Multiple sequence alignment - TraesCS5A01G265700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G265700 | chr5A | 100.000 | 3266 | 0 | 0 | 1 | 3266 | 477438444 | 477435179 | 0.000000e+00 | 6032.0 |
1 | TraesCS5A01G265700 | chr5A | 100.000 | 170 | 0 | 0 | 3670 | 3839 | 477434775 | 477434606 | 8.010000e-82 | 315.0 |
2 | TraesCS5A01G265700 | chr5A | 85.393 | 89 | 12 | 1 | 1 | 89 | 377127371 | 377127284 | 1.470000e-14 | 91.6 |
3 | TraesCS5A01G265700 | chr5D | 96.137 | 3003 | 73 | 15 | 276 | 3266 | 376665171 | 376662200 | 0.000000e+00 | 4863.0 |
4 | TraesCS5A01G265700 | chr5D | 92.029 | 138 | 11 | 0 | 3680 | 3817 | 376662147 | 376662010 | 1.090000e-45 | 195.0 |
5 | TraesCS5A01G265700 | chr5D | 86.364 | 88 | 11 | 1 | 1 | 88 | 416418449 | 416418535 | 1.140000e-15 | 95.3 |
6 | TraesCS5A01G265700 | chr5D | 85.057 | 87 | 12 | 1 | 3 | 89 | 27353888 | 27353973 | 1.900000e-13 | 87.9 |
7 | TraesCS5A01G265700 | chr5D | 84.270 | 89 | 13 | 1 | 1 | 89 | 164604881 | 164604968 | 6.830000e-13 | 86.1 |
8 | TraesCS5A01G265700 | chr5D | 85.294 | 68 | 5 | 3 | 132 | 199 | 558270628 | 558270690 | 8.900000e-07 | 65.8 |
9 | TraesCS5A01G265700 | chr5B | 94.784 | 3010 | 109 | 16 | 276 | 3266 | 449753304 | 449750324 | 0.000000e+00 | 4645.0 |
10 | TraesCS5A01G265700 | chr5B | 96.377 | 138 | 4 | 1 | 3680 | 3817 | 449750271 | 449750135 | 3.860000e-55 | 226.0 |
11 | TraesCS5A01G265700 | chr7D | 79.771 | 786 | 151 | 3 | 1070 | 1854 | 213374623 | 213375401 | 7.200000e-157 | 564.0 |
12 | TraesCS5A01G265700 | chr7B | 79.771 | 786 | 151 | 3 | 1070 | 1854 | 188604230 | 188603452 | 7.200000e-157 | 564.0 |
13 | TraesCS5A01G265700 | chr7A | 79.644 | 786 | 152 | 3 | 1070 | 1854 | 224987659 | 224988437 | 3.350000e-155 | 558.0 |
14 | TraesCS5A01G265700 | chr1A | 88.889 | 81 | 3 | 4 | 131 | 206 | 454330130 | 454330209 | 1.140000e-15 | 95.3 |
15 | TraesCS5A01G265700 | chr1A | 84.270 | 89 | 14 | 0 | 1 | 89 | 155857825 | 155857737 | 1.900000e-13 | 87.9 |
16 | TraesCS5A01G265700 | chr1A | 100.000 | 36 | 0 | 0 | 133 | 168 | 12556180 | 12556215 | 2.480000e-07 | 67.6 |
17 | TraesCS5A01G265700 | chr4B | 85.393 | 89 | 12 | 1 | 1 | 89 | 142518944 | 142518857 | 1.470000e-14 | 91.6 |
18 | TraesCS5A01G265700 | chr4B | 84.270 | 89 | 14 | 0 | 1 | 89 | 487272928 | 487273016 | 1.900000e-13 | 87.9 |
19 | TraesCS5A01G265700 | chr2D | 85.393 | 89 | 12 | 1 | 1 | 89 | 14768283 | 14768370 | 1.470000e-14 | 91.6 |
20 | TraesCS5A01G265700 | chr2D | 90.278 | 72 | 3 | 3 | 134 | 201 | 347465712 | 347465783 | 1.470000e-14 | 91.6 |
