40
3714 11418 1.112113 GACCCTAGGAATCGAGTGCA 58.888 55.000 11.48 0.00 0.00 4.57
3715 11419 1.689273 GACCCTAGGAATCGAGTGCAT 59.311 52.381 11.48 0.00 0.00 3.96
3716 11420 2.891580 GACCCTAGGAATCGAGTGCATA 59.108 50.000 11.48 0.00 0.00 3.14
3717 11421 3.305720 ACCCTAGGAATCGAGTGCATAA 58.694 45.455 11.48 0.00 0.00 1.90
3718 11422 3.709653 ACCCTAGGAATCGAGTGCATAAA 59.290 43.478 11.48 0.00 0.00 1.40
3719 11423 4.348168 ACCCTAGGAATCGAGTGCATAAAT 59.652 41.667 11.48 0.00 0.00 1.40
3720 11424 4.932200 CCCTAGGAATCGAGTGCATAAATC 59.068 45.833 11.48 0.00 0.00 2.17
3721 11425 5.511373 CCCTAGGAATCGAGTGCATAAATCA 60.511 44.000 11.48 0.00 0.00 2.57
3722 11426 5.406780 CCTAGGAATCGAGTGCATAAATCAC 59.593 44.000 1.05 0.00 34.80 3.06
3723 11427 4.130118 AGGAATCGAGTGCATAAATCACC 58.870 43.478 7.23 0.00 35.14 4.02
3724 11428 3.876914 GGAATCGAGTGCATAAATCACCA 59.123 43.478 0.00 0.00 35.14 4.17
3725 11429 4.024556 GGAATCGAGTGCATAAATCACCAG 60.025 45.833 0.00 0.00 35.14 4.00
3726 11430 3.610040 TCGAGTGCATAAATCACCAGT 57.390 42.857 0.00 0.00 35.14 4.00
3727 11431 3.937814 TCGAGTGCATAAATCACCAGTT 58.062 40.909 0.00 0.00 35.14 3.16
3728 11432 4.323417 TCGAGTGCATAAATCACCAGTTT 58.677 39.130 0.00 0.00 35.14 2.66
3729 11433 4.391830 TCGAGTGCATAAATCACCAGTTTC 59.608 41.667 0.00 0.00 35.14 2.78
3730 11434 4.651994 GAGTGCATAAATCACCAGTTTCG 58.348 43.478 0.00 0.00 35.14 3.46
3731 11435 4.072131 AGTGCATAAATCACCAGTTTCGT 58.928 39.130 0.00 0.00 35.14 3.85
3732 11436 4.518970 AGTGCATAAATCACCAGTTTCGTT 59.481 37.500 0.00 0.00 35.14 3.85
3733 11437 4.616802 GTGCATAAATCACCAGTTTCGTTG 59.383 41.667 0.00 0.00 0.00 4.10
3734 11438 4.277174 TGCATAAATCACCAGTTTCGTTGT 59.723 37.500 0.00 0.00 0.00 3.32
3735 11439 4.851558 GCATAAATCACCAGTTTCGTTGTC 59.148 41.667 0.00 0.00 0.00 3.18
3736 11440 5.334879 GCATAAATCACCAGTTTCGTTGTCT 60.335 40.000 0.00 0.00 0.00 3.41
3737 11441 4.552166 AAATCACCAGTTTCGTTGTCTG 57.448 40.909 0.00 0.00 0.00 3.51
3745 11449 5.168526 CAGTTTCGTTGTCTGGAATTTCA 57.831 39.130 0.00 0.00 0.00 2.69
3746 11450 5.762045 CAGTTTCGTTGTCTGGAATTTCAT 58.238 37.500 0.00 0.00 0.00 2.57
3747 11451 6.208644 CAGTTTCGTTGTCTGGAATTTCATT 58.791 36.000 0.00 0.00 0.00 2.57
3748 11452 6.697019 CAGTTTCGTTGTCTGGAATTTCATTT 59.303 34.615 0.00 0.00 0.00 2.32
3749 11453 6.697019 AGTTTCGTTGTCTGGAATTTCATTTG 59.303 34.615 0.00 0.00 0.00 2.32
3750 11454 5.766150 TCGTTGTCTGGAATTTCATTTGT 57.234 34.783 0.00 0.00 0.00 2.83
3751 11455 5.518812 TCGTTGTCTGGAATTTCATTTGTG 58.481 37.500 0.00 0.00 0.00 3.33
3752 11456 5.067153 TCGTTGTCTGGAATTTCATTTGTGT 59.933 36.000 0.00 0.00 0.00 3.72
3753 11457 5.748152 CGTTGTCTGGAATTTCATTTGTGTT 59.252 36.000 0.00 0.00 0.00 3.32
3754 11458 6.255453 CGTTGTCTGGAATTTCATTTGTGTTT 59.745 34.615 0.00 0.00 0.00 2.83
3755 11459 7.401080 GTTGTCTGGAATTTCATTTGTGTTTG 58.599 34.615 0.00 0.00 0.00 2.93
3756 11460 6.871844 TGTCTGGAATTTCATTTGTGTTTGA 58.128 32.000 0.00 0.00 0.00 2.69
3757 11461 7.499292 TGTCTGGAATTTCATTTGTGTTTGAT 58.501 30.769 0.00 0.00 0.00 2.57
3758 11462 8.637099 TGTCTGGAATTTCATTTGTGTTTGATA 58.363 29.630 0.00 0.00 0.00 2.15
3759 11463 8.915654 GTCTGGAATTTCATTTGTGTTTGATAC 58.084 33.333 0.00 0.00 0.00 2.24
3760 11464 8.859090 TCTGGAATTTCATTTGTGTTTGATACT 58.141 29.630 0.00 0.00 0.00 2.12
3761 11465 8.815141 TGGAATTTCATTTGTGTTTGATACTG 57.185 30.769 0.00 0.00 0.00 2.74
3762 11466 8.637099 TGGAATTTCATTTGTGTTTGATACTGA 58.363 29.630 0.00 0.00 0.00 3.41
3763 11467 9.132521 GGAATTTCATTTGTGTTTGATACTGAG 57.867 33.333 0.00 0.00 0.00 3.35
3764 11468 9.683069 GAATTTCATTTGTGTTTGATACTGAGT 57.317 29.630 0.00 0.00 0.00 3.41
3766 11470 9.683069 ATTTCATTTGTGTTTGATACTGAGTTC 57.317 29.630 0.00 0.00 0.00 3.01
3767 11471 7.800155 TCATTTGTGTTTGATACTGAGTTCA 57.200 32.000 0.00 0.00 0.00 3.18
3769 11473 7.714813 TCATTTGTGTTTGATACTGAGTTCAGA 59.285 33.333 15.63 0.66 46.59 3.27
3770 11474 8.509690 CATTTGTGTTTGATACTGAGTTCAGAT 58.490 33.333 15.63 5.22 46.59 2.90
3771 11475 9.725019 ATTTGTGTTTGATACTGAGTTCAGATA 57.275 29.630 15.63 5.30 46.59 1.98
3772 11476 9.554395 TTTGTGTTTGATACTGAGTTCAGATAA 57.446 29.630 15.63 1.83 46.59 1.75
3773 11477 8.763049 TGTGTTTGATACTGAGTTCAGATAAG 57.237 34.615 15.63 0.00 46.59 1.73
