Multiple sequence alignment - TraesCS5A01G267200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G267200 chr5A 100.000 4563 0 0 1 4563 478834285 478838847 0.000000e+00 8427.0
1 TraesCS5A01G267200 chr5A 95.122 246 9 3 627 871 636223090 636223333 7.160000e-103 385.0
2 TraesCS5A01G267200 chr5A 79.943 349 53 16 2428 2767 470243293 470242953 1.640000e-59 241.0
3 TraesCS5A01G267200 chr5A 82.828 99 15 2 465 562 469627096 469626999 2.260000e-13 87.9
4 TraesCS5A01G267200 chr5A 97.727 44 1 0 4422 4465 478838663 478838706 4.900000e-10 76.8
5 TraesCS5A01G267200 chr5A 97.727 44 1 0 4379 4422 478838706 478838749 4.900000e-10 76.8
6 TraesCS5A01G267200 chr5B 92.873 2245 120 19 869 3091 451184778 451187004 0.000000e+00 3223.0
7 TraesCS5A01G267200 chr5B 93.818 647 34 3 3090 3736 451187073 451187713 0.000000e+00 968.0
8 TraesCS5A01G267200 chr5B 91.667 660 45 4 3771 4422 451187713 451188370 0.000000e+00 905.0
9 TraesCS5A01G267200 chr5B 81.556 347 50 13 2428 2768 436283635 436283297 1.620000e-69 274.0
10 TraesCS5A01G267200 chr5B 89.583 144 7 4 4425 4560 451188330 451188473 4.690000e-40 176.0
11 TraesCS5A01G267200 chr5B 92.537 67 5 0 565 631 451184714 451184780 3.760000e-16 97.1
12 TraesCS5A01G267200 chr5D 92.636 1969 110 19 869 2813 378027438 378029395 0.000000e+00 2800.0
13 TraesCS5A01G267200 chr5D 93.136 641 39 1 3768 4403 378039038 378039678 0.000000e+00 935.0
14 TraesCS5A01G267200 chr5D 92.627 651 38 5 3090 3736 378038396 378039040 0.000000e+00 928.0
15 TraesCS5A01G267200 chr5D 94.672 244 13 0 2846 3089 378029397 378029640 3.330000e-101 379.0
16 TraesCS5A01G267200 chr5D 79.310 348 56 15 2428 2768 368366393 368366055 3.550000e-56 230.0
17 TraesCS5A01G267200 chr5D 87.402 127 8 1 4442 4560 378039858 378039984 6.160000e-29 139.0
18 TraesCS5A01G267200 chr4A 87.847 576 27 13 5 566 38728452 38727906 1.790000e-178 636.0
19 TraesCS5A01G267200 chr4A 93.676 253 15 1 625 877 104748745 104748494 1.200000e-100 377.0
20 TraesCS5A01G267200 chr3A 87.810 525 20 17 5 514 692538507 692539002 3.960000e-160 575.0
21 TraesCS5A01G267200 chr3A 84.483 58 5 2 181 237 22145356 22145302 2.000000e-03 54.7
22 TraesCS5A01G267200 chr3B 95.082 244 11 1 629 872 742450160 742449918 2.580000e-102 383.0
23 TraesCS5A01G267200 chr2A 95.082 244 11 1 628 871 350400393 350400635 2.580000e-102 383.0
24 TraesCS5A01G267200 chr2A 94.355 248 13 1 624 871 35504557 35504803 3.330000e-101 379.0
25 TraesCS5A01G267200 chr2A 76.382 398 77 14 3263 3655 766328134 766328519 1.000000e-46 198.0
26 TraesCS5A01G267200 chr2A 85.000 60 6 1 181 240 19840905 19840849 1.770000e-04 58.4
27 TraesCS5A01G267200 chr7A 94.715 246 11 2 626 871 534783840 534784083 9.260000e-102 381.0
28 TraesCS5A01G267200 chr7A 94.378 249 12 2 630 878 677684386 677684140 9.260000e-102 381.0
29 TraesCS5A01G267200 chr7A 94.715 246 11 2 630 875 699150275 699150518 9.260000e-102 381.0
30 TraesCS5A01G267200 chr7A 93.651 252 14 2 622 873 705813320 705813569 4.310000e-100 375.0
31 TraesCS5A01G267200 chr7A 97.297 37 1 0 179 215 675877115 675877079 3.810000e-06 63.9
32 TraesCS5A01G267200 chr7A 97.297 37 1 0 179 215 675914990 675914954 3.810000e-06 63.9
33 TraesCS5A01G267200 chr1B 90.000 170 15 1 1 168 439429070 439428901 7.690000e-53 219.0
34 TraesCS5A01G267200 chr1B 81.614 223 38 1 3274 3493 3574420 3574198 1.010000e-41 182.0
35 TraesCS5A01G267200 chr1B 81.081 185 35 0 3271 3455 4207902 4208086 1.020000e-31 148.0
36 TraesCS5A01G267200 chr1B 100.000 31 0 0 536 566 670299419 670299449 1.770000e-04 58.4
37 TraesCS5A01G267200 chr1B 100.000 29 0 0 159 187 439428926 439428898 2.000000e-03 54.7
38 TraesCS5A01G267200 chr6B 80.495 323 26 19 244 531 96645186 96644866 3.580000e-51 213.0
39 TraesCS5A01G267200 chr1A 88.235 170 17 2 1 168 415581033 415580865 2.780000e-47 200.0
40 TraesCS5A01G267200 chr1A 78.378 222 45 2 3274 3492 2569435 2569656 1.710000e-29 141.0
41 TraesCS5A01G267200 chr1A 86.667 60 5 1 181 240 590830260 590830204 3.810000e-06 63.9
42 TraesCS5A01G267200 chr1A 100.000 29 0 0 159 187 415580890 415580862 2.000000e-03 54.7
43 TraesCS5A01G267200 chr2D 75.837 418 83 15 3263 3675 641067578 641067982 3.600000e-46 196.0
44 TraesCS5A01G267200 chr1D 86.550 171 18 4 1 168 326145606 326145438 2.800000e-42 183.0
45 TraesCS5A01G267200 chr1D 75.515 388 85 8 3274 3655 798068 797685 1.010000e-41 182.0
46 TraesCS5A01G267200 chr1D 74.870 386 82 11 3274 3655 625530 625156 1.310000e-35 161.0
47 TraesCS5A01G267200 chr1D 79.730 222 42 2 3274 3492 894238 894017 1.700000e-34 158.0
48 TraesCS5A01G267200 chr1D 72.894 273 59 11 3387 3655 725898 725637 3.780000e-11 80.5
49 TraesCS5A01G267200 chr1D 100.000 29 0 0 159 187 326145463 326145435 2.000000e-03 54.7
50 TraesCS5A01G267200 chr7D 92.683 82 6 0 485 566 8991290 8991209 8.020000e-23 119.0
51 TraesCS5A01G267200 chr7D 100.000 28 0 0 539 566 403100783 403100756 8.000000e-03 52.8
52 TraesCS5A01G267200 chr3D 92.537 67 4 1 1799 1865 119118772 119118707 1.350000e-15 95.3
53 TraesCS5A01G267200 chr2B 91.525 59 5 0 179 237 767947142 767947200 1.050000e-11 82.4
54 TraesCS5A01G267200 chrUn 97.297 37 1 0 179 215 308864735 308864699 3.810000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G267200 chr5A 478834285 478838847 4562 False 2860.200000 8427 98.484667 1 4563 3 chr5A.!!$F2 4562
1 TraesCS5A01G267200 chr5B 451184714 451188473 3759 False 1073.820000 3223 92.095600 565 4560 5 chr5B.!!$F1 3995
2 TraesCS5A01G267200 chr5D 378027438 378029640 2202 False 1589.500000 2800 93.654000 869 3089 2 chr5D.!!$F1 2220
3 TraesCS5A01G267200 chr5D 378038396 378039984 1588 False 667.333333 935 91.055000 3090 4560 3 chr5D.!!$F2 1470
4 TraesCS5A01G267200 chr4A 38727906 38728452 546 True 636.000000 636 87.847000 5 566 1 chr4A.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 806 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.0 0.00 0.0 34.43 6.53 F
846 864 0.175760 GCACGTGGATAGAGGAAGCA 59.824 55.0 18.88 0.0 0.00 3.91 F
2277 2321 0.179094 ATGCCATGCAAGCCAAATCG 60.179 50.0 9.38 0.0 43.62 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2308 0.326595 TACTCCCGATTTGGCTTGCA 59.673 50.0 0.00 0.00 35.87 4.08 R
2310 2354 0.458669 GTGCTCATTTGGATGCTGGG 59.541 55.0 0.00 0.00 33.14 4.45 R
3768 3891 0.981183 AGTACCAAACGAGATGGCCA 59.019 50.0 8.56 8.56 41.89 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 7.859325 TTAGAAAAGGGAATCGATACCAAAG 57.141 36.000 18.16 0.00 0.00 2.77
108 109 2.240493 AGGGAATCGATACCAAAGCG 57.760 50.000 18.16 0.00 0.00 4.68
142 143 3.000874 GCCATGAATCAGGCGAGAAGC 62.001 57.143 7.71 0.00 41.70 3.86
151 152 4.516195 GCGAGAAGCTCCGACCCC 62.516 72.222 7.21 0.00 44.04 4.95
152 153 2.756283 CGAGAAGCTCCGACCCCT 60.756 66.667 0.00 0.00 0.00 4.79
153 154 2.352032 CGAGAAGCTCCGACCCCTT 61.352 63.158 0.00 0.00 0.00 3.95
154 155 1.219393 GAGAAGCTCCGACCCCTTG 59.781 63.158 0.00 0.00 0.00 3.61
155 156 2.436824 GAAGCTCCGACCCCTTGC 60.437 66.667 0.00 0.00 0.00 4.01
