Multiple sequence alignment - TraesCS5A01G266400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G266400 chr5A 100.000 5647 0 0 1 5647 477996389 478002035 0.000000e+00 10429.0
1 TraesCS5A01G266400 chr5A 94.796 269 12 2 5019 5286 624934623 624934890 8.750000e-113 418.0
2 TraesCS5A01G266400 chr5A 93.286 283 15 4 5013 5292 509044863 509045144 1.130000e-111 414.0
3 TraesCS5A01G266400 chr5A 92.661 109 8 0 1 109 575755585 575755477 2.110000e-34 158.0
4 TraesCS5A01G266400 chr5D 97.080 4076 92 11 409 4470 377356212 377360274 0.000000e+00 6842.0
5 TraesCS5A01G266400 chr5D 97.317 559 14 1 4471 5028 377360383 377360941 0.000000e+00 948.0
6 TraesCS5A01G266400 chr5D 87.903 372 30 7 4471 4834 69675041 69675405 1.880000e-114 424.0
7 TraesCS5A01G266400 chr5D 85.714 210 18 7 5448 5647 377373750 377373957 1.590000e-50 211.0
8 TraesCS5A01G266400 chr5D 88.415 164 7 10 5283 5437 377360938 377361098 2.690000e-43 187.0
9 TraesCS5A01G266400 chr5D 84.058 138 20 2 111 246 319327625 319327762 1.280000e-26 132.0
10 TraesCS5A01G266400 chr5D 85.217 115 15 2 136 248 276514560 276514674 3.570000e-22 117.0
11 TraesCS5A01G266400 chr5D 89.655 87 8 1 145 230 80219714 80219628 5.980000e-20 110.0
12 TraesCS5A01G266400 chr5B 96.420 3967 108 18 510 4461 450660182 450664129 0.000000e+00 6508.0
13 TraesCS5A01G266400 chr5B 97.317 559 14 1 4471 5028 450664239 450664797 0.000000e+00 948.0
14 TraesCS5A01G266400 chr5B 95.255 274 12 1 5026 5298 517204702 517204429 3.130000e-117 433.0
15 TraesCS5A01G266400 chr5B 89.474 209 15 6 5445 5647 450665129 450665336 2.020000e-64 257.0
16 TraesCS5A01G266400 chr5B 88.415 164 8 8 5283 5440 450664794 450664952 2.690000e-43 187.0
17 TraesCS5A01G266400 chr5B 86.486 111 13 2 136 244 522948004 522948114 2.760000e-23 121.0
18 TraesCS5A01G266400 chr5B 86.239 109 14 1 139 246 657403946 657404054 3.570000e-22 117.0
19 TraesCS5A01G266400 chr5B 85.437 103 14 1 143 244 441681157 441681259 7.740000e-19 106.0
20 TraesCS5A01G266400 chr4B 96.715 274 8 1 5014 5286 217744090 217743817 6.670000e-124 455.0
21 TraesCS5A01G266400 chrUn 97.719 263 5 1 5024 5285 441527270 441527008 8.630000e-123 451.0
22 TraesCS5A01G266400 chr1B 98.444 257 3 1 5024 5279 265967332 265967076 8.630000e-123 451.0
23 TraesCS5A01G266400 chr7A 97.358 265 5 2 5024 5287 43166159 43165896 3.100000e-122 449.0
24 TraesCS5A01G266400 chr7A 97.004 267 6 2 5020 5285 63366111 63365846 1.120000e-121 448.0
25 TraesCS5A01G266400 chr7A 93.636 110 7 0 1 110 518938519 518938628 1.260000e-36 165.0
26 TraesCS5A01G266400 chr7A 92.661 109 8 0 1 109 280676821 280676929 2.110000e-34 158.0
27 TraesCS5A01G266400 chr7A 98.485 66 0 1 5582 5647 677938922 677938986 1.290000e-21 115.0
28 TraesCS5A01G266400 chr3B 96.029 277 9 2 5021 5295 4319635 4319911 3.100000e-122 449.0
29 TraesCS5A01G266400 chr3B 97.255 255 6 1 5026 5279 236150543 236150797 1.120000e-116 431.0
30 TraesCS5A01G266400 chr2B 97.348 264 6 1 5026 5288 496074046 496074309 1.120000e-121 448.0
31 TraesCS5A01G266400 chr2B 95.699 279 10 2 5026 5302 762498946 762498668 1.120000e-121 448.0
32 TraesCS5A01G266400 chr2B 93.907 279 16 1 5024 5301 784720619 784720897 2.430000e-113 420.0
33 TraesCS5A01G266400 chr2A 96.014 276 8 3 5025 5297 16862212 16861937 4.010000e-121 446.0
34 TraesCS5A01G266400 chr2A 88.978 372 26 5 4471 4834 448555416 448555052 4.010000e-121 446.0
35 TraesCS5A01G266400 chr2A 94.717 265 12 2 5026 5288 467248739 467249003 1.460000e-110 411.0
36 TraesCS5A01G266400 chr3D 88.710 372 27 5 4471 4834 335212582 335212946 1.870000e-119 440.0
37 TraesCS5A01G266400 chr3D 98.507 67 0 1 5581 5647 546294013 546293948 3.570000e-22 117.0
38 TraesCS5A01G266400 chr3D 98.462 65 0 1 5581 5645 546316948 546316885 4.620000e-21 113.0
39 TraesCS5A01G266400 chr3D 97.015 67 1 1 5581 5647 546330223 546330158 1.660000e-20 111.0
40 TraesCS5A01G266400 chr7D 88.441 372 28 5 4471 4834 573797406 573797770 8.690000e-118 435.0
41 TraesCS5A01G266400 chr7D 92.661 109 8 0 1 109 317162368 317162476 2.110000e-34 158.0
42 TraesCS5A01G266400 chr1A 87.903 372 30 5 4471 4834 163094961 163095325 1.880000e-114 424.0
43 TraesCS5A01G266400 chr3A 94.495 109 6 0 1 109 338841896 338841788 9.730000e-38 169.0
44 TraesCS5A01G266400 chr3A 83.333 102 14 3 145 244 445849976 445849876 2.170000e-14 91.6
45 TraesCS5A01G266400 chr4A 93.578 109 6 1 1 109 363406628 363406735 1.630000e-35 161.0
46 TraesCS5A01G266400 chr4A 89.431 123 12 1 1 122 164119128 164119250 2.720000e-33 154.0
47 TraesCS5A01G266400 chr1D 91.818 110 9 0 1 110 429878790 429878899 2.720000e-33 154.0
48 TraesCS5A01G266400 chr1D 91.818 110 9 0 1 110 446898835 446898944 2.720000e-33 154.0
49 TraesCS5A01G266400 chr1D 86.458 96 12 1 136 230 389264558 389264653 2.780000e-18 104.0
50 TraesCS5A01G266400 chr7B 98.462 65 0 1 5583 5647 657606596 657606533 4.620000e-21 113.0
51 TraesCS5A01G266400 chr7B 97.015 67 1 1 5581 5647 480799988 480799923 1.660000e-20 111.0
52 TraesCS5A01G266400 chr7B 90.244 82 5 3 5569 5647 657367697 657367616 2.780000e-18 104.0
53 TraesCS5A01G266400 chr7B 83.186 113 17 2 136 246 253709014 253709126 1.000000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G266400 chr5A 477996389 478002035 5646 False 10429 10429 100.000000 1 5647 1 chr5A.!!$F1 5646
1 TraesCS5A01G266400 chr5D 377356212 377361098 4886 False 2659 6842 94.270667 409 5437 3 chr5D.!!$F5 5028
2 TraesCS5A01G266400 chr5B 450660182 450665336 5154 False 1975 6508 92.906500 510 5647 4 chr5B.!!$F4 5137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.031585 CCGTTCTCAGAACACCGACA 59.968 55.0 17.81 0.0 0.00 4.35 F
317 318 0.036671 CTCGGGCCTACTTTTCCGTT 60.037 55.0 0.84 0.0 42.71 4.44 F
407 408 0.040204 CCTGAGGAATGCCCAGGTTT 59.960 55.0 15.90 0.0 42.78 3.27 F
422 423 0.036671 GGTTTAGCCACGGCAGTACT 60.037 55.0 11.35 0.0 44.88 2.73 F
573 575 0.321919 AGGACTCGTGTACGGCAGTA 60.322 55.0 4.44 0.0 40.29 2.74 F
1946 1958 0.605319 TGTCATTCGGTTGACCCTGC 60.605 55.0 13.68 0.0 44.37 4.85 F
2643 2658 0.871057 GTGGCAGCAGAGTTCTTCAC 59.129 55.0 0.00 0.0 0.00 3.18 F
2748 2763 2.859165 TGTCTTCACATTCTGTCCCC 57.141 50.0 0.00 0.0 0.00 4.81 F
4211 4231 0.468226 TTCCCTGTCGAAAGCAGTGT 59.532 50.0 0.00 0.0 34.76 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1376 1385 1.412710 AGGTTCGAGAAGCTCACAACA 59.587 47.619 11.29 0.0 44.95 3.33 R
1806 1818 1.607801 CCAAGGGCTAGGCAAAAGGC 61.608 60.000 19.14 0.0 43.74 4.35 R
1816 1828 1.879575 ATCTGCAGTACCAAGGGCTA 58.120 50.000 14.67 0.0 0.00 3.93 R
1997 2009 3.007940 AGCCTGCAAGTACTCATAACACA 59.992 43.478 0.00 0.0 0.00 3.72 R
2327 2340 3.893720 CTGAAATCAGCAACAGGACAAC 58.106 45.455 0.00 0.0 37.15 3.32 R
3685 3705 1.162698 CATGCCAGAGTGGACAACTG 58.837 55.000 0.00 0.0 40.96 3.16 R
4211 4231 1.570501 AGCAAGCCTTTCCCCATCATA 59.429 47.619 0.00 0.0 0.00 2.15 R
4330 4350 3.805971 CACTTTCGCTATCTGATGCATCA 59.194 43.478 27.10 27.1 35.16 3.07 R
5047 5175 0.527113 CGGCAAATCCAATGTGCAGA 59.473 50.000 4.59 0.0 40.12 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.514274 GGTCTTGAGTTTTGGTTGATGAA 57.486 39.130 0.00 0.00 0.00 2.57
23 24 5.523369 GGTCTTGAGTTTTGGTTGATGAAG 58.477 41.667 0.00 0.00 0.00 3.02
24 25 5.299279 GGTCTTGAGTTTTGGTTGATGAAGA 59.701 40.000 0.00 0.00 0.00 2.87
25 26 6.015940 GGTCTTGAGTTTTGGTTGATGAAGAT 60.016 38.462 0.00 0.00 0.00 2.40
26 27 6.860023 GTCTTGAGTTTTGGTTGATGAAGATG 59.140 38.462 0.00 0.00 0.00 2.90
27 28 5.710513 TGAGTTTTGGTTGATGAAGATGG 57.289 39.130 0.00 0.00 0.00 3.51
28 29 4.523943 TGAGTTTTGGTTGATGAAGATGGG 59.476 41.667 0.00 0.00 0.00 4.00
29 30 3.259123 AGTTTTGGTTGATGAAGATGGGC 59.741 43.478 0.00 0.00 0.00 5.36
30 31 1.851304 TTGGTTGATGAAGATGGGCC 58.149 50.000 0.00 0.00 0.00 5.80