3774 11478 8.367911 TGTGTTTGATACTGAGTTCAGATAAGT 58.632 33.333 15.63 0.00 46.59 2.24
3775 11479 8.865001 GTGTTTGATACTGAGTTCAGATAAGTC 58.135 37.037 15.63 6.60 46.59 3.01
3776 11480 8.807118 TGTTTGATACTGAGTTCAGATAAGTCT 58.193 33.333 15.63 0.00 46.59 3.24
3777 11481 9.646427 GTTTGATACTGAGTTCAGATAAGTCTT 57.354 33.333 15.63 0.00 46.59 3.01
3780 11484 9.462606 TGATACTGAGTTCAGATAAGTCTTACA 57.537 33.333 15.63 0.09 46.59 2.41
3786 11490 9.996554 TGAGTTCAGATAAGTCTTACATTTTGA 57.003 29.630 0.00 0.00 30.42 2.69
3808 11512 8.681486 TTGATATCAAAACAGGAGACATATGG 57.319 34.615 15.82 0.00 32.11 2.74
3809 11513 7.805163 TGATATCAAAACAGGAGACATATGGT 58.195 34.615 7.80 0.00 0.00 3.55
3818 11522 2.442056 GACATATGGTCGCCCTCCT 58.558 57.895 7.80 0.00 36.65 3.69
3819 11523 0.318762 GACATATGGTCGCCCTCCTC 59.681 60.000 7.80 0.00 36.65 3.71
3820 11524 0.105453 ACATATGGTCGCCCTCCTCT 60.105 55.000 7.80 0.00 0.00 3.69
3821 11525 0.319728 CATATGGTCGCCCTCCTCTG 59.680 60.000 0.00 0.00 0.00 3.35
3822 11526 0.833834 ATATGGTCGCCCTCCTCTGG 60.834 60.000 0.00 0.00 0.00 3.86
3828 11532 4.459089 GCCCTCCTCTGGCGACAC 62.459 72.222 0.00 0.00 39.48 3.67
3829 11533 4.135153 CCCTCCTCTGGCGACACG 62.135 72.222 0.00 0.00 35.60 4.49
3830 11534 4.135153 CCTCCTCTGGCGACACGG 62.135 72.222 0.00 0.00 35.60 4.94
3831 11535 4.135153 CTCCTCTGGCGACACGGG 62.135 72.222 0.00 0.00 35.60 5.28
3854 11558 4.514577 CCTCGCCGCCACCACTAG 62.515 72.222 0.00 0.00 0.00 2.57
3861 11565 3.721706 GCCACCACTAGCAGGCCT 61.722 66.667 0.00 0.00 41.25 5.19
3862 11566 2.586792 CCACCACTAGCAGGCCTC 59.413 66.667 0.00 0.00 0.00 4.70
3863 11567 1.992277 CCACCACTAGCAGGCCTCT 60.992 63.158 0.00 6.08 0.00 3.69
3864 11568 1.519719 CACCACTAGCAGGCCTCTC 59.480 63.158 0.00 0.00 0.00 3.20
3865 11569 1.687493 ACCACTAGCAGGCCTCTCC 60.687 63.158 0.00 0.00 0.00 3.71
3866 11570 2.790791 CCACTAGCAGGCCTCTCCG 61.791 68.421 0.00 0.00 40.77 4.63
3867 11571 3.151022 ACTAGCAGGCCTCTCCGC 61.151 66.667 0.00 2.63 40.77 5.54
3963 11667 1.227205 CAGATCTGCCTCCTCACGC 60.227 63.158 10.38 0.00 0.00 5.34
3964 11668 2.107953 GATCTGCCTCCTCACGCC 59.892 66.667 0.00 0.00 0.00 5.68
3965 11669 3.453070 GATCTGCCTCCTCACGCCC 62.453 68.421 0.00 0.00 0.00 6.13
4036 11740 4.421515 CTGCCCCTGCTGGTCCAG 62.422 72.222 15.15 15.15 38.71 3.86
4045 11749 4.880537 CTGGTCCAGCGGCGCTAG 62.881 72.222 35.90 28.41 36.40 3.42
4047 11751 3.917760 GGTCCAGCGGCGCTAGAT 61.918 66.667 35.90 10.42 36.40 1.98
4048 11752 2.355244 GTCCAGCGGCGCTAGATC 60.355 66.667 35.90 21.67 36.40 2.75
4049 11753 3.606662 TCCAGCGGCGCTAGATCC 61.607 66.667 35.90 1.35 36.40 3.36
4054 11758 4.344474 CGGCGCTAGATCCGGTCC 62.344 72.222 7.64 0.00 41.82 4.46
4055 11759 2.913060 GGCGCTAGATCCGGTCCT 60.913 66.667 7.64 2.10 0.00 3.85
4056 11760 2.646143 GCGCTAGATCCGGTCCTC 59.354 66.667 0.00 0.00 0.00 3.71
4057 11761 2.921797 GCGCTAGATCCGGTCCTCC 61.922 68.421 0.00 0.00 0.00 4.30
4058 11762 1.528542 CGCTAGATCCGGTCCTCCA 60.529 63.158 0.00 0.00 0.00 3.86
4059 11763 1.797211 CGCTAGATCCGGTCCTCCAC 61.797 65.000 0.00 0.00 0.00 4.02
4060 11764 1.797211 GCTAGATCCGGTCCTCCACG 61.797 65.000 0.00 0.00 0.00 4.94
4061 11765 0.179026 CTAGATCCGGTCCTCCACGA 60.179 60.000 0.00 0.00 0.00 4.35
4062 11766 0.465097 TAGATCCGGTCCTCCACGAC 60.465 60.000 0.00 0.00 0.00 4.34
4063 11767 2.036731 ATCCGGTCCTCCACGACA 59.963 61.111 0.00 0.00 34.24 4.35
4064 11768 1.601419 GATCCGGTCCTCCACGACAA 61.601 60.000 0.00 0.00 34.24 3.18
4065 11769 1.885163 ATCCGGTCCTCCACGACAAC 61.885 60.000 0.00 0.00 34.24 3.32
4066 11770 2.048503 CGGTCCTCCACGACAACC 60.049 66.667 0.00 0.00 34.24 3.77
4067 11771 2.571216 CGGTCCTCCACGACAACCT 61.571 63.158 0.00 0.00 34.24 3.50
4068 11772 1.752833 GGTCCTCCACGACAACCTT 59.247 57.895 0.00 0.00 34.24 3.50
4069 11773 0.320508 GGTCCTCCACGACAACCTTC 60.321 60.000 0.00 0.00 34.24 3.46
4070 11774 0.680061 GTCCTCCACGACAACCTTCT 59.320 55.000 0.00 0.00 32.74 2.85
4071 11775 0.679505 TCCTCCACGACAACCTTCTG 59.320 55.000 0.00 0.00 0.00 3.02
4072 11776 0.951040 CCTCCACGACAACCTTCTGC 60.951 60.000 0.00 0.00 0.00 4.26
4073 11777 1.284982 CTCCACGACAACCTTCTGCG 61.285 60.000 0.00 0.00 0.00 5.18
4074 11778 2.551270 CACGACAACCTTCTGCGC 59.449 61.111 0.00 0.00 0.00 6.09