156 157 3.978571 GAAGCTCCGACCCCTTGCC 62.979 68.421 0.00 0.00 0.00 4.52
330 334 2.284921 TGCCCTCTGCTGTAGCCT 60.285 61.111 0.80 0.00 42.00 4.58
331 335 2.188994 GCCCTCTGCTGTAGCCTG 59.811 66.667 0.80 0.00 41.18 4.85
376 394 0.535335 TGCGTGTAGGGATGGAGAAC 59.465 55.000 0.00 0.00 0.00 3.01
383 401 2.590092 GGATGGAGAACGTGGGGG 59.410 66.667 0.00 0.00 0.00 5.40
401 419 3.730761 GTGCGACTTGGGCTGCAG 61.731 66.667 10.11 10.11 38.14 4.41
447 465 2.003301 CCTCGTAAGCTTTCTCTTGGC 58.997 52.381 3.20 0.00 37.18 4.52
464 482 3.108521 GCTATATCAGCCACGACCG 57.891 57.895 0.00 0.00 45.23 4.79
477 495 0.899720 ACGACCGGCCAATAGAAAGA 59.100 50.000 0.00 0.00 0.00 2.52
479 497 1.933853 CGACCGGCCAATAGAAAGAAG 59.066 52.381 0.00 0.00 0.00 2.85
511 529 1.995484 CAATCGACGAGCACAGTGAAT 59.005 47.619 4.15 0.00 0.00 2.57
538 556 1.144936 GCATAGCCCAGAGAACGCT 59.855 57.895 0.00 0.00 36.63 5.07
571 589 7.519970 GCGACTGTTAATGGGTTTAATCCATAG 60.520 40.741 10.48 6.68 43.61 2.23
573 591 6.549736 ACTGTTAATGGGTTTAATCCATAGCC 59.450 38.462 10.48 2.06 43.61 3.93
592 610 3.134458 GCCAAAGAAGATAGATCACCCG 58.866 50.000 0.00 0.00 0.00 5.28
595 613 4.993584 CCAAAGAAGATAGATCACCCGATG 59.006 45.833 0.00 0.00 29.66 3.84
598 616 4.474394 AGAAGATAGATCACCCGATGTCA 58.526 43.478 0.00 0.00 29.66 3.58
631 649 5.359756 TGTTGAGTGGATCTGCATATGTAC 58.640 41.667 4.29 0.00 0.00 2.90
634 652 4.281941 TGAGTGGATCTGCATATGTACTCC 59.718 45.833 16.28 7.51 34.06 3.85
635 653 3.580458 AGTGGATCTGCATATGTACTCCC 59.420 47.826 4.29 2.08 0.00 4.30
636 654 3.580458 GTGGATCTGCATATGTACTCCCT 59.420 47.826 4.29 0.00 0.00 4.20
637 655 3.834813 TGGATCTGCATATGTACTCCCTC 59.165 47.826 4.29 0.00 0.00 4.30
638 656 3.196685 GGATCTGCATATGTACTCCCTCC 59.803 52.174 4.29 0.00 0.00 4.30
639 657 2.239400 TCTGCATATGTACTCCCTCCG 58.761 52.381 4.29 0.00 0.00 4.63
640 658 1.964223 CTGCATATGTACTCCCTCCGT 59.036 52.381 4.29 0.00 0.00 4.69
641 659 2.365617 CTGCATATGTACTCCCTCCGTT 59.634 50.000 4.29 0.00 0.00 4.44
642 660 2.364324 TGCATATGTACTCCCTCCGTTC 59.636 50.000 4.29 0.00 0.00 3.95
643 661 2.288886 GCATATGTACTCCCTCCGTTCC 60.289 54.545 4.29 0.00 0.00 3.62
644 662 2.832643 TATGTACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
645 663 1.946984 ATGTACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
646 664 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
647 665 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
648 666 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
649 667 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
650 668 4.472108 TGTACTCCCTCCGTTCCAAAATAT 59.528 41.667 0.00 0.00 0.00 1.28
651 669 5.662208 TGTACTCCCTCCGTTCCAAAATATA 59.338 40.000 0.00 0.00 0.00 0.86
652 670 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
653 671 6.262056 ACTCCCTCCGTTCCAAAATATAAT 57.738 37.500 0.00 0.00 0.00 1.28
654 672 6.062095 ACTCCCTCCGTTCCAAAATATAATG 58.938 40.000 0.00 0.00 0.00 1.90
655 673 4.825085 TCCCTCCGTTCCAAAATATAATGC 59.175 41.667 0.00 0.00 0.00 3.56
656 674 4.320202 CCCTCCGTTCCAAAATATAATGCG 60.320 45.833 0.00 0.00 0.00 4.73
657 675 4.217754 TCCGTTCCAAAATATAATGCGC 57.782 40.909 0.00 0.00 0.00 6.09
658 676 3.003897 TCCGTTCCAAAATATAATGCGCC 59.996 43.478 4.18 0.00 0.00 6.53
659 677 3.004315 CCGTTCCAAAATATAATGCGCCT 59.996 43.478 4.18 0.00 0.00 5.52
660 678 3.974401 CGTTCCAAAATATAATGCGCCTG 59.026 43.478 4.18 0.00 0.00 4.85
661 679 3.641437 TCCAAAATATAATGCGCCTGC 57.359 42.857 4.18 0.00 43.20 4.85
673 691 4.021925 GCCTGCACTTCCCGAGGT 62.022 66.667 0.00 0.00 0.00 3.85
674 692 2.266055 CCTGCACTTCCCGAGGTC 59.734 66.667 0.00 0.00 0.00 3.85
675 693 2.266055 CTGCACTTCCCGAGGTCC 59.734 66.667 0.00 0.00 0.00 4.46
676 694 2.525629 TGCACTTCCCGAGGTCCA 60.526 61.111 0.00 0.00 0.00 4.02
677 695 2.111999 CTGCACTTCCCGAGGTCCAA 62.112 60.000 0.00 0.00 0.00 3.53
678 696 1.671379 GCACTTCCCGAGGTCCAAC 60.671 63.158 0.00 0.00 0.00 3.77
679 697 2.058675 CACTTCCCGAGGTCCAACT 58.941 57.895 0.00 0.00 0.00 3.16
680 698 0.396811 CACTTCCCGAGGTCCAACTT 59.603 55.000 0.00 0.00 0.00 2.66
681 699 1.137697 ACTTCCCGAGGTCCAACTTT 58.862 50.000 0.00 0.00 0.00 2.66
682 700 2.038033 CACTTCCCGAGGTCCAACTTTA 59.962 50.000 0.00 0.00 0.00 1.85
683 701 2.707257 ACTTCCCGAGGTCCAACTTTAA 59.293 45.455 0.00 0.00 0.00 1.52
684 702 3.329814 ACTTCCCGAGGTCCAACTTTAAT 59.670 43.478 0.00 0.00 0.00 1.40
685 703 3.622166 TCCCGAGGTCCAACTTTAATC 57.378 47.619 0.00 0.00 0.00 1.75
686 704 2.907696 TCCCGAGGTCCAACTTTAATCA 59.092 45.455 0.00 0.00 0.00 2.57
687 705 3.521937 TCCCGAGGTCCAACTTTAATCAT 59.478 43.478 0.00 0.00 0.00 2.45
688 706 4.717778 TCCCGAGGTCCAACTTTAATCATA 59.282 41.667 0.00 0.00 0.00 2.15
689 707 5.190132 TCCCGAGGTCCAACTTTAATCATAA 59.810 40.000 0.00 0.00 0.00 1.90
690 708 5.883673 CCCGAGGTCCAACTTTAATCATAAA 59.116 40.000 0.00 0.00 0.00 1.40
691 709 6.546034 CCCGAGGTCCAACTTTAATCATAAAT 59.454 38.462 0.00 0.00 30.88 1.40
692 710 7.068226 CCCGAGGTCCAACTTTAATCATAAATT 59.932 37.037 0.00 0.00 30.88 1.82
693 711 8.466798 CCGAGGTCCAACTTTAATCATAAATTT 58.533 33.333 0.00 0.00 30.88 1.82
707 725 7.931578 ATCATAAATTTAACCAACGAGACCA 57.068 32.000 1.21 0.00 0.00 4.02
708 726 7.747155 TCATAAATTTAACCAACGAGACCAA 57.253 32.000 1.21 0.00 0.00 3.67
709 727 7.586747 TCATAAATTTAACCAACGAGACCAAC 58.413 34.615 1.21 0.00 0.00 3.77
710 728 7.446013 TCATAAATTTAACCAACGAGACCAACT 59.554 33.333 1.21 0.00 0.00 3.16
711 729 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
712 730 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
713 731 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
714 732 2.317609 CCAACGAGACCAACTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
715 733 2.665185 AACGAGACCAACTGCGGC 60.665 61.111 0.00 0.00 0.00 6.53
716 734 4.681978 ACGAGACCAACTGCGGCC 62.682 66.667 0.00 0.00 0.00 6.13
781 799 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
782 800 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
783 801 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
784 802 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
785 803 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
786 804 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
787 805 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
788 806 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
789 807 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
790 808 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
791 809 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
792 810 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
804 822 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
805 823 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
806 824 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
807 825 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
808 826 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
809 827 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
810 828 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
