Multiple sequence alignment - TraesCS5A01G266700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G266700 chr5A 100.000 3077 0 0 1 3077 478020546 478017470 0.000000e+00 5683.0
1 TraesCS5A01G266700 chr5A 92.683 41 2 1 374 413 536362201 536362161 1.190000e-04 58.4
2 TraesCS5A01G266700 chr5D 91.494 2610 133 41 526 3077 377489142 377486564 0.000000e+00 3507.0
3 TraesCS5A01G266700 chr5D 88.406 138 8 4 165 302 524590890 524591019 3.180000e-35 159.0
4 TraesCS5A01G266700 chr5B 91.508 2367 137 32 476 2795 450775421 450773072 0.000000e+00 3199.0
5 TraesCS5A01G266700 chr5B 89.600 125 10 2 165 289 506503264 506503385 4.110000e-34 156.0
6 TraesCS5A01G266700 chr7B 76.621 663 127 20 999 1650 185390942 185390297 1.060000e-89 340.0
7 TraesCS5A01G266700 chr7B 100.000 31 0 0 374 404 662680897 662680927 1.190000e-04 58.4
8 TraesCS5A01G266700 chr7A 75.532 752 145 28 997 1736 227958978 227958254 1.770000e-87 333.0
9 TraesCS5A01G266700 chr3B 83.810 315 28 10 1 300 613754318 613754624 8.400000e-71 278.0
10 TraesCS5A01G266700 chr6A 90.260 154 13 2 148 300 22072732 22072580 1.870000e-47 200.0
11 TraesCS5A01G266700 chr6A 94.286 35 2 0 376 410 563197479 563197445 2.000000e-03 54.7
12 TraesCS5A01G266700 chr1D 92.727 110 8 0 193 302 246507913 246508022 3.180000e-35 159.0
13 TraesCS5A01G266700 chr1D 86.957 138 11 4 165 302 8012504 8012374 6.870000e-32 148.0
14 TraesCS5A01G266700 chr3D 87.681 138 12 4 165 302 105175495 105175627 4.110000e-34 156.0
15 TraesCS5A01G266700 chr3D 87.681 138 10 4 165 302 306086827 306086697 1.480000e-33 154.0
16 TraesCS5A01G266700 chr3D 89.320 103 11 0 308 410 320413005 320412903 2.490000e-26 130.0
17 TraesCS5A01G266700 chr4B 86.765 136 11 4 165 300 636774262 636774390 8.890000e-31 145.0
18 TraesCS5A01G266700 chr2D 90.385 104 10 0 308 411 578203075 578202972 1.490000e-28 137.0
19 TraesCS5A01G266700 chr1B 88.679 53 5 1 366 418 270310057 270310006 2.560000e-06 63.9
20 TraesCS5A01G266700 chr1B 100.000 31 0 0 374 404 430026694 430026724 1.190000e-04 58.4
21 TraesCS5A01G266700 chr2B 100.000 30 0 0 374 403 411488885 411488856 4.290000e-04 56.5
22 TraesCS5A01G266700 chr1A 94.286 35 2 0 376 410 119714815 119714781 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G266700 chr5A 478017470 478020546 3076 True 5683 5683 100.000 1 3077 1 chr5A.!!$R1 3076
1 TraesCS5A01G266700 chr5D 377486564 377489142 2578 True 3507 3507 91.494 526 3077 1 chr5D.!!$R1 2551
2 TraesCS5A01G266700 chr5B 450773072 450775421 2349 True 3199 3199 91.508 476 2795 1 chr5B.!!$R1 2319
3 TraesCS5A01G266700 chr7B 185390297 185390942 645 True 340 340 76.621 999 1650 1 chr7B.!!$R1 651
4 TraesCS5A01G266700 chr7A 227958254 227958978 724 True 333 333 75.532 997 1736 1 chr7A.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.179134 AAGTAGCTGGCATCGTCGAC 60.179 55.0 5.18 5.18 0.0 4.20 F
1739 1769 0.179032 ATTGAACAGACACCACGCCA 60.179 50.0 0.00 0.00 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 1908 0.038166 GGTTGACCCCAATCTCAGCA 59.962 55.0 0.0 0.0 34.39 4.41 R
3030 3110 0.240945 GTGTCCATTTGGTTCGCTGG 59.759 55.0 0.0 0.0 36.34 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.884257 GCAATAGGGCCGCGTCGA 62.884 66.667 4.92 0.00 0.00 4.20
45 46 2.960129 CAATAGGGCCGCGTCGAC 60.960 66.667 5.18 5.18 0.00 4.20
46 47 3.454573 AATAGGGCCGCGTCGACA 61.455 61.111 17.16 0.00 0.00 4.35
47 48 3.009192 AATAGGGCCGCGTCGACAA 62.009 57.895 17.16 0.00 0.00 3.18
48 49 2.901051 AATAGGGCCGCGTCGACAAG 62.901 60.000 17.16 8.32 0.00 3.16
50 51 4.424566 GGGCCGCGTCGACAAGTA 62.425 66.667 17.16 0.00 0.00 2.24
51 52 2.879462 GGCCGCGTCGACAAGTAG 60.879 66.667 17.16 0.00 0.00 2.57
52 53 3.542742 GCCGCGTCGACAAGTAGC 61.543 66.667 17.16 9.31 0.00 3.58
53 54 2.178521 CCGCGTCGACAAGTAGCT 59.821 61.111 17.16 0.00 0.00 3.32
54 55 2.152699 CCGCGTCGACAAGTAGCTG 61.153 63.158 17.16 2.91 0.00 4.24
55 56 2.152699 CGCGTCGACAAGTAGCTGG 61.153 63.158 17.16 0.00 0.00 4.85
56 57 2.445438 GCGTCGACAAGTAGCTGGC 61.445 63.158 17.16 3.35 0.00 4.85
57 58 1.080772 CGTCGACAAGTAGCTGGCA 60.081 57.895 17.16 0.00 0.00 4.92
58 59 0.458543 CGTCGACAAGTAGCTGGCAT 60.459 55.000 17.16 0.00 0.00 4.40
59 60 1.281899 GTCGACAAGTAGCTGGCATC 58.718 55.000 11.55 0.00 0.00 3.91
60 61 0.179137 TCGACAAGTAGCTGGCATCG 60.179 55.000 0.00 0.00 0.00 3.84
61 62 0.458543 CGACAAGTAGCTGGCATCGT 60.459 55.000 0.00 0.00 0.00 3.73
62 63 1.281899 GACAAGTAGCTGGCATCGTC 58.718 55.000 0.00 0.00 0.00 4.20
63 64 0.458543 ACAAGTAGCTGGCATCGTCG 60.459 55.000 0.00 0.00 0.00 5.12
64 65 0.179137 CAAGTAGCTGGCATCGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
65 66 0.179134 AAGTAGCTGGCATCGTCGAC 60.179 55.000 5.18 5.18 0.00 4.20
66 67 1.589196 GTAGCTGGCATCGTCGACC 60.589 63.158 10.58 0.00 0.00 4.79
67 68 2.049767 TAGCTGGCATCGTCGACCA 61.050 57.895 10.58 0.00 0.00 4.02
69 70 2.887568 CTGGCATCGTCGACCAGC 60.888 66.667 16.38 11.26 44.16 4.85
70 71 4.794439 TGGCATCGTCGACCAGCG 62.794 66.667 10.58 0.00 42.69 5.18
101 102 3.284449 GCCGCCGTTGTTGGACTT 61.284 61.111 0.00 0.00 0.00 3.01
102 103 2.637025 CCGCCGTTGTTGGACTTG 59.363 61.111 0.00 0.00 0.00 3.16
103 104 2.637025 CGCCGTTGTTGGACTTGG 59.363 61.111 0.00 0.00 0.00 3.61
104 105 2.184167 CGCCGTTGTTGGACTTGGT 61.184 57.895 0.00 0.00 0.00 3.67
105 106 1.358759 GCCGTTGTTGGACTTGGTG 59.641 57.895 0.00 0.00 0.00 4.17
106 107 2.029743 CCGTTGTTGGACTTGGTGG 58.970 57.895 0.00 0.00 0.00 4.61
107 108 1.358759 CGTTGTTGGACTTGGTGGC 59.641 57.895 0.00 0.00 0.00 5.01
108 109 1.358759 GTTGTTGGACTTGGTGGCG 59.641 57.895 0.00 0.00 0.00 5.69
109 110 1.098712 GTTGTTGGACTTGGTGGCGA 61.099 55.000 0.00 0.00 0.00 5.54
110 111 0.817634 TTGTTGGACTTGGTGGCGAG 60.818 55.000 0.00 0.00 0.00 5.03
111 112 1.966451 GTTGGACTTGGTGGCGAGG 60.966 63.158 0.00 0.00 0.00 4.63
112 113 2.144078 TTGGACTTGGTGGCGAGGA 61.144 57.895 0.00 0.00 0.00 3.71
113 114 2.111999 TTGGACTTGGTGGCGAGGAG 62.112 60.000 0.00 0.00 0.00 3.69
161 162 4.154347 CCGACCAGCAGCTCCCTC 62.154 72.222 0.00 0.00 0.00 4.30
162 163 3.385384 CGACCAGCAGCTCCCTCA 61.385 66.667 0.00 0.00 0.00 3.86
163 164 2.947532 CGACCAGCAGCTCCCTCAA 61.948 63.158 0.00 0.00 0.00 3.02
164 165 1.078567 GACCAGCAGCTCCCTCAAG 60.079 63.158 0.00 0.00 0.00 3.02
165 166 2.271497 CCAGCAGCTCCCTCAAGG 59.729 66.667 0.00 0.00 0.00 3.61
180 181 5.248380 CCTCAAGGGATTAAGGATTAGGG 57.752 47.826 0.00 0.00 37.23 3.53
181 182 4.043435 CCTCAAGGGATTAAGGATTAGGGG 59.957 50.000 0.00 0.00 37.23 4.79
182 183 4.913968 CTCAAGGGATTAAGGATTAGGGGA 59.086 45.833 0.00 0.00 0.00 4.81
183 184 4.913968 TCAAGGGATTAAGGATTAGGGGAG 59.086 45.833 0.00 0.00 0.00 4.30
184 185 4.871806 AGGGATTAAGGATTAGGGGAGA 57.128 45.455 0.00 0.00 0.00 3.71
