Multiple sequence alignment - TraesCS5A01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G267800 chr5A 100.000 2417 0 0 1 2417 478881356 478883772 0.000000e+00 4464.0
1 TraesCS5A01G267800 chr5A 93.805 565 32 2 999 1563 478861584 478862145 0.000000e+00 846.0
2 TraesCS5A01G267800 chr5A 87.562 201 19 5 1480 1677 478862143 478862340 6.720000e-56 228.0
3 TraesCS5A01G267800 chr5D 92.073 1047 67 9 530 1563 378128501 378129544 0.000000e+00 1459.0
4 TraesCS5A01G267800 chr5D 86.031 902 72 29 711 1563 378125244 378126140 0.000000e+00 918.0
5 TraesCS5A01G267800 chr5D 90.735 680 57 6 999 1675 378142536 378143212 0.000000e+00 902.0
6 TraesCS5A01G267800 chr5D 91.176 646 41 8 1781 2417 378143244 378143882 0.000000e+00 863.0
7 TraesCS5A01G267800 chr5D 87.601 371 24 14 643 996 378142139 378142504 6.220000e-111 411.0
8 TraesCS5A01G267800 chr5D 88.557 201 17 5 1480 1677 378129542 378129739 3.110000e-59 239.0
9 TraesCS5A01G267800 chr5D 90.909 154 9 3 437 587 378141991 378142142 4.070000e-48 202.0
10 TraesCS5A01G267800 chr5D 88.750 80 9 0 1703 1782 37329061 37328982 5.500000e-17 99.0
11 TraesCS5A01G267800 chr5B 90.313 1053 75 20 642 1677 453688190 453687148 0.000000e+00 1354.0
12 TraesCS5A01G267800 chr5B 90.030 993 66 11 583 1563 453692854 453691883 0.000000e+00 1254.0
13 TraesCS5A01G267800 chr5B 90.158 884 71 10 669 1538 453668822 453667941 0.000000e+00 1136.0
14 TraesCS5A01G267800 chr5B 84.012 1032 98 29 699 1677 453674096 453673079 0.000000e+00 929.0
15 TraesCS5A01G267800 chr5B 94.159 565 32 1 999 1563 453690080 453689517 0.000000e+00 859.0
16 TraesCS5A01G267800 chr5B 87.234 564 50 15 1781 2334 453667810 453667259 7.340000e-175 623.0
17 TraesCS5A01G267800 chr5B 79.512 615 77 28 1781 2380 453691660 453691080 2.250000e-105 392.0
18 TraesCS5A01G267800 chr5B 85.714 371 31 15 643 996 453690477 453690112 2.930000e-99 372.0
19 TraesCS5A01G267800 chr5B 84.541 207 28 3 1781 1986 453687118 453686915 4.070000e-48 202.0
20 TraesCS5A01G267800 chr5B 94.186 86 5 0 1697 1782 134917767 134917852 5.420000e-27 132.0
21 TraesCS5A01G267800 chr5B 94.186 86 4 1 437 521 453724700 453724615 1.950000e-26 130.0
22 TraesCS5A01G267800 chrUn 85.464 915 75 29 702 1563 67015298 67014389 0.000000e+00 900.0
23 TraesCS5A01G267800 chrUn 85.464 915 75 29 702 1563 171261967 171262876 0.000000e+00 900.0
24 TraesCS5A01G267800 chrUn 85.464 915 75 29 702 1563 171300983 171301892 0.000000e+00 900.0
25 TraesCS5A01G267800 chrUn 85.464 915 75 29 702 1563 347092863 347093772 0.000000e+00 900.0
26 TraesCS5A01G267800 chrUn 93.451 565 33 2 999 1563 171254562 171255122 0.000000e+00 835.0
27 TraesCS5A01G267800 chrUn 80.797 552 60 22 721 1228 171274314 171274863 8.100000e-105 390.0
28 TraesCS5A01G267800 chrUn 78.538 424 41 24 702 1077 171297612 171298033 1.440000e-57 233.0
29 TraesCS5A01G267800 chrUn 85.075 201 24 6 1480 1677 171258236 171258433 1.470000e-47 200.0
30 TraesCS5A01G267800 chrUn 85.075 201 23 7 1480 1677 171255120 171255316 5.270000e-47 198.0
31 TraesCS5A01G267800 chrUn 85.075 201 23 7 1480 1677 171272054 171272250 5.270000e-47 198.0
32 TraesCS5A01G267800 chrUn 85.075 201 23 7 1480 1677 171287705 171287901 5.270000e-47 198.0
33 TraesCS5A01G267800 chrUn 84.360 211 24 9 1480 1687 390532389 390532185 5.270000e-47 198.0
34 TraesCS5A01G267800 chrUn 79.153 307 32 18 669 945 171276082 171276386 1.480000e-42 183.0
35 TraesCS5A01G267800 chrUn 78.758 306 35 18 669 945 171286755 171287059 6.870000e-41 178.0
36 TraesCS5A01G267800 chrUn 76.812 276 43 10 721 977 353685041 353685314 4.190000e-28 135.0
37 TraesCS5A01G267800 chrUn 76.449 276 44 10 721 977 171271141 171271414 1.950000e-26 130.0
38 TraesCS5A01G267800 chrUn 94.186 86 4 1 437 521 171273329 171273414 1.950000e-26 130.0
39 TraesCS5A01G267800 chrUn 94.186 86 4 1 437 521 171284002 171284087 1.950000e-26 130.0
40 TraesCS5A01G267800 chrUn 76.449 276 44 10 721 977 360030033 360029760 1.950000e-26 130.0
41 TraesCS5A01G267800 chrUn 91.489 94 7 1 437 529 67013109 67013016 7.010000e-26 128.0
42 TraesCS5A01G267800 chrUn 91.489 94 7 1 437 529 171264156 171264249 7.010000e-26 128.0
43 TraesCS5A01G267800 chrUn 91.489 94 7 1 437 529 171270153 171270246 7.010000e-26 128.0
44 TraesCS5A01G267800 chrUn 91.489 94 7 1 437 529 171280826 171280919 7.010000e-26 128.0
45 TraesCS5A01G267800 chrUn 91.489 94 7 1 437 529 360031021 360030928 7.010000e-26 128.0
46 TraesCS5A01G267800 chrUn 93.023 86 5 1 437 521 353684053 353684138 9.070000e-25 124.0
47 TraesCS5A01G267800 chrUn 90.426 94 8 1 437 529 171303172 171303265 3.260000e-24 122.0
48 TraesCS5A01G267800 chrUn 92.771 83 5 1 437 518 414214542 414214460 4.220000e-23 119.0
49 TraesCS5A01G267800 chr4B 83.772 228 30 6 213 438 242704604 242704826 2.430000e-50 209.0
50 TraesCS5A01G267800 chr3B 85.185 189 21 6 222 408 362904133 362904316 1.140000e-43 187.0
51 TraesCS5A01G267800 chr6D 77.533 227 43 7 214 438 445847467 445847687 1.950000e-26 130.0
52 TraesCS5A01G267800 chr6D 86.585 82 9 2 362 442 312801857 312801777 3.310000e-14 89.8
53 TraesCS5A01G267800 chr7A 90.909 88 8 0 1695 1782 40538156 40538243 4.220000e-23 119.0
54 TraesCS5A01G267800 chr1A 90.110 91 9 0 1698 1788 517102820 517102730 4.220000e-23 119.0
55 TraesCS5A01G267800 chr7D 90.909 88 7 1 1695 1782 41146560 41146646 1.520000e-22 117.0
56 TraesCS5A01G267800 chr7D 82.558 86 15 0 1698 1783 595026561 595026476 2.580000e-10 76.8
57 TraesCS5A01G267800 chr6A 88.889 90 9 1 1697 1785 16471529 16471440 2.540000e-20 110.0
58 TraesCS5A01G267800 chr1B 84.158 101 13 2 337 437 180694212 180694115 7.110000e-16 95.3