811 829 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
812 830 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
813 831 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
814 832 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
815 833 6.686630 TCGGTCTTGGTAGTTAAATTTACGA 58.313 36.000 0.00 0.00 0.00 3.43
816 834 7.322664 TCGGTCTTGGTAGTTAAATTTACGAT 58.677 34.615 0.00 0.00 0.00 3.73
817 835 7.489113 TCGGTCTTGGTAGTTAAATTTACGATC 59.511 37.037 0.00 0.00 0.00 3.69
818 836 7.276218 CGGTCTTGGTAGTTAAATTTACGATCA 59.724 37.037 0.00 0.00 0.00 2.92
819 837 8.938906 GGTCTTGGTAGTTAAATTTACGATCAA 58.061 33.333 0.00 2.83 0.00 2.57
828 846 9.394477 AGTTAAATTTACGATCAAAGTTGAAGC 57.606 29.630 0.00 0.00 41.13 3.86
829 847 9.176181 GTTAAATTTACGATCAAAGTTGAAGCA 57.824 29.630 0.00 0.00 41.13 3.91
830 848 7.623268 AAATTTACGATCAAAGTTGAAGCAC 57.377 32.000 0.00 0.00 41.13 4.40
831 849 2.949714 ACGATCAAAGTTGAAGCACG 57.050 45.000 0.00 5.15 41.13 5.34
832 850 2.210116 ACGATCAAAGTTGAAGCACGT 58.790 42.857 0.00 5.70 41.13 4.49
833 851 2.032894 ACGATCAAAGTTGAAGCACGTG 60.033 45.455 12.28 12.28 41.13 4.49
834 852 2.662791 CGATCAAAGTTGAAGCACGTGG 60.663 50.000 18.88 0.00 41.13 4.94
835 853 2.031258 TCAAAGTTGAAGCACGTGGA 57.969 45.000 18.88 0.00 33.55 4.02
836 854 2.571212 TCAAAGTTGAAGCACGTGGAT 58.429 42.857 18.88 0.00 33.55 3.41
837 855 3.734463 TCAAAGTTGAAGCACGTGGATA 58.266 40.909 18.88 0.00 33.55 2.59
838 856 3.745975 TCAAAGTTGAAGCACGTGGATAG 59.254 43.478 18.88 0.00 33.55 2.08
839 857 3.678056 AAGTTGAAGCACGTGGATAGA 57.322 42.857 18.88 0.00 0.00 1.98
840 858 3.238108 AGTTGAAGCACGTGGATAGAG 57.762 47.619 18.88 0.00 0.00 2.43
841 859 2.093973 AGTTGAAGCACGTGGATAGAGG 60.094 50.000 18.88 0.00 0.00 3.69
842 860 1.847328 TGAAGCACGTGGATAGAGGA 58.153 50.000 18.88 0.00 0.00 3.71
843 861 2.176045 TGAAGCACGTGGATAGAGGAA 58.824 47.619 18.88 0.00 0.00 3.36
844 862 2.166459 TGAAGCACGTGGATAGAGGAAG 59.834 50.000 18.88 0.00 0.00 3.46
845 863 0.461961 AGCACGTGGATAGAGGAAGC 59.538 55.000 18.88 0.00 0.00 3.86
846 864 0.175760 GCACGTGGATAGAGGAAGCA 59.824 55.000 18.88 0.00 0.00 3.91
847 865 1.927895 CACGTGGATAGAGGAAGCAC 58.072 55.000 7.95 0.00 0.00 4.40
848 866 1.478510 CACGTGGATAGAGGAAGCACT 59.521 52.381 7.95 0.00 0.00 4.40
849 867 2.688446 CACGTGGATAGAGGAAGCACTA 59.312 50.000 7.95 0.00 0.00 2.74
850 868 2.688958 ACGTGGATAGAGGAAGCACTAC 59.311 50.000 0.00 0.00 0.00 2.73
851 869 2.688446 CGTGGATAGAGGAAGCACTACA 59.312 50.000 0.00 0.00 0.00 2.74
852 870 3.319405 CGTGGATAGAGGAAGCACTACAT 59.681 47.826 0.00 0.00 0.00 2.29
853 871 4.202161 CGTGGATAGAGGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
854 872 5.053145 GTGGATAGAGGAAGCACTACATTG 58.947 45.833 0.00 0.00 0.00 2.82
855 873 4.716784 TGGATAGAGGAAGCACTACATTGT 59.283 41.667 0.00 0.00 0.00 2.71
856 874 5.053145 GGATAGAGGAAGCACTACATTGTG 58.947 45.833 0.00 0.00 40.62 3.33
857 875 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
858 876 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
859 877 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
860 878 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
861 879 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
862 880 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
863 881 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
867 885 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
868 886 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
869 887 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
870 888 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
871 889 3.200825 ACATTGTGGAATGGAGGGAGTAG 59.799 47.826 0.00 0.00 43.00 2.57
872 890 2.642171 TGTGGAATGGAGGGAGTAGT 57.358 50.000 0.00 0.00 0.00 2.73
873 891 3.769189 TGTGGAATGGAGGGAGTAGTA 57.231 47.619 0.00 0.00 0.00 1.82
877 895 6.390504 TGTGGAATGGAGGGAGTAGTATAAT 58.609 40.000 0.00 0.00 0.00 1.28
947 974 8.664798 CGTTCTTCACATAACATCCATCTAAAA 58.335 33.333 0.00 0.00 0.00 1.52
1018 1045 2.903135 CCCATGGGTTGTGGTTATGTTT 59.097 45.455 23.93 0.00 34.87 2.83
1039 1066 9.872721 ATGTTTTCATATCAATATTGTTGTGCA 57.127 25.926 14.97 8.84 38.95 4.57
1050 1077 3.773860 TTGTTGTGCATTTCGTTCACT 57.226 38.095 0.00 0.00 0.00 3.41
1058 1085 4.927425 GTGCATTTCGTTCACTCCTTACTA 59.073 41.667 0.00 0.00 0.00 1.82
1070 1097 5.542635 TCACTCCTTACTACATCACTTTGGT 59.457 40.000 0.00 0.00 0.00 3.67
1071 1098 5.869888 CACTCCTTACTACATCACTTTGGTC 59.130 44.000 0.00 0.00 0.00 4.02
1094 1121 3.939740 ATCAACAGATGTAGGTGGCAT 57.060 42.857 0.00 0.00 0.00 4.40
1146 1173 5.163764 TGTGTATTTTTAGCCTTCGATGCAG 60.164 40.000 9.75 0.00 0.00 4.41
1148 1175 4.889832 ATTTTTAGCCTTCGATGCAGAG 57.110 40.909 9.75 0.00 0.00 3.35
1207 1234 4.139786 ACTTGATGATTTGATCCCGATGG 58.860 43.478 0.00 0.00 0.00 3.51
1230 1257 8.138365 TGGTCAATATTATTTGTAGCGAGTTC 57.862 34.615 0.00 0.00 0.00 3.01
1277 1304 7.013559 TGTGCCAGATTATCAATTAGGACATTG 59.986 37.037 0.00 0.00 35.73 2.82
1279 1306 6.716628 GCCAGATTATCAATTAGGACATTGGA 59.283 38.462 0.00 0.00 35.22 3.53
1281 1308 9.305555 CCAGATTATCAATTAGGACATTGGATT 57.694 33.333 0.00 0.00 35.22 3.01
1335 1362 5.239306 TGATGCAACAATTATGCTACTAGCC 59.761 40.000 14.37 0.00 44.14 3.93
1352 1379 7.963465 GCTACTAGCCAAGAACTAACATTTTTC 59.037 37.037 0.00 0.00 34.48 2.29
1374 1401 7.696992 TTCTTTACAGAACACCACTCTTTTT 57.303 32.000 0.00 0.00 33.80 1.94
1471 1500 0.478507 CTCTCTCCCTCCCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
1475 1504 2.015726 TCCCTCCCTCTCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
1479 1508 4.179599 CCCTCTCTCCCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
1544 1575 5.886960 ATGCCAGAGAAACAACAATAGAC 57.113 39.130 0.00 0.00 0.00 2.59
1558 1589 4.784177 ACAATAGACATCCACATGCATGA 58.216 39.130 32.75 11.53 32.57 3.07
1578 1609 6.739008 GCATGAATGACCTACCTAAGTCCTAC 60.739 46.154 0.00 0.00 31.76 3.18
1584 1615 2.580962 CTACCTAAGTCCTACCCGGTC 58.419 57.143 0.00 0.00 0.00 4.79
1599 1630 2.094234 CCCGGTCAAGCTAAATTTTGGG 60.094 50.000 0.00 0.00 0.00 4.12
1603 1634 4.183865 GGTCAAGCTAAATTTTGGGCATC 58.816 43.478 0.00 0.00 0.00 3.91
1609 1640 4.527816 AGCTAAATTTTGGGCATCAGTGAA 59.472 37.500 0.00 0.00 0.00 3.18
1695 1726 8.225603 TGCTTACTATCAAAATCCATTTCTCC 57.774 34.615 0.00 0.00 0.00 3.71
1813 1844 1.108727 TCGTACGGTGGTGGAGTTGT 61.109 55.000 16.52 0.00 0.00 3.32
1819 1862 3.897122 TGGTGGAGTTGTGGGGGC 61.897 66.667 0.00 0.00 0.00 5.80
1848 1891 2.309136 CCCACCAGGTTTCAAATCCT 57.691 50.000 0.00 0.00 33.96 3.24
1849 1892 3.449746 CCCACCAGGTTTCAAATCCTA 57.550 47.619 0.00 0.00 32.26 2.94
1852 1895 5.515106 CCCACCAGGTTTCAAATCCTAATA 58.485 41.667 0.00 0.00 32.26 0.98
1859 1902 9.277783 CCAGGTTTCAAATCCTAATACTCATAG 57.722 37.037 0.00 0.00 32.26 2.23
2023 2066 2.789779 CGAAAACACCGACAACCAACTG 60.790 50.000 0.00 0.00 0.00 3.16
2112 2155 6.270927 ACCATGCACCTCTATATGTGATAGTT 59.729 38.462 0.00 0.00 34.37 2.24
2114 2157 8.481314 CCATGCACCTCTATATGTGATAGTTAT 58.519 37.037 0.00 0.00 34.37 1.89