185 186 4.769050 AGGGATTAAGGATTAGGGGAGAG 58.231 47.826 0.00 0.00 0.00 3.20
186 187 4.427406 AGGGATTAAGGATTAGGGGAGAGA 59.573 45.833 0.00 0.00 0.00 3.10
187 188 4.780554 GGGATTAAGGATTAGGGGAGAGAG 59.219 50.000 0.00 0.00 0.00 3.20
188 189 5.461317 GGGATTAAGGATTAGGGGAGAGAGA 60.461 48.000 0.00 0.00 0.00 3.10
189 190 5.719563 GGATTAAGGATTAGGGGAGAGAGAG 59.280 48.000 0.00 0.00 0.00 3.20
190 191 3.628832 AAGGATTAGGGGAGAGAGAGG 57.371 52.381 0.00 0.00 0.00 3.69
191 192 1.792651 AGGATTAGGGGAGAGAGAGGG 59.207 57.143 0.00 0.00 0.00 4.30
192 193 1.203250 GGATTAGGGGAGAGAGAGGGG 60.203 61.905 0.00 0.00 0.00 4.79
193 194 0.871024 ATTAGGGGAGAGAGAGGGGG 59.129 60.000 0.00 0.00 0.00 5.40
211 212 4.092116 GGGGGAGATGGATTAACTTGAG 57.908 50.000 0.00 0.00 0.00 3.02
212 213 3.716872 GGGGGAGATGGATTAACTTGAGA 59.283 47.826 0.00 0.00 0.00 3.27
213 214 4.445019 GGGGGAGATGGATTAACTTGAGAC 60.445 50.000 0.00 0.00 0.00 3.36
214 215 4.164221 GGGGAGATGGATTAACTTGAGACA 59.836 45.833 0.00 0.00 0.00 3.41
215 216 5.119694 GGGAGATGGATTAACTTGAGACAC 58.880 45.833 0.00 0.00 0.00 3.67
216 217 4.806247 GGAGATGGATTAACTTGAGACACG 59.194 45.833 0.00 0.00 0.00 4.49
217 218 4.184629 AGATGGATTAACTTGAGACACGC 58.815 43.478 0.00 0.00 0.00 5.34
218 219 2.333926 TGGATTAACTTGAGACACGCG 58.666 47.619 3.53 3.53 0.00 6.01
219 220 2.288579 TGGATTAACTTGAGACACGCGT 60.289 45.455 5.58 5.58 0.00 6.01
220 221 2.344741 GGATTAACTTGAGACACGCGTC 59.655 50.000 9.86 0.00 42.95 5.19
230 231 1.192793 GACACGCGTCTTCATAGAGC 58.807 55.000 9.86 0.00 39.22 4.09
231 232 0.179134 ACACGCGTCTTCATAGAGCC 60.179 55.000 9.86 0.00 0.00 4.70
232 233 0.179137 CACGCGTCTTCATAGAGCCA 60.179 55.000 9.86 0.00 0.00 4.75
233 234 0.179134 ACGCGTCTTCATAGAGCCAC 60.179 55.000 5.58 0.00 0.00 5.01
234 235 0.872021 CGCGTCTTCATAGAGCCACC 60.872 60.000 0.00 0.00 0.00 4.61
235 236 0.530870 GCGTCTTCATAGAGCCACCC 60.531 60.000 0.00 0.00 0.00 4.61
236 237 0.824109 CGTCTTCATAGAGCCACCCA 59.176 55.000 0.00 0.00 0.00 4.51
237 238 1.471676 CGTCTTCATAGAGCCACCCAC 60.472 57.143 0.00 0.00 0.00 4.61
238 239 0.824109 TCTTCATAGAGCCACCCACG 59.176 55.000 0.00 0.00 0.00 4.94
239 240 0.537188 CTTCATAGAGCCACCCACGT 59.463 55.000 0.00 0.00 0.00 4.49
240 241 0.249120 TTCATAGAGCCACCCACGTG 59.751 55.000 9.08 9.08 39.91 4.49
241 242 1.815421 CATAGAGCCACCCACGTGC 60.815 63.158 10.91 0.00 38.79 5.34
242 243 3.371097 ATAGAGCCACCCACGTGCG 62.371 63.158 10.91 3.82 38.79 5.34
253 254 4.742201 ACGTGCGCCTCGAAGCAT 62.742 61.111 24.31 3.28 45.69 3.79
254 255 3.918220 CGTGCGCCTCGAAGCATC 61.918 66.667 15.17 0.00 45.69 3.91
264 265 4.537433 GAAGCATCGCTCGGGCCT 62.537 66.667 0.00 0.00 38.25 5.19
265 266 4.845580 AAGCATCGCTCGGGCCTG 62.846 66.667 4.71 4.71 38.25 4.85
277 278 3.717294 GGCCTGGCTCTCGGGAAA 61.717 66.667 19.68 0.00 44.90 3.13
278 279 2.436824 GCCTGGCTCTCGGGAAAC 60.437 66.667 12.43 0.00 44.90 2.78
279 280 2.960688 GCCTGGCTCTCGGGAAACT 61.961 63.158 12.43 0.00 44.90 2.66
280 281 1.078848 CCTGGCTCTCGGGAAACTG 60.079 63.158 0.00 0.00 44.90 3.16
281 282 1.743252 CTGGCTCTCGGGAAACTGC 60.743 63.158 0.00 0.00 36.33 4.40
282 283 2.436824 GGCTCTCGGGAAACTGCC 60.437 66.667 0.00 0.00 36.33 4.85
300 301 3.941194 CGATTCGGTCGTTTCCAAC 57.059 52.632 0.00 0.00 45.19 3.77
309 310 3.351450 GTTTCCAACGAGGGGTGC 58.649 61.111 0.00 0.00 38.24 5.01
310 311 2.281208 TTTCCAACGAGGGGTGCG 60.281 61.111 0.00 0.00 38.24 5.34
311 312 3.835790 TTTCCAACGAGGGGTGCGG 62.836 63.158 0.00 0.00 38.24 5.69
321 322 4.643387 GGGTGCGGGCTCAACAGT 62.643 66.667 0.00 0.00 0.00 3.55
322 323 3.357079 GGTGCGGGCTCAACAGTG 61.357 66.667 0.00 0.00 0.00 3.66
323 324 2.591715 GTGCGGGCTCAACAGTGT 60.592 61.111 0.00 0.00 0.00 3.55
324 325 1.301401 GTGCGGGCTCAACAGTGTA 60.301 57.895 0.00 0.00 0.00 2.90
325 326 0.673644 GTGCGGGCTCAACAGTGTAT 60.674 55.000 0.00 0.00 0.00 2.29
326 327 0.673333 TGCGGGCTCAACAGTGTATG 60.673 55.000 0.00 0.00 0.00 2.39
327 328 1.982073 GCGGGCTCAACAGTGTATGC 61.982 60.000 0.00 1.16 0.00 3.14
328 329 1.695893 CGGGCTCAACAGTGTATGCG 61.696 60.000 0.00 0.00 0.00 4.73
329 330 0.391130 GGGCTCAACAGTGTATGCGA 60.391 55.000 0.00 0.00 0.00 5.10
330 331 1.002366 GGCTCAACAGTGTATGCGAG 58.998 55.000 0.00 1.98 35.70 5.03
331 332 1.002366 GCTCAACAGTGTATGCGAGG 58.998 55.000 0.00 0.00 34.03 4.63
332 333 1.404181 GCTCAACAGTGTATGCGAGGA 60.404 52.381 0.00 0.00 34.03 3.71
333 334 2.930887 GCTCAACAGTGTATGCGAGGAA 60.931 50.000 0.00 0.00 34.03 3.36
334 335 2.668457 CTCAACAGTGTATGCGAGGAAC 59.332 50.000 0.00 0.00 31.21 3.62
335 336 1.390123 CAACAGTGTATGCGAGGAACG 59.610 52.381 0.00 0.00 45.66 3.95
336 337 0.885879 ACAGTGTATGCGAGGAACGA 59.114 50.000 0.00 0.00 45.77 3.85
337 338 1.271379 ACAGTGTATGCGAGGAACGAA 59.729 47.619 0.00 0.00 45.77 3.85
338 339 2.288579 ACAGTGTATGCGAGGAACGAAA 60.289 45.455 0.00 0.00 45.77 3.46
339 340 2.092211 CAGTGTATGCGAGGAACGAAAC 59.908 50.000 0.00 0.00 45.77 2.78
340 341 2.063266 GTGTATGCGAGGAACGAAACA 58.937 47.619 0.00 0.00 45.77 2.83
341 342 2.477375 GTGTATGCGAGGAACGAAACAA 59.523 45.455 0.00 0.00 45.77 2.83
342 343 2.477375 TGTATGCGAGGAACGAAACAAC 59.523 45.455 0.00 0.00 45.77 3.32
343 344 0.872388 ATGCGAGGAACGAAACAACC 59.128 50.000 0.00 0.00 45.77 3.77
344 345 1.203313 GCGAGGAACGAAACAACCG 59.797 57.895 0.00 0.00 45.77 4.44
345 346 1.216941 GCGAGGAACGAAACAACCGA 61.217 55.000 0.00 0.00 45.77 4.69
346 347 0.782384 CGAGGAACGAAACAACCGAG 59.218 55.000 0.00 0.00 45.77 4.63
347 348 1.145803 GAGGAACGAAACAACCGAGG 58.854 55.000 0.00 0.00 0.00 4.63
348 349 0.466963 AGGAACGAAACAACCGAGGT 59.533 50.000 0.00 0.00 0.00 3.85
349 350 1.134310 AGGAACGAAACAACCGAGGTT 60.134 47.619 0.93 0.93 39.13 3.50
350 351 1.262417 GGAACGAAACAACCGAGGTTC 59.738 52.381 4.25 0.00 36.00 3.62
351 352 1.935199 GAACGAAACAACCGAGGTTCA 59.065 47.619 4.25 0.00 36.00 3.18
352 353 2.027003 ACGAAACAACCGAGGTTCAA 57.973 45.000 4.25 0.00 36.00 2.69
353 354 2.358015 ACGAAACAACCGAGGTTCAAA 58.642 42.857 4.25 0.00 36.00 2.69
354 355 2.748532 ACGAAACAACCGAGGTTCAAAA 59.251 40.909 4.25 0.00 36.00 2.44
355 356 3.190953 ACGAAACAACCGAGGTTCAAAAA 59.809 39.130 4.25 0.00 36.00 1.94
356 357 3.789224 CGAAACAACCGAGGTTCAAAAAG 59.211 43.478 4.25 0.00 36.00 2.27
357 358 4.437659 CGAAACAACCGAGGTTCAAAAAGA 60.438 41.667 4.25 0.00 36.00 2.52
358 359 5.588240 GAAACAACCGAGGTTCAAAAAGAT 58.412 37.500 4.25 0.00 36.00 2.40
359 360 6.512091 CGAAACAACCGAGGTTCAAAAAGATA 60.512 38.462 4.25 0.00 36.00 1.98
360 361 5.684550 ACAACCGAGGTTCAAAAAGATAC 57.315 39.130 4.25 0.00 36.00 2.24
361 362 5.374071 ACAACCGAGGTTCAAAAAGATACT 58.626 37.500 4.25 0.00 36.00 2.12
362 363 5.238650 ACAACCGAGGTTCAAAAAGATACTG 59.761 40.000 4.25 0.00 36.00 2.74
363 364 3.751698 ACCGAGGTTCAAAAAGATACTGC 59.248 43.478 0.00 0.00 0.00 4.40