31 32 0.394216 TGGTTGATGAAGATGGGCCG 60.394 55.000 0.00 0.00 0.00 6.13
32 33 0.394352 GGTTGATGAAGATGGGCCGT 60.394 55.000 0.00 0.00 0.00 5.68
33 34 1.134220 GGTTGATGAAGATGGGCCGTA 60.134 52.381 0.00 0.00 0.00 4.02
34 35 1.940613 GTTGATGAAGATGGGCCGTAC 59.059 52.381 0.00 0.00 0.00 3.67
35 36 0.468226 TGATGAAGATGGGCCGTACC 59.532 55.000 0.00 0.00 37.93 3.34
36 37 0.468226 GATGAAGATGGGCCGTACCA 59.532 55.000 0.00 0.00 46.24 3.25
37 38 0.469917 ATGAAGATGGGCCGTACCAG 59.530 55.000 0.00 0.00 45.20 4.00
38 39 1.146263 GAAGATGGGCCGTACCAGG 59.854 63.158 0.00 0.00 45.20 4.45
80 81 2.433446 CCACAGGCAGGCAAGTCT 59.567 61.111 0.00 0.00 0.00 3.24
81 82 1.970114 CCACAGGCAGGCAAGTCTG 60.970 63.158 9.60 9.60 46.41 3.51
82 83 1.970114 CACAGGCAGGCAAGTCTGG 60.970 63.158 14.61 2.24 45.30 3.86
83 84 2.360852 CAGGCAGGCAAGTCTGGG 60.361 66.667 3.62 0.00 37.58 4.45
84 85 2.856000 AGGCAGGCAAGTCTGGGT 60.856 61.111 3.62 0.00 35.43 4.51
85 86 1.538876 AGGCAGGCAAGTCTGGGTA 60.539 57.895 3.62 0.00 35.43 3.69
86 87 1.133809 AGGCAGGCAAGTCTGGGTAA 61.134 55.000 3.62 0.00 35.43 2.85
87 88 0.960861 GGCAGGCAAGTCTGGGTAAC 60.961 60.000 3.62 0.00 35.43 2.50
101 102 2.090400 GGTAACCCCGTTCTCAGAAC 57.910 55.000 7.56 7.56 0.00 3.01
102 103 1.345415 GGTAACCCCGTTCTCAGAACA 59.655 52.381 17.81 0.00 0.00 3.18
103 104 2.410939 GTAACCCCGTTCTCAGAACAC 58.589 52.381 17.81 3.18 0.00 3.32
104 105 0.108019 AACCCCGTTCTCAGAACACC 59.892 55.000 17.81 0.00 0.00 4.16
105 106 1.374252 CCCCGTTCTCAGAACACCG 60.374 63.158 17.81 3.69 0.00 4.94
106 107 1.663739 CCCGTTCTCAGAACACCGA 59.336 57.895 17.81 0.00 0.00 4.69
107 108 0.666577 CCCGTTCTCAGAACACCGAC 60.667 60.000 17.81 0.00 0.00 4.79
108 109 0.031585 CCGTTCTCAGAACACCGACA 59.968 55.000 17.81 0.00 0.00 4.35
109 110 1.537348 CCGTTCTCAGAACACCGACAA 60.537 52.381 17.81 0.00 0.00 3.18
110 111 1.521423 CGTTCTCAGAACACCGACAAC 59.479 52.381 17.81 0.00 0.00 3.32
111 112 2.546778 GTTCTCAGAACACCGACAACA 58.453 47.619 13.01 0.00 0.00 3.33
112 113 2.509052 TCTCAGAACACCGACAACAG 57.491 50.000 0.00 0.00 0.00 3.16
113 114 1.068588 TCTCAGAACACCGACAACAGG 59.931 52.381 0.00 0.00 0.00 4.00
114 115 0.828022 TCAGAACACCGACAACAGGT 59.172 50.000 0.00 0.00 43.97 4.00
119 120 2.508928 ACCGACAACAGGTGGTGG 59.491 61.111 0.00 0.00 41.10 4.61
120 121 2.978010 CCGACAACAGGTGGTGGC 60.978 66.667 0.00 0.00 37.42 5.01
122 123 3.660111 GACAACAGGTGGTGGCGC 61.660 66.667 0.00 0.00 36.97 6.53
123 124 4.189580 ACAACAGGTGGTGGCGCT 62.190 61.111 7.64 0.00 36.97 5.92
124 125 3.663176 CAACAGGTGGTGGCGCTG 61.663 66.667 7.64 0.00 0.00 5.18
125 126 4.189580 AACAGGTGGTGGCGCTGT 62.190 61.111 7.64 0.00 0.00 4.40
126 127 4.626081 ACAGGTGGTGGCGCTGTC 62.626 66.667 7.64 0.00 0.00 3.51
129 130 4.722700 GGTGGTGGCGCTGTCCAT 62.723 66.667 17.92 0.00 38.57 3.41
130 131 3.434319 GTGGTGGCGCTGTCCATG 61.434 66.667 17.92 0.00 38.57 3.66
131 132 3.952508 TGGTGGCGCTGTCCATGT 61.953 61.111 7.64 0.00 38.57 3.21
132 133 3.434319 GGTGGCGCTGTCCATGTG 61.434 66.667 7.64 0.00 38.57 3.21
133 134 4.107051 GTGGCGCTGTCCATGTGC 62.107 66.667 7.64 0.00 38.57 4.57
134 135 4.639906 TGGCGCTGTCCATGTGCA 62.640 61.111 7.64 0.00 42.10 4.57
135 136 3.807538 GGCGCTGTCCATGTGCAG 61.808 66.667 7.64 8.80 42.10 4.41
136 137 3.807538 GCGCTGTCCATGTGCAGG 61.808 66.667 0.00 6.80 40.28 4.85
137 138 2.046988 CGCTGTCCATGTGCAGGA 60.047 61.111 13.40 0.00 33.62 3.86
138 139 2.104859 CGCTGTCCATGTGCAGGAG 61.105 63.158 13.40 0.00 35.42 3.69
139 140 1.748122 GCTGTCCATGTGCAGGAGG 60.748 63.158 13.40 0.00 35.42 4.30
140 141 1.681666 CTGTCCATGTGCAGGAGGT 59.318 57.895 0.00 0.00 35.42 3.85
141 142 0.675837 CTGTCCATGTGCAGGAGGTG 60.676 60.000 0.00 0.00 35.42 4.00
150 151 3.957260 CAGGAGGTGCAACGAGTG 58.043 61.111 0.00 0.00 38.12 3.51
151 152 1.367471 CAGGAGGTGCAACGAGTGA 59.633 57.895 0.00 0.00 38.12 3.41
152 153 0.249868 CAGGAGGTGCAACGAGTGAA 60.250 55.000 0.00 0.00 38.12 3.18
153 154 0.468226 AGGAGGTGCAACGAGTGAAA 59.532 50.000 0.00 0.00 38.12 2.69
154 155 1.134220 AGGAGGTGCAACGAGTGAAAA 60.134 47.619 0.00 0.00 38.12 2.29
155 156 1.673920 GGAGGTGCAACGAGTGAAAAA 59.326 47.619 0.00 0.00 38.12 1.94
170 171 2.772102 AAAAATTCCCACCCCAGGC 58.228 52.632 0.00 0.00 0.00 4.85
171 172 0.840288 AAAAATTCCCACCCCAGGCC 60.840 55.000 0.00 0.00 0.00 5.19
172 173 2.042279 AAAATTCCCACCCCAGGCCA 62.042 55.000 5.01 0.00 0.00 5.36
173 174 2.042279 AAATTCCCACCCCAGGCCAA 62.042 55.000 5.01 0.00 0.00 4.52
174 175 2.042279 AATTCCCACCCCAGGCCAAA 62.042 55.000 5.01 0.00 0.00 3.28
175 176 2.460476 ATTCCCACCCCAGGCCAAAG 62.460 60.000 5.01 0.00 0.00 2.77
176 177 3.914713 CCCACCCCAGGCCAAAGT 61.915 66.667 5.01 0.00 0.00 2.66
177 178 2.201210 CCACCCCAGGCCAAAGTT 59.799 61.111 5.01 0.00 0.00 2.66
178 179 1.908299 CCACCCCAGGCCAAAGTTC 60.908 63.158 5.01 0.00 0.00 3.01
179 180 1.153756 CACCCCAGGCCAAAGTTCT 59.846 57.895 5.01 0.00 0.00 3.01
180 181 0.895559 CACCCCAGGCCAAAGTTCTC 60.896 60.000 5.01 0.00 0.00 2.87
181 182 1.675641 CCCCAGGCCAAAGTTCTCG 60.676 63.158 5.01 0.00 0.00 4.04
182 183 2.335712 CCCAGGCCAAAGTTCTCGC 61.336 63.158 5.01 0.00 0.00 5.03
183 184 2.335712 CCAGGCCAAAGTTCTCGCC 61.336 63.158 5.01 0.00 41.96 5.54
184 185 2.358737 AGGCCAAAGTTCTCGCCG 60.359 61.111 5.01 0.00 46.36 6.46
185 186 3.431725 GGCCAAAGTTCTCGCCGG 61.432 66.667 0.00 0.00 0.00 6.13
186 187 4.103103 GCCAAAGTTCTCGCCGGC 62.103 66.667 19.07 19.07 0.00 6.13
187 188 2.668212 CCAAAGTTCTCGCCGGCA 60.668 61.111 28.98 12.94 0.00 5.69
188 189 2.680913 CCAAAGTTCTCGCCGGCAG 61.681 63.158 28.98 21.96 0.00 4.85
189 190 3.050275 AAAGTTCTCGCCGGCAGC 61.050 61.111 28.98 9.36 38.52 5.25
230 231 2.169832 CCTCTTGAAAGGCTCAACGA 57.830 50.000 0.00 0.00 39.20 3.85
231 232 1.801178 CCTCTTGAAAGGCTCAACGAC 59.199 52.381 0.00 0.00 39.20 4.34
232 233 1.457303 CTCTTGAAAGGCTCAACGACG 59.543 52.381 0.00 0.00 39.20 5.12
233 234 0.512952 CTTGAAAGGCTCAACGACGG 59.487 55.000 0.00 0.00 39.20 4.79
234 235 0.105224 TTGAAAGGCTCAACGACGGA 59.895 50.000 0.00 0.00 39.20 4.69
235 236 0.105224 TGAAAGGCTCAACGACGGAA 59.895 50.000 0.00 0.00 0.00 4.30
236 237 0.790814 GAAAGGCTCAACGACGGAAG 59.209 55.000 0.00 0.00 0.00 3.46
237 238 0.391597 AAAGGCTCAACGACGGAAGA 59.608 50.000 0.00 0.00 0.00 2.87
238 239 0.608640 AAGGCTCAACGACGGAAGAT 59.391 50.000 0.00 0.00 0.00 2.40
239 240 1.471119 AGGCTCAACGACGGAAGATA 58.529 50.000 0.00 0.00 0.00 1.98
240 241 1.134560 AGGCTCAACGACGGAAGATAC 59.865 52.381 0.00 0.00 0.00 2.24
241 242 1.134560 GGCTCAACGACGGAAGATACT 59.865 52.381 0.00 0.00 0.00 2.12
242 243 2.452105 GCTCAACGACGGAAGATACTC 58.548 52.381 0.00 0.00 0.00 2.59
243 244 2.097791 GCTCAACGACGGAAGATACTCT 59.902 50.000 0.00 0.00 0.00 3.24
244 245 3.311871 GCTCAACGACGGAAGATACTCTA 59.688 47.826 0.00 0.00 0.00 2.43
245 246 4.201891 GCTCAACGACGGAAGATACTCTAA 60.202 45.833 0.00 0.00 0.00 2.10
246 247 5.675575 GCTCAACGACGGAAGATACTCTAAA 60.676 44.000 0.00 0.00 0.00 1.85
247 248 6.258230 TCAACGACGGAAGATACTCTAAAA 57.742 37.500 0.00 0.00 0.00 1.52
248 249 6.088824 TCAACGACGGAAGATACTCTAAAAC 58.911 40.000 0.00 0.00 0.00 2.43
249 250 4.991472 ACGACGGAAGATACTCTAAAACC 58.009 43.478 0.00 0.00 0.00 3.27
250 251 4.142293 ACGACGGAAGATACTCTAAAACCC 60.142 45.833 0.00 0.00 0.00 4.11
251 252 4.097589 CGACGGAAGATACTCTAAAACCCT 59.902 45.833 0.00 0.00 0.00 4.34
252 253 5.297776 CGACGGAAGATACTCTAAAACCCTA 59.702 44.000 0.00 0.00 0.00 3.53
253 254 6.462552 ACGGAAGATACTCTAAAACCCTAC 57.537 41.667 0.00 0.00 0.00 3.18
254 255 5.362143 ACGGAAGATACTCTAAAACCCTACC 59.638 44.000 0.00 0.00 0.00 3.18
255 256 5.597594 CGGAAGATACTCTAAAACCCTACCT 59.402 44.000 0.00 0.00 0.00 3.08
256 257 6.774656 CGGAAGATACTCTAAAACCCTACCTA 59.225 42.308 0.00 0.00 0.00 3.08