59 TraesCS5A01G267800 chr2D 92.063 63 5 0 1698 1760 612958908 612958846 3.310000e-14 89.8
60 TraesCS5A01G267800 chr2D 86.486 74 9 1 1698 1771 552202513 552202585 1.990000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G267800 chr5A 478881356 478883772 2416 False 4464.000000 4464 100.000000 1 2417 1 chr5A.!!$F1 2416
1 TraesCS5A01G267800 chr5A 478861584 478862340 756 False 537.000000 846 90.683500 999 1677 2 chr5A.!!$F2 678
2 TraesCS5A01G267800 chr5D 378125244 378129739 4495 False 872.000000 1459 88.887000 530 1677 3 chr5D.!!$F1 1147
3 TraesCS5A01G267800 chr5D 378141991 378143882 1891 False 594.500000 902 90.105250 437 2417 4 chr5D.!!$F2 1980
4 TraesCS5A01G267800 chr5B 453673079 453674096 1017 True 929.000000 929 84.012000 699 1677 1 chr5B.!!$R1 978
5 TraesCS5A01G267800 chr5B 453667259 453668822 1563 True 879.500000 1136 88.696000 669 2334 2 chr5B.!!$R3 1665
6 TraesCS5A01G267800 chr5B 453686915 453692854 5939 True 738.833333 1354 87.378167 583 2380 6 chr5B.!!$R4 1797
7 TraesCS5A01G267800 chrUn 347092863 347093772 909 False 900.000000 900 85.464000 702 1563 1 chrUn.!!$F1 861
8 TraesCS5A01G267800 chrUn 67013016 67015298 2282 True 514.000000 900 88.476500 437 1563 2 chrUn.!!$R3 1126
9 TraesCS5A01G267800 chrUn 171254562 171264249 9687 False 452.200000 900 88.110800 437 1677 5 chrUn.!!$F2 1240
10 TraesCS5A01G267800 chrUn 171297612 171303265 5653 False 418.333333 900 84.809333 437 1563 3 chrUn.!!$F5 1126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 7210 0.034337 GGTACCTCTGCAACGGTCAA 59.966 55.0 4.06 0.0 34.76 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 15019 0.032678 CTAGCGCATCCCGTTCTCAT 59.967 55.0 11.47 0.0 39.71 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.822132 ATGATGCCAAGCTAGTCTATTCT 57.178 39.130 0.00 0.00 0.00 2.40
23 24 5.620738 TGATGCCAAGCTAGTCTATTCTT 57.379 39.130 0.00 0.00 0.00 2.52
24 25 5.994250 TGATGCCAAGCTAGTCTATTCTTT 58.006 37.500 0.00 0.00 0.00 2.52
25 26 5.819379 TGATGCCAAGCTAGTCTATTCTTTG 59.181 40.000 0.00 0.00 0.00 2.77
26 27 5.420725 TGCCAAGCTAGTCTATTCTTTGA 57.579 39.130 0.00 0.00 0.00 2.69
27 28 5.994250 TGCCAAGCTAGTCTATTCTTTGAT 58.006 37.500 0.00 0.00 0.00 2.57
28 29 7.124573 TGCCAAGCTAGTCTATTCTTTGATA 57.875 36.000 0.00 0.00 0.00 2.15
29 30 7.212976 TGCCAAGCTAGTCTATTCTTTGATAG 58.787 38.462 0.00 0.00 0.00 2.08
30 31 6.147000 GCCAAGCTAGTCTATTCTTTGATAGC 59.853 42.308 0.00 0.00 35.52 2.97
31 32 6.364706 CCAAGCTAGTCTATTCTTTGATAGCG 59.635 42.308 0.00 0.00 39.24 4.26
32 33 6.642707 AGCTAGTCTATTCTTTGATAGCGT 57.357 37.500 0.00 0.00 39.24 5.07
33 34 7.747155 AGCTAGTCTATTCTTTGATAGCGTA 57.253 36.000 0.00 0.00 39.24 4.42
35 36 7.446013 AGCTAGTCTATTCTTTGATAGCGTACT 59.554 37.037 0.00 0.00 39.24 2.73
36 37 8.077386 GCTAGTCTATTCTTTGATAGCGTACTT 58.923 37.037 0.00 0.00 31.15 2.24
37 38 9.953697 CTAGTCTATTCTTTGATAGCGTACTTT 57.046 33.333 0.00 0.00 31.15 2.66
39 40 9.654663 AGTCTATTCTTTGATAGCGTACTTTTT 57.345 29.630 0.00 0.00 31.15 1.94
70 71 9.528018 ACGAAACAAAAGACATGTTATTTTCAT 57.472 25.926 15.81 8.02 39.98 2.57
99 100 5.635417 AGAAGAGAGTAAAAATTGCCTGC 57.365 39.130 0.00 0.00 0.00 4.85
101 102 5.772169 AGAAGAGAGTAAAAATTGCCTGCTT 59.228 36.000 0.00 0.00 0.00 3.91
102 103 6.942576 AGAAGAGAGTAAAAATTGCCTGCTTA 59.057 34.615 0.00 0.00 0.00 3.09
103 104 7.448469 AGAAGAGAGTAAAAATTGCCTGCTTAA 59.552 33.333 0.00 0.00 0.00 1.85
104 105 7.709149 AGAGAGTAAAAATTGCCTGCTTAAT 57.291 32.000 0.00 0.00 0.00 1.40
106 107 9.243105 AGAGAGTAAAAATTGCCTGCTTAATTA 57.757 29.630 0.00 0.00 0.00 1.40
107 108 9.855021 GAGAGTAAAAATTGCCTGCTTAATTAA 57.145 29.630 0.00 0.00 0.00 1.40
109 110 9.418045 GAGTAAAAATTGCCTGCTTAATTAACA 57.582 29.630 0.00 0.00 0.00 2.41
113 114 8.900983 AAAATTGCCTGCTTAATTAACAAGAA 57.099 26.923 0.00 0.00 0.00 2.52
114 115 8.900983 AAATTGCCTGCTTAATTAACAAGAAA 57.099 26.923 0.00 0.00 0.00 2.52
117 118 5.303078 TGCCTGCTTAATTAACAAGAAACCA 59.697 36.000 0.00 0.00 0.00 3.67
118 119 6.183360 TGCCTGCTTAATTAACAAGAAACCAA 60.183 34.615 0.00 0.00 0.00 3.67
119 120 6.704050 GCCTGCTTAATTAACAAGAAACCAAA 59.296 34.615 0.00 0.00 0.00 3.28
140 141 9.830975 ACCAAATTAAAATTGATACAATAGCCC 57.169 29.630 6.06 0.00 0.00 5.19
145 146 8.734218 TTAAAATTGATACAATAGCCCACGTA 57.266 30.769 0.00 0.00 0.00 3.57
146 147 7.633193 AAAATTGATACAATAGCCCACGTAA 57.367 32.000 0.00 0.00 0.00 3.18
147 148 6.613755 AATTGATACAATAGCCCACGTAAC 57.386 37.500 0.00 0.00 0.00 2.50
148 149 4.739587 TGATACAATAGCCCACGTAACA 57.260 40.909 0.00 0.00 0.00 2.41
149 150 5.087391 TGATACAATAGCCCACGTAACAA 57.913 39.130 0.00 0.00 0.00 2.83
150 151 5.113383 TGATACAATAGCCCACGTAACAAG 58.887 41.667 0.00 0.00 0.00 3.16
151 152 3.688694 ACAATAGCCCACGTAACAAGA 57.311 42.857 0.00 0.00 0.00 3.02
152 153 3.596214 ACAATAGCCCACGTAACAAGAG 58.404 45.455 0.00 0.00 0.00 2.85
153 154 2.311124 ATAGCCCACGTAACAAGAGC 57.689 50.000 0.00 0.00 0.00 4.09
154 155 0.970640 TAGCCCACGTAACAAGAGCA 59.029 50.000 0.00 0.00 0.00 4.26
155 156 0.602905 AGCCCACGTAACAAGAGCAC 60.603 55.000 0.00 0.00 0.00 4.40
156 157 1.574702 GCCCACGTAACAAGAGCACC 61.575 60.000 0.00 0.00 0.00 5.01
157 158 1.289109 CCCACGTAACAAGAGCACCG 61.289 60.000 0.00 0.00 0.00 4.94
159 160 1.666872 ACGTAACAAGAGCACCGGC 60.667 57.895 0.00 0.00 41.61 6.13
160 161 1.666553 CGTAACAAGAGCACCGGCA 60.667 57.895 0.00 0.00 44.61 5.69
163 164 1.234615 TAACAAGAGCACCGGCAAGC 61.235 55.000 0.00 3.08 44.61 4.01
165 166 4.314440 AAGAGCACCGGCAAGCGA 62.314 61.111 0.00 0.00 44.61 4.93
176 177 3.052082 CAAGCGACCTGGCCACTG 61.052 66.667 0.00 0.00 0.00 3.66
177 178 3.241530 AAGCGACCTGGCCACTGA 61.242 61.111 0.00 0.00 0.00 3.41
178 179 3.537206 AAGCGACCTGGCCACTGAC 62.537 63.158 0.00 0.00 0.00 3.51