21 | TraesCS5A01G265700 | chr6D | 84.270 | 89 | 14 | 0 | 1 | 89 | 303059972 | 303059884 | 1.900000e-13 | 87.9 |
22 | TraesCS5A01G265700 | chr6D | 100.000 | 36 | 0 | 0 | 133 | 168 | 27848393 | 27848358 | 2.480000e-07 | 67.6 |
23 | TraesCS5A01G265700 | chr6B | 88.000 | 75 | 8 | 1 | 134 | 208 | 14541140 | 14541067 | 1.900000e-13 | 87.9 |
24 | TraesCS5A01G265700 | chr1B | 100.000 | 37 | 0 | 0 | 132 | 168 | 17642917 | 17642881 | 6.880000e-08 | 69.4 |
25 | TraesCS5A01G265700 | chr3D | 97.368 | 38 | 1 | 0 | 131 | 168 | 608961863 | 608961900 | 8.900000e-07 | 65.8 |
26 | TraesCS5A01G265700 | chr3D | 97.297 | 37 | 1 | 0 | 171 | 207 | 119423003 | 119423039 | 3.200000e-06 | 63.9 |
27 | TraesCS5A01G265700 | chr1D | 88.462 | 52 | 3 | 3 | 119 | 168 | 44612200 | 44612250 | 4.140000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G265700 | chr5A | 477434606 | 477438444 | 3838 | True | 3173.5 | 6032 | 100.0000 | 1 | 3839 | 2 | chr5A.!!$R2 | 3838 |
1 | TraesCS5A01G265700 | chr5D | 376662010 | 376665171 | 3161 | True | 2529.0 | 4863 | 94.0830 | 276 | 3817 | 2 | chr5D.!!$R1 | 3541 |
2 | TraesCS5A01G265700 | chr5B | 449750135 | 449753304 | 3169 | True | 2435.5 | 4645 | 95.5805 | 276 | 3817 | 2 | chr5B.!!$R1 | 3541 |
3 | TraesCS5A01G265700 | chr7D | 213374623 | 213375401 | 778 | False | 564.0 | 564 | 79.7710 | 1070 | 1854 | 1 | chr7D.!!$F1 | 784 |
4 | TraesCS5A01G265700 | chr7B | 188603452 | 188604230 | 778 | True | 564.0 | 564 | 79.7710 | 1070 | 1854 | 1 | chr7B.!!$R1 | 784 |
5 | TraesCS5A01G265700 | chr7A | 224987659 | 224988437 | 778 | False | 558.0 | 558 | 79.6440 | 1070 | 1854 | 1 | chr7A.!!$F1 | 784 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
375 | 384 | 0.460311 | AAATACACGAGCGGAGGAGG | 59.540 | 55.0 | 0.0 | 0.0 | 0.00 | 4.30 | F |
1359 | 1379 | 0.037447 | AGAAAGGGAAGCCTGTGAGC | 59.963 | 55.0 | 0.0 | 0.0 | 0.00 | 4.26 | F |
1953 | 1973 | 0.946221 | ACGCACAGAGCAGCAGTAAC | 60.946 | 55.0 | 0.0 | 0.0 | 46.13 | 2.50 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1865 | 1885 | 0.243365 | GACGCCATTGTCAATGCCAA | 59.757 | 50.000 | 18.52 | 0.0 | 38.75 | 4.52 | R |
2651 | 2671 | 3.045634 | TCTCCAGGGACAGAAGTTGAAA | 58.954 | 45.455 | 0.00 | 0.0 | 0.00 | 2.69 | R |
3052 | 3072 | 3.332919 | GGCATGCTACAGATGGTATCAG | 58.667 | 50.000 | 18.92 | 0.0 | 32.12 | 2.90 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
47 | 48 | 9.814899 | ATGAATTAAAATGAGTGAACAAACACA | 57.185 | 25.926 | 0.00 | 0.00 | 42.45 | 3.72 |
48 | 49 | 9.081997 | TGAATTAAAATGAGTGAACAAACACAC | 57.918 | 29.630 | 0.00 | 0.00 | 42.45 | 3.82 |