257 258 7.450944 CGGAAGATACTCTAAAACCCTACCTAT 59.549 40.741 0.00 0.00 0.00 2.57
258 259 8.805175 GGAAGATACTCTAAAACCCTACCTATC 58.195 40.741 0.00 0.00 0.00 2.08
259 260 8.724113 AAGATACTCTAAAACCCTACCTATCC 57.276 38.462 0.00 0.00 0.00 2.59
260 261 7.834046 AGATACTCTAAAACCCTACCTATCCA 58.166 38.462 0.00 0.00 0.00 3.41
261 262 7.729431 AGATACTCTAAAACCCTACCTATCCAC 59.271 40.741 0.00 0.00 0.00 4.02
262 263 5.851418 ACTCTAAAACCCTACCTATCCACT 58.149 41.667 0.00 0.00 0.00 4.00
263 264 6.989894 ACTCTAAAACCCTACCTATCCACTA 58.010 40.000 0.00 0.00 0.00 2.74
264 265 7.425003 ACTCTAAAACCCTACCTATCCACTAA 58.575 38.462 0.00 0.00 0.00 2.24
265 266 7.344093 ACTCTAAAACCCTACCTATCCACTAAC 59.656 40.741 0.00 0.00 0.00 2.34
266 267 5.705397 AAAACCCTACCTATCCACTAACC 57.295 43.478 0.00 0.00 0.00 2.85
267 268 2.954792 ACCCTACCTATCCACTAACCG 58.045 52.381 0.00 0.00 0.00 4.44
268 269 2.515429 ACCCTACCTATCCACTAACCGA 59.485 50.000 0.00 0.00 0.00 4.69
269 270 2.889678 CCCTACCTATCCACTAACCGAC 59.110 54.545 0.00 0.00 0.00 4.79
270 271 2.889678 CCTACCTATCCACTAACCGACC 59.110 54.545 0.00 0.00 0.00 4.79
271 272 1.396653 ACCTATCCACTAACCGACCG 58.603 55.000 0.00 0.00 0.00 4.79
272 273 1.064463 ACCTATCCACTAACCGACCGA 60.064 52.381 0.00 0.00 0.00 4.69
273 274 1.607628 CCTATCCACTAACCGACCGAG 59.392 57.143 0.00 0.00 0.00 4.63
274 275 1.607628 CTATCCACTAACCGACCGAGG 59.392 57.143 0.00 0.00 37.30 4.63
275 276 1.673808 ATCCACTAACCGACCGAGGC 61.674 60.000 0.00 0.00 33.69 4.70
276 277 2.642254 CCACTAACCGACCGAGGCA 61.642 63.158 0.00 0.00 33.69 4.75
277 278 1.515954 CACTAACCGACCGAGGCAT 59.484 57.895 0.00 0.00 33.69 4.40
278 279 0.527817 CACTAACCGACCGAGGCATC 60.528 60.000 0.00 0.00 33.69 3.91
279 280 0.968901 ACTAACCGACCGAGGCATCA 60.969 55.000 0.00 0.00 33.69 3.07
280 281 0.174845 CTAACCGACCGAGGCATCAA 59.825 55.000 0.00 0.00 33.69 2.57
281 282 0.609151 TAACCGACCGAGGCATCAAA 59.391 50.000 0.00 0.00 33.69 2.69
282 283 0.250553 AACCGACCGAGGCATCAAAA 60.251 50.000 0.00 0.00 33.69 2.44
283 284 0.250553 ACCGACCGAGGCATCAAAAA 60.251 50.000 0.00 0.00 33.69 1.94
284 285 0.168128 CCGACCGAGGCATCAAAAAC 59.832 55.000 0.00 0.00 0.00 2.43
285 286 1.156736 CGACCGAGGCATCAAAAACT 58.843 50.000 0.00 0.00 0.00 2.66
286 287 1.135972 CGACCGAGGCATCAAAAACTG 60.136 52.381 0.00 0.00 0.00 3.16
287 288 0.598065 ACCGAGGCATCAAAAACTGC 59.402 50.000 0.00 0.00 37.66 4.40
288 289 0.883833 CCGAGGCATCAAAAACTGCT 59.116 50.000 0.00 0.00 38.45 4.24
289 290 1.135575 CCGAGGCATCAAAAACTGCTC 60.136 52.381 0.00 0.00 38.45 4.26
290 291 1.808945 CGAGGCATCAAAAACTGCTCT 59.191 47.619 0.00 0.00 38.45 4.09
291 292 2.227388 CGAGGCATCAAAAACTGCTCTT 59.773 45.455 0.00 0.00 38.45 2.85
292 293 3.304928 CGAGGCATCAAAAACTGCTCTTT 60.305 43.478 0.00 0.00 38.45 2.52
293 294 4.625028 GAGGCATCAAAAACTGCTCTTTT 58.375 39.130 0.00 0.00 38.45 2.27
294 295 5.027293 AGGCATCAAAAACTGCTCTTTTT 57.973 34.783 0.00 0.39 38.45 1.94
295 296 6.160576 AGGCATCAAAAACTGCTCTTTTTA 57.839 33.333 4.86 0.00 38.45 1.52
296 297 6.218746 AGGCATCAAAAACTGCTCTTTTTAG 58.781 36.000 4.86 0.00 38.45 1.85
297 298 5.406477 GGCATCAAAAACTGCTCTTTTTAGG 59.594 40.000 4.86 1.12 38.45 2.69
298 299 5.107337 GCATCAAAAACTGCTCTTTTTAGGC 60.107 40.000 4.86 5.70 32.66 3.93
299 300 5.852282 TCAAAAACTGCTCTTTTTAGGCT 57.148 34.783 0.00 0.00 32.66 4.58
300 301 5.831997 TCAAAAACTGCTCTTTTTAGGCTC 58.168 37.500 0.00 0.00 32.66 4.70
301 302 4.489679 AAAACTGCTCTTTTTAGGCTCG 57.510 40.909 0.00 0.00 0.00 5.03
302 303 2.100605 ACTGCTCTTTTTAGGCTCGG 57.899 50.000 0.00 0.00 0.00 4.63
303 304 1.339151 ACTGCTCTTTTTAGGCTCGGG 60.339 52.381 0.00 0.00 0.00 5.14
304 305 0.676782 TGCTCTTTTTAGGCTCGGGC 60.677 55.000 0.00 0.00 37.82 6.13
314 315 4.220413 GCTCGGGCCTACTTTTCC 57.780 61.111 0.84 0.00 0.00 3.13
315 316 1.814169 GCTCGGGCCTACTTTTCCG 60.814 63.158 0.84 0.00 43.42 4.30
316 317 1.595357 CTCGGGCCTACTTTTCCGT 59.405 57.895 0.84 0.00 42.71 4.69
317 318 0.036671 CTCGGGCCTACTTTTCCGTT 60.037 55.000 0.84 0.00 42.71 4.44
318 319 0.397564 TCGGGCCTACTTTTCCGTTT 59.602 50.000 0.84 0.00 42.71 3.60
319 320 1.202794 TCGGGCCTACTTTTCCGTTTT 60.203 47.619 0.84 0.00 42.71 2.43
320 321 1.610038 CGGGCCTACTTTTCCGTTTTT 59.390 47.619 0.84 0.00 37.92 1.94
350 351 4.577246 GGCCAGGCTCGAGCGTAG 62.577 72.222 30.12 24.46 43.26 3.51
351 352 3.518998 GCCAGGCTCGAGCGTAGA 61.519 66.667 30.12 0.00 43.26 2.59
352 353 2.409651 CCAGGCTCGAGCGTAGAC 59.590 66.667 30.12 16.61 43.26 2.59
353 354 2.115911 CCAGGCTCGAGCGTAGACT 61.116 63.158 30.12 18.61 43.26 3.24
354 355 1.658686 CCAGGCTCGAGCGTAGACTT 61.659 60.000 30.12 7.77 43.26 3.01
355 356 0.171455 CAGGCTCGAGCGTAGACTTT 59.829 55.000 30.12 6.42 43.26 2.66
356 357 0.171455 AGGCTCGAGCGTAGACTTTG 59.829 55.000 29.69 0.00 43.26 2.77
357 358 1.414527 GGCTCGAGCGTAGACTTTGC 61.415 60.000 29.81 9.18 43.26 3.68
358 359 1.414527 GCTCGAGCGTAGACTTTGCC 61.415 60.000 23.61 0.00 0.00 4.52
359 360 0.802607 CTCGAGCGTAGACTTTGCCC 60.803 60.000 0.00 0.00 0.00 5.36
360 361 2.158959 CGAGCGTAGACTTTGCCCG 61.159 63.158 0.00 0.00 0.00 6.13
361 362 1.080025 GAGCGTAGACTTTGCCCGT 60.080 57.895 0.00 0.00 0.00 5.28
362 363 1.077089 GAGCGTAGACTTTGCCCGTC 61.077 60.000 0.00 0.00 0.00 4.79
363 364 2.442188 GCGTAGACTTTGCCCGTCG 61.442 63.158 0.00 0.00 36.53 5.12
364 365 1.804326 CGTAGACTTTGCCCGTCGG 60.804 63.158 3.60 3.60 36.53 4.79
393 394 4.785453 GCCCGAACCTGGCCTGAG 62.785 72.222 11.88 3.93 43.33 3.35
394 395 4.101448 CCCGAACCTGGCCTGAGG 62.101 72.222 11.88 9.60 39.28 3.86
395 396 3.003173 CCGAACCTGGCCTGAGGA 61.003 66.667 15.94 0.00 36.51 3.71
396 397 2.592993 CCGAACCTGGCCTGAGGAA 61.593 63.158 15.94 0.00 36.51 3.36
397 398 1.604378 CGAACCTGGCCTGAGGAAT 59.396 57.895 15.94 4.22 36.51 3.01
398 399 0.745845 CGAACCTGGCCTGAGGAATG 60.746 60.000 15.94 1.18 36.51 2.67
399 400 1.000396 AACCTGGCCTGAGGAATGC 60.000 57.895 15.94 0.00 36.51 3.56
400 401 2.123982 CCTGGCCTGAGGAATGCC 60.124 66.667 11.88 0.00 45.56 4.40
401 402 2.123982 CTGGCCTGAGGAATGCCC 60.124 66.667 0.65 0.00 44.72 5.36
402 403 2.940467 TGGCCTGAGGAATGCCCA 60.940 61.111 0.65 0.00 44.72 5.36
403 404 2.123982 GGCCTGAGGAATGCCCAG 60.124 66.667 0.65 1.99 39.30 4.45
404 405 2.123982 GCCTGAGGAATGCCCAGG 60.124 66.667 18.66 18.66 46.81 4.45
405 406 2.988839 GCCTGAGGAATGCCCAGGT 61.989 63.158 22.01 0.00 46.27 4.00
406 407 1.693640 CCTGAGGAATGCCCAGGTT 59.306 57.895 15.90 0.00 42.78 3.50
407 408 0.040204 CCTGAGGAATGCCCAGGTTT 59.960 55.000 15.90 0.00 42.78 3.27
422 423 0.036671 GGTTTAGCCACGGCAGTACT 60.037 55.000 11.35 0.00 44.88 2.73
475 476 2.664851 CACCACCGCGAGCAGAAA 60.665 61.111 8.23 0.00 0.00 2.52
478 479 2.671177 CCACCGCGAGCAGAAACAG 61.671 63.158 8.23 0.00 0.00 3.16
479 480 1.664649 CACCGCGAGCAGAAACAGA 60.665 57.895 8.23 0.00 0.00 3.41
511 512 3.374332 GGGAACCGGAAGTCTCGT 58.626 61.111 9.46 0.00 40.86 4.18
512 513 1.080025 GGGAACCGGAAGTCTCGTG 60.080 63.158 9.46 0.00 40.86 4.35
513 514 1.664306 GGAACCGGAAGTCTCGTGT 59.336 57.895 9.46 0.00 0.00 4.49
517 519 2.504244 CGGAAGTCTCGTGTCGCC 60.504 66.667 0.00 0.00 0.00 5.54
570 572 1.457823 AACAGGACTCGTGTACGGCA 61.458 55.000 4.84 0.00 40.29 5.69
571 573 1.154016 CAGGACTCGTGTACGGCAG 60.154 63.158 4.44 0.00 40.29 4.85
572 574 1.602888 AGGACTCGTGTACGGCAGT 60.603 57.895 4.44 1.64 40.29 4.40
573 575 0.321919 AGGACTCGTGTACGGCAGTA 60.322 55.000 4.44 0.00 40.29 2.74
700 709 2.027625 AAAACTCTTCGCGCGGAGG 61.028 57.895 35.99 27.51 34.22 4.30
701 710 3.934391 AAACTCTTCGCGCGGAGGG 62.934 63.158 35.84 35.84 46.11 4.30
730 739 0.972883 TTTTTCCAGGGGGCAAATCG 59.027 50.000 0.00 0.00 29.27 3.34
739 748 1.545841 GGGGCAAATCGGAAAAGTCT 58.454 50.000 0.00 0.00 0.00 3.24
782 791 4.484872 GAACCCTACCTGCCGCCC 62.485 72.222 0.00 0.00 0.00 6.13