179 180 4.314440 GCGACCTGGCCACTGACA 62.314 66.667 0.00 0.00 0.00 3.58
180 181 2.425592 CGACCTGGCCACTGACAA 59.574 61.111 0.00 0.00 0.00 3.18
181 182 1.669115 CGACCTGGCCACTGACAAG 60.669 63.158 0.00 0.00 0.00 3.16
194 195 1.374758 GACAAGCAGACCACGGAGG 60.375 63.158 0.00 0.00 45.67 4.30
196 197 1.194781 ACAAGCAGACCACGGAGGAT 61.195 55.000 2.94 0.00 41.22 3.24
198 199 1.903877 AAGCAGACCACGGAGGATGG 61.904 60.000 2.94 0.00 43.43 3.51
205 206 1.734163 CCACGGAGGATGGTTACAAC 58.266 55.000 0.00 0.00 41.22 3.32
206 207 1.002659 CCACGGAGGATGGTTACAACA 59.997 52.381 0.00 0.00 41.22 3.33
207 208 2.551287 CCACGGAGGATGGTTACAACAA 60.551 50.000 0.00 0.00 41.22 2.83
208 209 3.142951 CACGGAGGATGGTTACAACAAA 58.857 45.455 0.00 0.00 0.00 2.83
210 211 4.217550 CACGGAGGATGGTTACAACAAAAT 59.782 41.667 0.00 0.00 0.00 1.82
211 212 5.413213 CACGGAGGATGGTTACAACAAAATA 59.587 40.000 0.00 0.00 0.00 1.40
212 213 6.094881 CACGGAGGATGGTTACAACAAAATAT 59.905 38.462 0.00 0.00 0.00 1.28
213 214 6.661805 ACGGAGGATGGTTACAACAAAATATT 59.338 34.615 0.00 0.00 0.00 1.28
214 215 7.830201 ACGGAGGATGGTTACAACAAAATATTA 59.170 33.333 0.00 0.00 0.00 0.98
215 216 8.846211 CGGAGGATGGTTACAACAAAATATTAT 58.154 33.333 0.00 0.00 0.00 1.28
216 217 9.965824 GGAGGATGGTTACAACAAAATATTATG 57.034 33.333 0.00 0.00 0.00 1.90
217 218 9.965824 GAGGATGGTTACAACAAAATATTATGG 57.034 33.333 0.00 0.00 0.00 2.74
218 219 9.487442 AGGATGGTTACAACAAAATATTATGGT 57.513 29.630 0.00 0.00 0.00 3.55
219 220 9.744468 GGATGGTTACAACAAAATATTATGGTC 57.256 33.333 0.00 0.00 0.00 4.02
221 222 8.651589 TGGTTACAACAAAATATTATGGTCCA 57.348 30.769 0.00 0.00 0.00 4.02
222 223 8.744652 TGGTTACAACAAAATATTATGGTCCAG 58.255 33.333 0.00 0.00 0.00 3.86
223 224 8.745590 GGTTACAACAAAATATTATGGTCCAGT 58.254 33.333 0.00 0.00 0.00 4.00
248 249 7.781324 TTTTTGGCTAATTCTTCCAGAATCT 57.219 32.000 0.00 0.00 43.67 2.40
249 250 7.781324 TTTTGGCTAATTCTTCCAGAATCTT 57.219 32.000 0.00 0.00 43.67 2.40
250 251 6.764308 TTGGCTAATTCTTCCAGAATCTTG 57.236 37.500 0.00 0.00 43.67 3.02
251 252 6.065976 TGGCTAATTCTTCCAGAATCTTGA 57.934 37.500 0.00 0.00 43.67 3.02
252 253 6.118170 TGGCTAATTCTTCCAGAATCTTGAG 58.882 40.000 0.00 0.00 43.67 3.02
253 254 6.070021 TGGCTAATTCTTCCAGAATCTTGAGA 60.070 38.462 0.00 0.00 43.67 3.27
254 255 6.825721 GGCTAATTCTTCCAGAATCTTGAGAA 59.174 38.462 0.00 3.30 43.67 2.87
258 259 8.874744 AATTCTTCCAGAATCTTGAGAATTGA 57.125 30.769 17.27 1.02 43.67 2.57
259 260 7.678947 TTCTTCCAGAATCTTGAGAATTGAC 57.321 36.000 0.00 0.00 0.00 3.18
260 261 6.772605 TCTTCCAGAATCTTGAGAATTGACA 58.227 36.000 0.00 0.00 0.00 3.58
261 262 6.652481 TCTTCCAGAATCTTGAGAATTGACAC 59.348 38.462 0.00 0.00 0.00 3.67
262 263 6.119240 TCCAGAATCTTGAGAATTGACACT 57.881 37.500 0.00 0.00 0.00 3.55
263 264 6.537355 TCCAGAATCTTGAGAATTGACACTT 58.463 36.000 0.00 0.00 0.00 3.16
264 265 6.652481 TCCAGAATCTTGAGAATTGACACTTC 59.348 38.462 0.00 0.00 0.00 3.01
265 266 6.429078 CCAGAATCTTGAGAATTGACACTTCA 59.571 38.462 8.11 0.00 0.00 3.02
266 267 7.296660 CAGAATCTTGAGAATTGACACTTCAC 58.703 38.462 8.11 2.71 0.00 3.18
267 268 7.172875 CAGAATCTTGAGAATTGACACTTCACT 59.827 37.037 8.11 0.00 0.00 3.41
270 271 5.987953 TCTTGAGAATTGACACTTCACTCAG 59.012 40.000 8.11 3.45 35.15 3.35
271 272 4.060900 TGAGAATTGACACTTCACTCAGC 58.939 43.478 8.11 0.00 30.97 4.26
272 273 4.202295 TGAGAATTGACACTTCACTCAGCT 60.202 41.667 8.11 0.00 30.97 4.24
274 275 4.754114 AGAATTGACACTTCACTCAGCTTC 59.246 41.667 8.11 0.00 0.00 3.86
275 276 3.827008 TTGACACTTCACTCAGCTTCT 57.173 42.857 0.00 0.00 0.00 2.85
276 277 3.827008 TGACACTTCACTCAGCTTCTT 57.173 42.857 0.00 0.00 0.00 2.52
277 278 4.142609 TGACACTTCACTCAGCTTCTTT 57.857 40.909 0.00 0.00 0.00 2.52
278 279 4.517285 TGACACTTCACTCAGCTTCTTTT 58.483 39.130 0.00 0.00 0.00 2.27
282 283 6.349300 ACACTTCACTCAGCTTCTTTTAGAA 58.651 36.000 0.00 0.00 32.50 2.10
283 284 6.995091 ACACTTCACTCAGCTTCTTTTAGAAT 59.005 34.615 0.00 0.00 33.13 2.40
284 285 7.172361 ACACTTCACTCAGCTTCTTTTAGAATC 59.828 37.037 0.00 0.00 33.13 2.52
285 286 7.387397 CACTTCACTCAGCTTCTTTTAGAATCT 59.613 37.037 0.00 0.00 33.13 2.40
286 287 7.936301 ACTTCACTCAGCTTCTTTTAGAATCTT 59.064 33.333 0.00 0.00 33.13 2.40
288 289 7.220030 TCACTCAGCTTCTTTTAGAATCTTGT 58.780 34.615 0.00 0.00 33.13 3.16
289 290 8.367911 TCACTCAGCTTCTTTTAGAATCTTGTA 58.632 33.333 0.00 0.00 33.13 2.41
290 291 8.439286 CACTCAGCTTCTTTTAGAATCTTGTAC 58.561 37.037 0.00 0.00 33.13 2.90
291 292 7.604545 ACTCAGCTTCTTTTAGAATCTTGTACC 59.395 37.037 0.00 0.00 33.13 3.34
294 295 7.337942 CAGCTTCTTTTAGAATCTTGTACCCAT 59.662 37.037 0.00 0.00 33.13 4.00
295 296 8.548877 AGCTTCTTTTAGAATCTTGTACCCATA 58.451 33.333 0.00 0.00 33.13 2.74
296 297 9.343539 GCTTCTTTTAGAATCTTGTACCCATAT 57.656 33.333 0.00 0.00 33.13 1.78
328 329 9.802039 TTTTACAATCCTAACTGTTTACATCCT 57.198 29.630 0.00 0.00 0.00 3.24
331 332 8.788325 ACAATCCTAACTGTTTACATCCTAAC 57.212 34.615 0.00 0.00 0.00 2.34
332 333 8.603304 ACAATCCTAACTGTTTACATCCTAACT 58.397 33.333 0.00 0.00 0.00 2.24
333 334 9.449719 CAATCCTAACTGTTTACATCCTAACTT 57.550 33.333 0.00 0.00 0.00 2.66
335 336 6.877322 TCCTAACTGTTTACATCCTAACTTGC 59.123 38.462 0.00 0.00 0.00 4.01
336 337 6.879458 CCTAACTGTTTACATCCTAACTTGCT 59.121 38.462 0.00 0.00 0.00 3.91
337 338 8.038944 CCTAACTGTTTACATCCTAACTTGCTA 58.961 37.037 0.00 0.00 0.00 3.49
338 339 7.907214 AACTGTTTACATCCTAACTTGCTAG 57.093 36.000 0.00 0.00 0.00 3.42
339 340 6.407202 ACTGTTTACATCCTAACTTGCTAGG 58.593 40.000 0.00 0.00 40.03 3.02
375 376 7.664552 AAAATGCATATTCAAGATTCTGGGA 57.335 32.000 0.00 0.00 0.00 4.37
377 378 5.635278 TGCATATTCAAGATTCTGGGAGA 57.365 39.130 0.00 0.00 0.00 3.71