2209 2252 2.225727 GACCGACCATGAGTTCCAAAAC 59.774 50.000 0.00 0.00 35.50 2.43
2239 2283 1.830408 CCGCCACCAAAAGTTCCCA 60.830 57.895 0.00 0.00 0.00 4.37
2261 2305 0.804989 GCACTGACCTTACACCATGC 59.195 55.000 0.00 0.00 0.00 4.06
2264 2308 1.635487 ACTGACCTTACACCATGCCAT 59.365 47.619 0.00 0.00 0.00 4.40
2277 2321 0.179094 ATGCCATGCAAGCCAAATCG 60.179 50.000 9.38 0.00 43.62 3.34
2291 2335 3.385755 GCCAAATCGGGAGTAACCTACTA 59.614 47.826 0.00 0.00 35.36 1.82
2302 2346 6.380560 GGGAGTAACCTACTAGACAAGATGTT 59.619 42.308 0.00 0.00 39.59 2.71
2310 2354 8.312564 ACCTACTAGACAAGATGTTAGGAAAAC 58.687 37.037 11.17 0.00 33.15 2.43
2312 2356 6.473758 ACTAGACAAGATGTTAGGAAAACCC 58.526 40.000 0.00 0.00 0.00 4.11
2414 2462 5.147162 GCTAATCTTGTTTGCACTGTACAC 58.853 41.667 0.00 0.00 0.00 2.90
2422 2470 7.700234 TCTTGTTTGCACTGTACACTATTTTTG 59.300 33.333 0.00 0.00 0.00 2.44
2499 2548 3.715648 AGACCAGGAGGATTCTATGGT 57.284 47.619 9.69 9.69 42.33 3.55
2638 2687 7.190871 CGGGTTTCATGTATAAACATAACACC 58.809 38.462 9.83 5.56 44.70 4.16
2643 2692 7.722795 TCATGTATAAACATAACACCCATCG 57.277 36.000 0.00 0.00 44.70 3.84
2644 2693 5.994887 TGTATAAACATAACACCCATCGC 57.005 39.130 0.00 0.00 0.00 4.58
2661 2710 1.139095 GCCGTAACTCGACCAGGAG 59.861 63.158 0.00 0.00 42.86 3.69
2662 2711 1.807886 CCGTAACTCGACCAGGAGG 59.192 63.158 0.00 0.00 42.86 4.30
2676 2725 2.369394 CAGGAGGACCCAATAAACTGC 58.631 52.381 0.00 0.00 37.41 4.40
2772 2821 5.934935 ATTGGACGGTAAGTGTAAACTTG 57.065 39.130 8.66 0.00 0.00 3.16
2789 2838 9.488124 TGTAAACTTGAACGTTTAATAACACAC 57.512 29.630 5.92 1.80 40.04 3.82
2877 2926 4.020573 TCCAGAAGGACTTTAAATCAGCGA 60.021 41.667 0.00 0.00 39.61 4.93
2922 2971 2.224018 GGATTTGTTGCTGCAAGTGGAA 60.224 45.455 16.53 8.49 35.30 3.53
2955 3004 0.387929 CGGGCAAGCGATTACTCCTA 59.612 55.000 0.00 0.00 0.00 2.94
2969 3018 7.658261 CGATTACTCCTACATCAAGTTATGGA 58.342 38.462 0.00 0.00 0.00 3.41
2985 3034 6.432581 AGTTATGGAGAGTATGACCACTACA 58.567 40.000 0.00 0.00 36.49 2.74
3141 3260 7.543172 CACATAAATGCCTCCACAATAATATGC 59.457 37.037 0.00 0.00 0.00 3.14
3168 3287 5.941948 GTGCTTTACCACTACAAGAACAT 57.058 39.130 0.00 0.00 33.02 2.71
3169 3288 5.689819 GTGCTTTACCACTACAAGAACATG 58.310 41.667 0.00 0.00 33.02 3.21
3170 3289 5.468746 GTGCTTTACCACTACAAGAACATGA 59.531 40.000 0.00 0.00 33.02 3.07
3218 3338 4.770795 TCAGGCTTAGATTCTTGCTAACC 58.229 43.478 9.97 0.00 0.00 2.85
3246 3366 6.996509 ACATGTTTCTACTTTCCATTTGCAT 58.003 32.000 0.00 0.00 0.00 3.96
3272 3392 1.051812 GGACATCACCCCTCATCGAT 58.948 55.000 0.00 0.00 0.00 3.59
3277 3397 3.454447 ACATCACCCCTCATCGATTACAA 59.546 43.478 0.00 0.00 0.00 2.41
3307 3427 2.193127 TCCGAAGATTGGGTGGTGTAT 58.807 47.619 0.00 0.00 0.00 2.29
3313 3433 2.771943 AGATTGGGTGGTGTATCGTCAT 59.228 45.455 0.00 0.00 0.00 3.06
3328 3448 1.271934 CGTCATGATTTGCAAACCCCA 59.728 47.619 15.41 13.02 0.00 4.96
3353 3473 4.320935 CGTTCTTGGGTTATTTTCCAGTGG 60.321 45.833 1.40 1.40 34.17 4.00
3356 3476 5.650283 TCTTGGGTTATTTTCCAGTGGAAT 58.350 37.500 25.12 13.92 41.71 3.01
3442 3562 0.107165 GTCCTCCAATGGGTAGTGGC 60.107 60.000 0.00 0.00 41.73 5.01
3463 3583 3.604582 CCACTTTCCTGATGAGAAGGAC 58.395 50.000 0.00 0.00 43.62 3.85
3505 3625 6.757010 CGTACTTCAGGCATGTTAAGAACTAT 59.243 38.462 6.79 0.00 0.00 2.12
3510 3630 6.711277 TCAGGCATGTTAAGAACTATGACTT 58.289 36.000 0.00 0.00 36.67 3.01
3520 3640 5.470047 AGAACTATGACTTCAAAGGTCGT 57.530 39.130 0.00 0.00 36.58 4.34
3526 3646 3.013921 TGACTTCAAAGGTCGTGCTTTT 58.986 40.909 0.00 0.00 36.58 2.27
3549 3669 9.646427 TTTTGAACCAATTACAGTTAATATGGC 57.354 29.630 0.00 0.00 33.49 4.40
3567 3687 1.074889 GGCCCCCTTTAGTTGACAAGA 59.925 52.381 0.00 0.00 0.00 3.02
3658 3778 4.429108 CCAAGTGGTTGTGTTGGTTAAAG 58.571 43.478 0.00 0.00 36.70 1.85
3736 3859 6.041409 TCCCTCACTTGTTTATTTTTGCATGA 59.959 34.615 0.00 0.00 0.00 3.07
3737 3860 6.146021 CCCTCACTTGTTTATTTTTGCATGAC 59.854 38.462 0.00 0.00 0.00 3.06
3738 3861 6.700960 CCTCACTTGTTTATTTTTGCATGACA 59.299 34.615 0.00 0.00 0.00 3.58
3739 3862 7.224362 CCTCACTTGTTTATTTTTGCATGACAA 59.776 33.333 0.00 0.00 36.13 3.18
3740 3863 8.129161 TCACTTGTTTATTTTTGCATGACAAG 57.871 30.769 13.54 13.54 44.73 3.16
3743 3866 6.841443 TGTTTATTTTTGCATGACAAGTGG 57.159 33.333 0.00 0.00 40.06 4.00
3744 3867 5.757320 TGTTTATTTTTGCATGACAAGTGGG 59.243 36.000 0.00 0.00 40.06 4.61
3745 3868 2.906691 TTTTTGCATGACAAGTGGGG 57.093 45.000 0.00 0.00 40.06 4.96
3746 3869 1.786937 TTTTGCATGACAAGTGGGGT 58.213 45.000 0.00 0.00 40.06 4.95
3747 3870 1.327303 TTTGCATGACAAGTGGGGTC 58.673 50.000 0.00 0.00 40.06 4.46
3754 3877 3.695830 TGACAAGTGGGGTCAACTATC 57.304 47.619 0.00 0.00 41.96 2.08
3755 3878 2.304761 TGACAAGTGGGGTCAACTATCC 59.695 50.000 0.00 0.00 41.96 2.59
3756 3879 1.633945 ACAAGTGGGGTCAACTATCCC 59.366 52.381 0.00 0.00 42.73 3.85
3761 3884 2.283834 TGGGGTCAACTATCCCAATGT 58.716 47.619 0.00 0.00 46.73 2.71
3762 3885 2.652348 TGGGGTCAACTATCCCAATGTT 59.348 45.455 0.00 0.00 46.73 2.71
3763 3886 3.288092 GGGGTCAACTATCCCAATGTTC 58.712 50.000 2.64 0.00 45.06 3.18
3764 3887 3.053619 GGGGTCAACTATCCCAATGTTCT 60.054 47.826 2.64 0.00 45.06 3.01
3765 3888 4.569865 GGGGTCAACTATCCCAATGTTCTT 60.570 45.833 2.64 0.00 45.06 2.52
3766 3889 5.339695 GGGGTCAACTATCCCAATGTTCTTA 60.340 44.000 2.64 0.00 45.06 2.10
3767 3890 6.184789 GGGTCAACTATCCCAATGTTCTTAA 58.815 40.000 0.00 0.00 42.95 1.85
3768 3891 6.833933 GGGTCAACTATCCCAATGTTCTTAAT 59.166 38.462 0.00 0.00 42.95 1.40
3769 3892 7.201821 GGGTCAACTATCCCAATGTTCTTAATG 60.202 40.741 0.00 0.00 42.95 1.90
3770 3893 7.201821 GGTCAACTATCCCAATGTTCTTAATGG 60.202 40.741 0.00 0.00 0.00 3.16
3778 3901 4.261322 CCAATGTTCTTAATGGCCATCTCG 60.261 45.833 21.08 10.17 0.00 4.04
3785 3908 2.799126 AATGGCCATCTCGTTTGGTA 57.201 45.000 21.08 0.00 36.57 3.25
3795 3918 2.960384 TCTCGTTTGGTACTGAGGTCAA 59.040 45.455 0.00 0.00 32.15 3.18
3842 3972 4.464597 TGGATAATTGGGTTTTGGCTACAC 59.535 41.667 0.00 0.00 0.00 2.90
3998 4128 5.873164 AGAGTACAACTAAAATTAGCCACCG 59.127 40.000 0.00 0.00 34.09 4.94
4027 4157 6.901081 AAGGCTAAATATCTTGGTAATGCC 57.099 37.500 0.00 0.00 37.15 4.40
4062 4192 4.377839 TCGTCAAGAGGAAGCTTATCAG 57.622 45.455 0.00 0.00 0.00 2.90
4092 4222 4.817318 AAGCAAAACACCTTTTGAGGAA 57.183 36.364 9.57 0.00 46.43 3.36
4205 4335 0.698818 AAGACCCCCATCCACTTGTC 59.301 55.000 0.00 0.00 0.00 3.18
4218 4348 5.576447 TCCACTTGTCTTGTTTCCTTTTC 57.424 39.130 0.00 0.00 0.00 2.29
4238 4368 7.649306 CCTTTTCTTTTCCATAAATATGAGGCG 59.351 37.037 1.98 0.00 35.75 5.52
4273 4403 5.908831 TCCCACAAGGATGTATAGTACCATT 59.091 40.000 0.00 0.00 40.93 3.16
4327 4457 1.006832 CGATGACCAAAAGCGTAGGG 58.993 55.000 0.00 0.00 0.00 3.53
4334 4464 2.028385 ACCAAAAGCGTAGGGTCTGTAG 60.028 50.000 0.00 0.00 0.00 2.74
4342 4472 3.194329 GCGTAGGGTCTGTAGTACCTTTT 59.806 47.826 0.00 0.00 37.18 2.27
4345 4475 3.248888 AGGGTCTGTAGTACCTTTTGCT 58.751 45.455 0.00 0.00 37.18 3.91
4392 4522 9.952030 TTTTATCCAAAGATTAAACATTTCCCC 57.048 29.630 0.00 0.00 33.67 4.81
4393 4523 8.909423 TTATCCAAAGATTAAACATTTCCCCT 57.091 30.769 0.00 0.00 33.67 4.79