364 365 3.751175 CCGAGGTTCAAAAAGATACTGCA 59.249 43.478 0.00 0.00 0.00 4.41
365 366 4.378459 CCGAGGTTCAAAAAGATACTGCAC 60.378 45.833 0.00 0.00 0.00 4.57
366 367 4.378459 CGAGGTTCAAAAAGATACTGCACC 60.378 45.833 0.00 0.00 0.00 5.01
367 368 3.502211 AGGTTCAAAAAGATACTGCACCG 59.498 43.478 0.00 0.00 0.00 4.94
368 369 3.234386 GTTCAAAAAGATACTGCACCGC 58.766 45.455 0.00 0.00 0.00 5.68
369 370 2.499197 TCAAAAAGATACTGCACCGCA 58.501 42.857 0.00 0.00 36.92 5.69
370 371 2.225491 TCAAAAAGATACTGCACCGCAC 59.775 45.455 0.00 0.00 33.79 5.34
371 372 1.890876 AAAAGATACTGCACCGCACA 58.109 45.000 0.00 0.00 33.79 4.57
372 373 1.156736 AAAGATACTGCACCGCACAC 58.843 50.000 0.00 0.00 33.79 3.82
373 374 1.014044 AAGATACTGCACCGCACACG 61.014 55.000 0.00 0.00 33.79 4.49
374 375 3.083600 GATACTGCACCGCACACGC 62.084 63.158 0.00 0.00 38.22 5.34
391 392 2.671070 CCTGGTTGGGCTCGATGT 59.329 61.111 0.00 0.00 0.00 3.06
392 393 1.746615 CCTGGTTGGGCTCGATGTG 60.747 63.158 0.00 0.00 0.00 3.21
393 394 1.746615 CTGGTTGGGCTCGATGTGG 60.747 63.158 0.00 0.00 0.00 4.17
394 395 2.438434 GGTTGGGCTCGATGTGGG 60.438 66.667 0.00 0.00 0.00 4.61
395 396 3.134127 GTTGGGCTCGATGTGGGC 61.134 66.667 0.00 0.00 0.00 5.36
396 397 3.645660 TTGGGCTCGATGTGGGCA 61.646 61.111 0.00 0.00 0.00 5.36
397 398 3.203086 TTGGGCTCGATGTGGGCAA 62.203 57.895 0.00 0.00 0.00 4.52
398 399 3.134127 GGGCTCGATGTGGGCAAC 61.134 66.667 0.00 0.00 0.00 4.17
410 411 4.150994 GGCAACCAAACTCGTCCA 57.849 55.556 0.00 0.00 0.00 4.02
411 412 2.641197 GGCAACCAAACTCGTCCAT 58.359 52.632 0.00 0.00 0.00 3.41
412 413 1.816074 GGCAACCAAACTCGTCCATA 58.184 50.000 0.00 0.00 0.00 2.74
413 414 1.737793 GGCAACCAAACTCGTCCATAG 59.262 52.381 0.00 0.00 0.00 2.23
414 415 2.423577 GCAACCAAACTCGTCCATAGT 58.576 47.619 0.00 0.00 0.00 2.12
415 416 3.592059 GCAACCAAACTCGTCCATAGTA 58.408 45.455 0.00 0.00 0.00 1.82
416 417 3.617263 GCAACCAAACTCGTCCATAGTAG 59.383 47.826 0.00 0.00 0.00 2.57
417 418 3.521947 ACCAAACTCGTCCATAGTAGC 57.478 47.619 0.00 0.00 0.00 3.58
418 419 2.167900 ACCAAACTCGTCCATAGTAGCC 59.832 50.000 0.00 0.00 0.00 3.93
419 420 2.483188 CCAAACTCGTCCATAGTAGCCC 60.483 54.545 0.00 0.00 0.00 5.19
420 421 2.154567 AACTCGTCCATAGTAGCCCA 57.845 50.000 0.00 0.00 0.00 5.36
421 422 2.383442 ACTCGTCCATAGTAGCCCAT 57.617 50.000 0.00 0.00 0.00 4.00
422 423 3.520691 ACTCGTCCATAGTAGCCCATA 57.479 47.619 0.00 0.00 0.00 2.74
423 424 3.422796 ACTCGTCCATAGTAGCCCATAG 58.577 50.000 0.00 0.00 0.00 2.23
424 425 3.181431 ACTCGTCCATAGTAGCCCATAGT 60.181 47.826 0.00 0.00 0.00 2.12
425 426 4.042560 ACTCGTCCATAGTAGCCCATAGTA 59.957 45.833 0.00 0.00 0.00 1.82
426 427 4.330250 TCGTCCATAGTAGCCCATAGTAC 58.670 47.826 0.00 0.00 0.00 2.73
427 428 4.077108 CGTCCATAGTAGCCCATAGTACA 58.923 47.826 0.00 0.00 0.00 2.90
428 429 4.082895 CGTCCATAGTAGCCCATAGTACAC 60.083 50.000 0.00 0.00 0.00 2.90
429 430 4.220163 GTCCATAGTAGCCCATAGTACACC 59.780 50.000 0.00 0.00 0.00 4.16
430 431 3.514309 CCATAGTAGCCCATAGTACACCC 59.486 52.174 0.00 0.00 0.00 4.61
431 432 2.860817 AGTAGCCCATAGTACACCCA 57.139 50.000 0.00 0.00 0.00 4.51
432 433 2.395619 AGTAGCCCATAGTACACCCAC 58.604 52.381 0.00 0.00 0.00 4.61
433 434 2.112998 GTAGCCCATAGTACACCCACA 58.887 52.381 0.00 0.00 0.00 4.17
434 435 1.893315 AGCCCATAGTACACCCACAT 58.107 50.000 0.00 0.00 0.00 3.21
435 436 1.768870 AGCCCATAGTACACCCACATC 59.231 52.381 0.00 0.00 0.00 3.06
436 437 1.768870 GCCCATAGTACACCCACATCT 59.231 52.381 0.00 0.00 0.00 2.90
437 438 2.172717 GCCCATAGTACACCCACATCTT 59.827 50.000 0.00 0.00 0.00 2.40
438 439 3.808728 CCCATAGTACACCCACATCTTG 58.191 50.000 0.00 0.00 0.00 3.02
439 440 3.206150 CCATAGTACACCCACATCTTGC 58.794 50.000 0.00 0.00 0.00 4.01
440 441 3.370421 CCATAGTACACCCACATCTTGCA 60.370 47.826 0.00 0.00 0.00 4.08
441 442 2.949177 AGTACACCCACATCTTGCAA 57.051 45.000 0.00 0.00 0.00 4.08
442 443 3.222173 AGTACACCCACATCTTGCAAA 57.778 42.857 0.00 0.00 0.00 3.68
443 444 3.766545 AGTACACCCACATCTTGCAAAT 58.233 40.909 0.00 0.00 0.00 2.32
444 445 3.758554 AGTACACCCACATCTTGCAAATC 59.241 43.478 0.00 0.00 0.00 2.17
445 446 1.895131 ACACCCACATCTTGCAAATCC 59.105 47.619 0.00 0.00 0.00 3.01
446 447 1.135315 CACCCACATCTTGCAAATCCG 60.135 52.381 0.00 0.00 0.00 4.18
447 448 0.457035 CCCACATCTTGCAAATCCGG 59.543 55.000 0.00 0.00 0.00 5.14
448 449 1.176527 CCACATCTTGCAAATCCGGT 58.823 50.000 0.00 0.00 0.00 5.28
449 450 1.133025 CCACATCTTGCAAATCCGGTC 59.867 52.381 0.00 0.00 0.00 4.79
450 451 1.133025 CACATCTTGCAAATCCGGTCC 59.867 52.381 0.00 0.00 0.00 4.46
451 452 0.740737 CATCTTGCAAATCCGGTCCC 59.259 55.000 0.00 0.00 0.00 4.46
452 453 0.331278 ATCTTGCAAATCCGGTCCCA 59.669 50.000 0.00 0.00 0.00 4.37
453 454 0.608035 TCTTGCAAATCCGGTCCCAC 60.608 55.000 0.00 0.00 0.00 4.61
454 455 0.893270 CTTGCAAATCCGGTCCCACA 60.893 55.000 0.00 0.00 0.00 4.17
455 456 0.468214 TTGCAAATCCGGTCCCACAA 60.468 50.000 0.00 0.00 0.00 3.33
456 457 0.468214 TGCAAATCCGGTCCCACAAA 60.468 50.000 0.00 0.00 0.00 2.83
457 458 0.894835 GCAAATCCGGTCCCACAAAT 59.105 50.000 0.00 0.00 0.00 2.32
458 459 2.096248 GCAAATCCGGTCCCACAAATA 58.904 47.619 0.00 0.00 0.00 1.40
459 460 2.159296 GCAAATCCGGTCCCACAAATAC 60.159 50.000 0.00 0.00 0.00 1.89
460 461 2.425668 CAAATCCGGTCCCACAAATACC 59.574 50.000 0.00 0.00 0.00 2.73
461 462 0.549469 ATCCGGTCCCACAAATACCC 59.451 55.000 0.00 0.00 0.00 3.69
462 463 1.450669 CCGGTCCCACAAATACCCG 60.451 63.158 0.00 0.00 35.32 5.28
463 464 2.110352 CGGTCCCACAAATACCCGC 61.110 63.158 0.00 0.00 0.00 6.13
464 465 2.110352 GGTCCCACAAATACCCGCG 61.110 63.158 0.00 0.00 0.00 6.46
465 466 2.110352 GTCCCACAAATACCCGCGG 61.110 63.158 21.04 21.04 0.00 6.46
466 467 2.826738 CCCACAAATACCCGCGGG 60.827 66.667 42.17 42.17 42.03 6.13
467 468 3.514362 CCACAAATACCCGCGGGC 61.514 66.667 43.58 0.00 39.32 6.13
468 469 3.871574 CACAAATACCCGCGGGCG 61.872 66.667 43.58 27.29 39.32 6.13
469 470 4.397832 ACAAATACCCGCGGGCGT 62.398 61.111 43.58 29.32 39.32 5.68
470 471 3.871574 CAAATACCCGCGGGCGTG 61.872 66.667 43.58 29.66 39.32 5.34
497 498 3.516615 GTCAGTGGAGCTAGTGAATGTC 58.483 50.000 0.00 0.00 32.20 3.06
500 501 3.194329 CAGTGGAGCTAGTGAATGTCAGA 59.806 47.826 0.00 0.00 0.00 3.27
501 502 3.194542 AGTGGAGCTAGTGAATGTCAGAC 59.805 47.826 0.00 0.00 0.00 3.51
502 503 2.497675 TGGAGCTAGTGAATGTCAGACC 59.502 50.000 0.00 0.00 0.00 3.85
506 507 5.171339 AGCTAGTGAATGTCAGACCAATT 57.829 39.130 0.00 0.00 0.00 2.32
512 513 3.127376 TGAATGTCAGACCAATTGCATCG 59.873 43.478 0.00 0.00 0.00 3.84
560 564 5.344743 AGGACGATCAGTTACACATTCAT 57.655 39.130 0.00 0.00 0.00 2.57
577 587 4.694760 TTCATACCATGCTGAGCAGTAT 57.305 40.909 14.36 12.98 43.65 2.12
592 602 6.283694 TGAGCAGTATTGATCTGGTACATTC 58.716 40.000 5.06 0.00 42.47 2.67