378 379 6.005066 TGCATATTCAAGATTCTGGGAGAA 57.995 37.500 0.00 0.00 38.78 2.87
379 380 6.060136 TGCATATTCAAGATTCTGGGAGAAG 58.940 40.000 0.00 0.00 37.69 2.85
380 381 5.048852 GCATATTCAAGATTCTGGGAGAAGC 60.049 44.000 0.00 0.00 40.68 3.86
384 385 3.796764 GATTCTGGGAGAAGCTGGG 57.203 57.895 0.00 0.00 37.62 4.45
385 386 0.915364 GATTCTGGGAGAAGCTGGGT 59.085 55.000 0.00 0.00 37.62 4.51
386 387 0.622665 ATTCTGGGAGAAGCTGGGTG 59.377 55.000 0.00 0.00 37.69 4.61
388 389 0.473694 TCTGGGAGAAGCTGGGTGAA 60.474 55.000 0.00 0.00 0.00 3.18
389 390 0.622665 CTGGGAGAAGCTGGGTGAAT 59.377 55.000 0.00 0.00 0.00 2.57
390 391 0.329261 TGGGAGAAGCTGGGTGAATG 59.671 55.000 0.00 0.00 0.00 2.67
391 392 0.620556 GGGAGAAGCTGGGTGAATGA 59.379 55.000 0.00 0.00 0.00 2.57
392 393 1.213926 GGGAGAAGCTGGGTGAATGAT 59.786 52.381 0.00 0.00 0.00 2.45
393 394 2.357569 GGGAGAAGCTGGGTGAATGATT 60.358 50.000 0.00 0.00 0.00 2.57
394 395 2.686915 GGAGAAGCTGGGTGAATGATTG 59.313 50.000 0.00 0.00 0.00 2.67
395 396 3.614092 GAGAAGCTGGGTGAATGATTGA 58.386 45.455 0.00 0.00 0.00 2.57
396 397 4.205587 GAGAAGCTGGGTGAATGATTGAT 58.794 43.478 0.00 0.00 0.00 2.57
397 398 4.607239 AGAAGCTGGGTGAATGATTGATT 58.393 39.130 0.00 0.00 0.00 2.57
398 399 4.643784 AGAAGCTGGGTGAATGATTGATTC 59.356 41.667 0.00 0.00 40.99 2.52
400 401 4.607239 AGCTGGGTGAATGATTGATTCTT 58.393 39.130 0.00 0.00 41.16 2.52
401 402 5.759059 AGCTGGGTGAATGATTGATTCTTA 58.241 37.500 0.00 0.00 41.16 2.10
402 403 6.189859 AGCTGGGTGAATGATTGATTCTTAA 58.810 36.000 0.00 0.00 41.16 1.85
403 404 6.320672 AGCTGGGTGAATGATTGATTCTTAAG 59.679 38.462 0.00 0.00 41.16 1.85
404 405 6.319658 GCTGGGTGAATGATTGATTCTTAAGA 59.680 38.462 0.00 0.00 41.16 2.10
405 406 7.014038 GCTGGGTGAATGATTGATTCTTAAGAT 59.986 37.037 5.89 0.00 41.16 2.40
408 409 8.355913 GGGTGAATGATTGATTCTTAAGATTCC 58.644 37.037 19.65 9.03 41.16 3.01
409 410 8.906867 GGTGAATGATTGATTCTTAAGATTCCA 58.093 33.333 19.65 12.34 41.16 3.53
420 421 9.091784 GATTCTTAAGATTCCAAAAGAATTGGC 57.908 33.333 5.89 4.84 45.52 4.52
421 422 6.935167 TCTTAAGATTCCAAAAGAATTGGCC 58.065 36.000 0.00 0.00 45.52 5.36
422 423 6.496565 TCTTAAGATTCCAAAAGAATTGGCCA 59.503 34.615 0.00 0.00 45.52 5.36
423 424 5.565455 AAGATTCCAAAAGAATTGGCCAA 57.435 34.783 23.00 23.00 45.52 4.52
424 425 5.565455 AGATTCCAAAAGAATTGGCCAAA 57.435 34.783 24.71 6.13 45.52 3.28
426 427 6.363882 AGATTCCAAAAGAATTGGCCAAAAA 58.636 32.000 24.71 0.00 45.52 1.94
481 1901 0.751643 AACCTGCTGTTGGACGCTTT 60.752 50.000 0.00 0.00 35.31 3.51
520 1941 2.048222 CTCCTCGTGCTTTGGCGA 60.048 61.111 0.00 0.00 42.25 5.54
522 7188 1.699656 CTCCTCGTGCTTTGGCGATG 61.700 60.000 0.00 0.00 42.25 3.84
540 7206 1.445582 GACGGTACCTCTGCAACGG 60.446 63.158 10.90 0.00 0.00 4.44
544 7210 0.034337 GGTACCTCTGCAACGGTCAA 59.966 55.000 4.06 0.00 34.76 3.18
552 7218 1.872952 CTGCAACGGTCAACAGATGAA 59.127 47.619 0.00 0.00 40.50 2.57
573 7239 4.900635 AACAAAACGATCTCTGCTTTGT 57.099 36.364 0.00 0.00 40.87 2.83
578 7244 2.427506 ACGATCTCTGCTTTGTTTCCC 58.572 47.619 0.00 0.00 0.00 3.97
593 7259 2.550180 GTTTCCCTCTTGCAGAACTGTC 59.450 50.000 3.77 0.00 0.00 3.51
619 7285 3.136123 ATTGCTTCCATGCGCGCT 61.136 55.556 33.29 15.19 35.36 5.92
683 7357 5.811613 CCAATAAACGCAATGGTCAATTCAT 59.188 36.000 0.00 0.00 0.00 2.57
708 7416 1.204941 GCGTGACCTACTCAACTCCAT 59.795 52.381 0.00 0.00 0.00 3.41
780 9813 4.153475 GCACGTAATGAGCTAACTCCAAAA 59.847 41.667 0.00 0.00 42.74 2.44
782 9815 6.307155 CACGTAATGAGCTAACTCCAAAAAG 58.693 40.000 0.00 0.00 42.74 2.27
784 9818 5.163754 CGTAATGAGCTAACTCCAAAAAGGG 60.164 44.000 0.00 0.00 42.74 3.95
799 9833 4.848562 AAAAGGGGACGTTCATCTTTTC 57.151 40.909 16.58 0.00 34.32 2.29
807 9844 5.334182 GGGACGTTCATCTTTTCTCTTCAAC 60.334 44.000 0.00 0.00 0.00 3.18
808 9845 5.467063 GGACGTTCATCTTTTCTCTTCAACT 59.533 40.000 0.00 0.00 0.00 3.16
809 9846 6.292389 ACGTTCATCTTTTCTCTTCAACTG 57.708 37.500 0.00 0.00 0.00 3.16
908 9970 0.667993 GCCTGTACAACTTGCAGCAA 59.332 50.000 7.81 7.81 36.64 3.91
959 10021 3.849911 TCTATCACCTTCAACAAGCTCG 58.150 45.455 0.00 0.00 0.00 5.03
1438 13939 3.869832 GGGAGCTACTAGTTAAAAAGGCG 59.130 47.826 0.00 0.00 0.00 5.52
1464 13965 8.697507 AGAAGAATAAAGTCAGTGAATGGTTT 57.302 30.769 0.00 0.00 0.00 3.27
1473 13974 3.758023 TCAGTGAATGGTTTGGCACTATG 59.242 43.478 0.00 0.00 39.40 2.23
1512 14013 8.255206 TGCAGAAGTATATCTTTCCGTTTTCTA 58.745 33.333 0.00 0.00 36.40 2.10
1561 14141 0.106268 TGTTGCTTCCTTTCAGCCCA 60.106 50.000 0.00 0.00 36.33 5.36
1565 14146 1.635487 TGCTTCCTTTCAGCCCATAGT 59.365 47.619 0.00 0.00 36.33 2.12
1600 14184 7.214460 TGAATGAATAACACTTATACCCCCA 57.786 36.000 0.00 0.00 0.00 4.96
1641 14225 2.771943 ACTCTCAACTTCCCACTGTTGA 59.228 45.455 8.04 8.04 46.73 3.18
1663 14248 6.861144 TGATCTATCTTTGTGTGTGAGAGAG 58.139 40.000 0.00 0.00 32.66 3.20
1664 14249 6.660949 TGATCTATCTTTGTGTGTGAGAGAGA 59.339 38.462 0.00 0.18 40.69 3.10
1686 14281 7.839200 AGAGAATAAGGGCCTTAATTAAGCAAA 59.161 33.333 28.61 5.27 29.35 3.68
1688 14283 6.731292 ATAAGGGCCTTAATTAAGCAAAGG 57.269 37.500 28.61 9.31 42.27 3.11
1704 14299 5.644977 GCAAAGGCTGTAAAATACTTCCT 57.355 39.130 0.00 0.00 36.96 3.36
1705 14300 5.641709 GCAAAGGCTGTAAAATACTTCCTC 58.358 41.667 0.00 0.00 36.96 3.71
1706 14301 5.393135 GCAAAGGCTGTAAAATACTTCCTCC 60.393 44.000 0.00 0.00 36.96 4.30
1707 14302 5.514500 AAGGCTGTAAAATACTTCCTCCA 57.486 39.130 0.00 0.00 32.67 3.86
1708 14303 5.717119 AGGCTGTAAAATACTTCCTCCAT 57.283 39.130 0.00 0.00 0.00 3.41
1709 14304 5.685728 AGGCTGTAAAATACTTCCTCCATC 58.314 41.667 0.00 0.00 0.00 3.51
1710 14305 4.822350 GGCTGTAAAATACTTCCTCCATCC 59.178 45.833 0.00 0.00 0.00 3.51