4075 11779 3.036084 ACGACAACCTTCTGCGCG 61.036 61.111 0.00 0.00 0.00 6.86
4076 11780 3.777925 CGACAACCTTCTGCGCGG 61.778 66.667 10.86 10.86 0.00 6.46
4077 11781 2.357034 GACAACCTTCTGCGCGGA 60.357 61.111 16.69 16.69 0.00 5.54
4078 11782 1.741770 GACAACCTTCTGCGCGGAT 60.742 57.895 21.71 3.05 0.00 4.18
4079 11783 1.696832 GACAACCTTCTGCGCGGATC 61.697 60.000 21.71 9.75 0.00 3.36
4080 11784 2.125106 AACCTTCTGCGCGGATCC 60.125 61.111 21.71 0.00 0.00 3.36
4081 11785 4.514577 ACCTTCTGCGCGGATCCG 62.515 66.667 30.03 30.03 43.09 4.18
4108 11812 3.866582 CCCCCGACCATCCTCAGC 61.867 72.222 0.00 0.00 0.00 4.26
4109 11813 3.866582 CCCCGACCATCCTCAGCC 61.867 72.222 0.00 0.00 0.00 4.85
4110 11814 4.227134 CCCGACCATCCTCAGCCG 62.227 72.222 0.00 0.00 0.00 5.52
4111 11815 4.899239 CCGACCATCCTCAGCCGC 62.899 72.222 0.00 0.00 0.00 6.53
4112 11816 4.899239 CGACCATCCTCAGCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
4113 11817 3.785859 GACCATCCTCAGCCGCCA 61.786 66.667 0.00 0.00 0.00 5.69
4114 11818 4.101448 ACCATCCTCAGCCGCCAC 62.101 66.667 0.00 0.00 0.00 5.01
4134 11838 3.844090 GCGCCACCTCTCTCCCTC 61.844 72.222 0.00 0.00 0.00 4.30
4135 11839 3.522731 CGCCACCTCTCTCCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
4136 11840 3.844090 GCCACCTCTCTCCCTCGC 61.844 72.222 0.00 0.00 0.00 5.03
4137 11841 3.522731 CCACCTCTCTCCCTCGCG 61.523 72.222 0.00 0.00 0.00 5.87
4138 11842 4.200283 CACCTCTCTCCCTCGCGC 62.200 72.222 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 232 0.754957 AGTCTGAGAGCCCGATCCAG 60.755 60.000 0.00 0.00 0.00 3.86
238 248 6.887545 CCTTCCTATTCGGTATGATAGAGTCT 59.112 42.308 0.00 0.00 0.00 3.24
246 256 2.684943 TGGCCTTCCTATTCGGTATGA 58.315 47.619 3.32 0.00 0.00 2.15
291 301 4.766891 TCCTTTCATTCCAGATTGTCCAAC 59.233 41.667 0.00 0.00 0.00 3.77
329 339 0.690762 GGTGGGGCACTCTTGAGTTA 59.309 55.000 0.00 0.00 34.40 2.24
392 402 3.055719 CTTTGCACCCGCCGTGAT 61.056 61.111 5.16 0.00 46.20 3.06
486 498 4.659529 AGAGGGGGAAAAGGAGTTTAAG 57.340 45.455 0.00 0.00 0.00 1.85
553 565 7.868415 ACGGCAGATGAAGAGAGTATTTTATAC 59.132 37.037 0.00 0.00 0.00 1.47
556 568 6.042777 CACGGCAGATGAAGAGAGTATTTTA 58.957 40.000 0.00 0.00 0.00 1.52
557 569 4.872691 CACGGCAGATGAAGAGAGTATTTT 59.127 41.667 0.00 0.00 0.00 1.82
558 570 4.081420 ACACGGCAGATGAAGAGAGTATTT 60.081 41.667 0.00 0.00 0.00 1.40
560 572 3.027412 ACACGGCAGATGAAGAGAGTAT 58.973 45.455 0.00 0.00 0.00 2.12
562 574 1.203523 GACACGGCAGATGAAGAGAGT 59.796 52.381 0.00 0.00 0.00 3.24
563 575 1.203287 TGACACGGCAGATGAAGAGAG 59.797 52.381 0.00 0.00 0.00 3.20
564 576 1.256812 TGACACGGCAGATGAAGAGA 58.743 50.000 0.00 0.00 0.00 3.10
568 580 2.286713 CGTTTTTGACACGGCAGATGAA 60.287 45.455 0.00 0.00 33.86 2.57
569 581 1.262950 CGTTTTTGACACGGCAGATGA 59.737 47.619 0.00 0.00 33.86 2.92
570 582 1.673760 CGTTTTTGACACGGCAGATG 58.326 50.000 0.00 0.00 33.86 2.90
571 583 0.040425 GCGTTTTTGACACGGCAGAT 60.040 50.000 0.00 0.00 38.13 2.90
572 584 1.353804 GCGTTTTTGACACGGCAGA 59.646 52.632 0.00 0.00 38.13 4.26
573 585 2.003443 CGCGTTTTTGACACGGCAG 61.003 57.895 0.00 0.00 38.13 4.85
575 587 3.383601 GCGCGTTTTTGACACGGC 61.384 61.111 8.43 0.00 38.13 5.68
576 588 0.042013 TAAGCGCGTTTTTGACACGG 60.042 50.000 14.84 0.00 38.13 4.94
577 589 1.945207 ATAAGCGCGTTTTTGACACG 58.055 45.000 14.84 0.00 40.75 4.49
580 592 5.556470 TCTCAATATAAGCGCGTTTTTGAC 58.444 37.500 14.84 0.00 0.00 3.18
581 593 5.788055 TCTCAATATAAGCGCGTTTTTGA 57.212 34.783 14.84 16.07 0.00 2.69
582 594 5.396362 CCATCTCAATATAAGCGCGTTTTTG 59.604 40.000 14.84 12.55 0.00 2.44
584 596 4.814234 TCCATCTCAATATAAGCGCGTTTT 59.186 37.500 14.84 8.40 0.00 2.43
586 598 3.990092 TCCATCTCAATATAAGCGCGTT 58.010 40.909 8.43 0.00 0.00 4.84
587 599 3.579709 CTCCATCTCAATATAAGCGCGT 58.420 45.455 8.43 0.00 0.00 6.01
588 600 2.926200 CCTCCATCTCAATATAAGCGCG 59.074 50.000 0.00 0.00 0.00 6.86
589 601 3.055819 TCCCTCCATCTCAATATAAGCGC 60.056 47.826 0.00 0.00 0.00 5.92
590 602 4.221703 ACTCCCTCCATCTCAATATAAGCG 59.778 45.833 0.00 0.00 0.00 4.68
591 603 5.753721 ACTCCCTCCATCTCAATATAAGC 57.246 43.478 0.00 0.00 0.00 3.09
592 604 8.657387 TTCTACTCCCTCCATCTCAATATAAG 57.343 38.462 0.00 0.00 0.00 1.73
593 605 8.456940 TCTTCTACTCCCTCCATCTCAATATAA 58.543 37.037 0.00 0.00 0.00 0.98