595 605 7.966812 AGCAGTATTGATCTGGTACATTCATA 58.033 34.615 0.00 0.00 40.99 2.15
672 685 3.425577 AAATCGACGTAATCAGCGGTA 57.574 42.857 0.00 0.00 0.00 4.02
713 726 3.329929 AACGGAGAGAAAATAACGGCT 57.670 42.857 0.00 0.00 0.00 5.52
1411 1432 2.281070 CGCTGTCCCACAAGCTGT 60.281 61.111 0.00 0.00 0.00 4.40
1719 1749 3.257393 GCTCGTCATGAACAAGATCACT 58.743 45.455 0.00 0.00 30.82 3.41
1725 1755 7.096551 TCGTCATGAACAAGATCACTATTGAA 58.903 34.615 0.00 0.00 34.61 2.69
1739 1769 0.179032 ATTGAACAGACACCACGCCA 60.179 50.000 0.00 0.00 0.00 5.69
1887 1917 2.437359 GGCCTGCGTGCTGAGATT 60.437 61.111 0.00 0.00 0.00 2.40
1895 1925 0.321564 CGTGCTGAGATTGGGGTCAA 60.322 55.000 0.00 0.00 37.28 3.18
1920 1950 2.573462 AGCTATCTCAGTTCCCAGCAAA 59.427 45.455 0.00 0.00 0.00 3.68
1945 1975 2.109799 CTCGAAGGATGCCGGCAT 59.890 61.111 41.16 41.16 39.69 4.40
1946 1976 1.524621 CTCGAAGGATGCCGGCATT 60.525 57.895 40.56 27.53 36.70 3.56
1966 1996 3.826754 CGCCGCCTCTGCAGACTA 61.827 66.667 13.74 0.00 37.32 2.59
2012 2042 1.039785 GGAAATGGGAAGGAGCTGGC 61.040 60.000 0.00 0.00 0.00 4.85
2034 2064 3.409856 GGTGGACCGAATGATGCG 58.590 61.111 0.00 0.00 0.00 4.73
2085 2115 1.482593 CGGAGGAAGTGAGCCATTACT 59.517 52.381 0.00 0.00 0.00 2.24
2184 2214 2.887152 AGTTTGCATCCTTGAGTGGAAC 59.113 45.455 0.00 0.00 39.85 3.62
2253 2286 2.052157 GTCGCTCGTGTTAGGATATGC 58.948 52.381 0.00 0.00 0.00 3.14
2278 2311 9.869757 GCCATTATGTATAAACCTTTGTTTTCT 57.130 29.630 0.00 0.00 41.92 2.52
2289 2322 4.929211 ACCTTTGTTTTCTGTCTTTGCAAC 59.071 37.500 0.00 0.00 0.00 4.17
2303 2336 5.989777 GTCTTTGCAACTTCCTGTTAGTAGA 59.010 40.000 0.00 0.00 37.07 2.59
2304 2337 6.146347 GTCTTTGCAACTTCCTGTTAGTAGAG 59.854 42.308 0.00 0.00 37.07 2.43
2312 2348 7.133133 ACTTCCTGTTAGTAGAGGTTTCAAA 57.867 36.000 0.00 0.00 36.24 2.69
2317 2353 9.096823 TCCTGTTAGTAGAGGTTTCAAATTCTA 57.903 33.333 0.00 0.00 36.24 2.10
2330 2366 9.132521 GGTTTCAAATTCTATTGTGATGTTCAG 57.867 33.333 0.00 0.00 0.00 3.02
2338 2374 8.868522 TTCTATTGTGATGTTCAGAATCCTTT 57.131 30.769 3.47 0.00 39.26 3.11
2344 2380 6.320926 TGTGATGTTCAGAATCCTTTTGTTGA 59.679 34.615 0.00 0.00 0.00 3.18
2353 2389 2.238521 TCCTTTTGTTGACCAGATGCC 58.761 47.619 0.00 0.00 0.00 4.40
2377 2413 4.112634 TCTGGAGGCATTTTGGTAAACT 57.887 40.909 0.00 0.00 0.00 2.66
2386 2422 4.024977 GCATTTTGGTAAACTTGGTTGCTG 60.025 41.667 0.00 0.00 0.00 4.41
2391 2427 4.720046 TGGTAAACTTGGTTGCTGTGATA 58.280 39.130 0.00 0.00 0.00 2.15
2428 2464 5.360714 TGGAGGCATTTTGGTAATCTTGATC 59.639 40.000 0.00 0.00 0.00 2.92
2432 2468 4.610945 CATTTTGGTAATCTTGATCCGGC 58.389 43.478 0.00 0.00 0.00 6.13
2485 2521 0.178924 ATCTGGGGCCAACTTTTGCT 60.179 50.000 4.39 0.00 0.00 3.91
2488 2524 0.179936 TGGGGCCAACTTTTGCTTTG 59.820 50.000 4.39 0.00 0.00 2.77
2489 2525 1.165907 GGGGCCAACTTTTGCTTTGC 61.166 55.000 4.39 0.00 0.00 3.68
2491 2527 0.179048 GGCCAACTTTTGCTTTGCCT 60.179 50.000 0.00 0.00 33.28 4.75
2493 2529 1.473080 GCCAACTTTTGCTTTGCCTCA 60.473 47.619 0.00 0.00 0.00 3.86
2494 2530 2.476821 CCAACTTTTGCTTTGCCTCAG 58.523 47.619 0.00 0.00 0.00 3.35
2495 2531 2.101249 CCAACTTTTGCTTTGCCTCAGA 59.899 45.455 0.00 0.00 0.00 3.27
2498 2534 4.050852 ACTTTTGCTTTGCCTCAGAAAG 57.949 40.909 0.00 0.00 34.16 2.62
2499 2535 3.448660 ACTTTTGCTTTGCCTCAGAAAGT 59.551 39.130 0.00 0.00 33.66 2.66
2500 2536 3.441496 TTTGCTTTGCCTCAGAAAGTG 57.559 42.857 0.00 0.00 33.66 3.16
2511 2547 3.415212 CTCAGAAAGTGGCAGGAATCAA 58.585 45.455 0.00 0.00 0.00 2.57
2515 2551 2.503895 AAGTGGCAGGAATCAAGGAG 57.496 50.000 0.00 0.00 0.00 3.69
2555 2591 5.044624 AGGGAAAATGAATGATCTGACTCCA 60.045 40.000 0.00 0.00 0.00 3.86
2558 2594 6.183360 GGAAAATGAATGATCTGACTCCACAG 60.183 42.308 0.00 0.00 39.02 3.66
2559 2595 5.432680 AATGAATGATCTGACTCCACAGT 57.567 39.130 0.00 0.00 38.79 3.55
2560 2596 6.550938 AATGAATGATCTGACTCCACAGTA 57.449 37.500 0.00 0.00 38.79 2.74
2562 2598 6.358974 TGAATGATCTGACTCCACAGTAAA 57.641 37.500 0.00 0.00 38.79 2.01
2563 2599 6.166279 TGAATGATCTGACTCCACAGTAAAC 58.834 40.000 0.00 0.00 38.79 2.01
2566 2616 4.588951 TGATCTGACTCCACAGTAAACACT 59.411 41.667 0.00 0.00 38.79 3.55
2569 2619 5.357257 TCTGACTCCACAGTAAACACTTTC 58.643 41.667 0.00 0.00 38.79 2.62
2570 2620 5.092554 TGACTCCACAGTAAACACTTTCA 57.907 39.130 0.00 0.00 30.63 2.69
2573 2623 6.431543 TGACTCCACAGTAAACACTTTCAAAA 59.568 34.615 0.00 0.00 30.63 2.44
2577 2627 8.514330 TCCACAGTAAACACTTTCAAAATACT 57.486 30.769 0.00 0.00 0.00 2.12
2602 2652 4.933505 GGAATGGTCCTAGTGGTACTAC 57.066 50.000 0.19 0.19 41.24 2.73
2677 2733 2.162809 TGTGTGCTGCTATGCTTTGATG 59.837 45.455 0.00 0.00 0.00 3.07
2682 2754 2.681848 GCTGCTATGCTTTGATGAGTGT 59.318 45.455 0.00 0.00 0.00 3.55
2716 2788 1.219124 GATGCTCCTGTCGCCTTCA 59.781 57.895 0.00 0.00 0.00 3.02
2719 2791 1.522580 GCTCCTGTCGCCTTCATCC 60.523 63.158 0.00 0.00 0.00 3.51
2740 2813 3.057596 CCGCTTGCTGGTAAAATCTGAAA 60.058 43.478 0.00 0.00 0.00 2.69
2838 2911 2.512515 GTCTGACATGGGCGGCTC 60.513 66.667 9.56 0.00 0.00 4.70
2848 2921 1.210931 GGGCGGCTCGTTTAAAACC 59.789 57.895 9.56 0.00 0.00 3.27
2850 2923 0.167470 GGCGGCTCGTTTAAAACCTC 59.833 55.000 0.00 0.00 0.00 3.85
2852 2925 1.534163 GCGGCTCGTTTAAAACCTCTT 59.466 47.619 0.00 0.00 0.00 2.85
2860 2933 8.724229 GGCTCGTTTAAAACCTCTTATTTTAGA 58.276 33.333 0.00 0.00 34.04 2.10
2900 2973 3.334583 TGGTGTGCTAGAATCCTGAAC 57.665 47.619 0.00 0.00 0.00 3.18
2910 2983 6.039616 GCTAGAATCCTGAACTCACTACTTG 58.960 44.000 0.00 0.00 0.00 3.16
2911 2984 6.127591 GCTAGAATCCTGAACTCACTACTTGA 60.128 42.308 0.00 0.00 0.00 3.02
2912 2985 6.672266 AGAATCCTGAACTCACTACTTGAA 57.328 37.500 0.00 0.00 32.21 2.69
2913 2986 7.067496 AGAATCCTGAACTCACTACTTGAAA 57.933 36.000 0.00 0.00 32.21 2.69
2947 3025 5.503634 TCCATCACTCTTTCATCCAGAAA 57.496 39.130 0.00 0.00 43.71 2.52
2958 3036 6.486253 TTTCATCCAGAAAGAAGATTGACG 57.514 37.500 0.00 0.00 41.17 4.35
2978 3058 3.497640 ACGGTAGATATGCACTCGTAGAC 59.502 47.826 0.00 0.00 0.00 2.59
2984 3064 6.398234 AGATATGCACTCGTAGACTCATTT 57.602 37.500 0.00 0.00 0.00 2.32
2987 3067 2.288763 TGCACTCGTAGACTCATTTGCA 60.289 45.455 0.00 0.00 36.42 4.08
2988 3068 2.346847 GCACTCGTAGACTCATTTGCAG 59.653 50.000 0.00 0.00 0.00 4.41
3043 3123 0.537143 TGTCAGCCAGCGAACCAAAT 60.537 50.000 0.00 0.00 0.00 2.32
3044 3124 0.109597 GTCAGCCAGCGAACCAAATG 60.110 55.000 0.00 0.00 0.00 2.32
3054 3134 0.240945 GAACCAAATGGACACCGCTG 59.759 55.000 6.42 0.00 38.94 5.18
3069 3149 2.023673 CCGCTGGCCAGATTCAAATAA 58.976 47.619 37.21 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.884257 TCGACGCGGCCCTATTGC 62.884 66.667 12.47 0.00 0.00 3.56
28 29 2.960129 GTCGACGCGGCCCTATTG 60.960 66.667 12.47 0.00 0.00 1.90
29 30 2.901051 CTTGTCGACGCGGCCCTATT 62.901 60.000 12.47 0.00 0.00 1.73