1711 14306 4.822350 GCTGTAAAATACTTCCTCCATCCC 59.178 45.833 0.00 0.00 0.00 3.85
1712 14307 5.631481 GCTGTAAAATACTTCCTCCATCCCA 60.631 44.000 0.00 0.00 0.00 4.37
1713 14308 6.590656 TGTAAAATACTTCCTCCATCCCAT 57.409 37.500 0.00 0.00 0.00 4.00
1714 14309 7.691791 GCTGTAAAATACTTCCTCCATCCCATA 60.692 40.741 0.00 0.00 0.00 2.74
1715 14310 8.108378 TGTAAAATACTTCCTCCATCCCATAA 57.892 34.615 0.00 0.00 0.00 1.90
1716 14311 8.732854 TGTAAAATACTTCCTCCATCCCATAAT 58.267 33.333 0.00 0.00 0.00 1.28
1723 14318 8.940012 ACTTCCTCCATCCCATAATATAAGAT 57.060 34.615 0.00 0.00 0.00 2.40
1724 14319 8.997734 ACTTCCTCCATCCCATAATATAAGATC 58.002 37.037 0.00 0.00 0.00 2.75
1725 14320 8.931904 TTCCTCCATCCCATAATATAAGATCA 57.068 34.615 0.00 0.00 0.00 2.92
1726 14321 9.524903 TTCCTCCATCCCATAATATAAGATCAT 57.475 33.333 0.00 0.00 0.00 2.45
1727 14322 9.524903 TCCTCCATCCCATAATATAAGATCATT 57.475 33.333 0.00 0.00 0.00 2.57
1760 14355 8.423353 CTGTTTTAGCTTGTAAAACGATCTTC 57.577 34.615 15.21 0.00 45.38 2.87
1761 14356 8.149973 TGTTTTAGCTTGTAAAACGATCTTCT 57.850 30.769 15.21 0.00 45.38 2.85
1762 14357 9.263538 TGTTTTAGCTTGTAAAACGATCTTCTA 57.736 29.630 15.21 0.00 45.38 2.10
1766 14361 7.907214 AGCTTGTAAAACGATCTTCTATTGT 57.093 32.000 0.00 0.00 0.00 2.71
1767 14362 7.743104 AGCTTGTAAAACGATCTTCTATTGTG 58.257 34.615 0.00 0.00 0.00 3.33
1768 14363 6.961554 GCTTGTAAAACGATCTTCTATTGTGG 59.038 38.462 0.00 0.00 0.00 4.17
1769 14364 6.978343 TGTAAAACGATCTTCTATTGTGGG 57.022 37.500 0.00 0.00 0.00 4.61
1770 14365 6.703319 TGTAAAACGATCTTCTATTGTGGGA 58.297 36.000 0.00 0.00 0.00 4.37
1771 14366 7.335627 TGTAAAACGATCTTCTATTGTGGGAT 58.664 34.615 0.00 0.00 0.00 3.85
1772 14367 6.683974 AAAACGATCTTCTATTGTGGGATG 57.316 37.500 0.00 0.00 0.00 3.51
1773 14368 4.342862 ACGATCTTCTATTGTGGGATGG 57.657 45.455 0.00 0.00 0.00 3.51
1774 14369 3.967326 ACGATCTTCTATTGTGGGATGGA 59.033 43.478 0.00 0.00 0.00 3.41
1775 14370 4.039730 ACGATCTTCTATTGTGGGATGGAG 59.960 45.833 0.00 0.00 0.00 3.86
1776 14371 4.562347 CGATCTTCTATTGTGGGATGGAGG 60.562 50.000 0.00 0.00 0.00 4.30
1777 14372 3.048600 TCTTCTATTGTGGGATGGAGGG 58.951 50.000 0.00 0.00 0.00 4.30
1778 14373 2.887454 TCTATTGTGGGATGGAGGGA 57.113 50.000 0.00 0.00 0.00 4.20
1779 14374 2.694397 TCTATTGTGGGATGGAGGGAG 58.306 52.381 0.00 0.00 0.00 4.30
1788 14383 2.509964 GGGATGGAGGGAGTACAACATT 59.490 50.000 0.00 0.00 0.00 2.71
1792 14387 5.104485 GGATGGAGGGAGTACAACATTAACT 60.104 44.000 0.00 0.00 0.00 2.24
1814 14409 7.218228 ACTATGACATGCACAAAAGAATTCA 57.782 32.000 8.44 0.00 0.00 2.57
1847 14442 5.281727 TCTCGGTATCTCGATTTTCATGTG 58.718 41.667 0.00 0.00 38.55 3.21
1848 14443 5.006153 TCGGTATCTCGATTTTCATGTGT 57.994 39.130 0.00 0.00 33.92 3.72
2018 14614 7.715249 CGGAGATTATTTCCAGATTCAAGGTTA 59.285 37.037 2.68 0.00 34.24 2.85
2029 14625 6.540189 CCAGATTCAAGGTTAAGATCGATGTT 59.460 38.462 12.86 12.86 0.00 2.71
2057 14653 5.364778 ACATTTTTGGTTTTCTTAGGCACC 58.635 37.500 0.00 0.00 0.00 5.01
2145 14745 4.712122 TGCAAAGGAAAGAAAAACGAGT 57.288 36.364 0.00 0.00 0.00 4.18
2183 14783 2.623416 AGCAAACCTCAACTAGCCAAAC 59.377 45.455 0.00 0.00 0.00 2.93
2191 14791 4.508662 CTCAACTAGCCAAACCCTAAGAG 58.491 47.826 0.00 0.00 0.00 2.85
2330 14946 5.971202 CACGGCACTTTAAATATTCCATCAC 59.029 40.000 0.00 0.00 0.00 3.06
2368 14984 5.344743 TTGGTTTCAGCCAACATAAAACA 57.655 34.783 0.00 0.00 42.98 2.83
2369 14985 4.688021 TGGTTTCAGCCAACATAAAACAC 58.312 39.130 0.00 0.00 35.25 3.32
2392 15019 4.390129 AAGAACTCACCCTCTACTCAGA 57.610 45.455 0.00 0.00 0.00 3.27
2404 15031 4.141287 CTCTACTCAGATGAGAACGGGAT 58.859 47.826 16.52 0.00 44.74 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.051717 TCAAAGAATAGACTAGCTTGGCATC 58.948 40.000 3.21 0.00 0.00 3.91
3 4 5.994250 TCAAAGAATAGACTAGCTTGGCAT 58.006 37.500 3.21 0.00 0.00 4.40
7 8 6.920758 ACGCTATCAAAGAATAGACTAGCTTG 59.079 38.462 0.00 0.00 31.98 4.01
8 9 7.045126 ACGCTATCAAAGAATAGACTAGCTT 57.955 36.000 0.00 0.00 31.98 3.74
9 10 6.642707 ACGCTATCAAAGAATAGACTAGCT 57.357 37.500 0.00 0.00 31.98 3.32
10 11 7.586747 AGTACGCTATCAAAGAATAGACTAGC 58.413 38.462 0.00 0.00 31.98 3.42
13 14 9.654663 AAAAAGTACGCTATCAAAGAATAGACT 57.345 29.630 0.00 0.00 31.98 3.24
43 44 9.360093 TGAAAATAACATGTCTTTTGTTTCGTT 57.640 25.926 18.55 0.00 38.26 3.85
44 45 8.918961 TGAAAATAACATGTCTTTTGTTTCGT 57.081 26.923 18.55 0.33 38.26 3.85
73 74 8.246871 GCAGGCAATTTTTACTCTCTTCTTAAT 58.753 33.333 0.00 0.00 0.00 1.40
74 75 7.448469 AGCAGGCAATTTTTACTCTCTTCTTAA 59.552 33.333 0.00 0.00 0.00 1.85
75 76 6.942576 AGCAGGCAATTTTTACTCTCTTCTTA 59.057 34.615 0.00 0.00 0.00 2.10
76 77 5.772169 AGCAGGCAATTTTTACTCTCTTCTT 59.228 36.000 0.00 0.00 0.00 2.52
78 79 5.635417 AGCAGGCAATTTTTACTCTCTTC 57.365 39.130 0.00 0.00 0.00 2.87
79 80 7.524717 TTAAGCAGGCAATTTTTACTCTCTT 57.475 32.000 0.00 0.00 0.00 2.85
80 81 7.709149 ATTAAGCAGGCAATTTTTACTCTCT 57.291 32.000 0.00 0.00 0.00 3.10
81 82 9.855021 TTAATTAAGCAGGCAATTTTTACTCTC 57.145 29.630 0.00 0.00 0.00 3.20
82 83 9.639601 GTTAATTAAGCAGGCAATTTTTACTCT 57.360 29.630 0.00 0.00 0.00 3.24
86 87 9.988815 TCTTGTTAATTAAGCAGGCAATTTTTA 57.011 25.926 0.00 0.00 0.00 1.52
87 88 8.900983 TCTTGTTAATTAAGCAGGCAATTTTT 57.099 26.923 0.00 0.00 0.00 1.94
88 89 8.900983 TTCTTGTTAATTAAGCAGGCAATTTT 57.099 26.923 0.00 0.00 0.00 1.82
89 90 8.773645 GTTTCTTGTTAATTAAGCAGGCAATTT 58.226 29.630 0.00 0.00 0.00 1.82
90 91 7.387673 GGTTTCTTGTTAATTAAGCAGGCAATT 59.612 33.333 0.00 0.00 0.00 2.32
91 92 6.873605 GGTTTCTTGTTAATTAAGCAGGCAAT 59.126 34.615 0.00 0.00 0.00 3.56
92 93 6.183360 TGGTTTCTTGTTAATTAAGCAGGCAA 60.183 34.615 0.00 0.00 0.00 4.52
93 94 5.303078 TGGTTTCTTGTTAATTAAGCAGGCA 59.697 36.000 0.00 0.00 0.00 4.75