596 608 6.281190 TCTTCTACTCCCTCCATCTCAATA 57.719 41.667 0.00 0.00 0.00 1.90
597 609 5.149584 TCTTCTACTCCCTCCATCTCAAT 57.850 43.478 0.00 0.00 0.00 2.57
599 611 4.078922 ACATCTTCTACTCCCTCCATCTCA 60.079 45.833 0.00 0.00 0.00 3.27
600 612 4.479158 ACATCTTCTACTCCCTCCATCTC 58.521 47.826 0.00 0.00 0.00 2.75
601 613 4.551215 ACATCTTCTACTCCCTCCATCT 57.449 45.455 0.00 0.00 0.00 2.90
602 614 4.898861 AGAACATCTTCTACTCCCTCCATC 59.101 45.833 0.00 0.00 34.74 3.51
603 615 4.889780 AGAACATCTTCTACTCCCTCCAT 58.110 43.478 0.00 0.00 34.74 3.41
604 616 4.338795 AGAACATCTTCTACTCCCTCCA 57.661 45.455 0.00 0.00 34.74 3.86
605 617 5.685520 AAAGAACATCTTCTACTCCCTCC 57.314 43.478 0.00 0.00 35.27 4.30
606 618 6.702329 TGAAAAGAACATCTTCTACTCCCTC 58.298 40.000 0.00 0.00 35.27 4.30
607 619 6.688073 TGAAAAGAACATCTTCTACTCCCT 57.312 37.500 0.00 0.00 35.27 4.20
608 620 7.066404 GGATTGAAAAGAACATCTTCTACTCCC 59.934 40.741 0.00 0.00 35.27 4.30
609 621 7.607991 TGGATTGAAAAGAACATCTTCTACTCC 59.392 37.037 0.00 0.00 35.27 3.85
616 628 9.965902 ACTAGTATGGATTGAAAAGAACATCTT 57.034 29.630 0.00 0.00 38.59 2.40
645 5501 7.487829 GTGTTGACATGTTGTTCTATTGTTGTT 59.512 33.333 0.00 0.00 0.00 2.83
647 5503 6.971756 TGTGTTGACATGTTGTTCTATTGTTG 59.028 34.615 0.00 0.00 0.00 3.33
656 5512 4.032672 CGCAAATTGTGTTGACATGTTGTT 59.967 37.500 0.00 0.00 32.52 2.83
716 5580 2.747855 GCCTCGGGTGCTTTCTGG 60.748 66.667 0.00 0.00 0.00 3.86
799 5663 1.914700 GAGACGAACAACGAGCAGATC 59.085 52.381 0.00 0.00 45.77 2.75
861 5725 1.390820 GCGCAAATCGACGTCAAAAA 58.609 45.000 17.16 0.00 41.67 1.94
901 5765 2.433868 GACACTTTGTCGAGCCACTA 57.566 50.000 0.00 0.00 37.67 2.74
919 5783 2.606961 CGCAGCTTTGCCGACTTGA 61.607 57.895 0.00 0.00 0.00 3.02
940 5804 0.529992 CGTCGGCTCTTTATGTCCCC 60.530 60.000 0.00 0.00 0.00 4.81
942 5806 1.557651 GTCGTCGGCTCTTTATGTCC 58.442 55.000 0.00 0.00 0.00 4.02
1160 6041 0.247736 GTGTGAGCAGGACGGAGAAT 59.752 55.000 0.00 0.00 0.00 2.40
1161 6042 0.827925 AGTGTGAGCAGGACGGAGAA 60.828 55.000 0.00 0.00 0.00 2.87
1176 6063 2.660552 CGTCAACCGGCGAAGTGT 60.661 61.111 9.30 0.00 0.00 3.55
1370 6264 1.310904 GTACTAGCCTCAGGGTCGAG 58.689 60.000 0.00 0.00 34.28 4.04
1394 6293 9.771534 TTGGTAATGATAATATGATGTCGACAA 57.228 29.630 24.13 7.48 0.00 3.18
1401 6300 9.992910 CCGTGAATTGGTAATGATAATATGATG 57.007 33.333 0.00 0.00 0.00 3.07
1459 6461 6.581166 CAGTTAAAAAGACGAATACAAAGCCC 59.419 38.462 0.00 0.00 0.00 5.19
1466 6469 6.677411 GCATCGACAGTTAAAAAGACGAATAC 59.323 38.462 0.00 0.00 33.76 1.89
1531 6878 6.531948 GCACACTTCTTAGAAGAATCACGTAT 59.468 38.462 26.49 0.00 43.52 3.06
1534 6881 4.926238 AGCACACTTCTTAGAAGAATCACG 59.074 41.667 26.49 10.46 43.52 4.35
1615 7911 7.448748 AAGGATTGTACAGTTCCAATAACAC 57.551 36.000 22.14 1.15 31.67 3.32
1627 7923 9.653287 TTAGAAACAGTCATAAGGATTGTACAG 57.347 33.333 0.00 0.00 44.71 2.74
1729 8028 7.389053 ACTTTCTGAACCTTCATAGATGAACAC 59.611 37.037 0.70 0.00 41.51 3.32
1966 8487 9.482627 AGCAACGAAAATTGAAATACCAAAATA 57.517 25.926 0.00 0.00 0.00 1.40
2076 9176 5.127845 TGCAAACAGAAATTGTAAAGGGTCA 59.872 36.000 0.00 0.00 39.73 4.02
2301 9409 4.191544 TCGACCAATAAAAGATGCTCCTG 58.808 43.478 0.00 0.00 0.00 3.86
2311 9419 6.545666 AGACATGGCATATTCGACCAATAAAA 59.454 34.615 0.00 0.00 36.94 1.52
2320 9428 3.213506 CCCAAAGACATGGCATATTCGA 58.786 45.455 0.00 0.00 39.26 3.71
2343 9660 5.048013 GGCAAGTAGTTACTGAATTTTGCCT 60.048 40.000 21.25 0.00 43.87 4.75
2375 9692 6.209391 CCCATCCAAAACTGTCTACAAGAATT 59.791 38.462 0.00 0.00 0.00 2.17
2376 9693 5.711976 CCCATCCAAAACTGTCTACAAGAAT 59.288 40.000 0.00 0.00 0.00 2.40
2379 9696 3.191371 GCCCATCCAAAACTGTCTACAAG 59.809 47.826 0.00 0.00 0.00 3.16
2381 9698 2.107378 TGCCCATCCAAAACTGTCTACA 59.893 45.455 0.00 0.00 0.00 2.74
2387 9704 4.387598 TGAATTTTGCCCATCCAAAACTG 58.612 39.130 2.59 0.00 44.60 3.16
2388 9705 4.102996 ACTGAATTTTGCCCATCCAAAACT 59.897 37.500 2.59 0.00 44.60 2.66
2392 9709 4.590647 TGTTACTGAATTTTGCCCATCCAA 59.409 37.500 0.00 0.00 0.00 3.53
2393 9710 4.155709 TGTTACTGAATTTTGCCCATCCA 58.844 39.130 0.00 0.00 0.00 3.41
2394 9711 4.799564 TGTTACTGAATTTTGCCCATCC 57.200 40.909 0.00 0.00 0.00 3.51
2395 9712 6.212888 AGATGTTACTGAATTTTGCCCATC 57.787 37.500 0.00 0.00 0.00 3.51