1152 1161 5.465724 GGAGGAAACTGGCATAAGTTATACG 59.534 44.000 0.00 0.00 44.43 3.06
1182 1191 8.284945 AGTACCTAATTACGTGAATAGACACA 57.715 34.615 4.10 0.00 40.34 3.72
1183 1192 8.742777 AGTACCTAATTACGTGAATAGACACAA 58.257 33.333 4.10 0.00 40.34 3.33
1289 1298 2.435059 GCACGGCCCTGAAGAGAC 60.435 66.667 5.85 0.00 0.00 3.36
1313 1322 7.686434 ACAGGAGCATAAAGTAGTTCCTTTTA 58.314 34.615 0.00 0.00 36.18 1.52
1321 1330 6.720112 AAAGTAGTTCCTTTTACCAAACCC 57.280 37.500 0.00 0.00 30.58 4.11
1337 1346 4.562963 CCAAACCCTTGGTACTACAGACTC 60.563 50.000 0.00 0.00 46.25 3.36
1376 1385 3.567478 AAATCTATTCTTCCCTGCGCT 57.433 42.857 9.73 0.00 0.00 5.92
1580 1589 3.878160 TGTTGTTTTGACTTTGACCCC 57.122 42.857 0.00 0.00 0.00 4.95
1806 1818 1.134280 CATGGCCCTGGAGAAGTAGTG 60.134 57.143 0.00 0.00 0.00 2.74
1816 1828 2.553247 GGAGAAGTAGTGCCTTTTGCCT 60.553 50.000 0.00 0.00 40.16 4.75
1946 1958 0.605319 TGTCATTCGGTTGACCCTGC 60.605 55.000 13.68 0.00 44.37 4.85
2008 2020 4.460263 TGAGGTGCTTTTGTGTTATGAGT 58.540 39.130 0.00 0.00 0.00 3.41
2327 2340 7.525417 ATGGCTACATTTTCAGTAACCACTGG 61.525 42.308 5.04 0.00 42.70 4.00
2643 2658 0.871057 GTGGCAGCAGAGTTCTTCAC 59.129 55.000 0.00 0.00 0.00 3.18
2748 2763 2.859165 TGTCTTCACATTCTGTCCCC 57.141 50.000 0.00 0.00 0.00 4.81
3304 3324 9.087424 GTTTTCAACCCTTTGCTATGAATTATC 57.913 33.333 0.00 0.00 32.17 1.75
3423 3443 4.142966 CCTCCGTTCGGAAATAAGTGTTTC 60.143 45.833 14.79 0.00 37.37 2.78
3488 3508 7.955750 AGGGAATATAAATTAGTGGGGAAATGG 59.044 37.037 0.00 0.00 0.00 3.16
3552 3572 8.000780 AGAGTGGTATCATGGCTTAAAATTTC 57.999 34.615 0.00 0.00 0.00 2.17
3655 3675 7.119846 GTCTACATGGAGACTTATGCTTTGTTT 59.880 37.037 27.91 0.00 42.26 2.83
3685 3705 5.048713 CCGGGCTATGGAGATTTGTTTAATC 60.049 44.000 0.00 0.00 42.51 1.75
4103 4123 5.803020 ACTTTATTTTCTCGATGCAGGTC 57.197 39.130 0.00 0.00 0.00 3.85
4126 4146 4.572389 CGAGAGGGTATTGTCAAATCCAAG 59.428 45.833 10.27 0.00 0.00 3.61
4211 4231 0.468226 TTCCCTGTCGAAAGCAGTGT 59.532 50.000 0.00 0.00 34.76 3.55
4330 4350 3.093814 TGATGCAATTGCCAGTCTTGAT 58.906 40.909 26.94 11.39 41.18 2.57
4488 4616 6.074005 GCATTAACTAATGATTACTCGCAGC 58.926 40.000 12.61 0.00 44.40 5.25
4495 4623 2.554142 TGATTACTCGCAGCAATCAGG 58.446 47.619 2.48 0.00 34.58 3.86
4864 4992 3.181470 GCCTTTCCTCTCTGATGGACTAC 60.181 52.174 0.00 0.00 31.24 2.73
4960 5088 2.413310 TAACCTTGGCCGAAATCTCC 57.587 50.000 0.00 0.00 0.00 3.71
4972 5100 3.668656 CCGAAATCTCCGTTTTTCTTTGC 59.331 43.478 0.00 0.00 31.20 3.68
4974 5102 4.556699 CGAAATCTCCGTTTTTCTTTGCCT 60.557 41.667 0.00 0.00 31.20 4.75
5019 5147 0.541392 TGGGCATACTGGCTGTACTG 59.459 55.000 6.37 7.71 43.20 2.74
5020 5148 0.541863 GGGCATACTGGCTGTACTGT 59.458 55.000 6.37 0.00 43.20 3.55
5021 5149 1.760613 GGGCATACTGGCTGTACTGTA 59.239 52.381 6.37 0.00 43.20 2.74
5022 5150 2.224066 GGGCATACTGGCTGTACTGTAG 60.224 54.545 6.37 3.65 43.20 2.74
5023 5151 2.431057 GGCATACTGGCTGTACTGTAGT 59.569 50.000 6.37 13.31 40.14 2.73
5024 5152 3.448686 GCATACTGGCTGTACTGTAGTG 58.551 50.000 6.37 1.81 33.45 2.74
5025 5153 3.119101 GCATACTGGCTGTACTGTAGTGT 60.119 47.826 6.37 10.39 33.45 3.55
5026 5154 4.097437 GCATACTGGCTGTACTGTAGTGTA 59.903 45.833 6.37 9.27 33.45 2.90
5027 5155 5.579718 CATACTGGCTGTACTGTAGTGTAC 58.420 45.833 6.37 0.00 42.10 2.90
5028 5156 3.764218 ACTGGCTGTACTGTAGTGTACT 58.236 45.455 9.71 0.00 42.22 2.73
5029 5157 3.757493 ACTGGCTGTACTGTAGTGTACTC 59.243 47.826 9.71 0.00 42.22 2.59
5030 5158 3.087031 TGGCTGTACTGTAGTGTACTCC 58.913 50.000 1.46 7.62 42.22 3.85
5031 5159 2.426381 GGCTGTACTGTAGTGTACTCCC 59.574 54.545 1.46 3.53 42.22 4.30
5032 5160 3.354467 GCTGTACTGTAGTGTACTCCCT 58.646 50.000 1.46 0.00 42.22 4.20
5033 5161 3.377798 GCTGTACTGTAGTGTACTCCCTC 59.622 52.174 1.46 0.00 42.22 4.30
5034 5162 3.946558 CTGTACTGTAGTGTACTCCCTCC 59.053 52.174 6.41 0.00 42.22 4.30
5035 5163 2.125773 ACTGTAGTGTACTCCCTCCG 57.874 55.000 0.00 0.00 0.00 4.63
5036 5164 1.340795 ACTGTAGTGTACTCCCTCCGG 60.341 57.143 0.00 0.00 0.00 5.14
5037 5165 0.700564 TGTAGTGTACTCCCTCCGGT 59.299 55.000 0.00 0.00 0.00 5.28
5038 5166 1.340405 TGTAGTGTACTCCCTCCGGTC 60.340 57.143 0.00 0.00 0.00 4.79
5039 5167 0.257039 TAGTGTACTCCCTCCGGTCC 59.743 60.000 0.00 0.00 0.00 4.46
5040 5168 1.000107 GTGTACTCCCTCCGGTCCT 60.000 63.158 0.00 0.00 0.00 3.85
5041 5169 0.614134 GTGTACTCCCTCCGGTCCTT 60.614 60.000 0.00 0.00 0.00 3.36
5042 5170 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
5043 5171 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
5044 5172 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
5045 5173 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
5046 5174 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
5047 5175 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
5048 5176 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
5049 5177 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
5050 5178 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
5051 5179 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
5052 5180 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
5053 5181 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
5054 5182 2.489971 CGGTCCTTTTTACTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
5055 5183 3.074412 CGGTCCTTTTTACTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
5056 5184 3.502211 CGGTCCTTTTTACTCTGCACATT 59.498 43.478 0.00 0.00 0.00 2.71
5057 5185 4.613622 CGGTCCTTTTTACTCTGCACATTG 60.614 45.833 0.00 0.00 0.00 2.82
5058 5186 4.321230 GGTCCTTTTTACTCTGCACATTGG 60.321 45.833 0.00 0.00 0.00 3.16
5059 5187 4.518970 GTCCTTTTTACTCTGCACATTGGA 59.481 41.667 0.00 0.00 0.00 3.53
5060 5188 5.183904 GTCCTTTTTACTCTGCACATTGGAT 59.816 40.000 0.00 0.00 0.00 3.41
5061 5189 5.774690 TCCTTTTTACTCTGCACATTGGATT 59.225 36.000 0.00 0.00 0.00 3.01
5062 5190 6.267471 TCCTTTTTACTCTGCACATTGGATTT 59.733 34.615 0.00 0.00 0.00 2.17
5063 5191 6.366877 CCTTTTTACTCTGCACATTGGATTTG 59.633 38.462 0.00 0.00 0.00 2.32
5064 5192 4.439305 TTACTCTGCACATTGGATTTGC 57.561 40.909 0.00 0.00 36.76 3.68
5065 5193 1.547372 ACTCTGCACATTGGATTTGCC 59.453 47.619 0.00 0.00 35.26 4.52
5066 5194 0.527113 TCTGCACATTGGATTTGCCG 59.473 50.000 0.00 0.00 40.66 5.69
5067 5195 0.527113 CTGCACATTGGATTTGCCGA 59.473 50.000 0.00 0.00 40.66 5.54
5068 5196 0.964700 TGCACATTGGATTTGCCGAA 59.035 45.000 0.00 0.00 40.66 4.30
5069 5197 1.342496 TGCACATTGGATTTGCCGAAA 59.658 42.857 0.00 0.00 40.66 3.46
5070 5198 1.994779 GCACATTGGATTTGCCGAAAG 59.005 47.619 0.00 0.00 40.66 2.62
5071 5199 2.610232 GCACATTGGATTTGCCGAAAGT 60.610 45.455 0.00 0.00 40.66 2.66
5072 5200 3.244976 CACATTGGATTTGCCGAAAGTC 58.755 45.455 0.00 0.00 40.66 3.01
5073 5201 2.890311 ACATTGGATTTGCCGAAAGTCA 59.110 40.909 0.00 0.00 40.66 3.41
5074 5202 3.320541 ACATTGGATTTGCCGAAAGTCAA 59.679 39.130 0.00 0.00 40.66 3.18
5075 5203 4.202202 ACATTGGATTTGCCGAAAGTCAAA 60.202 37.500 0.00 0.00 40.66 2.69
5076 5204 3.363341 TGGATTTGCCGAAAGTCAAAC 57.637 42.857 0.00 0.00 40.66 2.93
5077 5205 2.955660 TGGATTTGCCGAAAGTCAAACT 59.044 40.909 0.00 0.00 40.66 2.66
5078 5206 3.383185 TGGATTTGCCGAAAGTCAAACTT 59.617 39.130 0.00 0.00 38.90 2.66
5079 5207 4.580995 TGGATTTGCCGAAAGTCAAACTTA 59.419 37.500 0.00 0.00 37.09 2.24
5080 5208 5.154222 GGATTTGCCGAAAGTCAAACTTAG 58.846 41.667 0.00 0.00 37.47 2.18
5081 5209 3.619233 TTGCCGAAAGTCAAACTTAGC 57.381 42.857 0.00 0.00 37.47 3.09
5082 5210 2.846193 TGCCGAAAGTCAAACTTAGCT 58.154 42.857 0.00 0.00 37.47 3.32
5083 5211 3.997762 TGCCGAAAGTCAAACTTAGCTA 58.002 40.909 0.00 0.00 37.47 3.32
5084 5212 4.382291 TGCCGAAAGTCAAACTTAGCTAA 58.618 39.130 5.94 5.94 37.47 3.09
5085 5213 4.451096 TGCCGAAAGTCAAACTTAGCTAAG 59.549 41.667 28.16 28.16 37.47 2.18