94 95 5.778862 TGGTTTCTTGTTAATTAAGCAGGC 58.221 37.500 0.00 0.00 0.00 4.85
95 96 8.831715 ATTTGGTTTCTTGTTAATTAAGCAGG 57.168 30.769 0.00 1.61 0.00 4.85
114 115 9.830975 GGGCTATTGTATCAATTTTAATTTGGT 57.169 29.630 0.37 0.00 0.00 3.67
117 118 9.528018 CGTGGGCTATTGTATCAATTTTAATTT 57.472 29.630 0.37 0.00 0.00 1.82
118 119 8.691797 ACGTGGGCTATTGTATCAATTTTAATT 58.308 29.630 0.00 0.00 0.00 1.40
119 120 8.232913 ACGTGGGCTATTGTATCAATTTTAAT 57.767 30.769 0.00 0.00 0.00 1.40
122 123 7.121463 TGTTACGTGGGCTATTGTATCAATTTT 59.879 33.333 0.00 0.00 0.00 1.82
123 124 6.600032 TGTTACGTGGGCTATTGTATCAATTT 59.400 34.615 0.00 0.00 0.00 1.82
124 125 6.116806 TGTTACGTGGGCTATTGTATCAATT 58.883 36.000 0.00 0.00 0.00 2.32
127 128 4.739587 TGTTACGTGGGCTATTGTATCA 57.260 40.909 0.00 0.00 0.00 2.15
131 132 3.596214 CTCTTGTTACGTGGGCTATTGT 58.404 45.455 0.00 0.00 0.00 2.71
132 133 2.351726 GCTCTTGTTACGTGGGCTATTG 59.648 50.000 0.00 0.00 0.00 1.90
133 134 2.027561 TGCTCTTGTTACGTGGGCTATT 60.028 45.455 0.00 0.00 0.00 1.73
136 137 0.602905 GTGCTCTTGTTACGTGGGCT 60.603 55.000 0.00 0.00 0.00 5.19
138 139 1.289109 CGGTGCTCTTGTTACGTGGG 61.289 60.000 0.00 0.00 0.00 4.61
139 140 1.289109 CCGGTGCTCTTGTTACGTGG 61.289 60.000 0.00 0.00 0.00 4.94
140 141 1.897398 GCCGGTGCTCTTGTTACGTG 61.897 60.000 1.90 0.00 33.53 4.49
142 143 1.225376 TTGCCGGTGCTCTTGTTACG 61.225 55.000 1.90 0.00 38.71 3.18
145 146 2.555547 GCTTGCCGGTGCTCTTGTT 61.556 57.895 1.90 0.00 38.71 2.83
146 147 2.980233 GCTTGCCGGTGCTCTTGT 60.980 61.111 1.90 0.00 38.71 3.16
147 148 4.093952 CGCTTGCCGGTGCTCTTG 62.094 66.667 1.90 0.00 38.71 3.02
148 149 4.314440 TCGCTTGCCGGTGCTCTT 62.314 61.111 1.90 0.00 38.71 2.85
159 160 3.052082 CAGTGGCCAGGTCGCTTG 61.052 66.667 5.11 0.00 0.00 4.01
160 161 3.241530 TCAGTGGCCAGGTCGCTT 61.242 61.111 5.11 0.00 0.00 4.68
163 164 1.669115 CTTGTCAGTGGCCAGGTCG 60.669 63.158 5.11 0.00 0.00 4.79
165 166 2.113986 GCTTGTCAGTGGCCAGGT 59.886 61.111 5.11 0.00 0.00 4.00
166 167 1.970114 CTGCTTGTCAGTGGCCAGG 60.970 63.158 5.11 0.51 38.02 4.45
167 168 1.071987 TCTGCTTGTCAGTGGCCAG 59.928 57.895 5.11 0.00 43.32 4.85
169 170 1.968540 GGTCTGCTTGTCAGTGGCC 60.969 63.158 0.00 0.00 43.32 5.36
171 172 1.224069 CGTGGTCTGCTTGTCAGTGG 61.224 60.000 0.00 0.00 43.32 4.00
172 173 1.224069 CCGTGGTCTGCTTGTCAGTG 61.224 60.000 0.00 0.00 43.32 3.66
173 174 1.069765 CCGTGGTCTGCTTGTCAGT 59.930 57.895 0.00 0.00 43.32 3.41
174 175 0.668706 CTCCGTGGTCTGCTTGTCAG 60.669 60.000 0.00 0.00 44.21 3.51
175 176 1.367471 CTCCGTGGTCTGCTTGTCA 59.633 57.895 0.00 0.00 0.00 3.58
176 177 1.374758 CCTCCGTGGTCTGCTTGTC 60.375 63.158 0.00 0.00 0.00 3.18
177 178 1.194781 ATCCTCCGTGGTCTGCTTGT 61.195 55.000 0.00 0.00 37.07 3.16
178 179 0.742281 CATCCTCCGTGGTCTGCTTG 60.742 60.000 0.00 0.00 37.07 4.01
179 180 1.599047 CATCCTCCGTGGTCTGCTT 59.401 57.895 0.00 0.00 37.07 3.91
180 181 2.362369 CCATCCTCCGTGGTCTGCT 61.362 63.158 0.00 0.00 37.07 4.24
181 182 2.187946 CCATCCTCCGTGGTCTGC 59.812 66.667 0.00 0.00 37.07 4.26
186 187 1.002659 TGTTGTAACCATCCTCCGTGG 59.997 52.381 0.00 0.00 42.55 4.94
187 188 2.465860 TGTTGTAACCATCCTCCGTG 57.534 50.000 0.00 0.00 0.00 4.94
189 190 6.693315 ATATTTTGTTGTAACCATCCTCCG 57.307 37.500 0.00 0.00 0.00 4.63
191 192 9.965824 CCATAATATTTTGTTGTAACCATCCTC 57.034 33.333 5.36 0.00 0.00 3.71
194 195 9.744468 GGACCATAATATTTTGTTGTAACCATC 57.256 33.333 5.36 0.00 0.00 3.51
196 197 8.651589 TGGACCATAATATTTTGTTGTAACCA 57.348 30.769 5.36 0.00 0.00 3.67
236 237 6.652481 GTGTCAATTCTCAAGATTCTGGAAGA 59.348 38.462 0.00 0.00 44.68 2.87
237 238 6.654161 AGTGTCAATTCTCAAGATTCTGGAAG 59.346 38.462 0.00 0.00 0.00 3.46
238 239 6.537355 AGTGTCAATTCTCAAGATTCTGGAA 58.463 36.000 0.00 0.00 0.00 3.53
239 240 6.119240 AGTGTCAATTCTCAAGATTCTGGA 57.881 37.500 0.00 0.00 0.00 3.86
241 242 7.172875 AGTGAAGTGTCAATTCTCAAGATTCTG 59.827 37.037 13.69 0.00 34.87 3.02
242 243 7.222872 AGTGAAGTGTCAATTCTCAAGATTCT 58.777 34.615 13.69 0.00 34.87 2.40
243 244 7.172190 TGAGTGAAGTGTCAATTCTCAAGATTC 59.828 37.037 13.69 4.93 33.67 2.52
244 245 6.994496 TGAGTGAAGTGTCAATTCTCAAGATT 59.006 34.615 13.69 0.00 33.67 2.40
245 246 6.528321 TGAGTGAAGTGTCAATTCTCAAGAT 58.472 36.000 13.69 0.00 33.67 2.40
247 248 5.333952 GCTGAGTGAAGTGTCAATTCTCAAG 60.334 44.000 13.69 11.97 35.27 3.02
248 249 4.512944 GCTGAGTGAAGTGTCAATTCTCAA 59.487 41.667 13.69 3.29 35.27 3.02
249 250 4.060900 GCTGAGTGAAGTGTCAATTCTCA 58.939 43.478 13.69 9.09 34.00 3.27
250 251 4.314121 AGCTGAGTGAAGTGTCAATTCTC 58.686 43.478 13.69 10.23 34.87 2.87
251 252 4.348863 AGCTGAGTGAAGTGTCAATTCT 57.651 40.909 13.69 0.00 34.87 2.40
252 253 4.754114 AGAAGCTGAGTGAAGTGTCAATTC 59.246 41.667 6.07 6.07 34.87 2.17
253 254 4.712476 AGAAGCTGAGTGAAGTGTCAATT 58.288 39.130 0.00 0.00 34.87 2.32
254 255 4.348863 AGAAGCTGAGTGAAGTGTCAAT 57.651 40.909 0.00 0.00 34.87 2.57
258 259 5.918608 TCTAAAAGAAGCTGAGTGAAGTGT 58.081 37.500 0.00 0.00 0.00 3.55
259 260 6.851222 TTCTAAAAGAAGCTGAGTGAAGTG 57.149 37.500 0.00 0.00 29.50 3.16
260 261 7.665561 GATTCTAAAAGAAGCTGAGTGAAGT 57.334 36.000 0.00 0.00 37.62 3.01
270 271 7.631717 ATGGGTACAAGATTCTAAAAGAAGC 57.368 36.000 0.00 0.00 40.68 3.86
302 303 9.802039 AGGATGTAAACAGTTAGGATTGTAAAA 57.198 29.630 0.00 0.00 0.00 1.52
306 307 8.603304 AGTTAGGATGTAAACAGTTAGGATTGT 58.397 33.333 0.00 0.00 0.00 2.71
307 308 9.449719 AAGTTAGGATGTAAACAGTTAGGATTG 57.550 33.333 0.00 0.00 0.00 2.67
308 309 9.449719 CAAGTTAGGATGTAAACAGTTAGGATT 57.550 33.333 0.00 0.00 0.00 3.01
309 310 7.553044 GCAAGTTAGGATGTAAACAGTTAGGAT 59.447 37.037 0.00 0.00 0.00 3.24
311 312 6.879458 AGCAAGTTAGGATGTAAACAGTTAGG 59.121 38.462 0.00 0.00 0.00 2.69