30 31 3.426117 CTTGTCGACGCGGCCCTAT 62.426 63.158 12.47 0.00 0.00 2.57
31 32 4.124351 CTTGTCGACGCGGCCCTA 62.124 66.667 12.47 0.00 0.00 3.53
33 34 4.424566 TACTTGTCGACGCGGCCC 62.425 66.667 12.47 0.00 0.00 5.80
34 35 2.879462 CTACTTGTCGACGCGGCC 60.879 66.667 12.47 0.00 0.00 6.13
35 36 3.542742 GCTACTTGTCGACGCGGC 61.543 66.667 12.47 6.41 0.00 6.53
36 37 2.152699 CAGCTACTTGTCGACGCGG 61.153 63.158 12.47 4.62 0.00 6.46
37 38 2.152699 CCAGCTACTTGTCGACGCG 61.153 63.158 11.62 3.53 0.00 6.01
38 39 2.445438 GCCAGCTACTTGTCGACGC 61.445 63.158 11.62 7.69 0.00 5.19
39 40 0.458543 ATGCCAGCTACTTGTCGACG 60.459 55.000 11.62 0.00 0.00 5.12
40 41 1.281899 GATGCCAGCTACTTGTCGAC 58.718 55.000 9.11 9.11 0.00 4.20
41 42 0.179137 CGATGCCAGCTACTTGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
42 43 0.458543 ACGATGCCAGCTACTTGTCG 60.459 55.000 0.00 0.00 0.00 4.35
43 44 1.281899 GACGATGCCAGCTACTTGTC 58.718 55.000 0.00 0.00 0.00 3.18
44 45 0.458543 CGACGATGCCAGCTACTTGT 60.459 55.000 0.00 0.00 0.00 3.16
45 46 0.179137 TCGACGATGCCAGCTACTTG 60.179 55.000 0.00 0.00 0.00 3.16
46 47 0.179134 GTCGACGATGCCAGCTACTT 60.179 55.000 0.00 0.00 0.00 2.24
47 48 1.433879 GTCGACGATGCCAGCTACT 59.566 57.895 0.00 0.00 0.00 2.57
48 49 1.589196 GGTCGACGATGCCAGCTAC 60.589 63.158 9.92 0.00 0.00 3.58
49 50 2.004808 CTGGTCGACGATGCCAGCTA 62.005 60.000 18.34 0.00 42.54 3.32
50 51 3.362399 CTGGTCGACGATGCCAGCT 62.362 63.158 18.34 0.00 42.54 4.24
51 52 2.887568 CTGGTCGACGATGCCAGC 60.888 66.667 18.34 0.00 42.54 4.85
53 54 4.794439 CGCTGGTCGACGATGCCA 62.794 66.667 9.92 3.72 41.67 4.92
84 85 3.284449 AAGTCCAACAACGGCGGC 61.284 61.111 13.24 0.00 0.00 6.53
85 86 2.637025 CAAGTCCAACAACGGCGG 59.363 61.111 13.24 0.00 0.00 6.13
86 87 2.184167 ACCAAGTCCAACAACGGCG 61.184 57.895 4.80 4.80 0.00 6.46
87 88 1.358759 CACCAAGTCCAACAACGGC 59.641 57.895 0.00 0.00 0.00 5.68
88 89 2.029743 CCACCAAGTCCAACAACGG 58.970 57.895 0.00 0.00 0.00 4.44
89 90 1.358759 GCCACCAAGTCCAACAACG 59.641 57.895 0.00 0.00 0.00 4.10
90 91 1.098712 TCGCCACCAAGTCCAACAAC 61.099 55.000 0.00 0.00 0.00 3.32
91 92 0.817634 CTCGCCACCAAGTCCAACAA 60.818 55.000 0.00 0.00 0.00 2.83
92 93 1.227823 CTCGCCACCAAGTCCAACA 60.228 57.895 0.00 0.00 0.00 3.33
93 94 1.966451 CCTCGCCACCAAGTCCAAC 60.966 63.158 0.00 0.00 0.00 3.77
94 95 2.111999 CTCCTCGCCACCAAGTCCAA 62.112 60.000 0.00 0.00 0.00 3.53
95 96 2.525629 TCCTCGCCACCAAGTCCA 60.526 61.111 0.00 0.00 0.00 4.02
96 97 2.266055 CTCCTCGCCACCAAGTCC 59.734 66.667 0.00 0.00 0.00 3.85
97 98 2.435059 GCTCCTCGCCACCAAGTC 60.435 66.667 0.00 0.00 0.00 3.01
98 99 4.379243 CGCTCCTCGCCACCAAGT 62.379 66.667 0.00 0.00 34.21 3.16
144 145 4.154347 GAGGGAGCTGCTGGTCGG 62.154 72.222 7.01 0.00 41.26 4.79
145 146 2.849120 CTTGAGGGAGCTGCTGGTCG 62.849 65.000 7.01 0.00 41.26 4.79
146 147 1.078567 CTTGAGGGAGCTGCTGGTC 60.079 63.158 7.01 13.79 39.76 4.02
147 148 2.600729 CCTTGAGGGAGCTGCTGGT 61.601 63.158 7.01 0.00 37.23 4.00
148 149 2.271497 CCTTGAGGGAGCTGCTGG 59.729 66.667 7.01 0.00 37.23 4.85
158 159 4.043435 CCCCTAATCCTTAATCCCTTGAGG 59.957 50.000 0.00 0.00 39.05 3.86
159 160 4.913968 TCCCCTAATCCTTAATCCCTTGAG 59.086 45.833 0.00 0.00 0.00 3.02
160 161 4.913968 CTCCCCTAATCCTTAATCCCTTGA 59.086 45.833 0.00 0.00 0.00 3.02
161 162 4.913968 TCTCCCCTAATCCTTAATCCCTTG 59.086 45.833 0.00 0.00 0.00 3.61
162 163 5.102169 TCTCTCCCCTAATCCTTAATCCCTT 60.102 44.000 0.00 0.00 0.00 3.95
163 164 4.427406 TCTCTCCCCTAATCCTTAATCCCT 59.573 45.833 0.00 0.00 0.00 4.20
164 165 4.764491 TCTCTCCCCTAATCCTTAATCCC 58.236 47.826 0.00 0.00 0.00 3.85
165 166 5.656420 TCTCTCTCCCCTAATCCTTAATCC 58.344 45.833 0.00 0.00 0.00 3.01
166 167 5.719563 CCTCTCTCTCCCCTAATCCTTAATC 59.280 48.000 0.00 0.00 0.00 1.75
167 168 5.461915 CCCTCTCTCTCCCCTAATCCTTAAT 60.462 48.000 0.00 0.00 0.00 1.40
168 169 4.140663 CCCTCTCTCTCCCCTAATCCTTAA 60.141 50.000 0.00 0.00 0.00 1.85
169 170 3.403051 CCCTCTCTCTCCCCTAATCCTTA 59.597 52.174 0.00 0.00 0.00 2.69
170 171 2.181196 CCCTCTCTCTCCCCTAATCCTT 59.819 54.545 0.00 0.00 0.00 3.36
171 172 1.792651 CCCTCTCTCTCCCCTAATCCT 59.207 57.143 0.00 0.00 0.00 3.24
172 173 1.203250 CCCCTCTCTCTCCCCTAATCC 60.203 61.905 0.00 0.00 0.00 3.01
173 174 1.203250 CCCCCTCTCTCTCCCCTAATC 60.203 61.905 0.00 0.00 0.00 1.75
174 175 0.871024 CCCCCTCTCTCTCCCCTAAT 59.129 60.000 0.00 0.00 0.00 1.73
175 176 2.344113 CCCCCTCTCTCTCCCCTAA 58.656 63.158 0.00 0.00 0.00 2.69
176 177 4.125590 CCCCCTCTCTCTCCCCTA 57.874 66.667 0.00 0.00 0.00 3.53
190 191 3.716872 TCTCAAGTTAATCCATCTCCCCC 59.283 47.826 0.00 0.00 0.00 5.40
191 192 4.164221 TGTCTCAAGTTAATCCATCTCCCC 59.836 45.833 0.00 0.00 0.00 4.81
192 193 5.119694 GTGTCTCAAGTTAATCCATCTCCC 58.880 45.833 0.00 0.00 0.00 4.30
193 194 4.806247 CGTGTCTCAAGTTAATCCATCTCC 59.194 45.833 0.00 0.00 0.00 3.71
194 195 4.268884 GCGTGTCTCAAGTTAATCCATCTC 59.731 45.833 0.00 0.00 0.00 2.75
195 196 4.184629 GCGTGTCTCAAGTTAATCCATCT 58.815 43.478 0.00 0.00 0.00 2.90
196 197 3.000322 CGCGTGTCTCAAGTTAATCCATC 60.000 47.826 0.00 0.00 0.00 3.51
197 198 2.930040 CGCGTGTCTCAAGTTAATCCAT 59.070 45.455 0.00 0.00 0.00 3.41
198 199 2.288579 ACGCGTGTCTCAAGTTAATCCA 60.289 45.455 12.93 0.00 0.00 3.41
199 200 2.334838 ACGCGTGTCTCAAGTTAATCC 58.665 47.619 12.93 0.00 0.00 3.01
200 201 3.619751 GACGCGTGTCTCAAGTTAATC 57.380 47.619 20.70 0.00 42.08 1.75
211 212 1.192793 GCTCTATGAAGACGCGTGTC 58.807 55.000 20.70 21.32 45.86 3.67
212 213 0.179134 GGCTCTATGAAGACGCGTGT 60.179 55.000 20.70 11.10 30.89 4.49
213 214 0.179137 TGGCTCTATGAAGACGCGTG 60.179 55.000 20.70 0.00 30.89 5.34
214 215 0.179134 GTGGCTCTATGAAGACGCGT 60.179 55.000 13.85 13.85 30.89 6.01
215 216 0.872021 GGTGGCTCTATGAAGACGCG 60.872 60.000 3.53 3.53 35.53 6.01
216 217 0.530870 GGGTGGCTCTATGAAGACGC 60.531 60.000 0.00 0.00 33.84 5.19
217 218 0.824109 TGGGTGGCTCTATGAAGACG 59.176 55.000 0.00 0.00 0.00 4.18
218 219 1.471676 CGTGGGTGGCTCTATGAAGAC 60.472 57.143 0.00 0.00 0.00 3.01
219 220 0.824109 CGTGGGTGGCTCTATGAAGA 59.176 55.000 0.00 0.00 0.00 2.87
220 221 0.537188 ACGTGGGTGGCTCTATGAAG 59.463 55.000 0.00 0.00 0.00 3.02
221 222 0.249120 CACGTGGGTGGCTCTATGAA 59.751 55.000 7.95 0.00 40.58 2.57
222 223 1.897423 CACGTGGGTGGCTCTATGA 59.103 57.895 7.95 0.00 40.58 2.15
223 224 1.815421 GCACGTGGGTGGCTCTATG 60.815 63.158 18.88 0.00 44.54 2.23
224 225 2.584608 GCACGTGGGTGGCTCTAT 59.415 61.111 18.88 0.00 44.54 1.98
225 226 4.063967 CGCACGTGGGTGGCTCTA 62.064 66.667 23.30 0.00 44.54 2.43
236 237 4.742201 ATGCTTCGAGGCGCACGT 62.742 61.111 21.39 1.00 39.21 4.49
237 238 3.918220 GATGCTTCGAGGCGCACG 61.918 66.667 15.28 15.03 39.21 5.34
247 248 4.537433 AGGCCCGAGCGATGCTTC 62.537 66.667 0.00 0.00 39.88 3.86