5178 5306 9.610705 ATTCCGAGATGAATCTAATGATATTGG 57.389 33.333 0.00 0.00 37.25 3.16
5179 5307 8.138928 TCCGAGATGAATCTAATGATATTGGT 57.861 34.615 0.00 0.00 37.25 3.67
5180 5308 8.037166 TCCGAGATGAATCTAATGATATTGGTG 58.963 37.037 0.00 0.00 37.25 4.17
5181 5309 7.821359 CCGAGATGAATCTAATGATATTGGTGT 59.179 37.037 0.00 0.00 37.25 4.16
5182 5310 9.212641 CGAGATGAATCTAATGATATTGGTGTT 57.787 33.333 0.00 0.00 37.25 3.32
5184 5312 9.857656 AGATGAATCTAATGATATTGGTGTTGT 57.142 29.630 0.00 0.00 34.85 3.32
5237 5365 5.972107 CTTGGTCAAAGTTGGATGAGATT 57.028 39.130 0.00 0.00 0.00 2.40
5238 5366 5.706916 CTTGGTCAAAGTTGGATGAGATTG 58.293 41.667 0.00 0.00 0.00 2.67
5239 5367 4.984295 TGGTCAAAGTTGGATGAGATTGA 58.016 39.130 0.00 0.00 0.00 2.57
5240 5368 4.761739 TGGTCAAAGTTGGATGAGATTGAC 59.238 41.667 7.68 7.68 43.51 3.18
5241 5369 5.006386 GGTCAAAGTTGGATGAGATTGACT 58.994 41.667 13.97 0.00 43.66 3.41
5242 5370 5.474876 GGTCAAAGTTGGATGAGATTGACTT 59.525 40.000 13.97 0.00 43.66 3.01
5243 5371 6.348868 GGTCAAAGTTGGATGAGATTGACTTC 60.349 42.308 13.97 0.00 43.66 3.01
5244 5372 6.205464 GTCAAAGTTGGATGAGATTGACTTCA 59.795 38.462 8.70 0.00 41.92 3.02
5245 5373 6.772233 TCAAAGTTGGATGAGATTGACTTCAA 59.228 34.615 0.00 0.00 40.51 2.69
5247 5375 8.733458 CAAAGTTGGATGAGATTGACTTCAATA 58.267 33.333 4.42 0.00 45.72 1.90
5248 5376 8.868522 AAGTTGGATGAGATTGACTTCAATAA 57.131 30.769 4.42 0.00 45.72 1.40
5249 5377 8.868522 AGTTGGATGAGATTGACTTCAATAAA 57.131 30.769 4.42 0.00 45.72 1.40
5250 5378 8.734386 AGTTGGATGAGATTGACTTCAATAAAC 58.266 33.333 4.42 1.25 45.72 2.01
5251 5379 7.630242 TGGATGAGATTGACTTCAATAAACC 57.370 36.000 4.42 5.64 45.72 3.27
5252 5380 7.405292 TGGATGAGATTGACTTCAATAAACCT 58.595 34.615 4.42 0.00 45.72 3.50
5253 5381 8.548025 TGGATGAGATTGACTTCAATAAACCTA 58.452 33.333 4.42 0.00 45.72 3.08
5254 5382 9.396022 GGATGAGATTGACTTCAATAAACCTAA 57.604 33.333 4.42 0.00 45.72 2.69
5262 5390 9.679661 TTGACTTCAATAAACCTAATATGCAGA 57.320 29.630 0.00 0.00 0.00 4.26
5263 5391 9.330063 TGACTTCAATAAACCTAATATGCAGAG 57.670 33.333 0.00 0.00 0.00 3.35
5264 5392 9.331282 GACTTCAATAAACCTAATATGCAGAGT 57.669 33.333 0.00 0.00 0.00 3.24
5273 5401 8.507524 AACCTAATATGCAGAGTAAAAAGGAC 57.492 34.615 2.56 0.00 0.00 3.85
5274 5402 7.054751 ACCTAATATGCAGAGTAAAAAGGACC 58.945 38.462 2.56 0.00 0.00 4.46
5275 5403 6.202954 CCTAATATGCAGAGTAAAAAGGACCG 59.797 42.308 0.00 0.00 0.00 4.79
5276 5404 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
5277 5405 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
5278 5406 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
5279 5407 2.289506 GCAGAGTAAAAAGGACCGGAGT 60.290 50.000 9.46 0.00 0.00 3.85
5280 5408 3.806157 GCAGAGTAAAAAGGACCGGAGTT 60.806 47.826 9.46 0.00 0.00 3.01
5281 5409 4.562143 GCAGAGTAAAAAGGACCGGAGTTA 60.562 45.833 9.46 0.00 0.00 2.24
5282 5410 5.169295 CAGAGTAAAAAGGACCGGAGTTAG 58.831 45.833 9.46 0.00 0.00 2.34
5283 5411 4.837298 AGAGTAAAAAGGACCGGAGTTAGT 59.163 41.667 9.46 0.00 0.00 2.24
5284 5412 6.012745 AGAGTAAAAAGGACCGGAGTTAGTA 58.987 40.000 9.46 0.00 0.00 1.82
5285 5413 6.030548 AGTAAAAAGGACCGGAGTTAGTAC 57.969 41.667 9.46 2.03 0.00 2.73
5323 5454 8.485578 TTTTCCCCATAACAGTTCTGTATTTT 57.514 30.769 5.87 0.00 0.00 1.82
5366 5497 5.836821 AACTGAAGGTCCTTGAGAAAAAC 57.163 39.130 23.28 0.66 29.71 2.43
5374 5507 5.767168 AGGTCCTTGAGAAAAACATTCTCTG 59.233 40.000 16.55 10.53 43.91 3.35
5389 5522 5.424252 ACATTCTCTGTATTTCTTACCGGGA 59.576 40.000 6.32 0.00 35.91 5.14
5414 5547 8.608844 ACGATAACTCTGAAAAGAAATGTTCT 57.391 30.769 0.00 0.00 43.15 3.01
5416 5549 8.171840 CGATAACTCTGAAAAGAAATGTTCTCC 58.828 37.037 0.00 0.00 39.61 3.71
5417 5550 6.641169 AACTCTGAAAAGAAATGTTCTCCC 57.359 37.500 0.00 0.00 39.61 4.30
5419 5552 7.079451 ACTCTGAAAAGAAATGTTCTCCCTA 57.921 36.000 0.00 0.00 39.61 3.53
5421 5554 7.826744 ACTCTGAAAAGAAATGTTCTCCCTATC 59.173 37.037 0.00 0.00 39.61 2.08
5440 5574 7.014230 TCCCTATCTTTTCTTTTGAAACTGGTG 59.986 37.037 0.00 0.00 46.80 4.17
5441 5575 7.201911 CCCTATCTTTTCTTTTGAAACTGGTGT 60.202 37.037 0.00 0.00 46.80 4.16
5444 5578 8.926715 ATCTTTTCTTTTGAAACTGGTGTAAC 57.073 30.769 0.00 0.00 46.80 2.50
5445 5579 7.024768 TCTTTTCTTTTGAAACTGGTGTAACG 58.975 34.615 0.00 0.00 46.80 3.18
5446 5580 4.281525 TCTTTTGAAACTGGTGTAACGC 57.718 40.909 0.00 0.00 38.12 4.84
5468 5774 0.739462 CGAGCACTTGCCCGATAACA 60.739 55.000 0.00 0.00 45.33 2.41
5509 5815 3.564235 TGACAGCTCGTTTACGTGTAT 57.436 42.857 0.00 0.00 40.80 2.29
5521 5827 2.172851 ACGTGTATCCCTCGCAAAAA 57.827 45.000 0.00 0.00 33.48 1.94
5555 5867 9.394477 GTTCAAATCTGGACAATTTAACAGTAC 57.606 33.333 0.00 0.00 30.47 2.73
5561 5873 9.787435 ATCTGGACAATTTAACAGTACTTGTAA 57.213 29.630 0.00 0.00 39.73 2.41
5562 5874 9.616156 TCTGGACAATTTAACAGTACTTGTAAA 57.384 29.630 9.22 9.22 39.73 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.299279 TCTTCATCAACCAAAACTCAAGACC 59.701 40.000 0.00 0.00 0.00 3.85
3 4 6.154445 CCATCTTCATCAACCAAAACTCAAG 58.846 40.000 0.00 0.00 0.00 3.02
4 5 5.010922 CCCATCTTCATCAACCAAAACTCAA 59.989 40.000 0.00 0.00 0.00 3.02
5 6 4.523943 CCCATCTTCATCAACCAAAACTCA 59.476 41.667 0.00 0.00 0.00 3.41
6 7 4.619160 GCCCATCTTCATCAACCAAAACTC 60.619 45.833 0.00 0.00 0.00 3.01
7 8 3.259123 GCCCATCTTCATCAACCAAAACT 59.741 43.478 0.00 0.00 0.00 2.66
8 9 3.588955 GCCCATCTTCATCAACCAAAAC 58.411 45.455 0.00 0.00 0.00 2.43
9 10 2.566724 GGCCCATCTTCATCAACCAAAA 59.433 45.455 0.00 0.00 0.00 2.44
10 11 2.178580 GGCCCATCTTCATCAACCAAA 58.821 47.619 0.00 0.00 0.00 3.28
11 12 1.851304 GGCCCATCTTCATCAACCAA 58.149 50.000 0.00 0.00 0.00 3.67
12 13 0.394216 CGGCCCATCTTCATCAACCA 60.394 55.000 0.00 0.00 0.00 3.67
13 14 0.394352 ACGGCCCATCTTCATCAACC 60.394 55.000 0.00 0.00 0.00 3.77
14 15 1.940613 GTACGGCCCATCTTCATCAAC 59.059 52.381 0.00 0.00 0.00 3.18
15 16 1.134220 GGTACGGCCCATCTTCATCAA 60.134 52.381 0.00 0.00 0.00 2.57
16 17 0.468226 GGTACGGCCCATCTTCATCA 59.532 55.000 0.00 0.00 0.00 3.07
17 18 0.468226 TGGTACGGCCCATCTTCATC 59.532 55.000 0.00 0.00 36.04 2.92
18 19 0.469917 CTGGTACGGCCCATCTTCAT 59.530 55.000 0.00 0.00 36.04 2.57
19 20 1.622607 CCTGGTACGGCCCATCTTCA 61.623 60.000 0.00 0.00 36.04 3.02
20 21 1.146263 CCTGGTACGGCCCATCTTC 59.854 63.158 0.00 0.00 36.04 2.87
21 22 3.043999 GCCTGGTACGGCCCATCTT 62.044 63.158 0.00 0.00 40.94 2.40
22 23 3.480133 GCCTGGTACGGCCCATCT 61.480 66.667 0.00 0.00 40.94 2.90
63 64 1.970114 CAGACTTGCCTGCCTGTGG 60.970 63.158 0.00 0.00 0.00 4.17
64 65 1.970114 CCAGACTTGCCTGCCTGTG 60.970 63.158 0.00 0.00 32.97 3.66
65 66 2.433446 CCAGACTTGCCTGCCTGT 59.567 61.111 0.00 0.00 32.97 4.00
66 67 1.841302 TACCCAGACTTGCCTGCCTG 61.841 60.000 0.00 0.00 32.97 4.85
67 68 1.133809 TTACCCAGACTTGCCTGCCT 61.134 55.000 0.00 0.00 32.97 4.75
68 69 0.960861 GTTACCCAGACTTGCCTGCC 60.961 60.000 0.00 0.00 32.97 4.85
69 70 0.960861 GGTTACCCAGACTTGCCTGC 60.961 60.000 0.00 0.00 32.97 4.85
70 71 0.322546 GGGTTACCCAGACTTGCCTG 60.323 60.000 16.81 0.00 44.65 4.85
71 72 2.075837 GGGTTACCCAGACTTGCCT 58.924 57.895 16.81 0.00 44.65 4.75
72 73 4.736739 GGGTTACCCAGACTTGCC 57.263 61.111 16.81 0.00 44.65 4.52
82 83 1.345415 TGTTCTGAGAACGGGGTTACC 59.655 52.381 19.31 0.00 0.00 2.85
83 84 2.410939 GTGTTCTGAGAACGGGGTTAC 58.589 52.381 19.31 7.97 0.00 2.50
84 85 1.345415 GGTGTTCTGAGAACGGGGTTA 59.655 52.381 19.31 0.00 0.00 2.85
85 86 0.108019 GGTGTTCTGAGAACGGGGTT 59.892 55.000 19.31 0.00 0.00 4.11
86 87 1.752833 GGTGTTCTGAGAACGGGGT 59.247 57.895 19.31 0.00 0.00 4.95
87 88 1.374252 CGGTGTTCTGAGAACGGGG 60.374 63.158 19.31 7.71 0.00 5.73
88 89 0.666577 GTCGGTGTTCTGAGAACGGG 60.667 60.000 19.31 11.33 28.91 5.28
89 90 0.031585 TGTCGGTGTTCTGAGAACGG 59.968 55.000 19.31 11.66 28.91 4.44