4394 4524 7.813087 ATCCAAAGATTAAACATTTCCCCTT 57.187 32.000 0.00 0.00 0.00 3.95
4395 4525 7.625498 TCCAAAGATTAAACATTTCCCCTTT 57.375 32.000 0.00 0.00 0.00 3.11
4396 4526 7.676004 TCCAAAGATTAAACATTTCCCCTTTC 58.324 34.615 0.00 0.00 0.00 2.62
4397 4527 6.878923 CCAAAGATTAAACATTTCCCCTTTCC 59.121 38.462 0.00 0.00 0.00 3.13
4398 4528 7.449247 CAAAGATTAAACATTTCCCCTTTCCA 58.551 34.615 0.00 0.00 0.00 3.53
4399 4529 6.605471 AGATTAAACATTTCCCCTTTCCAC 57.395 37.500 0.00 0.00 0.00 4.02
4400 4530 6.081356 AGATTAAACATTTCCCCTTTCCACA 58.919 36.000 0.00 0.00 0.00 4.17
4401 4531 6.556874 AGATTAAACATTTCCCCTTTCCACAA 59.443 34.615 0.00 0.00 0.00 3.33
4402 4532 4.415881 AAACATTTCCCCTTTCCACAAC 57.584 40.909 0.00 0.00 0.00 3.32
4403 4533 3.328535 ACATTTCCCCTTTCCACAACT 57.671 42.857 0.00 0.00 0.00 3.16
4404 4534 4.463050 ACATTTCCCCTTTCCACAACTA 57.537 40.909 0.00 0.00 0.00 2.24
4405 4535 4.407365 ACATTTCCCCTTTCCACAACTAG 58.593 43.478 0.00 0.00 0.00 2.57
4406 4536 2.579410 TTCCCCTTTCCACAACTAGC 57.421 50.000 0.00 0.00 0.00 3.42
4407 4537 0.696501 TCCCCTTTCCACAACTAGCC 59.303 55.000 0.00 0.00 0.00 3.93
4408 4538 0.698818 CCCCTTTCCACAACTAGCCT 59.301 55.000 0.00 0.00 0.00 4.58
4409 4539 1.614317 CCCCTTTCCACAACTAGCCTG 60.614 57.143 0.00 0.00 0.00 4.85
4410 4540 1.351017 CCCTTTCCACAACTAGCCTGA 59.649 52.381 0.00 0.00 0.00 3.86
4411 4541 2.616510 CCCTTTCCACAACTAGCCTGAG 60.617 54.545 0.00 0.00 0.00 3.35
4412 4542 2.303022 CCTTTCCACAACTAGCCTGAGA 59.697 50.000 0.00 0.00 0.00 3.27
4413 4543 3.330267 CTTTCCACAACTAGCCTGAGAC 58.670 50.000 0.00 0.00 0.00 3.36
4414 4544 1.267121 TCCACAACTAGCCTGAGACC 58.733 55.000 0.00 0.00 0.00 3.85
4415 4545 0.250513 CCACAACTAGCCTGAGACCC 59.749 60.000 0.00 0.00 0.00 4.46
4416 4546 0.976641 CACAACTAGCCTGAGACCCA 59.023 55.000 0.00 0.00 0.00 4.51
4417 4547 1.347707 CACAACTAGCCTGAGACCCAA 59.652 52.381 0.00 0.00 0.00 4.12
4418 4548 1.625818 ACAACTAGCCTGAGACCCAAG 59.374 52.381 0.00 0.00 0.00 3.61
4419 4549 0.615850 AACTAGCCTGAGACCCAAGC 59.384 55.000 0.00 0.00 32.41 4.01
4420 4550 0.252467 ACTAGCCTGAGACCCAAGCT 60.252 55.000 0.00 0.00 44.30 3.74
4421 4551 1.007238 ACTAGCCTGAGACCCAAGCTA 59.993 52.381 0.00 0.00 40.59 3.32
4422 4552 2.324541 CTAGCCTGAGACCCAAGCTAT 58.675 52.381 0.00 0.00 42.21 2.97
4423 4553 1.589414 AGCCTGAGACCCAAGCTATT 58.411 50.000 0.00 0.00 40.59 1.73
4450 4764 0.696501 TCCCCTTTCCACAACTAGCC 59.303 55.000 0.00 0.00 0.00 3.93
4454 4768 2.616510 CCCTTTCCACAACTAGCCTGAG 60.617 54.545 0.00 0.00 0.00 3.35
4529 4851 6.183360 CGTCTTCTATGAAACTAGATGACCCA 60.183 42.308 15.66 0.00 43.34 4.51
4550 4872 0.966875 TGCATCCTTGGCGCAAAGAT 60.967 50.000 26.35 13.93 31.46 2.40
4551 4873 0.248784 GCATCCTTGGCGCAAAGATC 60.249 55.000 26.35 7.70 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.440255 GGCGTCCTAACTTTATTTTAGCAGATA 59.560 37.037 0.00 0.00 0.00 1.98
27 28 5.247084 TGGCGTCCTAACTTTATTTTAGCA 58.753 37.500 0.00 0.00 0.00 3.49
31 32 7.039993 ACAGAATTGGCGTCCTAACTTTATTTT 60.040 33.333 0.00 0.00 0.00 1.82
33 34 5.944007 ACAGAATTGGCGTCCTAACTTTATT 59.056 36.000 0.00 0.00 0.00 1.40
44 45 1.918609 GTCTCGTACAGAATTGGCGTC 59.081 52.381 0.00 0.00 30.72 5.19
108 109 2.766313 TCATGGCGTAAGTGGATATGC 58.234 47.619 0.00 0.00 41.68 3.14
158 159 4.410400 GAGGGCAAGGTGGGTCGG 62.410 72.222 0.00 0.00 0.00 4.79
159 160 4.760047 CGAGGGCAAGGTGGGTCG 62.760 72.222 0.00 0.00 0.00 4.79
160 161 3.316573 CTCGAGGGCAAGGTGGGTC 62.317 68.421 3.91 0.00 0.00 4.46
161 162 3.322466 CTCGAGGGCAAGGTGGGT 61.322 66.667 3.91 0.00 0.00 4.51
162 163 4.785453 GCTCGAGGGCAAGGTGGG 62.785 72.222 15.58 0.00 0.00 4.61
163 164 4.785453 GGCTCGAGGGCAAGGTGG 62.785 72.222 15.58 0.00 40.53 4.61
256 260 2.498941 CGCCGGATCTGGAGCCTAA 61.499 63.158 25.54 0.00 33.99 2.69
258 262 4.841617 TCGCCGGATCTGGAGCCT 62.842 66.667 25.54 0.00 33.99 4.58
325 329 1.402896 CCTCCGCATCTTCCAGGCTA 61.403 60.000 0.00 0.00 0.00 3.93
330 334 1.045350 CCTCTCCTCCGCATCTTCCA 61.045 60.000 0.00 0.00 0.00 3.53
331 335 0.757188 TCCTCTCCTCCGCATCTTCC 60.757 60.000 0.00 0.00 0.00 3.46
384 402 3.730761 CTGCAGCCCAAGTCGCAC 61.731 66.667 0.00 0.00 0.00 5.34
388 406 3.605749 TACGCCTGCAGCCCAAGTC 62.606 63.158 8.66 0.00 38.78 3.01
389 407 3.636231 TACGCCTGCAGCCCAAGT 61.636 61.111 8.66 5.66 38.78 3.16
390 408 3.127533 GTACGCCTGCAGCCCAAG 61.128 66.667 8.66 0.00 38.78 3.61
391 409 3.899981 CTGTACGCCTGCAGCCCAA 62.900 63.158 8.66 0.00 38.78 4.12
392 410 4.393155 CTGTACGCCTGCAGCCCA 62.393 66.667 8.66 0.00 38.78 5.36
393 411 4.082523 TCTGTACGCCTGCAGCCC 62.083 66.667 8.66 0.00 38.78 5.19
394 412 2.510238 CTCTGTACGCCTGCAGCC 60.510 66.667 8.66 0.00 38.78 4.85
395 413 2.510238 CCTCTGTACGCCTGCAGC 60.510 66.667 8.66 2.87 38.52 5.25
396 414 2.510238 GCCTCTGTACGCCTGCAG 60.510 66.667 6.78 6.78 0.00 4.41
397 415 4.082523 GGCCTCTGTACGCCTGCA 62.083 66.667 0.00 0.00 42.21 4.41
401 419 0.036294 AAAGAAGGCCTCTGTACGCC 60.036 55.000 5.23 1.55 46.09 5.68
447 465 3.794690 CCGGTCGTGGCTGATATAG 57.205 57.895 0.00 0.00 0.00 1.31
464 482 3.507622 AGTTGTGCTTCTTTCTATTGGCC 59.492 43.478 0.00 0.00 0.00 5.36
538 556 2.417651 CCCATTAACAGTCGCGGTAAGA 60.418 50.000 6.13 0.00 0.00 2.10
542 560 0.035739 AACCCATTAACAGTCGCGGT 59.964 50.000 6.13 0.00 0.00 5.68
543 561 1.161843 AAACCCATTAACAGTCGCGG 58.838 50.000 6.13 0.00 0.00 6.46
571 589 3.134458 CGGGTGATCTATCTTCTTTGGC 58.866 50.000 0.00 0.00 0.00 4.52
573 591 5.605534 ACATCGGGTGATCTATCTTCTTTG 58.394 41.667 0.00 0.00 30.49 2.77
592 610 8.461222 TCCACTCAACATTTAATGAATGACATC 58.539 33.333 12.28 0.00 46.59 3.06
595 613 8.680903 AGATCCACTCAACATTTAATGAATGAC 58.319 33.333 12.28 3.57 46.59 3.06
598 616 7.123098 TGCAGATCCACTCAACATTTAATGAAT 59.877 33.333 12.28 0.00 0.00 2.57
631 649 5.048713 GCATTATATTTTGGAACGGAGGGAG 60.049 44.000 0.00 0.00 0.00 4.30
634 652 4.783242 CGCATTATATTTTGGAACGGAGG 58.217 43.478 0.00 0.00 0.00 4.30
635 653 4.219033 GCGCATTATATTTTGGAACGGAG 58.781 43.478 0.30 0.00 0.00 4.63
636 654 3.003897 GGCGCATTATATTTTGGAACGGA 59.996 43.478 10.83 0.00 0.00 4.69
637 655 3.004315 AGGCGCATTATATTTTGGAACGG 59.996 43.478 10.83 0.00 0.00 4.44
638 656 3.974401 CAGGCGCATTATATTTTGGAACG 59.026 43.478 10.83 0.00 0.00 3.95
639 657 3.735746 GCAGGCGCATTATATTTTGGAAC 59.264 43.478 10.83 0.00 38.36 3.62
640 658 3.382865 TGCAGGCGCATTATATTTTGGAA 59.617 39.130 10.83 0.00 45.36 3.53
641 659 2.954989 TGCAGGCGCATTATATTTTGGA 59.045 40.909 10.83 0.00 45.36 3.53
642 660 3.367992 TGCAGGCGCATTATATTTTGG 57.632 42.857 10.83 0.00 45.36 3.28
656 674 3.959991 GACCTCGGGAAGTGCAGGC 62.960 68.421 0.00 0.00 0.00 4.85
657 675 2.266055 GACCTCGGGAAGTGCAGG 59.734 66.667 0.00 0.00 0.00 4.85
658 676 2.111999 TTGGACCTCGGGAAGTGCAG 62.112 60.000 0.00 0.00 35.66 4.41
659 677 2.144078 TTGGACCTCGGGAAGTGCA 61.144 57.895 0.00 0.00 32.02 4.57
660 678 1.671379 GTTGGACCTCGGGAAGTGC 60.671 63.158 0.00 0.00 0.00 4.40
661 679 0.396811 AAGTTGGACCTCGGGAAGTG 59.603 55.000 0.00 0.00 0.00 3.16