248 249 4.845580 CAGGCCCGAGCGATGCTT 62.846 66.667 0.00 0.00 39.88 3.91
260 261 3.717294 TTTCCCGAGAGCCAGGCC 61.717 66.667 8.22 0.00 0.00 5.19
261 262 2.436824 GTTTCCCGAGAGCCAGGC 60.437 66.667 1.84 1.84 0.00 4.85
262 263 1.078848 CAGTTTCCCGAGAGCCAGG 60.079 63.158 0.00 0.00 0.00 4.45
263 264 1.743252 GCAGTTTCCCGAGAGCCAG 60.743 63.158 0.00 0.00 0.00 4.85
264 265 2.347490 GCAGTTTCCCGAGAGCCA 59.653 61.111 0.00 0.00 0.00 4.75
265 266 2.436824 GGCAGTTTCCCGAGAGCC 60.437 66.667 0.00 0.00 34.71 4.70
271 272 2.461110 CCGAATCGGCAGTTTCCCG 61.461 63.158 9.39 0.00 46.88 5.14
272 273 3.497879 CCGAATCGGCAGTTTCCC 58.502 61.111 9.39 0.00 41.17 3.97
292 293 2.613506 CGCACCCCTCGTTGGAAAC 61.614 63.158 0.00 0.00 45.31 2.78
293 294 2.281208 CGCACCCCTCGTTGGAAA 60.281 61.111 0.00 0.00 38.35 3.13
294 295 4.323477 CCGCACCCCTCGTTGGAA 62.323 66.667 0.00 0.00 38.35 3.53
304 305 4.643387 ACTGTTGAGCCCGCACCC 62.643 66.667 0.00 0.00 0.00 4.61
305 306 2.725203 TACACTGTTGAGCCCGCACC 62.725 60.000 0.00 0.00 0.00 5.01
306 307 0.673644 ATACACTGTTGAGCCCGCAC 60.674 55.000 0.00 0.00 0.00 5.34
307 308 0.673333 CATACACTGTTGAGCCCGCA 60.673 55.000 0.00 0.00 0.00 5.69
308 309 1.982073 GCATACACTGTTGAGCCCGC 61.982 60.000 0.00 0.00 0.00 6.13
309 310 1.695893 CGCATACACTGTTGAGCCCG 61.696 60.000 0.00 0.00 0.00 6.13
310 311 0.391130 TCGCATACACTGTTGAGCCC 60.391 55.000 0.00 0.00 0.00 5.19
311 312 1.002366 CTCGCATACACTGTTGAGCC 58.998 55.000 0.00 0.00 0.00 4.70
312 313 1.002366 CCTCGCATACACTGTTGAGC 58.998 55.000 0.00 0.00 31.80 4.26
313 314 2.654749 TCCTCGCATACACTGTTGAG 57.345 50.000 0.00 0.00 32.50 3.02
314 315 2.683968 GTTCCTCGCATACACTGTTGA 58.316 47.619 0.00 0.00 0.00 3.18
315 316 1.390123 CGTTCCTCGCATACACTGTTG 59.610 52.381 0.00 0.00 0.00 3.33
316 317 1.271379 TCGTTCCTCGCATACACTGTT 59.729 47.619 0.00 0.00 39.67 3.16
317 318 0.885879 TCGTTCCTCGCATACACTGT 59.114 50.000 0.00 0.00 39.67 3.55
318 319 1.990799 TTCGTTCCTCGCATACACTG 58.009 50.000 0.00 0.00 39.67 3.66
319 320 2.288579 TGTTTCGTTCCTCGCATACACT 60.289 45.455 0.00 0.00 39.67 3.55
320 321 2.063266 TGTTTCGTTCCTCGCATACAC 58.937 47.619 0.00 0.00 39.67 2.90
321 322 2.442212 TGTTTCGTTCCTCGCATACA 57.558 45.000 0.00 0.00 39.67 2.29
322 323 2.159747 GGTTGTTTCGTTCCTCGCATAC 60.160 50.000 0.00 0.00 39.67 2.39
323 324 2.070783 GGTTGTTTCGTTCCTCGCATA 58.929 47.619 0.00 0.00 39.67 3.14
324 325 0.872388 GGTTGTTTCGTTCCTCGCAT 59.128 50.000 0.00 0.00 39.67 4.73
325 326 1.492319 CGGTTGTTTCGTTCCTCGCA 61.492 55.000 0.00 0.00 39.67 5.10
326 327 1.203313 CGGTTGTTTCGTTCCTCGC 59.797 57.895 0.00 0.00 39.67 5.03
327 328 0.782384 CTCGGTTGTTTCGTTCCTCG 59.218 55.000 0.00 0.00 41.41 4.63
328 329 1.145803 CCTCGGTTGTTTCGTTCCTC 58.854 55.000 0.00 0.00 0.00 3.71
329 330 0.466963 ACCTCGGTTGTTTCGTTCCT 59.533 50.000 0.00 0.00 0.00 3.36
330 331 1.262417 GAACCTCGGTTGTTTCGTTCC 59.738 52.381 5.98 0.00 38.60 3.62
331 332 1.935199 TGAACCTCGGTTGTTTCGTTC 59.065 47.619 5.98 0.00 38.60 3.95
332 333 2.027003 TGAACCTCGGTTGTTTCGTT 57.973 45.000 5.98 0.00 38.60 3.85
333 334 2.027003 TTGAACCTCGGTTGTTTCGT 57.973 45.000 5.98 0.00 38.60 3.85
334 335 3.408288 TTTTGAACCTCGGTTGTTTCG 57.592 42.857 5.98 0.00 38.60 3.46
335 336 4.989044 TCTTTTTGAACCTCGGTTGTTTC 58.011 39.130 5.98 0.00 38.60 2.78
336 337 5.592104 ATCTTTTTGAACCTCGGTTGTTT 57.408 34.783 5.98 0.00 38.60 2.83
337 338 5.826208 AGTATCTTTTTGAACCTCGGTTGTT 59.174 36.000 5.98 0.00 38.60 2.83
338 339 5.238650 CAGTATCTTTTTGAACCTCGGTTGT 59.761 40.000 5.98 0.00 38.60 3.32
339 340 5.689819 CAGTATCTTTTTGAACCTCGGTTG 58.310 41.667 5.98 0.00 38.60 3.77
340 341 4.215613 GCAGTATCTTTTTGAACCTCGGTT 59.784 41.667 0.00 0.00 41.54 4.44
341 342 3.751698 GCAGTATCTTTTTGAACCTCGGT 59.248 43.478 0.00 0.00 0.00 4.69
342 343 3.751175 TGCAGTATCTTTTTGAACCTCGG 59.249 43.478 0.00 0.00 0.00 4.63
343 344 4.378459 GGTGCAGTATCTTTTTGAACCTCG 60.378 45.833 0.00 0.00 37.52 4.63
344 345 4.378459 CGGTGCAGTATCTTTTTGAACCTC 60.378 45.833 0.00 0.00 38.22 3.85
345 346 3.502211 CGGTGCAGTATCTTTTTGAACCT 59.498 43.478 0.00 0.00 38.22 3.50
346 347 3.821841 CGGTGCAGTATCTTTTTGAACC 58.178 45.455 0.00 0.00 37.20 3.62
347 348 3.234386 GCGGTGCAGTATCTTTTTGAAC 58.766 45.455 0.00 0.00 0.00 3.18
348 349 2.881513 TGCGGTGCAGTATCTTTTTGAA 59.118 40.909 0.00 0.00 33.32 2.69
349 350 2.225491 GTGCGGTGCAGTATCTTTTTGA 59.775 45.455 0.00 0.00 40.08 2.69
350 351 2.031245 TGTGCGGTGCAGTATCTTTTTG 60.031 45.455 0.00 0.00 40.08 2.44
351 352 2.031157 GTGTGCGGTGCAGTATCTTTTT 60.031 45.455 0.00 0.00 40.08 1.94
352 353 1.535462 GTGTGCGGTGCAGTATCTTTT 59.465 47.619 0.00 0.00 40.08 2.27
353 354 1.156736 GTGTGCGGTGCAGTATCTTT 58.843 50.000 0.00 0.00 40.08 2.52
354 355 1.014044 CGTGTGCGGTGCAGTATCTT 61.014 55.000 0.00 0.00 40.08 2.40
355 356 1.446099 CGTGTGCGGTGCAGTATCT 60.446 57.895 0.00 0.00 40.08 1.98
356 357 3.081133 CGTGTGCGGTGCAGTATC 58.919 61.111 0.00 0.00 40.08 2.24
357 358 3.118454 GCGTGTGCGGTGCAGTAT 61.118 61.111 0.00 0.00 40.08 2.12
374 375 1.746615 CACATCGAGCCCAACCAGG 60.747 63.158 0.00 0.00 37.03 4.45
375 376 1.746615 CCACATCGAGCCCAACCAG 60.747 63.158 0.00 0.00 0.00 4.00
376 377 2.350895 CCACATCGAGCCCAACCA 59.649 61.111 0.00 0.00 0.00 3.67
377 378 2.438434 CCCACATCGAGCCCAACC 60.438 66.667 0.00 0.00 0.00 3.77
378 379 3.134127 GCCCACATCGAGCCCAAC 61.134 66.667 0.00 0.00 0.00 3.77
379 380 3.203086 TTGCCCACATCGAGCCCAA 62.203 57.895 0.00 0.00 0.00 4.12
380 381 3.645660 TTGCCCACATCGAGCCCA 61.646 61.111 0.00 0.00 0.00 5.36
381 382 3.134127 GTTGCCCACATCGAGCCC 61.134 66.667 0.00 0.00 0.00 5.19
382 383 3.134127 GGTTGCCCACATCGAGCC 61.134 66.667 0.00 0.00 0.00 4.70
383 384 1.523154 TTTGGTTGCCCACATCGAGC 61.523 55.000 0.00 0.00 41.67 5.03
384 385 0.240945 GTTTGGTTGCCCACATCGAG 59.759 55.000 0.00 0.00 41.67 4.04
385 386 0.179004 AGTTTGGTTGCCCACATCGA 60.179 50.000 0.00 0.00 41.67 3.59
386 387 0.240945 GAGTTTGGTTGCCCACATCG 59.759 55.000 0.00 0.00 41.67 3.84
387 388 0.240945 CGAGTTTGGTTGCCCACATC 59.759 55.000 0.00 0.00 41.67 3.06
388 389 0.467290 ACGAGTTTGGTTGCCCACAT 60.467 50.000 0.00 0.00 41.67 3.21
389 390 1.077357 ACGAGTTTGGTTGCCCACA 60.077 52.632 0.00 0.00 41.67 4.17
390 391 1.652563 GACGAGTTTGGTTGCCCAC 59.347 57.895 0.00 0.00 41.67 4.61
391 392 1.527380 GGACGAGTTTGGTTGCCCA 60.527 57.895 0.00 0.00 39.65 5.36
392 393 0.893727 ATGGACGAGTTTGGTTGCCC 60.894 55.000 0.00 0.00 0.00 5.36
393 394 1.737793 CTATGGACGAGTTTGGTTGCC 59.262 52.381 0.00 0.00 0.00 4.52
394 395 2.423577 ACTATGGACGAGTTTGGTTGC 58.576 47.619 0.00 0.00 0.00 4.17
395 396 3.617263 GCTACTATGGACGAGTTTGGTTG 59.383 47.826 0.00 0.00 0.00 3.77
396 397 3.369157 GGCTACTATGGACGAGTTTGGTT 60.369 47.826 0.00 0.00 0.00 3.67
397 398 2.167900 GGCTACTATGGACGAGTTTGGT 59.832 50.000 0.00 0.00 0.00 3.67