90 91 1.521423 GTTGTCGGTGTTCTGAGAACG 59.479 52.381 19.31 8.87 41.18 3.95
91 92 2.540101 CTGTTGTCGGTGTTCTGAGAAC 59.460 50.000 18.01 18.01 46.64 3.01
92 93 2.483013 CCTGTTGTCGGTGTTCTGAGAA 60.483 50.000 0.00 0.00 31.23 2.87
93 94 1.068588 CCTGTTGTCGGTGTTCTGAGA 59.931 52.381 0.00 0.00 0.00 3.27
94 95 1.202533 ACCTGTTGTCGGTGTTCTGAG 60.203 52.381 0.00 0.00 32.41 3.35
95 96 0.828022 ACCTGTTGTCGGTGTTCTGA 59.172 50.000 0.00 0.00 32.41 3.27
96 97 0.937304 CACCTGTTGTCGGTGTTCTG 59.063 55.000 1.16 0.00 45.36 3.02
97 98 3.379650 CACCTGTTGTCGGTGTTCT 57.620 52.632 1.16 0.00 45.36 3.01
102 103 2.508928 CCACCACCTGTTGTCGGT 59.491 61.111 0.00 0.00 34.38 4.69
103 104 2.978010 GCCACCACCTGTTGTCGG 60.978 66.667 0.00 0.00 0.00 4.79
104 105 3.345808 CGCCACCACCTGTTGTCG 61.346 66.667 0.00 0.00 0.00 4.35
105 106 3.660111 GCGCCACCACCTGTTGTC 61.660 66.667 0.00 0.00 0.00 3.18
106 107 4.189580 AGCGCCACCACCTGTTGT 62.190 61.111 2.29 0.00 0.00 3.32
107 108 3.663176 CAGCGCCACCACCTGTTG 61.663 66.667 2.29 0.00 0.00 3.33
108 109 4.189580 ACAGCGCCACCACCTGTT 62.190 61.111 2.29 0.00 36.48 3.16
109 110 4.626081 GACAGCGCCACCACCTGT 62.626 66.667 2.29 0.00 42.10 4.00
112 113 4.722700 ATGGACAGCGCCACCACC 62.723 66.667 17.56 9.30 41.56 4.61
113 114 3.434319 CATGGACAGCGCCACCAC 61.434 66.667 17.56 0.29 41.56 4.16
114 115 3.952508 ACATGGACAGCGCCACCA 61.953 61.111 17.53 17.53 41.56 4.17
115 116 3.434319 CACATGGACAGCGCCACC 61.434 66.667 2.29 5.91 41.56 4.61
116 117 4.107051 GCACATGGACAGCGCCAC 62.107 66.667 2.29 0.00 41.56 5.01
117 118 4.639906 TGCACATGGACAGCGCCA 62.640 61.111 2.29 0.00 43.23 5.69
118 119 3.807538 CTGCACATGGACAGCGCC 61.808 66.667 2.29 0.00 0.00 6.53
119 120 3.807538 CCTGCACATGGACAGCGC 61.808 66.667 0.00 0.00 32.37 5.92
120 121 2.046988 TCCTGCACATGGACAGCG 60.047 61.111 10.82 5.82 32.37 5.18
121 122 1.748122 CCTCCTGCACATGGACAGC 60.748 63.158 10.82 3.72 32.37 4.40
122 123 0.675837 CACCTCCTGCACATGGACAG 60.676 60.000 9.62 9.62 0.00 3.51
123 124 1.376086 CACCTCCTGCACATGGACA 59.624 57.895 0.00 0.00 0.00 4.02
124 125 2.042831 GCACCTCCTGCACATGGAC 61.043 63.158 0.00 0.00 46.29 4.02
125 126 2.352422 GCACCTCCTGCACATGGA 59.648 61.111 0.00 0.00 46.29 3.41
133 134 0.249868 TTCACTCGTTGCACCTCCTG 60.250 55.000 0.00 0.00 0.00 3.86
134 135 0.468226 TTTCACTCGTTGCACCTCCT 59.532 50.000 0.00 0.00 0.00 3.69
135 136 1.305201 TTTTCACTCGTTGCACCTCC 58.695 50.000 0.00 0.00 0.00 4.30
152 153 0.840288 GGCCTGGGGTGGGAATTTTT 60.840 55.000 0.00 0.00 0.00 1.94
153 154 1.229496 GGCCTGGGGTGGGAATTTT 60.229 57.895 0.00 0.00 0.00 1.82
154 155 2.042279 TTGGCCTGGGGTGGGAATTT 62.042 55.000 3.32 0.00 0.00 1.82
155 156 2.042279 TTTGGCCTGGGGTGGGAATT 62.042 55.000 3.32 0.00 0.00 2.17
156 157 2.460476 CTTTGGCCTGGGGTGGGAAT 62.460 60.000 3.32 0.00 0.00 3.01
157 158 3.113477 TTTGGCCTGGGGTGGGAA 61.113 61.111 3.32 0.00 0.00 3.97
158 159 3.589542 CTTTGGCCTGGGGTGGGA 61.590 66.667 3.32 0.00 0.00 4.37
159 160 3.466803 AACTTTGGCCTGGGGTGGG 62.467 63.158 3.32 0.00 0.00 4.61
160 161 1.908299 GAACTTTGGCCTGGGGTGG 60.908 63.158 3.32 0.00 0.00 4.61
161 162 0.895559 GAGAACTTTGGCCTGGGGTG 60.896 60.000 3.32 0.00 0.00 4.61
162 163 1.460699 GAGAACTTTGGCCTGGGGT 59.539 57.895 3.32 0.00 0.00 4.95
163 164 1.675641 CGAGAACTTTGGCCTGGGG 60.676 63.158 3.32 0.00 0.00 4.96
164 165 2.335712 GCGAGAACTTTGGCCTGGG 61.336 63.158 3.32 0.00 0.00 4.45
165 166 2.335712 GGCGAGAACTTTGGCCTGG 61.336 63.158 3.32 0.00 42.29 4.45
166 167 2.680913 CGGCGAGAACTTTGGCCTG 61.681 63.158 0.00 0.00 43.38 4.85
167 168 2.358737 CGGCGAGAACTTTGGCCT 60.359 61.111 0.00 0.00 43.38 5.19
168 169 3.431725 CCGGCGAGAACTTTGGCC 61.432 66.667 9.30 0.00 42.14 5.36
169 170 4.103103 GCCGGCGAGAACTTTGGC 62.103 66.667 12.58 0.00 35.04 4.52
170 171 2.668212 TGCCGGCGAGAACTTTGG 60.668 61.111 23.90 0.00 0.00 3.28
171 172 2.863153 CTGCCGGCGAGAACTTTG 59.137 61.111 23.90 0.00 0.00 2.77
172 173 3.050275 GCTGCCGGCGAGAACTTT 61.050 61.111 23.90 0.00 0.00 2.66
211 212 1.801178 GTCGTTGAGCCTTTCAAGAGG 59.199 52.381 0.00 0.00 46.09 3.69
212 213 1.457303 CGTCGTTGAGCCTTTCAAGAG 59.543 52.381 0.00 0.00 46.09 2.85
213 214 1.497991 CGTCGTTGAGCCTTTCAAGA 58.502 50.000 0.00 0.00 46.09 3.02
214 215 0.512952 CCGTCGTTGAGCCTTTCAAG 59.487 55.000 0.00 0.00 46.09 3.02
215 216 0.105224 TCCGTCGTTGAGCCTTTCAA 59.895 50.000 0.00 0.00 43.40 2.69
216 217 0.105224 TTCCGTCGTTGAGCCTTTCA 59.895 50.000 0.00 0.00 0.00 2.69
217 218 0.790814 CTTCCGTCGTTGAGCCTTTC 59.209 55.000 0.00 0.00 0.00 2.62
218 219 0.391597 TCTTCCGTCGTTGAGCCTTT 59.608 50.000 0.00 0.00 0.00 3.11
219 220 0.608640 ATCTTCCGTCGTTGAGCCTT 59.391 50.000 0.00 0.00 0.00 4.35
220 221 1.134560 GTATCTTCCGTCGTTGAGCCT 59.865 52.381 0.00 0.00 0.00 4.58
221 222 1.134560 AGTATCTTCCGTCGTTGAGCC 59.865 52.381 0.00 0.00 0.00 4.70
222 223 2.452105 GAGTATCTTCCGTCGTTGAGC 58.548 52.381 0.00 0.00 0.00 4.26
236 237 7.729431 AGTGGATAGGTAGGGTTTTAGAGTATC 59.271 40.741 0.00 0.00 0.00 2.24
237 238 7.602868 AGTGGATAGGTAGGGTTTTAGAGTAT 58.397 38.462 0.00 0.00 0.00 2.12
238 239 6.989894 AGTGGATAGGTAGGGTTTTAGAGTA 58.010 40.000 0.00 0.00 0.00 2.59
239 240 5.851418 AGTGGATAGGTAGGGTTTTAGAGT 58.149 41.667 0.00 0.00 0.00 3.24
240 241 7.201983 GGTTAGTGGATAGGTAGGGTTTTAGAG 60.202 44.444 0.00 0.00 0.00 2.43
241 242 6.612863 GGTTAGTGGATAGGTAGGGTTTTAGA 59.387 42.308 0.00 0.00 0.00 2.10
242 243 6.462067 CGGTTAGTGGATAGGTAGGGTTTTAG 60.462 46.154 0.00 0.00 0.00 1.85
243 244 5.363580 CGGTTAGTGGATAGGTAGGGTTTTA 59.636 44.000 0.00 0.00 0.00 1.52
244 245 4.162888 CGGTTAGTGGATAGGTAGGGTTTT 59.837 45.833 0.00 0.00 0.00 2.43
245 246 3.708121 CGGTTAGTGGATAGGTAGGGTTT 59.292 47.826 0.00 0.00 0.00 3.27
246 247 3.052642 TCGGTTAGTGGATAGGTAGGGTT 60.053 47.826 0.00 0.00 0.00 4.11
247 248 2.515429 TCGGTTAGTGGATAGGTAGGGT 59.485 50.000 0.00 0.00 0.00 4.34
248 249 2.889678 GTCGGTTAGTGGATAGGTAGGG 59.110 54.545 0.00 0.00 0.00 3.53
249 250 2.889678 GGTCGGTTAGTGGATAGGTAGG 59.110 54.545 0.00 0.00 0.00 3.18
250 251 2.551459 CGGTCGGTTAGTGGATAGGTAG 59.449 54.545 0.00 0.00 0.00 3.18
251 252 2.172505 TCGGTCGGTTAGTGGATAGGTA 59.827 50.000 0.00 0.00 0.00 3.08
252 253 1.064463 TCGGTCGGTTAGTGGATAGGT 60.064 52.381 0.00 0.00 0.00 3.08
253 254 1.607628 CTCGGTCGGTTAGTGGATAGG 59.392 57.143 0.00 0.00 0.00 2.57
254 255 1.607628 CCTCGGTCGGTTAGTGGATAG 59.392 57.143 0.00 0.00 0.00 2.08
255 256 1.683943 CCTCGGTCGGTTAGTGGATA 58.316 55.000 0.00 0.00 0.00 2.59
256 257 1.673808 GCCTCGGTCGGTTAGTGGAT 61.674 60.000 0.00 0.00 0.00 3.41
257 258 2.345760 GCCTCGGTCGGTTAGTGGA 61.346 63.158 0.00 0.00 0.00 4.02
258 259 1.956629 ATGCCTCGGTCGGTTAGTGG 61.957 60.000 0.00 0.00 0.00 4.00
259 260 0.527817 GATGCCTCGGTCGGTTAGTG 60.528 60.000 0.00 0.00 0.00 2.74
260 261 0.968901 TGATGCCTCGGTCGGTTAGT 60.969 55.000 0.00 0.00 0.00 2.24
261 262 0.174845 TTGATGCCTCGGTCGGTTAG 59.825 55.000 0.00 0.00 0.00 2.34
262 263 0.609151 TTTGATGCCTCGGTCGGTTA 59.391 50.000 0.00 0.00 0.00 2.85
263 264 0.250553 TTTTGATGCCTCGGTCGGTT 60.251 50.000 0.00 0.00 0.00 4.44
264 265 0.250553 TTTTTGATGCCTCGGTCGGT 60.251 50.000 0.00 0.00 0.00 4.69
265 266 0.168128 GTTTTTGATGCCTCGGTCGG 59.832 55.000 0.00 0.00 0.00 4.79
266 267 1.135972 CAGTTTTTGATGCCTCGGTCG 60.136 52.381 0.00 0.00 0.00 4.79
267 268 1.401539 GCAGTTTTTGATGCCTCGGTC 60.402 52.381 0.00 0.00 36.41 4.79
268 269 0.598065 GCAGTTTTTGATGCCTCGGT 59.402 50.000 0.00 0.00 36.41 4.69
269 270 0.883833 AGCAGTTTTTGATGCCTCGG 59.116 50.000 0.00 0.00 43.60 4.63
270 271 1.808945 AGAGCAGTTTTTGATGCCTCG 59.191 47.619 0.00 0.00 43.60 4.63
271 272 3.930634 AAGAGCAGTTTTTGATGCCTC 57.069 42.857 0.00 0.00 43.60 4.70
272 273 4.677673 AAAAGAGCAGTTTTTGATGCCT 57.322 36.364 0.00 0.00 43.60 4.75
273 274 5.406477 CCTAAAAAGAGCAGTTTTTGATGCC 59.594 40.000 15.41 0.00 43.60 4.40