2396 9713 6.610075 AAGATGTTACTGAATTTTGCCCAT 57.390 33.333 0.00 0.00 0.00 4.00
2397 9714 6.222389 CAAAGATGTTACTGAATTTTGCCCA 58.778 36.000 0.00 0.00 0.00 5.36
2398 9715 5.639082 CCAAAGATGTTACTGAATTTTGCCC 59.361 40.000 0.00 0.00 0.00 5.36
2399 9716 6.454795 TCCAAAGATGTTACTGAATTTTGCC 58.545 36.000 0.00 0.00 0.00 4.52
2400 9717 7.956558 CATCCAAAGATGTTACTGAATTTTGC 58.043 34.615 0.00 0.00 44.22 3.68
2415 9732 1.281867 TGTTCGAGCCCATCCAAAGAT 59.718 47.619 0.00 0.00 0.00 2.40
2416 9733 0.690192 TGTTCGAGCCCATCCAAAGA 59.310 50.000 0.00 0.00 0.00 2.52
2417 9734 1.533625 TTGTTCGAGCCCATCCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
2418 9735 2.214376 ATTGTTCGAGCCCATCCAAA 57.786 45.000 0.00 0.00 0.00 3.28
2419 9736 2.214376 AATTGTTCGAGCCCATCCAA 57.786 45.000 0.00 0.00 0.00 3.53
2420 9737 2.214376 AAATTGTTCGAGCCCATCCA 57.786 45.000 0.00 0.00 0.00 3.41
2421 9738 2.491693 TCAAAATTGTTCGAGCCCATCC 59.508 45.455 0.00 0.00 0.00 3.51
2422 9739 3.848272 TCAAAATTGTTCGAGCCCATC 57.152 42.857 0.00 0.00 0.00 3.51
2423 9740 3.056607 CCTTCAAAATTGTTCGAGCCCAT 60.057 43.478 0.00 0.00 0.00 4.00
2424 9741 2.295909 CCTTCAAAATTGTTCGAGCCCA 59.704 45.455 0.00 0.00 0.00 5.36
2425 9742 2.556622 TCCTTCAAAATTGTTCGAGCCC 59.443 45.455 0.00 0.00 0.00 5.19
2426 9743 3.915437 TCCTTCAAAATTGTTCGAGCC 57.085 42.857 0.00 0.00 0.00 4.70
2551 9871 6.789268 TCAAAGGGAATTTTCATAGGAGTGA 58.211 36.000 0.00 0.00 0.00 3.41
2655 10305 3.375782 AACAGAATTTCAGCAGCCAAC 57.624 42.857 0.00 0.00 0.00 3.77
2752 10414 8.198109 TCTGGTTTCTCATATACTAGAAGCAAC 58.802 37.037 0.00 4.14 35.39 4.17
2761 10423 7.382110 CGGATGATTCTGGTTTCTCATATACT 58.618 38.462 0.00 0.00 0.00 2.12
2955 10639 5.603596 TCAGACTTGCTGCAAAAATCAAAT 58.396 33.333 16.74 0.00 44.52 2.32
2974 10662 4.718774 AGGAAAGTTATGATCCAGCTCAGA 59.281 41.667 0.00 0.00 35.62 3.27
2993 10681 2.698797 GACGAGATTGGGGTGATAGGAA 59.301 50.000 0.00 0.00 0.00 3.36
3194 10882 3.002246 TCAGAAATTCAGCAACGTCACAC 59.998 43.478 0.00 0.00 0.00 3.82
3200 10888 3.120546 ACGTCATCAGAAATTCAGCAACG 60.121 43.478 0.00 1.59 0.00 4.10
3211 10899 7.600752 TGTCATTACAACATAACGTCATCAGAA 59.399 33.333 0.00 0.00 30.91 3.02
3215 10903 7.216317 GCTTTGTCATTACAACATAACGTCATC 59.784 37.037 0.00 0.00 45.18 2.92
3226 10914 9.495754 GAAGATTGATAGCTTTGTCATTACAAC 57.504 33.333 0.00 0.00 45.18 3.32
3273 10961 1.066303 GGTCTCCACTCGCATCACTAG 59.934 57.143 0.00 0.00 0.00 2.57
3276 10964 1.153549 GGGTCTCCACTCGCATCAC 60.154 63.158 0.00 0.00 0.00 3.06
3294 10982 4.021016 GGCTACCTACCCAACAGATCTATG 60.021 50.000 0.00 0.00 0.00 2.23
3304 11008 2.697967 GGGAATAGGCTACCTACCCAA 58.302 52.381 16.81 0.00 40.30 4.12
3325 11029 2.323939 TTCGTTTACAAAGGCGCATG 57.676 45.000 10.83 7.71 0.00 4.06
3326 11030 4.155280 AGTTATTCGTTTACAAAGGCGCAT 59.845 37.500 10.83 0.00 0.00 4.73
3328 11032 3.844099 CAGTTATTCGTTTACAAAGGCGC 59.156 43.478 0.00 0.00 0.00 6.53
3369 11073 2.842496 TGCAGGGACAAGATTCAGAGAT 59.158 45.455 0.00 0.00 0.00 2.75
3382 11086 1.002792 GTTTTCGACACTTGCAGGGAC 60.003 52.381 0.00 0.00 0.00 4.46
3396 11100 3.121126 ACGCGACATAACTGAAGTTTTCG 60.121 43.478 15.93 8.61 39.31 3.46
3496 11200 4.271049 CGTTGAATATGACATCACCCTGTC 59.729 45.833 0.00 0.00 44.70 3.51
3497 11201 4.191544 CGTTGAATATGACATCACCCTGT 58.808 43.478 0.00 0.00 0.00 4.00
3510 11214 5.842907 TGATCGGAGATCAACGTTGAATAT 58.157 37.500 32.69 21.35 45.12 1.28
3512 11216 4.115516 CTGATCGGAGATCAACGTTGAAT 58.884 43.478 32.69 24.10 45.12 2.57
3542 11246 3.715648 ACAGGACCCAAGAGAGGATAT 57.284 47.619 0.00 0.00 0.00 1.63
3565 11269 0.827507 AGTGCCCGTTGCCAGATTTT 60.828 50.000 0.00 0.00 40.16 1.82
3571 11275 1.152943 TAAACAGTGCCCGTTGCCA 60.153 52.632 0.00 0.00 40.16 4.92
3656 11360 4.556697 TGAATATAAGAGGTCTGCCAGGA 58.443 43.478 0.00 0.00 37.19 3.86
3657 11361 4.963318 TGAATATAAGAGGTCTGCCAGG 57.037 45.455 0.00 0.00 37.19 4.45
3658 11362 5.923204 AGTTGAATATAAGAGGTCTGCCAG 58.077 41.667 0.00 0.00 37.19 4.85
3659 11363 5.663106 AGAGTTGAATATAAGAGGTCTGCCA 59.337 40.000 0.00 0.00 37.19 4.92
3660 11364 5.988561 CAGAGTTGAATATAAGAGGTCTGCC 59.011 44.000 0.00 0.00 0.00 4.85
3661 11365 6.478344 CACAGAGTTGAATATAAGAGGTCTGC 59.522 42.308 0.00 0.00 33.67 4.26