312 313 7.907214 AGCAAGTTAGGATGTAAACAGTTAG 57.093 36.000 0.00 0.00 0.00 2.34
313 314 8.038944 CCTAGCAAGTTAGGATGTAAACAGTTA 58.961 37.037 4.14 0.00 42.39 2.24
314 315 6.879458 CCTAGCAAGTTAGGATGTAAACAGTT 59.121 38.462 4.14 0.00 42.39 3.16
315 316 6.212791 TCCTAGCAAGTTAGGATGTAAACAGT 59.787 38.462 8.41 0.00 43.30 3.55
317 318 6.614694 TCCTAGCAAGTTAGGATGTAAACA 57.385 37.500 8.41 0.00 43.30 2.83
350 351 8.081517 TCCCAGAATCTTGAATATGCATTTTT 57.918 30.769 3.54 0.00 0.00 1.94
351 352 7.562454 TCTCCCAGAATCTTGAATATGCATTTT 59.438 33.333 3.54 2.48 0.00 1.82
352 353 7.064866 TCTCCCAGAATCTTGAATATGCATTT 58.935 34.615 3.54 0.00 0.00 2.32
354 355 6.196918 TCTCCCAGAATCTTGAATATGCAT 57.803 37.500 3.79 3.79 0.00 3.96
355 356 5.635278 TCTCCCAGAATCTTGAATATGCA 57.365 39.130 0.00 0.00 0.00 3.96
356 357 5.048852 GCTTCTCCCAGAATCTTGAATATGC 60.049 44.000 0.00 0.00 33.13 3.14
357 358 6.205076 CAGCTTCTCCCAGAATCTTGAATATG 59.795 42.308 0.00 0.00 33.13 1.78
358 359 6.297582 CAGCTTCTCCCAGAATCTTGAATAT 58.702 40.000 0.00 0.00 33.13 1.28
359 360 5.397221 CCAGCTTCTCCCAGAATCTTGAATA 60.397 44.000 0.00 0.00 33.13 1.75
361 362 3.307975 CCAGCTTCTCCCAGAATCTTGAA 60.308 47.826 0.00 0.00 33.13 2.69
362 363 2.238144 CCAGCTTCTCCCAGAATCTTGA 59.762 50.000 0.00 0.00 33.13 3.02
364 365 1.563410 CCCAGCTTCTCCCAGAATCTT 59.437 52.381 0.00 0.00 33.13 2.40
365 366 1.211456 CCCAGCTTCTCCCAGAATCT 58.789 55.000 0.00 0.00 33.13 2.40
366 367 0.915364 ACCCAGCTTCTCCCAGAATC 59.085 55.000 0.00 0.00 33.13 2.52
367 368 0.622665 CACCCAGCTTCTCCCAGAAT 59.377 55.000 0.00 0.00 33.13 2.40
368 369 0.473694 TCACCCAGCTTCTCCCAGAA 60.474 55.000 0.00 0.00 32.50 3.02
369 370 0.473694 TTCACCCAGCTTCTCCCAGA 60.474 55.000 0.00 0.00 0.00 3.86
370 371 0.622665 ATTCACCCAGCTTCTCCCAG 59.377 55.000 0.00 0.00 0.00 4.45
371 372 0.329261 CATTCACCCAGCTTCTCCCA 59.671 55.000 0.00 0.00 0.00 4.37
373 374 2.686915 CAATCATTCACCCAGCTTCTCC 59.313 50.000 0.00 0.00 0.00 3.71
374 375 3.614092 TCAATCATTCACCCAGCTTCTC 58.386 45.455 0.00 0.00 0.00 2.87
375 376 3.726557 TCAATCATTCACCCAGCTTCT 57.273 42.857 0.00 0.00 0.00 2.85
377 378 4.607239 AGAATCAATCATTCACCCAGCTT 58.393 39.130 0.00 0.00 43.27 3.74
378 379 4.246712 AGAATCAATCATTCACCCAGCT 57.753 40.909 0.00 0.00 43.27 4.24
379 380 4.996788 AAGAATCAATCATTCACCCAGC 57.003 40.909 0.00 0.00 43.27 4.85
380 381 7.870509 TCTTAAGAATCAATCATTCACCCAG 57.129 36.000 1.68 0.00 43.27 4.45
381 382 8.827832 AATCTTAAGAATCAATCATTCACCCA 57.172 30.769 9.71 0.00 43.27 4.51
382 383 8.355913 GGAATCTTAAGAATCAATCATTCACCC 58.644 37.037 19.68 0.00 43.27 4.61
383 384 8.906867 TGGAATCTTAAGAATCAATCATTCACC 58.093 33.333 19.68 2.59 43.27 4.02
394 395 9.091784 GCCAATTCTTTTGGAATCTTAAGAATC 57.908 33.333 9.71 10.71 43.08 2.52
395 396 8.043113 GGCCAATTCTTTTGGAATCTTAAGAAT 58.957 33.333 9.71 0.00 44.76 2.40
396 397 7.016072 TGGCCAATTCTTTTGGAATCTTAAGAA 59.984 33.333 9.71 0.00 43.17 2.52
397 398 6.496565 TGGCCAATTCTTTTGGAATCTTAAGA 59.503 34.615 0.61 7.82 43.17 2.10
398 399 6.700352 TGGCCAATTCTTTTGGAATCTTAAG 58.300 36.000 0.61 0.00 43.17 1.85
400 401 6.678568 TTGGCCAATTCTTTTGGAATCTTA 57.321 33.333 16.05 0.00 43.17 2.10
401 402 5.565455 TTGGCCAATTCTTTTGGAATCTT 57.435 34.783 16.05 0.00 43.17 2.40
402 403 5.565455 TTTGGCCAATTCTTTTGGAATCT 57.435 34.783 21.26 0.00 43.17 2.40
403 404 6.631971 TTTTTGGCCAATTCTTTTGGAATC 57.368 33.333 21.26 0.00 43.17 2.52
424 425 2.525368 GGACATGTAGGCCCAGTTTTT 58.475 47.619 0.00 0.00 40.85 1.94
426 427 3.978876 GGACATGTAGGCCCAGTTT 57.021 52.632 0.00 0.00 40.85 2.66
433 434 2.750815 GTCACGTGGACATGTAGGC 58.249 57.895 17.00 0.00 46.19 3.93
481 1901 4.105537 AGTGATCCCTAGCATGTCTAGAGA 59.894 45.833 19.55 14.65 46.12 3.10
520 1941 0.108804 CGTTGCAGAGGTACCGTCAT 60.109 55.000 6.18 0.00 0.00 3.06
522 7188 1.445582 CCGTTGCAGAGGTACCGTC 60.446 63.158 6.18 4.78 0.00 4.79
540 7206 6.430451 AGATCGTTTTGTTTCATCTGTTGAC 58.570 36.000 0.00 0.00 32.84 3.18
544 7210 5.334414 GCAGAGATCGTTTTGTTTCATCTGT 60.334 40.000 0.00 0.00 35.29 3.41
552 7218 4.900635 ACAAAGCAGAGATCGTTTTGTT 57.099 36.364 7.79 0.00 38.42 2.83
619 7285 1.747355 GAGGTCGAAGGAACCGTATGA 59.253 52.381 0.00 0.00 0.00 2.15
621 7287 1.475682 GTGAGGTCGAAGGAACCGTAT 59.524 52.381 0.00 0.00 0.00 3.06
683 7357 2.299013 AGTTGAGTAGGTCACGCATGAA 59.701 45.455 0.00 0.00 36.78 2.57
708 7416 4.521130 ATGCTGAACTCTAACAGAACGA 57.479 40.909 0.00 0.00 36.38 3.85
780 9813 3.328050 AGAGAAAAGATGAACGTCCCCTT 59.672 43.478 0.00 0.00 0.00 3.95
782 9815 3.336138 AGAGAAAAGATGAACGTCCCC 57.664 47.619 0.00 0.00 0.00 4.81
784 9818 5.467063 AGTTGAAGAGAAAAGATGAACGTCC 59.533 40.000 0.00 0.00 0.00 4.79
799 9833 4.236935 GACTTCTCTCAGCAGTTGAAGAG 58.763 47.826 7.85 7.14 36.12 2.85
807 9844 1.891811 TCTGTGGACTTCTCTCAGCAG 59.108 52.381 0.00 0.00 0.00 4.24
808 9845 2.001076 TCTGTGGACTTCTCTCAGCA 57.999 50.000 0.00 0.00 0.00 4.41
809 9846 2.560542 TCTTCTGTGGACTTCTCTCAGC 59.439 50.000 0.00 0.00 0.00 4.26
908 9970 3.055819 CCGATGGTGCTGCCTTATATAGT 60.056 47.826 0.00 0.00 38.35 2.12
959 10021 4.508662 AGCTAGTTTGCTGGATTGTAGAC 58.491 43.478 0.00 0.00 42.33 2.59
1189 13687 2.607635 TGTTGAACGTGTGCTCTTTCTC 59.392 45.455 0.00 0.00 0.00 2.87
1266 13764 2.500098 CCCGGTGACCTTCTTCATCTTA 59.500 50.000 0.00 0.00 0.00 2.10
1371 13872 2.015588 GCATCATGGGTGTCAGACAGG 61.016 57.143 2.53 0.00 0.00 4.00
1438 13939 7.913674 ACCATTCACTGACTTTATTCTTCTC 57.086 36.000 0.00 0.00 0.00 2.87
1464 13965 2.877097 ACATGTGAACCATAGTGCCA 57.123 45.000 0.00 0.00 30.71 4.92
1473 13974 6.683974 ATACTTCTGCATAACATGTGAACC 57.316 37.500 0.00 0.00 0.00 3.62
1512 14013 6.547141 TGCAGCAGCCTTTTATTAGATTACAT 59.453 34.615 0.00 0.00 41.13 2.29