662 680 1.137697 AAAGTTGGACCTCGGGAAGT 58.862 50.000 0.00 0.00 0.00 3.01
663 681 3.412237 TTAAAGTTGGACCTCGGGAAG 57.588 47.619 0.00 0.00 0.00 3.46
664 682 3.328343 TGATTAAAGTTGGACCTCGGGAA 59.672 43.478 0.00 0.00 0.00 3.97
665 683 2.907696 TGATTAAAGTTGGACCTCGGGA 59.092 45.455 0.00 0.00 0.00 5.14
666 684 3.343941 TGATTAAAGTTGGACCTCGGG 57.656 47.619 0.00 0.00 0.00 5.14
667 685 6.995511 TTTATGATTAAAGTTGGACCTCGG 57.004 37.500 0.00 0.00 0.00 4.63
681 699 9.451002 TGGTCTCGTTGGTTAAATTTATGATTA 57.549 29.630 0.00 0.00 0.00 1.75
682 700 8.343168 TGGTCTCGTTGGTTAAATTTATGATT 57.657 30.769 0.00 0.00 0.00 2.57
683 701 7.931578 TGGTCTCGTTGGTTAAATTTATGAT 57.068 32.000 0.00 0.00 0.00 2.45
684 702 7.446013 AGTTGGTCTCGTTGGTTAAATTTATGA 59.554 33.333 0.00 0.00 0.00 2.15
685 703 7.537306 CAGTTGGTCTCGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
686 704 7.590279 CAGTTGGTCTCGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
687 705 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
688 706 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
689 707 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
690 708 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
691 709 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
692 710 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
693 711 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
694 712 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
695 713 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
696 714 2.317609 CCGCAGTTGGTCTCGTTGG 61.318 63.158 0.00 0.00 0.00 3.77
697 715 2.954753 GCCGCAGTTGGTCTCGTTG 61.955 63.158 0.00 0.00 0.00 4.10
698 716 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
699 717 4.681978 GGCCGCAGTTGGTCTCGT 62.682 66.667 0.00 0.00 0.00 4.18
705 723 4.697756 TTCTCCGGCCGCAGTTGG 62.698 66.667 22.85 4.77 0.00 3.77
706 724 1.791103 TTTTTCTCCGGCCGCAGTTG 61.791 55.000 22.85 5.67 0.00 3.16
707 725 1.527380 TTTTTCTCCGGCCGCAGTT 60.527 52.632 22.85 0.00 0.00 3.16
708 726 2.112297 TTTTTCTCCGGCCGCAGT 59.888 55.556 22.85 0.00 0.00 4.40
755 773 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
756 774 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
757 775 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
758 776 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
759 777 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
760 778 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
761 779 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
786 804 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
787 805 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
788 806 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
789 807 7.818930 TCGTAAATTTAACTACCAAGACCGATT 59.181 33.333 0.00 0.00 0.00 3.34
790 808 7.322664 TCGTAAATTTAACTACCAAGACCGAT 58.677 34.615 0.00 0.00 0.00 4.18
791 809 6.686630 TCGTAAATTTAACTACCAAGACCGA 58.313 36.000 0.00 0.00 0.00 4.69
792 810 6.949578 TCGTAAATTTAACTACCAAGACCG 57.050 37.500 0.00 0.00 0.00 4.79
793 811 8.483307 TGATCGTAAATTTAACTACCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
802 820 9.394477 GCTTCAACTTTGATCGTAAATTTAACT 57.606 29.630 0.00 0.00 37.00 2.24
803 821 9.176181 TGCTTCAACTTTGATCGTAAATTTAAC 57.824 29.630 0.00 0.00 37.00 2.01
804 822 9.176181 GTGCTTCAACTTTGATCGTAAATTTAA 57.824 29.630 0.00 0.00 37.00 1.52
805 823 7.532546 CGTGCTTCAACTTTGATCGTAAATTTA 59.467 33.333 0.00 0.00 37.00 1.40
806 824 6.359617 CGTGCTTCAACTTTGATCGTAAATTT 59.640 34.615 0.00 0.00 37.00 1.82
807 825 5.851177 CGTGCTTCAACTTTGATCGTAAATT 59.149 36.000 0.00 0.00 37.00 1.82
808 826 5.049680 ACGTGCTTCAACTTTGATCGTAAAT 60.050 36.000 0.00 0.00 37.00 1.40
809 827 4.271533 ACGTGCTTCAACTTTGATCGTAAA 59.728 37.500 0.00 0.00 37.00 2.01
810 828 3.805422 ACGTGCTTCAACTTTGATCGTAA 59.195 39.130 0.00 0.00 37.00 3.18
811 829 3.183574 CACGTGCTTCAACTTTGATCGTA 59.816 43.478 0.82 0.00 37.00 3.43
812 830 2.032894 CACGTGCTTCAACTTTGATCGT 60.033 45.455 0.82 0.56 37.00 3.73
813 831 2.563976 CACGTGCTTCAACTTTGATCG 58.436 47.619 0.82 0.01 37.00 3.69
814 832 2.548057 TCCACGTGCTTCAACTTTGATC 59.452 45.455 10.91 0.00 37.00 2.92
815 833 2.571212 TCCACGTGCTTCAACTTTGAT 58.429 42.857 10.91 0.00 37.00 2.57
816 834 2.031258 TCCACGTGCTTCAACTTTGA 57.969 45.000 10.91 0.00 34.92 2.69
817 835 3.745975 TCTATCCACGTGCTTCAACTTTG 59.254 43.478 10.91 0.00 0.00 2.77
818 836 3.997021 CTCTATCCACGTGCTTCAACTTT 59.003 43.478 10.91 0.00 0.00 2.66
819 837 3.589988 CTCTATCCACGTGCTTCAACTT 58.410 45.455 10.91 0.00 0.00 2.66
820 838 2.093973 CCTCTATCCACGTGCTTCAACT 60.094 50.000 10.91 0.00 0.00 3.16
821 839 2.094182 TCCTCTATCCACGTGCTTCAAC 60.094 50.000 10.91 0.00 0.00 3.18
822 840 2.176045 TCCTCTATCCACGTGCTTCAA 58.824 47.619 10.91 0.00 0.00 2.69
823 841 1.847328 TCCTCTATCCACGTGCTTCA 58.153 50.000 10.91 0.00 0.00 3.02
824 842 2.815478 CTTCCTCTATCCACGTGCTTC 58.185 52.381 10.91 0.00 0.00 3.86
825 843 1.134670 GCTTCCTCTATCCACGTGCTT 60.135 52.381 10.91 1.47 0.00 3.91
826 844 0.461961 GCTTCCTCTATCCACGTGCT 59.538 55.000 10.91 1.67 0.00 4.40
827 845 0.175760 TGCTTCCTCTATCCACGTGC 59.824 55.000 10.91 0.00 0.00 5.34
828 846 1.478510 AGTGCTTCCTCTATCCACGTG 59.521 52.381 9.08 9.08 0.00 4.49
829 847 1.853963 AGTGCTTCCTCTATCCACGT 58.146 50.000 0.00 0.00 0.00 4.49
830 848 2.688446 TGTAGTGCTTCCTCTATCCACG 59.312 50.000 0.00 0.00 0.00 4.94
831 849 4.946478 ATGTAGTGCTTCCTCTATCCAC 57.054 45.455 0.00 0.00 0.00 4.02
832 850 4.716784 ACAATGTAGTGCTTCCTCTATCCA 59.283 41.667 0.00 0.00 0.00 3.41
833 851 5.053145 CACAATGTAGTGCTTCCTCTATCC 58.947 45.833 0.00 0.00 32.04 2.59
834 852 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
835 853 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
836 854 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
837 855 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
838 856 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
839 857 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
840 858 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
841 859 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
842 860 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
843 861 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
844 862 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
845 863 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
846 864 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
847 865 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
848 866 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
849 867 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
850 868 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
851 869 3.464828 ACTACTCCCTCCATTCCACAAT 58.535 45.455 0.00 0.00 0.00 2.71
852 870 2.915869 ACTACTCCCTCCATTCCACAA 58.084 47.619 0.00 0.00 0.00 3.33
853 871 2.642171 ACTACTCCCTCCATTCCACA 57.358 50.000 0.00 0.00 0.00 4.17
854 872 6.497259 TCATTATACTACTCCCTCCATTCCAC 59.503 42.308 0.00 0.00 0.00 4.02