274 275 5.107337 GCCTAAAAAGAGCAGTTTTTGATGC 60.107 40.000 15.41 11.82 39.43 3.91
275 276 6.218746 AGCCTAAAAAGAGCAGTTTTTGATG 58.781 36.000 15.41 7.57 39.43 3.07
276 277 6.410942 AGCCTAAAAAGAGCAGTTTTTGAT 57.589 33.333 15.41 0.78 39.43 2.57
277 278 5.505654 CGAGCCTAAAAAGAGCAGTTTTTGA 60.506 40.000 15.41 0.00 39.43 2.69
278 279 4.676924 CGAGCCTAAAAAGAGCAGTTTTTG 59.323 41.667 15.41 6.53 39.43 2.44
279 280 4.261614 CCGAGCCTAAAAAGAGCAGTTTTT 60.262 41.667 11.96 11.96 41.43 1.94
280 281 3.253432 CCGAGCCTAAAAAGAGCAGTTTT 59.747 43.478 0.00 0.00 33.00 2.43
281 282 2.814336 CCGAGCCTAAAAAGAGCAGTTT 59.186 45.455 0.00 0.00 0.00 2.66
282 283 2.427506 CCGAGCCTAAAAAGAGCAGTT 58.572 47.619 0.00 0.00 0.00 3.16
283 284 1.339151 CCCGAGCCTAAAAAGAGCAGT 60.339 52.381 0.00 0.00 0.00 4.40
284 285 1.373570 CCCGAGCCTAAAAAGAGCAG 58.626 55.000 0.00 0.00 0.00 4.24
285 286 0.676782 GCCCGAGCCTAAAAAGAGCA 60.677 55.000 0.00 0.00 0.00 4.26
286 287 2.099143 GCCCGAGCCTAAAAAGAGC 58.901 57.895 0.00 0.00 0.00 4.09
297 298 1.814169 CGGAAAAGTAGGCCCGAGC 60.814 63.158 0.00 0.00 44.29 5.03
298 299 0.036671 AACGGAAAAGTAGGCCCGAG 60.037 55.000 0.00 0.00 44.29 4.63
299 300 0.397564 AAACGGAAAAGTAGGCCCGA 59.602 50.000 0.00 0.00 44.29 5.14
300 301 1.241165 AAAACGGAAAAGTAGGCCCG 58.759 50.000 0.00 0.00 46.65 6.13
333 334 4.577246 CTACGCTCGAGCCTGGCC 62.577 72.222 30.66 6.06 37.91 5.36
334 335 3.518998 TCTACGCTCGAGCCTGGC 61.519 66.667 30.66 11.65 37.91 4.85
335 336 1.658686 AAGTCTACGCTCGAGCCTGG 61.659 60.000 30.66 21.06 37.91 4.45
336 337 0.171455 AAAGTCTACGCTCGAGCCTG 59.829 55.000 30.66 20.19 37.91 4.85
337 338 0.171455 CAAAGTCTACGCTCGAGCCT 59.829 55.000 30.66 21.86 37.91 4.58
338 339 1.414527 GCAAAGTCTACGCTCGAGCC 61.415 60.000 30.66 16.60 37.91 4.70
339 340 1.414527 GGCAAAGTCTACGCTCGAGC 61.415 60.000 27.64 27.64 37.78 5.03
340 341 0.802607 GGGCAAAGTCTACGCTCGAG 60.803 60.000 8.45 8.45 0.00 4.04
341 342 1.214589 GGGCAAAGTCTACGCTCGA 59.785 57.895 0.00 0.00 0.00 4.04
342 343 2.158959 CGGGCAAAGTCTACGCTCG 61.159 63.158 1.67 1.67 44.06 5.03
343 344 1.077089 GACGGGCAAAGTCTACGCTC 61.077 60.000 0.00 0.00 35.84 5.03
344 345 1.080025 GACGGGCAAAGTCTACGCT 60.080 57.895 0.00 0.00 35.84 5.07
345 346 2.442188 CGACGGGCAAAGTCTACGC 61.442 63.158 5.68 0.00 36.53 4.42
346 347 1.804326 CCGACGGGCAAAGTCTACG 60.804 63.158 5.81 0.00 36.53 3.51
347 348 1.447314 CCCGACGGGCAAAGTCTAC 60.447 63.158 22.37 0.00 35.35 2.59
348 349 2.652095 CCCCGACGGGCAAAGTCTA 61.652 63.158 28.37 0.00 44.50 2.59
349 350 4.016706 CCCCGACGGGCAAAGTCT 62.017 66.667 28.37 0.00 44.50 3.24
377 378 4.101448 CCTCAGGCCAGGTTCGGG 62.101 72.222 5.01 0.00 0.00 5.14
378 379 1.915078 ATTCCTCAGGCCAGGTTCGG 61.915 60.000 5.01 0.00 34.76 4.30
379 380 0.745845 CATTCCTCAGGCCAGGTTCG 60.746 60.000 5.01 0.00 34.76 3.95
380 381 1.034292 GCATTCCTCAGGCCAGGTTC 61.034 60.000 5.01 0.00 34.76 3.62
381 382 1.000396 GCATTCCTCAGGCCAGGTT 60.000 57.895 5.01 0.00 34.76 3.50
382 383 2.679716 GCATTCCTCAGGCCAGGT 59.320 61.111 5.01 0.00 34.76 4.00
383 384 2.123982 GGCATTCCTCAGGCCAGG 60.124 66.667 5.01 3.57 46.92 4.45
387 388 2.123982 CCTGGGCATTCCTCAGGC 60.124 66.667 6.10 0.00 41.04 4.85
389 390 2.648059 CTAAACCTGGGCATTCCTCAG 58.352 52.381 0.00 0.00 36.20 3.35
390 391 1.340991 GCTAAACCTGGGCATTCCTCA 60.341 52.381 0.00 0.00 36.20 3.86
391 392 1.393603 GCTAAACCTGGGCATTCCTC 58.606 55.000 0.00 0.00 36.20 3.71
392 393 0.033109 GGCTAAACCTGGGCATTCCT 60.033 55.000 0.00 0.00 36.20 3.36
393 394 0.324275 TGGCTAAACCTGGGCATTCC 60.324 55.000 0.00 0.00 40.22 3.01
394 395 0.817654 GTGGCTAAACCTGGGCATTC 59.182 55.000 0.00 0.00 40.78 2.67
395 396 0.965363 CGTGGCTAAACCTGGGCATT 60.965 55.000 0.00 0.00 40.78 3.56
396 397 1.378514 CGTGGCTAAACCTGGGCAT 60.379 57.895 0.00 0.00 40.78 4.40
397 398 2.033448 CGTGGCTAAACCTGGGCA 59.967 61.111 0.00 0.00 40.22 5.36
398 399 2.750237 CCGTGGCTAAACCTGGGC 60.750 66.667 0.00 0.00 40.22 5.36
399 400 2.750237 GCCGTGGCTAAACCTGGG 60.750 66.667 2.98 0.00 40.22 4.45
400 401 2.033448 TGCCGTGGCTAAACCTGG 59.967 61.111 12.84 0.00 42.51 4.45
401 402 0.036765 TACTGCCGTGGCTAAACCTG 60.037 55.000 12.84 0.00 42.51 4.00
402 403 0.036671 GTACTGCCGTGGCTAAACCT 60.037 55.000 12.84 0.00 42.51 3.50
403 404 0.036671 AGTACTGCCGTGGCTAAACC 60.037 55.000 12.84 0.00 42.51 3.27
404 405 1.076332 CAGTACTGCCGTGGCTAAAC 58.924 55.000 10.54 7.14 42.51 2.01
405 406 3.525619 CAGTACTGCCGTGGCTAAA 57.474 52.632 10.54 0.00 42.51 1.85
464 465 2.774774 GCTCTGTTTCTGCTCGCG 59.225 61.111 0.00 0.00 0.00 5.87
468 469 2.740055 CGGCGCTCTGTTTCTGCT 60.740 61.111 7.64 0.00 0.00 4.24
596 598 1.152989 CCGTGTGTTTTTCCGTCGGA 61.153 55.000 10.71 10.71 38.96 4.55
662 671 1.254975 GCACCGGGGCTGGTAATTTT 61.255 55.000 24.98 0.00 41.38 1.82
701 710 1.611977 CCCTGGAAAAAGGTCGGTTTC 59.388 52.381 0.00 0.00 35.34 2.78
730 739 7.148289 CGGGAAATTTAGGAAGTAGACTTTTCC 60.148 40.741 9.72 9.72 42.56 3.13
739 748 4.103627 GGGGATCGGGAAATTTAGGAAGTA 59.896 45.833 0.00 0.00 0.00 2.24
892 901 1.271656 CCAACGGATCCGAGGGTATAC 59.728 57.143 39.55 0.00 42.83 1.47
897 906 4.891727 CGCCAACGGATCCGAGGG 62.892 72.222 39.55 34.59 42.83 4.30
1136 1145 9.136952 GGTACTATTTCGTATAACTTATGCCAG 57.863 37.037 0.00 0.00 0.00 4.85
1289 1298 7.065923 GGTAAAAGGAACTACTTTATGCTCCTG 59.934 40.741 0.00 0.00 38.49 3.86
1321 1330 7.633193 ACTAATCTGAGTCTGTAGTACCAAG 57.367 40.000 0.00 0.00 0.00 3.61
1376 1385 1.412710 AGGTTCGAGAAGCTCACAACA 59.587 47.619 11.29 0.00 44.95 3.33
1580 1589 2.670251 TGCCCGGCCAAGTTTACG 60.670 61.111 7.03 0.00 0.00 3.18
1806 1818 1.607801 CCAAGGGCTAGGCAAAAGGC 61.608 60.000 19.14 0.00 43.74 4.35
1816 1828 1.879575 ATCTGCAGTACCAAGGGCTA 58.120 50.000 14.67 0.00 0.00 3.93
1997 2009 3.007940 AGCCTGCAAGTACTCATAACACA 59.992 43.478 0.00 0.00 0.00 3.72
2327 2340 3.893720 CTGAAATCAGCAACAGGACAAC 58.106 45.455 0.00 0.00 37.15 3.32
2643 2658 2.190578 GGCCCAGGTTCTCCATCG 59.809 66.667 0.00 0.00 35.89 3.84
2748 2763 1.608283 GGTCCCCACTTTGACGAAGAG 60.608 57.143 9.54 1.14 38.77 2.85
3204 3222 4.751767 AATCAGGAGCAAGGAGTAAGAG 57.248 45.455 0.00 0.00 0.00 2.85
3371 3391 2.034124 GGTATTGGGCACATGAGCAAT 58.966 47.619 17.11 10.94 35.83 3.56
3423 3443 6.472163 AGTGCGATGTTTTAGTTCAAAGTTTG 59.528 34.615 9.44 9.44 0.00 2.93
3442 3462 3.250744 CTCAGTTCGGAAATAAGTGCGA 58.749 45.455 0.00 0.00 39.77 5.10
3655 3675 1.281419 TCTCCATAGCCCGGTGAAAA 58.719 50.000 0.00 0.00 0.00 2.29
3665 3685 8.462016 ACAACTGATTAAACAAATCTCCATAGC 58.538 33.333 0.02 0.00 43.83 2.97
3685 3705 1.162698 CATGCCAGAGTGGACAACTG 58.837 55.000 0.00 0.00 40.96 3.16
3731 3751 2.700371 AGGTGGCGATCATACATTCTGA 59.300 45.455 0.00 0.00 0.00 3.27
4103 4123 4.137116 TGGATTTGACAATACCCTCTCG 57.863 45.455 8.15 0.00 0.00 4.04
4126 4146 6.724694 TTGCCTTTTCAATTTCATGCATAC 57.275 33.333 0.00 0.00 0.00 2.39
4211 4231 1.570501 AGCAAGCCTTTCCCCATCATA 59.429 47.619 0.00 0.00 0.00 2.15
4330 4350 3.805971 CACTTTCGCTATCTGATGCATCA 59.194 43.478 27.10 27.10 35.16 3.07
4544 4672 6.681729 TGAAGACTGGTTAGTGAAATAGGT 57.318 37.500 0.00 0.00 37.25 3.08
4650 4778 7.446625 GGCAATCTTCCAACATACTTCTCATAT 59.553 37.037 0.00 0.00 0.00 1.78
4960 5088 4.672801 GCATAGGAGAGGCAAAGAAAAACG 60.673 45.833 0.00 0.00 34.07 3.60
4972 5100 0.031857 CTCAGTGCGCATAGGAGAGG 59.968 60.000 23.37 5.86 0.00 3.69
4974 5102 1.186200 AACTCAGTGCGCATAGGAGA 58.814 50.000 30.11 17.15 0.00 3.71
5031 5159 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
5032 5160 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
5033 5161 1.804748 GTGCAGAGTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
5034 5162 2.489971 TGTGCAGAGTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