1600 14184 2.897969 GTGGTCGATGTGGGATATAGGT 59.102 50.000 0.00 0.00 0.00 3.08
1641 14225 7.473735 TTCTCTCTCACACACAAAGATAGAT 57.526 36.000 0.00 0.00 0.00 1.98
1663 14248 7.210174 CCTTTGCTTAATTAAGGCCCTTATTC 58.790 38.462 23.37 6.96 33.95 1.75
1664 14249 7.124573 CCTTTGCTTAATTAAGGCCCTTATT 57.875 36.000 23.37 0.00 33.95 1.40
1686 14281 5.398012 GGATGGAGGAAGTATTTTACAGCCT 60.398 44.000 0.00 0.00 31.92 4.58
1688 14283 4.822350 GGGATGGAGGAAGTATTTTACAGC 59.178 45.833 0.00 0.00 0.00 4.40
1689 14284 6.001449 TGGGATGGAGGAAGTATTTTACAG 57.999 41.667 0.00 0.00 0.00 2.74
1698 14293 8.940012 ATCTTATATTATGGGATGGAGGAAGT 57.060 34.615 0.00 0.00 0.00 3.01
1699 14294 8.996655 TGATCTTATATTATGGGATGGAGGAAG 58.003 37.037 0.00 0.00 0.00 3.46
1700 14295 8.931904 TGATCTTATATTATGGGATGGAGGAA 57.068 34.615 0.00 0.00 0.00 3.36
1701 14296 9.524903 AATGATCTTATATTATGGGATGGAGGA 57.475 33.333 0.00 0.00 0.00 3.71
1735 14330 8.283291 AGAAGATCGTTTTACAAGCTAAAACAG 58.717 33.333 18.63 12.95 43.68 3.16
1736 14331 8.149973 AGAAGATCGTTTTACAAGCTAAAACA 57.850 30.769 18.63 9.57 43.68 2.83
1740 14335 9.431887 ACAATAGAAGATCGTTTTACAAGCTAA 57.568 29.630 0.00 0.00 0.00 3.09
1741 14336 8.869897 CACAATAGAAGATCGTTTTACAAGCTA 58.130 33.333 0.00 0.00 0.00 3.32
1742 14337 7.148407 CCACAATAGAAGATCGTTTTACAAGCT 60.148 37.037 0.00 0.00 0.00 3.74
1743 14338 6.961554 CCACAATAGAAGATCGTTTTACAAGC 59.038 38.462 0.00 0.00 0.00 4.01
1744 14339 7.333423 TCCCACAATAGAAGATCGTTTTACAAG 59.667 37.037 0.00 0.00 0.00 3.16
1745 14340 7.162761 TCCCACAATAGAAGATCGTTTTACAA 58.837 34.615 0.00 0.00 0.00 2.41
1746 14341 6.703319 TCCCACAATAGAAGATCGTTTTACA 58.297 36.000 0.00 0.00 0.00 2.41
1747 14342 7.254795 CCATCCCACAATAGAAGATCGTTTTAC 60.255 40.741 0.00 0.00 0.00 2.01
1748 14343 6.765989 CCATCCCACAATAGAAGATCGTTTTA 59.234 38.462 0.00 0.00 0.00 1.52
1749 14344 5.590259 CCATCCCACAATAGAAGATCGTTTT 59.410 40.000 0.00 0.00 0.00 2.43
1750 14345 5.104527 TCCATCCCACAATAGAAGATCGTTT 60.105 40.000 0.00 0.00 0.00 3.60
1751 14346 4.408921 TCCATCCCACAATAGAAGATCGTT 59.591 41.667 0.00 0.00 0.00 3.85
1752 14347 3.967326 TCCATCCCACAATAGAAGATCGT 59.033 43.478 0.00 0.00 0.00 3.73
1753 14348 4.562347 CCTCCATCCCACAATAGAAGATCG 60.562 50.000 0.00 0.00 0.00 3.69
1754 14349 4.263243 CCCTCCATCCCACAATAGAAGATC 60.263 50.000 0.00 0.00 0.00 2.75
1755 14350 3.654806 CCCTCCATCCCACAATAGAAGAT 59.345 47.826 0.00 0.00 0.00 2.40
1756 14351 3.048600 CCCTCCATCCCACAATAGAAGA 58.951 50.000 0.00 0.00 0.00 2.87
1757 14352 3.048600 TCCCTCCATCCCACAATAGAAG 58.951 50.000 0.00 0.00 0.00 2.85
1758 14353 3.048600 CTCCCTCCATCCCACAATAGAA 58.951 50.000 0.00 0.00 0.00 2.10
1759 14354 2.022035 ACTCCCTCCATCCCACAATAGA 60.022 50.000 0.00 0.00 0.00 1.98
1760 14355 2.412591 ACTCCCTCCATCCCACAATAG 58.587 52.381 0.00 0.00 0.00 1.73
1761 14356 2.587060 ACTCCCTCCATCCCACAATA 57.413 50.000 0.00 0.00 0.00 1.90
1762 14357 2.127708 GTACTCCCTCCATCCCACAAT 58.872 52.381 0.00 0.00 0.00 2.71
1763 14358 1.203376 TGTACTCCCTCCATCCCACAA 60.203 52.381 0.00 0.00 0.00 3.33
1764 14359 0.415830 TGTACTCCCTCCATCCCACA 59.584 55.000 0.00 0.00 0.00 4.17
1765 14360 1.209747 GTTGTACTCCCTCCATCCCAC 59.790 57.143 0.00 0.00 0.00 4.61
1766 14361 1.203376 TGTTGTACTCCCTCCATCCCA 60.203 52.381 0.00 0.00 0.00 4.37
1767 14362 1.580059 TGTTGTACTCCCTCCATCCC 58.420 55.000 0.00 0.00 0.00 3.85
1768 14363 3.933861 AATGTTGTACTCCCTCCATCC 57.066 47.619 0.00 0.00 0.00 3.51
1769 14364 5.990668 AGTTAATGTTGTACTCCCTCCATC 58.009 41.667 0.00 0.00 0.00 3.51
1770 14365 7.347222 TCATAGTTAATGTTGTACTCCCTCCAT 59.653 37.037 0.00 0.00 36.89 3.41
1771 14366 6.670464 TCATAGTTAATGTTGTACTCCCTCCA 59.330 38.462 0.00 0.00 36.89 3.86
1772 14367 6.985059 GTCATAGTTAATGTTGTACTCCCTCC 59.015 42.308 0.00 0.00 36.89 4.30
1773 14368 7.553334 TGTCATAGTTAATGTTGTACTCCCTC 58.447 38.462 0.00 0.00 36.89 4.30
1774 14369 7.490657 TGTCATAGTTAATGTTGTACTCCCT 57.509 36.000 0.00 0.00 36.89 4.20
1775 14370 7.254795 GCATGTCATAGTTAATGTTGTACTCCC 60.255 40.741 0.00 0.00 36.89 4.30
1776 14371 7.279981 TGCATGTCATAGTTAATGTTGTACTCC 59.720 37.037 0.00 0.00 36.89 3.85
1777 14372 8.116753 GTGCATGTCATAGTTAATGTTGTACTC 58.883 37.037 0.00 0.00 36.89 2.59
1778 14373 7.606073 TGTGCATGTCATAGTTAATGTTGTACT 59.394 33.333 0.00 0.00 36.89 2.73
1779 14374 7.747888 TGTGCATGTCATAGTTAATGTTGTAC 58.252 34.615 0.00 0.00 36.89 2.90
1788 14383 8.791675 TGAATTCTTTTGTGCATGTCATAGTTA 58.208 29.630 7.05 0.00 0.00 2.24
1792 14387 9.491675 AATTTGAATTCTTTTGTGCATGTCATA 57.508 25.926 7.05 0.00 0.00 2.15
1814 14409 8.438676 AATCGAGATACCGAGAATCAAAATTT 57.561 30.769 0.00 0.00 42.21 1.82
1885 14480 4.394920 TCCTTGTTTGTTTGAGACACTGAC 59.605 41.667 0.00 0.00 38.18 3.51
2029 14625 9.449719 TGCCTAAGAAAACCAAAAATGTTTTTA 57.550 25.926 3.39 0.00 43.80 1.52
2057 14653 9.993881 CAAGAAGTTGTTTTCGCATAAAAATAG 57.006 29.630 0.00 0.00 31.29 1.73
2122 14721 5.281727 ACTCGTTTTTCTTTCCTTTGCATC 58.718 37.500 0.00 0.00 0.00 3.91
2145 14745 2.653726 TGCTCTGGTTTCTGCTTTTGA 58.346 42.857 0.00 0.00 0.00 2.69
2183 14783 4.553330 TCACTTTTGGTAGCTCTTAGGG 57.447 45.455 0.00 0.00 0.00 3.53
2191 14791 4.864704 TTTCCCATTCACTTTTGGTAGC 57.135 40.909 0.00 0.00 0.00 3.58
2317 14933 9.775854 CTTCAGAGATGTAGTGATGGAATATTT 57.224 33.333 0.00 0.00 0.00 1.40
2330 14946 3.902881 ACCAAGCCTTCAGAGATGTAG 57.097 47.619 0.00 0.00 0.00 2.74
2368 14984 4.223953 TGAGTAGAGGGTGAGTTCTTTGT 58.776 43.478 0.00 0.00 0.00 2.83
2369 14985 4.524714 TCTGAGTAGAGGGTGAGTTCTTTG 59.475 45.833 0.00 0.00 0.00 2.77
2392 15019 0.032678 CTAGCGCATCCCGTTCTCAT 59.967 55.000 11.47 0.00 39.71 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.