398 399 2.483188 GGGCTACTATGGACGAGTTTGG 60.483 54.545 0.00 0.00 0.00 3.28
399 400 2.167693 TGGGCTACTATGGACGAGTTTG 59.832 50.000 0.00 0.00 0.00 2.93
400 401 2.463752 TGGGCTACTATGGACGAGTTT 58.536 47.619 0.00 0.00 0.00 2.66
401 402 2.154567 TGGGCTACTATGGACGAGTT 57.845 50.000 0.00 0.00 0.00 3.01
402 403 2.383442 ATGGGCTACTATGGACGAGT 57.617 50.000 0.00 0.00 0.00 4.18
403 404 3.422796 ACTATGGGCTACTATGGACGAG 58.577 50.000 0.00 0.00 0.00 4.18
404 405 3.520691 ACTATGGGCTACTATGGACGA 57.479 47.619 0.00 0.00 0.00 4.20
405 406 4.077108 TGTACTATGGGCTACTATGGACG 58.923 47.826 0.00 0.00 0.00 4.79
406 407 4.220163 GGTGTACTATGGGCTACTATGGAC 59.780 50.000 0.00 0.00 0.00 4.02
407 408 4.413760 GGTGTACTATGGGCTACTATGGA 58.586 47.826 0.00 0.00 0.00 3.41
408 409 3.514309 GGGTGTACTATGGGCTACTATGG 59.486 52.174 0.00 0.00 0.00 2.74
409 410 4.021368 GTGGGTGTACTATGGGCTACTATG 60.021 50.000 0.00 0.00 0.00 2.23
410 411 4.158015 GTGGGTGTACTATGGGCTACTAT 58.842 47.826 0.00 0.00 0.00 2.12
411 412 3.052717 TGTGGGTGTACTATGGGCTACTA 60.053 47.826 0.00 0.00 0.00 1.82
412 413 2.292653 TGTGGGTGTACTATGGGCTACT 60.293 50.000 0.00 0.00 0.00 2.57
413 414 2.112998 TGTGGGTGTACTATGGGCTAC 58.887 52.381 0.00 0.00 0.00 3.58
414 415 2.553911 TGTGGGTGTACTATGGGCTA 57.446 50.000 0.00 0.00 0.00 3.93
415 416 1.768870 GATGTGGGTGTACTATGGGCT 59.231 52.381 0.00 0.00 0.00 5.19
416 417 1.768870 AGATGTGGGTGTACTATGGGC 59.231 52.381 0.00 0.00 0.00 5.36
417 418 3.808728 CAAGATGTGGGTGTACTATGGG 58.191 50.000 0.00 0.00 0.00 4.00
418 419 3.206150 GCAAGATGTGGGTGTACTATGG 58.794 50.000 0.00 0.00 0.00 2.74
419 420 3.872696 TGCAAGATGTGGGTGTACTATG 58.127 45.455 0.00 0.00 0.00 2.23
420 421 4.568072 TTGCAAGATGTGGGTGTACTAT 57.432 40.909 0.00 0.00 0.00 2.12
421 422 4.359434 TTTGCAAGATGTGGGTGTACTA 57.641 40.909 0.00 0.00 0.00 1.82
422 423 2.949177 TTGCAAGATGTGGGTGTACT 57.051 45.000 0.00 0.00 0.00 2.73
423 424 3.119495 GGATTTGCAAGATGTGGGTGTAC 60.119 47.826 0.00 0.00 0.00 2.90
424 425 3.088532 GGATTTGCAAGATGTGGGTGTA 58.911 45.455 0.00 0.00 0.00 2.90
425 426 1.895131 GGATTTGCAAGATGTGGGTGT 59.105 47.619 0.00 0.00 0.00 4.16
426 427 1.135315 CGGATTTGCAAGATGTGGGTG 60.135 52.381 0.00 0.00 0.00 4.61
427 428 1.176527 CGGATTTGCAAGATGTGGGT 58.823 50.000 0.00 0.00 0.00 4.51
428 429 0.457035 CCGGATTTGCAAGATGTGGG 59.543 55.000 0.00 0.00 0.00 4.61
429 430 1.133025 GACCGGATTTGCAAGATGTGG 59.867 52.381 9.46 2.30 0.00 4.17
430 431 1.133025 GGACCGGATTTGCAAGATGTG 59.867 52.381 9.46 0.00 0.00 3.21
431 432 1.463674 GGACCGGATTTGCAAGATGT 58.536 50.000 9.46 0.00 0.00 3.06
432 433 0.740737 GGGACCGGATTTGCAAGATG 59.259 55.000 9.46 0.00 0.00 2.90
433 434 0.331278 TGGGACCGGATTTGCAAGAT 59.669 50.000 9.46 0.00 0.00 2.40
434 435 0.608035 GTGGGACCGGATTTGCAAGA 60.608 55.000 9.46 0.00 0.00 3.02
435 436 0.893270 TGTGGGACCGGATTTGCAAG 60.893 55.000 9.46 0.00 0.00 4.01
436 437 0.468214 TTGTGGGACCGGATTTGCAA 60.468 50.000 9.46 4.87 0.00 4.08
437 438 0.468214 TTTGTGGGACCGGATTTGCA 60.468 50.000 9.46 0.00 0.00 4.08
438 439 0.894835 ATTTGTGGGACCGGATTTGC 59.105 50.000 9.46 0.00 0.00 3.68
439 440 2.425668 GGTATTTGTGGGACCGGATTTG 59.574 50.000 9.46 0.00 0.00 2.32
440 441 2.622190 GGGTATTTGTGGGACCGGATTT 60.622 50.000 9.46 0.00 0.00 2.17
441 442 1.064240 GGGTATTTGTGGGACCGGATT 60.064 52.381 9.46 0.00 0.00 3.01
442 443 0.549469 GGGTATTTGTGGGACCGGAT 59.451 55.000 9.46 0.00 0.00 4.18
443 444 1.901654 CGGGTATTTGTGGGACCGGA 61.902 60.000 9.46 0.00 37.80 5.14
444 445 1.450669 CGGGTATTTGTGGGACCGG 60.451 63.158 0.00 0.00 37.80 5.28
445 446 2.110352 GCGGGTATTTGTGGGACCG 61.110 63.158 0.00 0.00 43.81 4.79
446 447 2.110352 CGCGGGTATTTGTGGGACC 61.110 63.158 0.00 0.00 0.00 4.46
447 448 2.110352 CCGCGGGTATTTGTGGGAC 61.110 63.158 20.10 0.00 32.05 4.46
448 449 2.269562 CCGCGGGTATTTGTGGGA 59.730 61.111 20.10 0.00 32.05 4.37
450 451 3.514362 GCCCGCGGGTATTTGTGG 61.514 66.667 42.53 16.82 37.65 4.17
451 452 3.871574 CGCCCGCGGGTATTTGTG 61.872 66.667 42.53 20.32 37.65 3.33
452 453 4.397832 ACGCCCGCGGGTATTTGT 62.398 61.111 42.53 28.90 44.69 2.83
453 454 3.871574 CACGCCCGCGGGTATTTG 61.872 66.667 42.53 28.95 44.69 2.32
467 468 3.596066 CTCCACTGACCTGGGCACG 62.596 68.421 0.00 0.00 31.41 5.34
468 469 2.348998 CTCCACTGACCTGGGCAC 59.651 66.667 0.00 0.00 31.41 5.01
469 470 2.746947 TAGCTCCACTGACCTGGGCA 62.747 60.000 0.34 0.34 32.68 5.36
470 471 1.965754 CTAGCTCCACTGACCTGGGC 61.966 65.000 0.00 0.00 31.41 5.36
471 472 0.616111 ACTAGCTCCACTGACCTGGG 60.616 60.000 0.00 0.00 31.41 4.45
472 473 0.534412 CACTAGCTCCACTGACCTGG 59.466 60.000 0.00 0.00 0.00 4.45
473 474 1.550327 TCACTAGCTCCACTGACCTG 58.450 55.000 0.00 0.00 0.00 4.00
474 475 2.310779 TTCACTAGCTCCACTGACCT 57.689 50.000 0.00 0.00 0.00 3.85
475 476 2.234908 ACATTCACTAGCTCCACTGACC 59.765 50.000 0.00 0.00 0.00 4.02
476 477 3.056536 TGACATTCACTAGCTCCACTGAC 60.057 47.826 0.00 0.00 0.00 3.51
477 478 3.165071 TGACATTCACTAGCTCCACTGA 58.835 45.455 0.00 0.00 0.00 3.41
478 479 3.194329 TCTGACATTCACTAGCTCCACTG 59.806 47.826 0.00 0.00 0.00 3.66
479 480 3.194542 GTCTGACATTCACTAGCTCCACT 59.805 47.826 2.24 0.00 0.00 4.00
480 481 3.516615 GTCTGACATTCACTAGCTCCAC 58.483 50.000 2.24 0.00 0.00 4.02
481 482 2.497675 GGTCTGACATTCACTAGCTCCA 59.502 50.000 10.38 0.00 0.00 3.86
482 483 2.497675 TGGTCTGACATTCACTAGCTCC 59.502 50.000 10.38 0.00 0.00 4.70
491 492 3.688272 CGATGCAATTGGTCTGACATTC 58.312 45.455 10.38 0.00 0.00 2.67
497 498 1.089112 TCTGCGATGCAATTGGTCTG 58.911 50.000 7.72 0.00 38.41 3.51
500 501 0.813184 CCTTCTGCGATGCAATTGGT 59.187 50.000 7.72 0.00 38.41 3.67
501 502 0.813184 ACCTTCTGCGATGCAATTGG 59.187 50.000 7.72 0.00 38.41 3.16
502 503 2.256174 CAACCTTCTGCGATGCAATTG 58.744 47.619 0.00 0.00 38.41 2.32
506 507 0.035152 ATCCAACCTTCTGCGATGCA 60.035 50.000 0.00 0.00 36.92 3.96
512 513 1.004745 TCCTTGGATCCAACCTTCTGC 59.995 52.381 23.63 0.00 0.00 4.26
560 564 4.346127 AGATCAATACTGCTCAGCATGGTA 59.654 41.667 0.00 0.00 38.13 3.25
577 587 7.936496 TTTTGCTATGAATGTACCAGATCAA 57.064 32.000 0.00 0.00 0.00 2.57
603 613 0.404426 GTGGAGCCAGTACCCCTTTT 59.596 55.000 0.00 0.00 0.00 2.27
607 617 3.782443 CGGTGGAGCCAGTACCCC 61.782 72.222 0.00 0.00 36.97 4.95
608 618 1.623542 AATCGGTGGAGCCAGTACCC 61.624 60.000 0.00 0.00 36.97 3.69
609 619 0.252197 AAATCGGTGGAGCCAGTACC 59.748 55.000 0.00 0.00 36.97 3.34
713 726 3.319198 GGGTTGGAGCTGGGACGA 61.319 66.667 0.00 0.00 0.00 4.20
924 938 2.113986 GCGATTCAGGGATGGGGG 59.886 66.667 0.00 0.00 0.00 5.40
934 948 3.138625 GGGGATCTCCGCGATTCA 58.861 61.111 8.23 0.00 39.23 2.57
1071 1086 3.706373 GAGAGGAACGGCAGCCCA 61.706 66.667 5.63 0.00 0.00 5.36
1111 1126 2.754658 GAAGCGGAGGTCCTCGGA 60.755 66.667 26.31 0.00 37.06 4.55