3662 11366 7.490725 CACACAGAGTTGAATATAAGAGGTCTG 59.509 40.741 0.00 0.00 35.95 3.51
3663 11367 7.179338 ACACACAGAGTTGAATATAAGAGGTCT 59.821 37.037 0.00 0.00 0.00 3.85
3664 11368 7.276658 CACACACAGAGTTGAATATAAGAGGTC 59.723 40.741 0.00 0.00 0.00 3.85
3665 11369 7.099764 CACACACAGAGTTGAATATAAGAGGT 58.900 38.462 0.00 0.00 0.00 3.85
3666 11370 6.536582 CCACACACAGAGTTGAATATAAGAGG 59.463 42.308 0.00 0.00 0.00 3.69
3667 11371 6.036517 GCCACACACAGAGTTGAATATAAGAG 59.963 42.308 0.00 0.00 0.00 2.85
3668 11372 5.874810 GCCACACACAGAGTTGAATATAAGA 59.125 40.000 0.00 0.00 0.00 2.10
3669 11373 5.643348 TGCCACACACAGAGTTGAATATAAG 59.357 40.000 0.00 0.00 0.00 1.73
3670 11374 5.555966 TGCCACACACAGAGTTGAATATAA 58.444 37.500 0.00 0.00 0.00 0.98
3671 11375 5.159273 TGCCACACACAGAGTTGAATATA 57.841 39.130 0.00 0.00 0.00 0.86
3672 11376 4.019792 TGCCACACACAGAGTTGAATAT 57.980 40.909 0.00 0.00 0.00 1.28
3673 11377 3.483808 TGCCACACACAGAGTTGAATA 57.516 42.857 0.00 0.00 0.00 1.75
3674 11378 2.346766 TGCCACACACAGAGTTGAAT 57.653 45.000 0.00 0.00 0.00 2.57
3675 11379 2.016318 CTTGCCACACACAGAGTTGAA 58.984 47.619 0.00 0.00 0.00 2.69
3676 11380 1.209261 TCTTGCCACACACAGAGTTGA 59.791 47.619 0.00 0.00 0.00 3.18
3677 11381 1.331756 GTCTTGCCACACACAGAGTTG 59.668 52.381 0.00 0.00 0.00 3.16
3678 11382 1.668419 GTCTTGCCACACACAGAGTT 58.332 50.000 0.00 0.00 0.00 3.01
3679 11383 0.179045 GGTCTTGCCACACACAGAGT 60.179 55.000 0.00 0.00 37.17 3.24
3680 11384 0.886490 GGGTCTTGCCACACACAGAG 60.886 60.000 0.00 0.00 39.65 3.35
3681 11385 1.148273 GGGTCTTGCCACACACAGA 59.852 57.895 0.00 0.00 39.65 3.41
3682 11386 0.396435 TAGGGTCTTGCCACACACAG 59.604 55.000 0.00 0.00 39.65 3.66
3683 11387 0.396435 CTAGGGTCTTGCCACACACA 59.604 55.000 0.00 0.00 39.65 3.72
3684 11388 0.321653 CCTAGGGTCTTGCCACACAC 60.322 60.000 0.00 0.00 39.65 3.82
3685 11389 0.472925 TCCTAGGGTCTTGCCACACA 60.473 55.000 9.46 0.00 39.65 3.72
3686 11390 0.690762 TTCCTAGGGTCTTGCCACAC 59.309 55.000 9.46 0.00 39.65 3.82
3687 11391 1.559682 GATTCCTAGGGTCTTGCCACA 59.440 52.381 9.46 0.00 39.65 4.17
3688 11392 1.473434 CGATTCCTAGGGTCTTGCCAC 60.473 57.143 9.46 0.00 39.65 5.01
3689 11393 0.830648 CGATTCCTAGGGTCTTGCCA 59.169 55.000 9.46 0.00 39.65 4.92
3690 11394 1.069358 CTCGATTCCTAGGGTCTTGCC 59.931 57.143 9.46 0.00 0.00 4.52
3691 11395 1.757699 ACTCGATTCCTAGGGTCTTGC 59.242 52.381 9.46 0.00 0.00 4.01
3692 11396 2.482142 GCACTCGATTCCTAGGGTCTTG 60.482 54.545 9.46 6.43 0.00 3.02
3693 11397 1.757699 GCACTCGATTCCTAGGGTCTT 59.242 52.381 9.46 0.00 0.00 3.01
3694 11398 1.342076 TGCACTCGATTCCTAGGGTCT 60.342 52.381 9.46 0.00 0.00 3.85
3695 11399 1.112113 TGCACTCGATTCCTAGGGTC 58.888 55.000 9.46 6.97 0.00 4.46
3696 11400 1.794714 ATGCACTCGATTCCTAGGGT 58.205 50.000 9.46 0.00 0.00 4.34
3697 11401 4.336889 TTTATGCACTCGATTCCTAGGG 57.663 45.455 9.46 0.00 0.00 3.53
3698 11402 5.406780 GTGATTTATGCACTCGATTCCTAGG 59.593 44.000 0.82 0.82 33.57 3.02
3699 11403 5.406780 GGTGATTTATGCACTCGATTCCTAG 59.593 44.000 0.00 0.00 36.53 3.02
3700 11404 5.163353 TGGTGATTTATGCACTCGATTCCTA 60.163 40.000 0.00 0.00 36.53 2.94
3701 11405 4.130118 GGTGATTTATGCACTCGATTCCT 58.870 43.478 0.00 0.00 36.53 3.36
3702 11406 3.876914 TGGTGATTTATGCACTCGATTCC 59.123 43.478 0.00 0.00 36.53 3.01
3703 11407 4.572389 ACTGGTGATTTATGCACTCGATTC 59.428 41.667 0.00 0.00 36.53 2.52
3704 11408 4.517285 ACTGGTGATTTATGCACTCGATT 58.483 39.130 0.00 0.00 36.53 3.34
3705 11409 4.142609 ACTGGTGATTTATGCACTCGAT 57.857 40.909 0.00 0.00 36.53 3.59
3706 11410 3.610040 ACTGGTGATTTATGCACTCGA 57.390 42.857 0.00 0.00 36.53 4.04
3707 11411 4.651994 GAAACTGGTGATTTATGCACTCG 58.348 43.478 0.00 0.00 36.53 4.18
3708 11412 4.154195 ACGAAACTGGTGATTTATGCACTC 59.846 41.667 0.00 0.00 36.53 3.51
3709 11413 4.072131 ACGAAACTGGTGATTTATGCACT 58.928 39.130 0.00 0.00 36.53 4.40
3710 11414 4.419522 ACGAAACTGGTGATTTATGCAC 57.580 40.909 0.00 0.00 35.56 4.57
3711 11415 4.277174 ACAACGAAACTGGTGATTTATGCA 59.723 37.500 0.00 0.00 0.00 3.96
3712 11416 4.794169 ACAACGAAACTGGTGATTTATGC 58.206 39.130 0.00 0.00 0.00 3.14
3713 11417 6.079763 CAGACAACGAAACTGGTGATTTATG 58.920 40.000 0.00 0.00 0.00 1.90
3714 11418 5.181245 CCAGACAACGAAACTGGTGATTTAT 59.819 40.000 0.00 0.00 44.06 1.40