855 873 6.630131 TCATTATACTACTCCCTCCATTCCA 58.370 40.000 0.00 0.00 0.00 3.53
856 874 7.741554 ATCATTATACTACTCCCTCCATTCC 57.258 40.000 0.00 0.00 0.00 3.01
920 947 4.572389 AGATGGATGTTATGTGAAGAACGC 59.428 41.667 0.00 0.00 0.00 4.84
947 974 1.351017 TCGGAATGGAGTGCTTCCTTT 59.649 47.619 8.90 8.50 46.92 3.11
1018 1045 9.235537 CGAAATGCACAACAATATTGATATGAA 57.764 29.630 22.16 4.70 0.00 2.57
1029 1056 4.290155 GAGTGAACGAAATGCACAACAAT 58.710 39.130 0.00 0.00 35.08 2.71
1032 1059 2.290641 AGGAGTGAACGAAATGCACAAC 59.709 45.455 0.00 0.00 35.08 3.32
1039 1066 6.812160 GTGATGTAGTAAGGAGTGAACGAAAT 59.188 38.462 0.00 0.00 0.00 2.17
1050 1077 4.768448 TCGACCAAAGTGATGTAGTAAGGA 59.232 41.667 0.00 0.00 0.00 3.36
1058 1085 4.133820 TGTTGATTCGACCAAAGTGATGT 58.866 39.130 1.54 0.00 0.00 3.06
1070 1097 3.678806 GCCACCTACATCTGTTGATTCGA 60.679 47.826 0.00 0.00 0.00 3.71
1071 1098 2.609459 GCCACCTACATCTGTTGATTCG 59.391 50.000 0.00 0.00 0.00 3.34
1122 1149 4.697828 TGCATCGAAGGCTAAAAATACACA 59.302 37.500 12.79 0.00 0.00 3.72
1146 1173 7.971183 AAATAAGGAACAGAACAAGACTCTC 57.029 36.000 0.00 0.00 0.00 3.20
1207 1234 7.838498 ACGAACTCGCTACAAATAATATTGAC 58.162 34.615 0.00 0.00 44.43 3.18
1230 1257 9.077674 GGCACATGATTAATAGAGAATAGTACG 57.922 37.037 0.00 0.00 0.00 3.67
1352 1379 7.639945 CCTAAAAAGAGTGGTGTTCTGTAAAG 58.360 38.462 0.00 0.00 0.00 1.85
1460 1489 2.612251 GGGAGGGGAGAGAGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
1510 1541 6.714810 TGTTTCTCTGGCATTTAAGTACATGT 59.285 34.615 2.69 2.69 0.00 3.21
1544 1575 2.956333 AGGTCATTCATGCATGTGGATG 59.044 45.455 25.43 23.74 43.99 3.51
1558 1589 4.554683 GGGTAGGACTTAGGTAGGTCATT 58.445 47.826 2.14 0.00 34.36 2.57
1578 1609 2.094234 CCCAAAATTTAGCTTGACCGGG 60.094 50.000 6.32 0.00 0.00 5.73
1584 1615 4.628333 CACTGATGCCCAAAATTTAGCTTG 59.372 41.667 0.00 0.00 0.00 4.01
1599 1630 2.289945 ACCTTGTCTCCTTCACTGATGC 60.290 50.000 0.00 0.00 0.00 3.91
1603 1634 1.202687 TGCACCTTGTCTCCTTCACTG 60.203 52.381 0.00 0.00 0.00 3.66
1609 1640 4.574674 TGAAATATGCACCTTGTCTCCT 57.425 40.909 0.00 0.00 0.00 3.69
1819 1862 2.343758 CTGGTGGGTGGAGTCGTG 59.656 66.667 0.00 0.00 0.00 4.35
1852 1895 9.036980 GGAGACCCATACAATATAACTATGAGT 57.963 37.037 0.00 0.00 0.00 3.41
1995 2038 0.385473 GTCGGTGTTTTCGTGGCATG 60.385 55.000 0.00 0.00 0.00 4.06
2023 2066 3.082548 GTCCTAGGTTCCTTTTCAAGCC 58.917 50.000 9.08 0.00 0.00 4.35
2134 2177 7.122948 GGATGTAAGTGTCTTCTCTCCTCTTTA 59.877 40.741 0.00 0.00 0.00 1.85
2149 2192 4.278419 GGTGCTTTTCAAGGATGTAAGTGT 59.722 41.667 0.00 0.00 0.00 3.55
2209 2252 1.574428 GTGGCGGTGCACTACTTTG 59.426 57.895 17.98 1.35 0.00 2.77
2239 2283 2.949177 TGGTGTAAGGTCAGTGCAAT 57.051 45.000 0.00 0.00 0.00 3.56
2261 2305 1.142314 CCCGATTTGGCTTGCATGG 59.858 57.895 1.34 0.00 35.87 3.66
2264 2308 0.326595 TACTCCCGATTTGGCTTGCA 59.673 50.000 0.00 0.00 35.87 4.08
2277 2321 5.892686 ACATCTTGTCTAGTAGGTTACTCCC 59.107 44.000 0.00 0.00 40.14 4.30
2291 2335 5.316987 CTGGGTTTTCCTAACATCTTGTCT 58.683 41.667 0.00 0.00 40.46 3.41
2302 2346 3.534357 TTTGGATGCTGGGTTTTCCTA 57.466 42.857 0.00 0.00 40.46 2.94
2310 2354 0.458669 GTGCTCATTTGGATGCTGGG 59.541 55.000 0.00 0.00 33.14 4.45
2312 2356 1.063616 CTCGTGCTCATTTGGATGCTG 59.936 52.381 0.00 0.00 33.14 4.41
2499 2548 7.378966 CCCATATACTAATTTCAGCTCGAAGA 58.621 38.462 0.00 0.00 34.32 2.87
2638 2687 3.993103 GTCGAGTTACGGCGATGG 58.007 61.111 16.62 0.00 42.82 3.51
2643 2692 1.139095 CTCCTGGTCGAGTTACGGC 59.861 63.158 0.00 0.00 46.61 5.68
2644 2693 0.679002 TCCTCCTGGTCGAGTTACGG 60.679 60.000 0.00 0.00 42.82 4.02
2661 2710 6.524101 TTGAAATAGCAGTTTATTGGGTCC 57.476 37.500 0.00 0.00 0.00 4.46
2676 2725 8.483307 ACAAGCCAAAGCATAATTTGAAATAG 57.517 30.769 0.91 0.00 41.71 1.73
2808 2857 8.466617 AGTCTTGTCGATCTACAAATACCTAT 57.533 34.615 13.21 0.00 38.81 2.57
2821 2870 8.073355 TGAAGAAAACTTTAGTCTTGTCGATC 57.927 34.615 0.00 0.00 31.80 3.69
2877 2926 1.071471 ACCGCAAGTTGTAGCAGCT 59.929 52.632 0.00 0.00 0.00 4.24
2910 2959 1.008079 GTGCAGTTCCACTTGCAGC 60.008 57.895 0.00 0.00 34.61 5.25
2936 2985 0.387929 TAGGAGTAATCGCTTGCCCG 59.612 55.000 0.00 0.00 0.00 6.13
2946 2995 8.783660 TCTCCATAACTTGATGTAGGAGTAAT 57.216 34.615 0.00 0.00 40.35 1.89
2955 3004 6.384015 TGGTCATACTCTCCATAACTTGATGT 59.616 38.462 0.00 0.00 0.00 3.06
2969 3018 5.459505 AGCCTAATGTAGTGGTCATACTCT 58.540 41.667 0.00 0.00 32.19 3.24
2985 3034 7.715686 GTGCACCTTATTAAGACTAAGCCTAAT 59.284 37.037 5.22 0.00 0.00 1.73
3041 3090 8.577296 GGTATGTTCAGCTCTAATCATGTACTA 58.423 37.037 0.00 0.00 0.00 1.82
3054 3103 4.871513 TCATGTATCGGTATGTTCAGCTC 58.128 43.478 0.00 0.00 0.00 4.09
3056 3105 6.645003 TGTAATCATGTATCGGTATGTTCAGC 59.355 38.462 0.00 0.00 0.00 4.26
3098 3217 8.625651 CATTTATGTGAATTAACCCATAACCGA 58.374 33.333 0.00 0.00 31.46 4.69
3099 3218 7.381139 GCATTTATGTGAATTAACCCATAACCG 59.619 37.037 0.00 0.00 31.46 4.44
3155 3274 8.378172 TCCTTAACTTTCATGTTCTTGTAGTG 57.622 34.615 0.00 0.00 0.00 2.74
3202 3322 6.714810 ACATGTTGTGGTTAGCAAGAATCTAA 59.285 34.615 0.00 0.00 0.00 2.10
3203 3323 6.237901 ACATGTTGTGGTTAGCAAGAATCTA 58.762 36.000 0.00 0.00 0.00 1.98
3218 3338 7.306749 GCAAATGGAAAGTAGAAACATGTTGTG 60.307 37.037 12.82 0.00 0.00 3.33
3246 3366 2.378208 TGAGGGGTGATGTCCATTTTCA 59.622 45.455 0.00 0.00 0.00 2.69
3272 3392 5.429681 TCTTCGGATTTGGGATCTTGTAA 57.570 39.130 0.00 0.00 0.00 2.41
3277 3397 3.435601 CCCAATCTTCGGATTTGGGATCT 60.436 47.826 20.85 0.00 45.27 2.75
3307 3427 1.543802 GGGGTTTGCAAATCATGACGA 59.456 47.619 23.29 0.00 0.00 4.20
3313 3433 1.626686 ACGATGGGGTTTGCAAATCA 58.373 45.000 23.29 17.36 0.00 2.57
3328 3448 5.183140 CACTGGAAAATAACCCAAGAACGAT 59.817 40.000 0.00 0.00 31.11 3.73
3373 3493 4.465632 TCCAGTCAATGCTTGTATACGT 57.534 40.909 0.00 0.00 0.00 3.57
3420 3540 1.065418 CACTACCCATTGGAGGACCAC 60.065 57.143 3.62 0.00 46.80 4.16
3442 3562 3.604582 GTCCTTCTCATCAGGAAAGTGG 58.395 50.000 0.00 0.00 42.35 4.00
3463 3583 1.139989 ACGCAGTTGTCTTGTCATCG 58.860 50.000 0.00 0.00 37.78 3.84
3505 3625 2.325583 AAGCACGACCTTTGAAGTCA 57.674 45.000 0.00 0.00 33.70 3.41
3510 3630 2.098443 GGTTCAAAAGCACGACCTTTGA 59.902 45.455 5.98 4.86 35.36 2.69
3526 3646 6.322712 GGGCCATATTAACTGTAATTGGTTCA 59.677 38.462 4.39 0.00 34.13 3.18
3548 3668 2.160205 GTCTTGTCAACTAAAGGGGGC 58.840 52.381 0.00 0.00 0.00 5.80
3549 3669 2.423577 CGTCTTGTCAACTAAAGGGGG 58.576 52.381 0.00 0.00 0.00 5.40
3567 3687 2.803956 CAGTTTCCGTGTAACAATCCGT 59.196 45.455 0.00 0.00 35.74 4.69
3736 3859 1.633945 GGGATAGTTGACCCCACTTGT 59.366 52.381 0.00 0.00 40.19 3.16
3737 3860 1.633432 TGGGATAGTTGACCCCACTTG 59.367 52.381 0.00 0.00 44.67 3.16
3738 3861 2.053747 TGGGATAGTTGACCCCACTT 57.946 50.000 0.00 0.00 44.67 3.16
3739 3862 3.828418 TGGGATAGTTGACCCCACT 57.172 52.632 0.00 0.00 44.67 4.00
3742 3865 3.053619 AGAACATTGGGATAGTTGACCCC 60.054 47.826 0.00 0.00 45.01 4.95
3743 3866 4.236527 AGAACATTGGGATAGTTGACCC 57.763 45.455 0.00 0.00 45.74 4.46
3744 3867 7.201821 CCATTAAGAACATTGGGATAGTTGACC 60.202 40.741 0.00 0.00 0.00 4.02