5035 5163 4.321230 CCAATGTGCAGAGTAAAAAGGACC 60.321 45.833 0.00 0.00 0.00 4.46
5036 5164 4.518970 TCCAATGTGCAGAGTAAAAAGGAC 59.481 41.667 0.00 0.00 0.00 3.85
5037 5165 4.724399 TCCAATGTGCAGAGTAAAAAGGA 58.276 39.130 0.00 0.00 0.00 3.36
5038 5166 5.649782 ATCCAATGTGCAGAGTAAAAAGG 57.350 39.130 0.00 0.00 0.00 3.11
5039 5167 6.128742 GCAAATCCAATGTGCAGAGTAAAAAG 60.129 38.462 0.00 0.00 38.19 2.27
5040 5168 5.695816 GCAAATCCAATGTGCAGAGTAAAAA 59.304 36.000 0.00 0.00 38.19 1.94
5041 5169 5.229423 GCAAATCCAATGTGCAGAGTAAAA 58.771 37.500 0.00 0.00 38.19 1.52
5042 5170 4.321899 GGCAAATCCAATGTGCAGAGTAAA 60.322 41.667 4.59 0.00 40.12 2.01
5043 5171 3.193267 GGCAAATCCAATGTGCAGAGTAA 59.807 43.478 4.59 0.00 40.12 2.24
5044 5172 2.754552 GGCAAATCCAATGTGCAGAGTA 59.245 45.455 4.59 0.00 40.12 2.59
5045 5173 1.547372 GGCAAATCCAATGTGCAGAGT 59.453 47.619 4.59 0.00 40.12 3.24
5046 5174 1.468565 CGGCAAATCCAATGTGCAGAG 60.469 52.381 4.59 0.00 40.12 3.35
5047 5175 0.527113 CGGCAAATCCAATGTGCAGA 59.473 50.000 4.59 0.00 40.12 4.26
5048 5176 0.527113 TCGGCAAATCCAATGTGCAG 59.473 50.000 4.59 0.65 40.12 4.41
5049 5177 0.964700 TTCGGCAAATCCAATGTGCA 59.035 45.000 4.59 0.00 40.12 4.57
5050 5178 1.994779 CTTTCGGCAAATCCAATGTGC 59.005 47.619 0.00 0.00 37.55 4.57
5051 5179 3.244976 GACTTTCGGCAAATCCAATGTG 58.755 45.455 0.00 0.00 34.01 3.21
5052 5180 2.890311 TGACTTTCGGCAAATCCAATGT 59.110 40.909 0.00 0.00 34.01 2.71
5053 5181 3.574284 TGACTTTCGGCAAATCCAATG 57.426 42.857 0.00 0.00 34.01 2.82
5054 5182 4.039124 AGTTTGACTTTCGGCAAATCCAAT 59.961 37.500 0.00 0.00 36.51 3.16
5055 5183 3.383185 AGTTTGACTTTCGGCAAATCCAA 59.617 39.130 0.00 0.00 36.51 3.53
5056 5184 2.955660 AGTTTGACTTTCGGCAAATCCA 59.044 40.909 0.00 0.00 36.51 3.41
5057 5185 3.643159 AGTTTGACTTTCGGCAAATCC 57.357 42.857 0.00 0.00 36.51 3.01
5058 5186 4.617223 GCTAAGTTTGACTTTCGGCAAATC 59.383 41.667 0.00 0.00 39.51 2.17
5059 5187 4.278419 AGCTAAGTTTGACTTTCGGCAAAT 59.722 37.500 0.00 0.00 39.51 2.32
5060 5188 3.630312 AGCTAAGTTTGACTTTCGGCAAA 59.370 39.130 0.00 0.00 39.51 3.68
5061 5189 3.211045 AGCTAAGTTTGACTTTCGGCAA 58.789 40.909 0.00 0.00 39.51 4.52
5062 5190 2.846193 AGCTAAGTTTGACTTTCGGCA 58.154 42.857 0.00 0.00 39.51 5.69
5063 5191 4.451435 ACTTAGCTAAGTTTGACTTTCGGC 59.549 41.667 29.48 2.73 43.57 5.54
5152 5280 9.610705 CCAATATCATTAGATTCATCTCGGAAT 57.389 33.333 0.00 0.00 40.10 3.01
5153 5281 8.597167 ACCAATATCATTAGATTCATCTCGGAA 58.403 33.333 0.00 0.00 38.32 4.30
5154 5282 8.037166 CACCAATATCATTAGATTCATCTCGGA 58.963 37.037 0.00 0.00 38.32 4.55
5155 5283 7.821359 ACACCAATATCATTAGATTCATCTCGG 59.179 37.037 0.00 0.00 38.32 4.63
5156 5284 8.768957 ACACCAATATCATTAGATTCATCTCG 57.231 34.615 0.00 0.00 38.32 4.04
5158 5286 9.857656 ACAACACCAATATCATTAGATTCATCT 57.142 29.630 0.00 0.00 40.86 2.90
5215 5343 5.474532 TCAATCTCATCCAACTTTGACCAAG 59.525 40.000 0.00 0.00 38.64 3.61
5216 5344 5.241506 GTCAATCTCATCCAACTTTGACCAA 59.758 40.000 0.00 0.00 37.86 3.67
5217 5345 4.761739 GTCAATCTCATCCAACTTTGACCA 59.238 41.667 0.00 0.00 37.86 4.02
5218 5346 5.006386 AGTCAATCTCATCCAACTTTGACC 58.994 41.667 9.31 0.00 42.29 4.02
5219 5347 6.205464 TGAAGTCAATCTCATCCAACTTTGAC 59.795 38.462 5.67 5.67 41.88 3.18
5220 5348 6.298361 TGAAGTCAATCTCATCCAACTTTGA 58.702 36.000 0.00 0.00 0.00 2.69
5221 5349 6.564709 TGAAGTCAATCTCATCCAACTTTG 57.435 37.500 0.00 0.00 0.00 2.77
5222 5350 7.771927 ATTGAAGTCAATCTCATCCAACTTT 57.228 32.000 0.54 0.00 42.45 2.66
5223 5351 8.868522 TTATTGAAGTCAATCTCATCCAACTT 57.131 30.769 9.76 0.00 44.67 2.66
5224 5352 8.734386 GTTTATTGAAGTCAATCTCATCCAACT 58.266 33.333 9.76 0.00 44.67 3.16
5225 5353 7.970614 GGTTTATTGAAGTCAATCTCATCCAAC 59.029 37.037 9.76 4.22 44.67 3.77
5226 5354 7.890127 AGGTTTATTGAAGTCAATCTCATCCAA 59.110 33.333 9.76 0.00 44.67 3.53
5227 5355 7.405292 AGGTTTATTGAAGTCAATCTCATCCA 58.595 34.615 9.76 0.00 44.67 3.41
5228 5356 7.872113 AGGTTTATTGAAGTCAATCTCATCC 57.128 36.000 9.76 7.40 44.67 3.51
5236 5364 9.679661 TCTGCATATTAGGTTTATTGAAGTCAA 57.320 29.630 0.00 0.00 40.51 3.18
5237 5365 9.330063 CTCTGCATATTAGGTTTATTGAAGTCA 57.670 33.333 0.00 0.00 0.00 3.41
5238 5366 9.331282 ACTCTGCATATTAGGTTTATTGAAGTC 57.669 33.333 0.00 0.00 0.00 3.01
5247 5375 8.957466 GTCCTTTTTACTCTGCATATTAGGTTT 58.043 33.333 0.00 0.00 0.00 3.27
5248 5376 7.556635 GGTCCTTTTTACTCTGCATATTAGGTT 59.443 37.037 0.00 0.00 0.00 3.50
5249 5377 7.054751 GGTCCTTTTTACTCTGCATATTAGGT 58.945 38.462 0.00 0.00 0.00 3.08
5250 5378 6.202954 CGGTCCTTTTTACTCTGCATATTAGG 59.797 42.308 0.00 0.00 0.00 2.69
5251 5379 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
5252 5380 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
5253 5381 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
5254 5382 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
5255 5383 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
5256 5384 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
5257 5385 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
5258 5386 2.289506 ACTCCGGTCCTTTTTACTCTGC 60.290 50.000 0.00 0.00 0.00 4.26
5259 5387 3.679824 ACTCCGGTCCTTTTTACTCTG 57.320 47.619 0.00 0.00 0.00 3.35
5260 5388 4.837298 ACTAACTCCGGTCCTTTTTACTCT 59.163 41.667 0.00 0.00 0.00 3.24
5261 5389 5.144692 ACTAACTCCGGTCCTTTTTACTC 57.855 43.478 0.00 0.00 0.00 2.59
5262 5390 5.539955 TGTACTAACTCCGGTCCTTTTTACT 59.460 40.000 0.00 0.00 0.00 2.24
5263 5391 5.783111 TGTACTAACTCCGGTCCTTTTTAC 58.217 41.667 0.00 0.00 0.00 2.01
5264 5392 6.418057 TTGTACTAACTCCGGTCCTTTTTA 57.582 37.500 0.00 0.00 0.00 1.52
5265 5393 4.961438 TGTACTAACTCCGGTCCTTTTT 57.039 40.909 0.00 0.00 0.00 1.94
5266 5394 4.961438 TTGTACTAACTCCGGTCCTTTT 57.039 40.909 0.00 0.00 0.00 2.27
5267 5395 4.961438 TTTGTACTAACTCCGGTCCTTT 57.039 40.909 0.00 0.00 0.00 3.11
5268 5396 4.961438 TTTTGTACTAACTCCGGTCCTT 57.039 40.909 0.00 0.00 0.00 3.36
5269 5397 6.610075 TTATTTTGTACTAACTCCGGTCCT 57.390 37.500 0.00 0.00 0.00 3.85
5270 5398 6.820152 ACATTATTTTGTACTAACTCCGGTCC 59.180 38.462 0.00 0.00 0.00 4.46
5271 5399 7.838771 ACATTATTTTGTACTAACTCCGGTC 57.161 36.000 0.00 0.00 0.00 4.79
5272 5400 9.895138 AATACATTATTTTGTACTAACTCCGGT 57.105 29.630 0.00 0.00 35.04 5.28
5302 5430 5.949354 TCCAAAATACAGAACTGTTATGGGG 59.051 40.000 18.25 9.87 41.83 4.96
5366 5497 5.753921 GTCCCGGTAAGAAATACAGAGAATG 59.246 44.000 0.00 0.00 36.14 2.67
5374 5507 5.836347 AGTTATCGTCCCGGTAAGAAATAC 58.164 41.667 0.00 0.00 32.99 1.89
5389 5522 8.608844 AGAACATTTCTTTTCAGAGTTATCGT 57.391 30.769 0.00 0.00 36.36 3.73
5414 5547 7.014230 CACCAGTTTCAAAAGAAAAGATAGGGA 59.986 37.037 0.00 0.00 0.00 4.20
5416 5549 7.716612 ACACCAGTTTCAAAAGAAAAGATAGG 58.283 34.615 0.00 0.00 0.00 2.57
5419 5552 7.700656 CGTTACACCAGTTTCAAAAGAAAAGAT 59.299 33.333 0.00 0.00 0.00 2.40
5421 5554 6.237463 GCGTTACACCAGTTTCAAAAGAAAAG 60.237 38.462 0.00 0.00 0.00 2.27
5440 5574 3.110178 AAGTGCTCGCCGCGTTAC 61.110 61.111 13.39 10.22 43.27 2.50
5441 5575 3.109547 CAAGTGCTCGCCGCGTTA 61.110 61.111 13.39 0.00 43.27 3.18
5527 5833 9.349713 ACTGTTAAATTGTCCAGATTTGAACTA 57.650 29.630 5.74 0.00 0.00 2.24
5528 5834 8.237811 ACTGTTAAATTGTCCAGATTTGAACT 57.762 30.769 5.74 0.00 0.00 3.01
5529 5835 9.394477 GTACTGTTAAATTGTCCAGATTTGAAC 57.606 33.333 5.74 0.00 0.00 3.18
5532 5844 9.398170 CAAGTACTGTTAAATTGTCCAGATTTG 57.602 33.333 0.00 4.14 0.00 2.32
5564 5876 8.993121 GCTTACATGTTCTGTAGCACATATAAT 58.007 33.333 2.30 0.00 41.30 1.28
5574 5886 2.167693 TCCCCGCTTACATGTTCTGTAG 59.832 50.000 2.30 0.00 41.30 2.74
5579 5891 2.143925 GCTATCCCCGCTTACATGTTC 58.856 52.381 2.30 0.00 0.00 3.18
5581 5893 1.344763 GAGCTATCCCCGCTTACATGT 59.655 52.381 2.69 2.69 37.96 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.