3715 11419 4.513692 CCAGACAACGAAACTGGTGATTTA 59.486 41.667 0.00 0.00 44.06 1.40
3716 11420 3.315191 CCAGACAACGAAACTGGTGATTT 59.685 43.478 0.00 0.00 44.06 2.17
3717 11421 2.878406 CCAGACAACGAAACTGGTGATT 59.122 45.455 0.00 0.00 44.06 2.57
3718 11422 2.494059 CCAGACAACGAAACTGGTGAT 58.506 47.619 0.00 0.00 44.06 3.06
3719 11423 1.948104 CCAGACAACGAAACTGGTGA 58.052 50.000 0.00 0.00 44.06 4.02
3723 11427 5.168526 TGAAATTCCAGACAACGAAACTG 57.831 39.130 0.00 0.00 0.00 3.16
3724 11428 6.391227 AATGAAATTCCAGACAACGAAACT 57.609 33.333 0.00 0.00 0.00 2.66
3725 11429 6.475402 ACAAATGAAATTCCAGACAACGAAAC 59.525 34.615 0.00 0.00 33.67 2.78
3726 11430 6.475076 CACAAATGAAATTCCAGACAACGAAA 59.525 34.615 0.00 0.00 33.67 3.46
3727 11431 5.976534 CACAAATGAAATTCCAGACAACGAA 59.023 36.000 0.00 0.00 33.67 3.85
3728 11432 5.067153 ACACAAATGAAATTCCAGACAACGA 59.933 36.000 0.00 0.00 33.67 3.85
3729 11433 5.280945 ACACAAATGAAATTCCAGACAACG 58.719 37.500 0.00 0.00 33.67 4.10
3730 11434 7.277539 TCAAACACAAATGAAATTCCAGACAAC 59.722 33.333 0.00 0.00 33.67 3.32
3731 11435 7.326454 TCAAACACAAATGAAATTCCAGACAA 58.674 30.769 0.00 0.00 33.67 3.18
3732 11436 6.871844 TCAAACACAAATGAAATTCCAGACA 58.128 32.000 0.00 0.00 33.67 3.41
3733 11437 7.951530 ATCAAACACAAATGAAATTCCAGAC 57.048 32.000 0.00 0.00 33.67 3.51
3734 11438 8.859090 AGTATCAAACACAAATGAAATTCCAGA 58.141 29.630 0.00 0.00 33.67 3.86
3735 11439 8.918658 CAGTATCAAACACAAATGAAATTCCAG 58.081 33.333 0.00 0.00 33.67 3.86
3736 11440 8.637099 TCAGTATCAAACACAAATGAAATTCCA 58.363 29.630 0.00 0.00 33.67 3.53
3737 11441 9.132521 CTCAGTATCAAACACAAATGAAATTCC 57.867 33.333 0.00 0.00 33.67 3.01
3738 11442 9.683069 ACTCAGTATCAAACACAAATGAAATTC 57.317 29.630 0.00 0.00 33.67 2.17
3740 11444 9.683069 GAACTCAGTATCAAACACAAATGAAAT 57.317 29.630 0.00 0.00 0.00 2.17
3741 11445 8.681806 TGAACTCAGTATCAAACACAAATGAAA 58.318 29.630 0.00 0.00 0.00 2.69
3742 11446 8.219546 TGAACTCAGTATCAAACACAAATGAA 57.780 30.769 0.00 0.00 0.00 2.57
3743 11447 7.714813 TCTGAACTCAGTATCAAACACAAATGA 59.285 33.333 6.61 0.00 44.12 2.57
3744 11448 7.864686 TCTGAACTCAGTATCAAACACAAATG 58.135 34.615 6.61 0.00 44.12 2.32
3745 11449 8.627208 ATCTGAACTCAGTATCAAACACAAAT 57.373 30.769 6.61 0.00 44.12 2.32
3746 11450 9.554395 TTATCTGAACTCAGTATCAAACACAAA 57.446 29.630 6.61 0.00 44.12 2.83
3747 11451 9.208022 CTTATCTGAACTCAGTATCAAACACAA 57.792 33.333 6.61 0.00 44.12 3.33
3748 11452 8.367911 ACTTATCTGAACTCAGTATCAAACACA 58.632 33.333 6.61 0.00 44.12 3.72
3749 11453 8.764524 ACTTATCTGAACTCAGTATCAAACAC 57.235 34.615 6.61 0.00 44.12 3.32
3750 11454 8.807118 AGACTTATCTGAACTCAGTATCAAACA 58.193 33.333 6.61 0.00 44.12 2.83
3751 11455 9.646427 AAGACTTATCTGAACTCAGTATCAAAC 57.354 33.333 6.61 0.00 44.12 2.93
3754 11458 9.462606 TGTAAGACTTATCTGAACTCAGTATCA 57.537 33.333 6.61 0.00 44.12 2.15
3760 11464 9.996554 TCAAAATGTAAGACTTATCTGAACTCA 57.003 29.630 0.00 0.00 34.48 3.41
3782 11486 9.123902 CCATATGTCTCCTGTTTTGATATCAAA 57.876 33.333 23.86 23.86 43.36 2.69
3783 11487 8.274322 ACCATATGTCTCCTGTTTTGATATCAA 58.726 33.333 14.23 14.23 0.00 2.57
3784 11488 7.805163 ACCATATGTCTCCTGTTTTGATATCA 58.195 34.615 0.00 0.00 0.00 2.15
3785 11489 7.116948 CGACCATATGTCTCCTGTTTTGATATC 59.883 40.741 1.24 0.00 42.13 1.63
3786 11490 6.931281 CGACCATATGTCTCCTGTTTTGATAT 59.069 38.462 1.24 0.00 42.13 1.63
3787 11491 6.280643 CGACCATATGTCTCCTGTTTTGATA 58.719 40.000 1.24 0.00 42.13 2.15
3788 11492 5.118990 CGACCATATGTCTCCTGTTTTGAT 58.881 41.667 1.24 0.00 42.13 2.57
3789 11493 4.503910 CGACCATATGTCTCCTGTTTTGA 58.496 43.478 1.24 0.00 42.13 2.69
3790 11494 3.063997 GCGACCATATGTCTCCTGTTTTG 59.936 47.826 1.24 0.00 42.13 2.44
3791 11495 3.270877 GCGACCATATGTCTCCTGTTTT 58.729 45.455 1.24 0.00 42.13 2.43
3792 11496 2.420129 GGCGACCATATGTCTCCTGTTT 60.420 50.000 1.24 0.00 44.08 2.83
3793 11497 1.139058 GGCGACCATATGTCTCCTGTT 59.861 52.381 1.24 0.00 44.08 3.16
3794 11498 0.753262 GGCGACCATATGTCTCCTGT 59.247 55.000 1.24 0.00 44.08 4.00
3795 11499 3.595691 GGCGACCATATGTCTCCTG 57.404 57.895 1.24 0.00 44.08 3.86
3812 11516 4.135153 CGTGTCGCCAGAGGAGGG 62.135 72.222 0.00 0.00 0.00 4.30
3813 11517 4.135153 CCGTGTCGCCAGAGGAGG 62.135 72.222 0.00 0.00 0.00 4.30