1170 1185 3.384532 TCGTTGGGGCGGTAGGAC 61.385 66.667 0.00 0.00 0.00 3.85
1397 1418 2.137528 TCGGACAGCTTGTGGGACA 61.138 57.895 0.00 0.00 0.00 4.02
1399 1420 2.741092 GTCGGACAGCTTGTGGGA 59.259 61.111 2.62 0.00 0.00 4.37
1411 1432 3.998672 GCCGTTGGTGAGGTCGGA 61.999 66.667 6.63 0.00 44.86 4.55
1590 1620 1.538876 CCCCCACTGGAACCTCAGA 60.539 63.158 0.00 0.00 38.11 3.27
1644 1674 0.541998 TCCGCCCATATCCATCGTCT 60.542 55.000 0.00 0.00 0.00 4.18
1671 1701 1.602888 CTTGCTGACAGCCAGGCTT 60.603 57.895 24.33 3.15 41.51 4.35
1719 1749 1.070914 TGGCGTGGTGTCTGTTCAATA 59.929 47.619 0.00 0.00 0.00 1.90
1725 1755 3.182590 ATGCTGGCGTGGTGTCTGT 62.183 57.895 0.00 0.00 0.00 3.41
1739 1769 1.480137 CCTCTTCAGACTTCGGATGCT 59.520 52.381 0.00 0.00 0.00 3.79
1810 1840 1.221293 CCTCCAGCTGCCTCTTCAG 59.779 63.158 8.66 0.00 37.15 3.02
1878 1908 0.038166 GGTTGACCCCAATCTCAGCA 59.962 55.000 0.00 0.00 34.39 4.41
1887 1917 0.325296 AGATAGCTCGGTTGACCCCA 60.325 55.000 0.00 0.00 0.00 4.96
1926 1956 4.838152 GCCGGCATCCTTCGAGCA 62.838 66.667 24.80 0.00 0.00 4.26
1962 1992 2.303311 AGGCTTCACAGGGAAAGTAGTC 59.697 50.000 0.00 0.00 34.44 2.59
1964 1994 2.303022 TCAGGCTTCACAGGGAAAGTAG 59.697 50.000 0.00 0.00 34.44 2.57
1966 1996 1.140312 TCAGGCTTCACAGGGAAAGT 58.860 50.000 0.00 0.00 34.44 2.66
2017 2047 1.153449 TCGCATCATTCGGTCCACC 60.153 57.895 0.00 0.00 0.00 4.61
2138 2168 6.495872 TGCCTACCGACCTACATTATTAAGAT 59.504 38.462 0.00 0.00 0.00 2.40
2139 2169 5.834742 TGCCTACCGACCTACATTATTAAGA 59.165 40.000 0.00 0.00 0.00 2.10
2149 2179 2.005560 GCAAACTGCCTACCGACCTAC 61.006 57.143 0.00 0.00 37.42 3.18
2155 2185 0.392998 AGGATGCAAACTGCCTACCG 60.393 55.000 0.00 0.00 44.23 4.02
2184 2214 4.935205 TCACCTTATGAGAATGTCGTTTGG 59.065 41.667 0.00 0.00 31.91 3.28
2237 2267 6.166279 ACATAATGGCATATCCTAACACGAG 58.834 40.000 0.00 0.00 35.26 4.18
2270 2303 5.047377 AGGAAGTTGCAAAGACAGAAAACAA 60.047 36.000 0.00 0.00 0.00 2.83
2271 2304 4.462483 AGGAAGTTGCAAAGACAGAAAACA 59.538 37.500 0.00 0.00 0.00 2.83
2278 2311 4.523083 ACTAACAGGAAGTTGCAAAGACA 58.477 39.130 0.00 0.00 41.50 3.41
2289 2322 8.622948 AATTTGAAACCTCTACTAACAGGAAG 57.377 34.615 0.00 0.00 33.52 3.46
2303 2336 8.859090 TGAACATCACAATAGAATTTGAAACCT 58.141 29.630 0.00 0.00 0.00 3.50
2304 2337 9.132521 CTGAACATCACAATAGAATTTGAAACC 57.867 33.333 0.00 0.00 0.00 3.27
2312 2348 9.471702 AAAGGATTCTGAACATCACAATAGAAT 57.528 29.630 0.00 0.00 37.53 2.40
2317 2353 7.294017 ACAAAAGGATTCTGAACATCACAAT 57.706 32.000 0.00 0.00 0.00 2.71
2330 2366 4.488879 GCATCTGGTCAACAAAAGGATTC 58.511 43.478 0.00 0.00 0.00 2.52
2334 2370 1.962807 TGGCATCTGGTCAACAAAAGG 59.037 47.619 0.00 0.00 0.00 3.11
2338 2374 2.821378 CAGAATGGCATCTGGTCAACAA 59.179 45.455 15.06 0.00 42.52 2.83
2353 2389 5.047092 AGTTTACCAAAATGCCTCCAGAATG 60.047 40.000 0.00 0.00 0.00 2.67
2386 2422 2.813754 TCCACTTGCACAAAGCTATCAC 59.186 45.455 0.00 0.00 45.94 3.06
2391 2427 1.458639 GCCTCCACTTGCACAAAGCT 61.459 55.000 0.00 0.00 45.94 3.74
2428 2464 0.659427 CACTTGCACATAGATGCCGG 59.341 55.000 0.00 0.00 45.50 6.13
2489 2525 2.290514 TGATTCCTGCCACTTTCTGAGG 60.291 50.000 0.00 0.00 0.00 3.86
2491 2527 3.415212 CTTGATTCCTGCCACTTTCTGA 58.585 45.455 0.00 0.00 0.00 3.27
2493 2529 2.376518 TCCTTGATTCCTGCCACTTTCT 59.623 45.455 0.00 0.00 0.00 2.52
2494 2530 2.751806 CTCCTTGATTCCTGCCACTTTC 59.248 50.000 0.00 0.00 0.00 2.62
2495 2531 2.800250 CTCCTTGATTCCTGCCACTTT 58.200 47.619 0.00 0.00 0.00 2.66
2498 2534 1.034292 GGCTCCTTGATTCCTGCCAC 61.034 60.000 0.00 0.00 40.04 5.01
2499 2535 1.210204 AGGCTCCTTGATTCCTGCCA 61.210 55.000 0.00 0.00 42.46 4.92
2500 2536 0.750911 CAGGCTCCTTGATTCCTGCC 60.751 60.000 0.00 0.00 39.53 4.85
2511 2547 0.036858 GTTCTCGCTTTCAGGCTCCT 60.037 55.000 0.00 0.00 0.00 3.69
2515 2551 1.301677 CCCTGTTCTCGCTTTCAGGC 61.302 60.000 4.73 0.00 44.06 4.85
2562 2598 9.143155 ACCATTCCTTAAGTATTTTGAAAGTGT 57.857 29.630 0.97 0.00 0.00 3.55
2563 2599 9.626045 GACCATTCCTTAAGTATTTTGAAAGTG 57.374 33.333 0.97 0.00 0.00 3.16
2612 2662 9.298250 TGAAGACTGTTACATAACTCTTCTACT 57.702 33.333 21.95 4.75 42.22 2.57
2613 2663 9.909644 TTGAAGACTGTTACATAACTCTTCTAC 57.090 33.333 21.95 8.38 42.22 2.59
2614 2664 9.909644 GTTGAAGACTGTTACATAACTCTTCTA 57.090 33.333 21.95 16.61 42.22 2.10
2615 2665 8.421784 TGTTGAAGACTGTTACATAACTCTTCT 58.578 33.333 21.95 11.65 42.22 2.85
2616 2666 8.589335 TGTTGAAGACTGTTACATAACTCTTC 57.411 34.615 18.20 18.20 42.15 2.87
2617 2667 8.204836 ACTGTTGAAGACTGTTACATAACTCTT 58.795 33.333 6.16 6.16 37.14 2.85
2618 2668 7.727181 ACTGTTGAAGACTGTTACATAACTCT 58.273 34.615 3.58 0.00 37.14 3.24
2619 2669 7.948278 ACTGTTGAAGACTGTTACATAACTC 57.052 36.000 3.58 0.00 37.14 3.01
2620 2670 9.477484 CTTACTGTTGAAGACTGTTACATAACT 57.523 33.333 3.58 0.00 40.42 2.24
2621 2671 9.472361 TCTTACTGTTGAAGACTGTTACATAAC 57.528 33.333 0.00 0.00 40.42 1.89
2677 2733 6.637658 GCATCGACTCCTTAAATACTACACTC 59.362 42.308 0.00 0.00 0.00 3.51
2716 2788 2.684881 CAGATTTTACCAGCAAGCGGAT 59.315 45.455 9.31 0.00 0.00 4.18
2719 2791 3.829886 TTCAGATTTTACCAGCAAGCG 57.170 42.857 0.00 0.00 0.00 4.68
2740 2813 2.868253 GCCGGATGCAAAGGTTAGT 58.132 52.632 5.05 0.00 40.77 2.24
2801 2874 7.062605 GTCAGACCAGTATTTGCATCAATTTTG 59.937 37.037 0.00 0.00 0.00 2.44
2818 2891 2.124983 CCGCCCATGTCAGACCAG 60.125 66.667 0.00 0.00 0.00 4.00
2865 2938 4.221924 AGCACACCAAGTTTTAAACCAACT 59.778 37.500 4.01 0.00 35.94 3.16
2880 2953 2.906389 AGTTCAGGATTCTAGCACACCA 59.094 45.455 0.00 0.00 0.00 4.17
2886 2959 5.845391 AGTAGTGAGTTCAGGATTCTAGC 57.155 43.478 0.00 0.00 0.00 3.42
2924 2997 5.503634 TTCTGGATGAAAGAGTGATGGAA 57.496 39.130 0.00 0.00 0.00 3.53
2925 2998 5.503634 TTTCTGGATGAAAGAGTGATGGA 57.496 39.130 0.00 0.00 39.50 3.41
2935 3013 5.412594 CCGTCAATCTTCTTTCTGGATGAAA 59.587 40.000 0.00 0.00 41.85 2.69
2940 3018 4.770531 TCTACCGTCAATCTTCTTTCTGGA 59.229 41.667 0.00 0.00 0.00 3.86
2947 3025 5.303078 AGTGCATATCTACCGTCAATCTTCT 59.697 40.000 0.00 0.00 0.00 2.85
2948 3026 5.533482 AGTGCATATCTACCGTCAATCTTC 58.467 41.667 0.00 0.00 0.00 2.87
2958 3036 4.755629 TGAGTCTACGAGTGCATATCTACC 59.244 45.833 0.00 0.00 0.00 3.18
2978 3058 4.520492 ACCTCCTGTTTTACTGCAAATGAG 59.480 41.667 0.00 0.00 0.00 2.90
2984 3064 1.953686 GCAACCTCCTGTTTTACTGCA 59.046 47.619 0.00 0.00 34.00 4.41
2987 3067 2.956333 GGTTGCAACCTCCTGTTTTACT 59.044 45.455 36.26 0.00 45.75 2.24
2988 3068 3.364889 GGTTGCAACCTCCTGTTTTAC 57.635 47.619 36.26 9.58 45.75 2.01
3030 3110 0.240945 GTGTCCATTTGGTTCGCTGG 59.759 55.000 0.00 0.00 36.34 4.85
3035 3115 0.240945 CAGCGGTGTCCATTTGGTTC 59.759 55.000 6.41 0.00 36.34 3.62
3044 3124 3.628646 AATCTGGCCAGCGGTGTCC 62.629 63.158 28.91 11.31 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.