3745 3868 7.682021 GCCATTAAGAACATTGGGATAGTTGAC 60.682 40.741 0.00 0.00 0.00 3.18
3746 3869 6.321181 GCCATTAAGAACATTGGGATAGTTGA 59.679 38.462 0.00 0.00 0.00 3.18
3747 3870 6.461509 GGCCATTAAGAACATTGGGATAGTTG 60.462 42.308 0.00 0.00 0.00 3.16
3748 3871 5.598417 GGCCATTAAGAACATTGGGATAGTT 59.402 40.000 0.00 0.00 0.00 2.24
3749 3872 5.140454 GGCCATTAAGAACATTGGGATAGT 58.860 41.667 0.00 0.00 0.00 2.12
3750 3873 5.139727 TGGCCATTAAGAACATTGGGATAG 58.860 41.667 0.00 0.00 0.00 2.08
3751 3874 5.136068 TGGCCATTAAGAACATTGGGATA 57.864 39.130 0.00 0.00 0.00 2.59
3752 3875 3.992999 TGGCCATTAAGAACATTGGGAT 58.007 40.909 0.00 0.00 0.00 3.85
3753 3876 3.464720 TGGCCATTAAGAACATTGGGA 57.535 42.857 0.00 0.00 0.00 4.37
3754 3877 3.962718 AGATGGCCATTAAGAACATTGGG 59.037 43.478 21.84 0.00 0.00 4.12
3755 3878 4.261322 CGAGATGGCCATTAAGAACATTGG 60.261 45.833 21.84 0.00 0.00 3.16
3756 3879 4.336433 ACGAGATGGCCATTAAGAACATTG 59.664 41.667 21.84 5.45 0.00 2.82
3757 3880 4.526970 ACGAGATGGCCATTAAGAACATT 58.473 39.130 21.84 0.00 0.00 2.71
3758 3881 4.156455 ACGAGATGGCCATTAAGAACAT 57.844 40.909 21.84 0.00 0.00 2.71
3759 3882 3.627395 ACGAGATGGCCATTAAGAACA 57.373 42.857 21.84 0.00 0.00 3.18
3760 3883 4.438744 CCAAACGAGATGGCCATTAAGAAC 60.439 45.833 21.84 5.63 0.00 3.01
3761 3884 3.694072 CCAAACGAGATGGCCATTAAGAA 59.306 43.478 21.84 0.00 0.00 2.52
3762 3885 3.278574 CCAAACGAGATGGCCATTAAGA 58.721 45.455 21.84 0.00 0.00 2.10
3763 3886 3.016736 ACCAAACGAGATGGCCATTAAG 58.983 45.455 21.84 15.88 41.89 1.85
3764 3887 3.080300 ACCAAACGAGATGGCCATTAA 57.920 42.857 21.84 0.00 41.89 1.40
3765 3888 2.799126 ACCAAACGAGATGGCCATTA 57.201 45.000 21.84 0.00 41.89 1.90
3766 3889 2.026262 AGTACCAAACGAGATGGCCATT 60.026 45.455 21.84 9.99 41.89 3.16
3767 3890 1.559682 AGTACCAAACGAGATGGCCAT 59.440 47.619 20.96 20.96 41.89 4.40
3768 3891 0.981183 AGTACCAAACGAGATGGCCA 59.019 50.000 8.56 8.56 41.89 5.36
3769 3892 1.066430 TCAGTACCAAACGAGATGGCC 60.066 52.381 0.00 0.00 41.89 5.36
3770 3893 2.271800 CTCAGTACCAAACGAGATGGC 58.728 52.381 0.00 0.00 41.89 4.40
3778 3901 5.176592 GGATAGTTGACCTCAGTACCAAAC 58.823 45.833 0.00 0.00 0.00 2.93
3785 3908 5.520748 AAATTGGGATAGTTGACCTCAGT 57.479 39.130 0.00 0.00 0.00 3.41
3937 4067 7.326968 AGTTGCTAATAAAAAGATGCTCTCC 57.673 36.000 0.00 0.00 0.00 3.71
3979 4109 6.394025 TTTTCGGTGGCTAATTTTAGTTGT 57.606 33.333 0.00 0.00 33.32 3.32
4062 4192 2.741517 AGGTGTTTTGCTTTGTTGTTGC 59.258 40.909 0.00 0.00 0.00 4.17
4092 4222 3.769844 CACCCAGTGGTAGAGTCTACAAT 59.230 47.826 27.41 12.97 45.57 2.71
4131 4261 9.903682 TGCAAAATTTTCAAGTTCAAATTTTCA 57.096 22.222 17.45 15.68 44.84 2.69
4169 4299 5.652452 GGGGTCTTGTTGTTGCTTAGATATT 59.348 40.000 0.00 0.00 0.00 1.28
4170 4300 5.193679 GGGGTCTTGTTGTTGCTTAGATAT 58.806 41.667 0.00 0.00 0.00 1.63
4183 4313 1.158007 AAGTGGATGGGGGTCTTGTT 58.842 50.000 0.00 0.00 0.00 2.83
4218 4348 8.807581 GTTTTTCGCCTCATATTTATGGAAAAG 58.192 33.333 9.97 0.00 34.63 2.27
4238 4368 4.664150 TCCTTGTGGGACATTGTTTTTC 57.336 40.909 0.00 0.00 44.52 2.29
4273 4403 5.854010 ACTGTTTGAGAGACTACTTGACA 57.146 39.130 0.00 0.00 0.00 3.58
4308 4438 1.006832 CCCTACGCTTTTGGTCATCG 58.993 55.000 0.00 0.00 0.00 3.84
4327 4457 8.999220 ATACTTTAGCAAAAGGTACTACAGAC 57.001 34.615 3.19 0.00 45.39 3.51
4334 4464 7.766219 TCGATGATACTTTAGCAAAAGGTAC 57.234 36.000 3.19 0.00 45.39 3.34
4342 4472 8.492673 AAAATGTCTTCGATGATACTTTAGCA 57.507 30.769 4.12 0.00 0.00 3.49
4378 4508 6.328934 AGTTGTGGAAAGGGGAAATGTTTAAT 59.671 34.615 0.00 0.00 0.00 1.40
4380 4510 5.212745 AGTTGTGGAAAGGGGAAATGTTTA 58.787 37.500 0.00 0.00 0.00 2.01
4381 4511 4.037222 AGTTGTGGAAAGGGGAAATGTTT 58.963 39.130 0.00 0.00 0.00 2.83
4382 4512 3.653164 AGTTGTGGAAAGGGGAAATGTT 58.347 40.909 0.00 0.00 0.00 2.71
4383 4513 3.328535 AGTTGTGGAAAGGGGAAATGT 57.671 42.857 0.00 0.00 0.00 2.71
4384 4514 3.193479 GCTAGTTGTGGAAAGGGGAAATG 59.807 47.826 0.00 0.00 0.00 2.32
4385 4515 3.431415 GCTAGTTGTGGAAAGGGGAAAT 58.569 45.455 0.00 0.00 0.00 2.17
4386 4516 2.490168 GGCTAGTTGTGGAAAGGGGAAA 60.490 50.000 0.00 0.00 0.00 3.13
4387 4517 1.074889 GGCTAGTTGTGGAAAGGGGAA 59.925 52.381 0.00 0.00 0.00 3.97
4388 4518 0.696501 GGCTAGTTGTGGAAAGGGGA 59.303 55.000 0.00 0.00 0.00 4.81
4389 4519 0.698818 AGGCTAGTTGTGGAAAGGGG 59.301 55.000 0.00 0.00 0.00 4.79
4390 4520 1.351017 TCAGGCTAGTTGTGGAAAGGG 59.649 52.381 0.00 0.00 0.00 3.95
4391 4521 2.303022 TCTCAGGCTAGTTGTGGAAAGG 59.697 50.000 0.00 0.00 0.00 3.11
4392 4522 3.330267 GTCTCAGGCTAGTTGTGGAAAG 58.670 50.000 0.00 0.00 0.00 2.62
4393 4523 2.038557 GGTCTCAGGCTAGTTGTGGAAA 59.961 50.000 0.00 0.00 0.00 3.13
4394 4524 1.623811 GGTCTCAGGCTAGTTGTGGAA 59.376 52.381 0.00 0.00 0.00 3.53
4395 4525 1.267121 GGTCTCAGGCTAGTTGTGGA 58.733 55.000 0.00 0.00 0.00 4.02
4396 4526 0.250513 GGGTCTCAGGCTAGTTGTGG 59.749 60.000 0.00 0.00 0.00 4.17
4397 4527 0.976641 TGGGTCTCAGGCTAGTTGTG 59.023 55.000 0.00 0.00 0.00 3.33
4398 4528 1.625818 CTTGGGTCTCAGGCTAGTTGT 59.374 52.381 0.00 0.00 0.00 3.32
4399 4529 1.677217 GCTTGGGTCTCAGGCTAGTTG 60.677 57.143 0.00 0.00 44.03 3.16
4400 4530 0.615850 GCTTGGGTCTCAGGCTAGTT 59.384 55.000 0.00 0.00 44.03 2.24
4401 4531 2.291856 GCTTGGGTCTCAGGCTAGT 58.708 57.895 0.00 0.00 44.03 2.57
4406 4536 4.843728 TGTTTAATAGCTTGGGTCTCAGG 58.156 43.478 0.00 0.00 0.00 3.86
4407 4537 7.396540 AAATGTTTAATAGCTTGGGTCTCAG 57.603 36.000 0.00 0.00 0.00 3.35
4408 4538 6.377146 GGAAATGTTTAATAGCTTGGGTCTCA 59.623 38.462 0.00 0.00 0.00 3.27
4409 4539 6.183360 GGGAAATGTTTAATAGCTTGGGTCTC 60.183 42.308 0.00 0.00 0.00 3.36
4410 4540 5.656859 GGGAAATGTTTAATAGCTTGGGTCT 59.343 40.000 0.00 0.00 0.00 3.85
4411 4541 5.163447 GGGGAAATGTTTAATAGCTTGGGTC 60.163 44.000 0.00 0.00 0.00 4.46
4412 4542 4.714802 GGGGAAATGTTTAATAGCTTGGGT 59.285 41.667 0.00 0.00 0.00 4.51
4413 4543 4.962362 AGGGGAAATGTTTAATAGCTTGGG 59.038 41.667 0.00 0.00 0.00 4.12
4414 4544 6.544928 AAGGGGAAATGTTTAATAGCTTGG 57.455 37.500 0.00 0.00 0.00 3.61
4415 4545 7.041721 GGAAAGGGGAAATGTTTAATAGCTTG 58.958 38.462 0.00 0.00 0.00 4.01
4416 4546 6.728632 TGGAAAGGGGAAATGTTTAATAGCTT 59.271 34.615 0.00 0.00 0.00 3.74
4417 4547 6.154534 GTGGAAAGGGGAAATGTTTAATAGCT 59.845 38.462 0.00 0.00 0.00 3.32
4418 4548 6.071051 TGTGGAAAGGGGAAATGTTTAATAGC 60.071 38.462 0.00 0.00 0.00 2.97
4419 4549 7.475137 TGTGGAAAGGGGAAATGTTTAATAG 57.525 36.000 0.00 0.00 0.00 1.73
4420 4550 7.511028 AGTTGTGGAAAGGGGAAATGTTTAATA 59.489 33.333 0.00 0.00 0.00 0.98
4421 4551 6.328934 AGTTGTGGAAAGGGGAAATGTTTAAT 59.671 34.615 0.00 0.00 0.00 1.40
4422 4552 5.663556 AGTTGTGGAAAGGGGAAATGTTTAA 59.336 36.000 0.00 0.00 0.00 1.52
4423 4553 5.212745 AGTTGTGGAAAGGGGAAATGTTTA 58.787 37.500 0.00 0.00 0.00 2.01
4450 4764 2.550606 GTGTATCTAGCTCGGGTCTCAG 59.449 54.545 0.00 0.00 0.00 3.35
4454 4768 2.608261 GCATGTGTATCTAGCTCGGGTC 60.608 54.545 0.00 0.00 0.00 4.46
4529 4851 0.108520 CTTTGCGCCAAGGATGCAAT 60.109 50.000 13.21 0.00 46.78 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.