3814 11518 4.135153 CCCGTGTCGCCAGAGGAG 62.135 72.222 0.00 0.00 0.00 3.69
3837 11541 4.514577 CTAGTGGTGGCGGCGAGG 62.515 72.222 12.98 0.00 0.00 4.63
3844 11548 3.689002 GAGGCCTGCTAGTGGTGGC 62.689 68.421 12.00 8.29 44.22 5.01
3845 11549 1.965754 GAGAGGCCTGCTAGTGGTGG 61.966 65.000 12.00 0.00 0.00 4.61
3846 11550 1.519719 GAGAGGCCTGCTAGTGGTG 59.480 63.158 12.00 0.00 0.00 4.17
3847 11551 1.687493 GGAGAGGCCTGCTAGTGGT 60.687 63.158 12.00 0.00 0.00 4.16
3848 11552 2.790791 CGGAGAGGCCTGCTAGTGG 61.791 68.421 12.00 0.00 0.00 4.00
3849 11553 2.811101 CGGAGAGGCCTGCTAGTG 59.189 66.667 12.00 0.00 0.00 2.74
3850 11554 3.151022 GCGGAGAGGCCTGCTAGT 61.151 66.667 12.00 0.00 34.66 2.57
3945 11649 1.227205 GCGTGAGGAGGCAGATCTG 60.227 63.158 18.84 18.84 32.98 2.90
3946 11650 2.430610 GGCGTGAGGAGGCAGATCT 61.431 63.158 0.00 0.00 34.50 2.75
3947 11651 2.107953 GGCGTGAGGAGGCAGATC 59.892 66.667 0.00 0.00 34.50 2.75
3948 11652 3.474570 GGGCGTGAGGAGGCAGAT 61.475 66.667 0.00 0.00 34.50 2.90
4028 11732 4.880537 CTAGCGCCGCTGGACCAG 62.881 72.222 23.97 17.83 39.54 4.00
4037 11741 4.344474 GGACCGGATCTAGCGCCG 62.344 72.222 9.46 14.02 46.80 6.46
4038 11742 2.913060 AGGACCGGATCTAGCGCC 60.913 66.667 9.46 0.00 0.00 6.53
4039 11743 2.646143 GAGGACCGGATCTAGCGC 59.354 66.667 9.46 0.00 0.00 5.92
4040 11744 1.528542 TGGAGGACCGGATCTAGCG 60.529 63.158 9.46 0.00 39.42 4.26
4041 11745 1.797211 CGTGGAGGACCGGATCTAGC 61.797 65.000 9.46 0.00 39.42 3.42
4042 11746 0.179026 TCGTGGAGGACCGGATCTAG 60.179 60.000 9.46 0.00 39.42 2.43
4043 11747 0.465097 GTCGTGGAGGACCGGATCTA 60.465 60.000 9.46 0.00 39.42 1.98
4044 11748 1.753463 GTCGTGGAGGACCGGATCT 60.753 63.158 9.46 4.39 39.42 2.75
4045 11749 1.601419 TTGTCGTGGAGGACCGGATC 61.601 60.000 9.46 2.51 39.42 3.36
4046 11750 1.608336 TTGTCGTGGAGGACCGGAT 60.608 57.895 9.46 0.00 39.42 4.18
4047 11751 2.203523 TTGTCGTGGAGGACCGGA 60.204 61.111 9.46 0.00 39.42 5.14
4048 11752 2.048503 GTTGTCGTGGAGGACCGG 60.049 66.667 0.00 0.00 39.42 5.28
4049 11753 2.048503 GGTTGTCGTGGAGGACCG 60.049 66.667 0.00 0.00 39.42 4.79
4050 11754 0.320508 GAAGGTTGTCGTGGAGGACC 60.321 60.000 0.00 0.00 36.07 4.46
4051 11755 0.680061 AGAAGGTTGTCGTGGAGGAC 59.320 55.000 0.00 0.00 37.45 3.85
4052 11756 0.679505 CAGAAGGTTGTCGTGGAGGA 59.320 55.000 0.00 0.00 0.00 3.71
4053 11757 0.951040 GCAGAAGGTTGTCGTGGAGG 60.951 60.000 0.00 0.00 0.00 4.30
4054 11758 1.284982 CGCAGAAGGTTGTCGTGGAG 61.285 60.000 0.00 0.00 0.00 3.86
4055 11759 1.300620 CGCAGAAGGTTGTCGTGGA 60.301 57.895 0.00 0.00 0.00 4.02
4056 11760 2.954753 GCGCAGAAGGTTGTCGTGG 61.955 63.158 0.30 0.00 0.00 4.94
4057 11761 2.551270 GCGCAGAAGGTTGTCGTG 59.449 61.111 0.30 0.00 0.00 4.35
4058 11762 3.036084 CGCGCAGAAGGTTGTCGT 61.036 61.111 8.75 0.00 0.00 4.34
4059 11763 3.777925 CCGCGCAGAAGGTTGTCG 61.778 66.667 8.75 0.00 0.00 4.35
4060 11764 1.696832 GATCCGCGCAGAAGGTTGTC 61.697 60.000 8.75 0.00 0.00 3.18
4061 11765 1.741770 GATCCGCGCAGAAGGTTGT 60.742 57.895 8.75 0.00 0.00 3.32
4062 11766 2.464459 GGATCCGCGCAGAAGGTTG 61.464 63.158 8.75 0.00 0.00 3.77
4063 11767 2.125106 GGATCCGCGCAGAAGGTT 60.125 61.111 8.75 0.00 0.00 3.50
4064 11768 4.514577 CGGATCCGCGCAGAAGGT 62.515 66.667 23.37 0.00 0.00 3.50
4091 11795 3.866582 GCTGAGGATGGTCGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
4092 11796 3.866582 GGCTGAGGATGGTCGGGG 61.867 72.222 0.00 0.00 0.00 5.73
4093 11797 4.227134 CGGCTGAGGATGGTCGGG 62.227 72.222 0.00 0.00 0.00 5.14
4094 11798 4.899239 GCGGCTGAGGATGGTCGG 62.899 72.222 0.00 0.00 0.00 4.79
4095 11799 4.899239 GGCGGCTGAGGATGGTCG 62.899 72.222 0.00 0.00 0.00 4.79
4096 11800 3.785859 TGGCGGCTGAGGATGGTC 61.786 66.667 11.43 0.00 0.00 4.02
4097 11801 4.101448 GTGGCGGCTGAGGATGGT 62.101 66.667 11.43 0.00 0.00 3.55
4117 11821 3.844090 GAGGGAGAGAGGTGGCGC 61.844 72.222 0.00 0.00 0.00 6.53
4118 11822 3.522731 CGAGGGAGAGAGGTGGCG 61.523 72.222 0.00 0.00 0.00 5.69
4119 11823 3.844090 GCGAGGGAGAGAGGTGGC 61.844 72.222 0.00 0.00 0.00 5.01
4120 11824 3.522731 CGCGAGGGAGAGAGGTGG 61.523 72.222 0.00 0.00 0.00 4.61
4121 11825 4.200283 GCGCGAGGGAGAGAGGTG 62.200 72.222 12.10 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.