54 | 55 | 9.651913 | AAAATGAGTGAACAAACACACTAAAAT | 57.348 | 25.926 | 0.00 | 0.00 | 45.54 | 1.82 |
55 | 56 | 8.633075 | AATGAGTGAACAAACACACTAAAATG | 57.367 | 30.769 | 0.00 | 0.00 | 45.54 | 2.32 |
56 | 57 | 7.151999 | TGAGTGAACAAACACACTAAAATGT | 57.848 | 32.000 | 0.00 | 0.00 | 45.54 | 2.71 |
67 | 68 | 6.239908 | CACACTAAAATGTGTCTACATGCA | 57.760 | 37.500 | 0.00 | 0.00 | 46.90 | 3.96 |
68 | 69 | 6.845302 | CACACTAAAATGTGTCTACATGCAT | 58.155 | 36.000 | 0.00 | 0.00 | 46.90 | 3.96 |
69 | 70 | 6.963242 | CACACTAAAATGTGTCTACATGCATC | 59.037 | 38.462 | 0.00 | 0.00 | 46.90 | 3.91 |
70 | 71 | 6.881065 | ACACTAAAATGTGTCTACATGCATCT | 59.119 | 34.615 | 0.00 | 0.00 | 46.90 | 2.90 |
71 | 72 | 8.040727 | ACACTAAAATGTGTCTACATGCATCTA | 58.959 | 33.333 | 0.00 | 0.00 | 46.90 | 1.98 |
72 | 73 | 8.882736 | CACTAAAATGTGTCTACATGCATCTAA | 58.117 | 33.333 | 0.00 | 0.00 | 46.54 | 2.10 |
73 | 74 | 9.618890 | ACTAAAATGTGTCTACATGCATCTAAT | 57.381 | 29.630 | 0.00 | 0.00 | 46.54 | 1.73 |
76 | 77 | 8.510243 | AAATGTGTCTACATGCATCTAATTCA | 57.490 | 30.769 | 0.00 | 0.00 | 46.54 | 2.57 |
77 | 78 | 7.725818 | ATGTGTCTACATGCATCTAATTCAG | 57.274 | 36.000 | 0.00 | 0.00 | 45.54 | 3.02 |
78 | 79 | 6.877236 | TGTGTCTACATGCATCTAATTCAGA | 58.123 | 36.000 | 0.00 | 0.00 | 37.79 | 3.27 |
79 | 80 | 7.330262 | TGTGTCTACATGCATCTAATTCAGAA | 58.670 | 34.615 | 0.00 | 0.00 | 36.67 | 3.02 |
80 | 81 | 7.823799 | TGTGTCTACATGCATCTAATTCAGAAA | 59.176 | 33.333 | 0.00 | 0.00 | 36.67 | 2.52 |
81 | 82 | 8.668353 | GTGTCTACATGCATCTAATTCAGAAAA | 58.332 | 33.333 | 0.00 | 0.00 | 36.67 | 2.29 |
82 | 83 | 8.668353 | TGTCTACATGCATCTAATTCAGAAAAC | 58.332 | 33.333 | 0.00 | 0.00 | 36.67 | 2.43 |
83 | 84 | 8.668353 | GTCTACATGCATCTAATTCAGAAAACA | 58.332 | 33.333 | 0.00 | 0.00 | 36.67 | 2.83 |
84 | 85 | 9.230122 | TCTACATGCATCTAATTCAGAAAACAA | 57.770 | 29.630 | 0.00 | 0.00 | 36.67 | 2.83 |
85 | 86 | 9.499585 | CTACATGCATCTAATTCAGAAAACAAG | 57.500 | 33.333 | 0.00 | 0.00 | 36.67 | 3.16 |
86 | 87 | 7.889469 | ACATGCATCTAATTCAGAAAACAAGT | 58.111 | 30.769 | 0.00 | 0.00 | 36.67 | 3.16 |
87 | 88 | 8.362639 | ACATGCATCTAATTCAGAAAACAAGTT | 58.637 | 29.630 | 0.00 | 0.00 | 36.67 | 2.66 |
88 | 89 | 9.844790 | CATGCATCTAATTCAGAAAACAAGTTA | 57.155 | 29.630 | 0.00 | 0.00 | 36.67 | 2.24 |
90 | 91 | 9.844790 | TGCATCTAATTCAGAAAACAAGTTATG | 57.155 | 29.630 | 0.00 | 0.00 | 36.67 | 1.90 |
91 | 92 | 9.846248 | GCATCTAATTCAGAAAACAAGTTATGT | 57.154 | 29.630 | 0.00 | 0.00 | 39.66 | 2.29 |
100 | 101 | 9.554395 | TCAGAAAACAAGTTATGTAGAATGTCA | 57.446 | 29.630 | 0.00 | 0.00 | 42.99 | 3.58 |
110 | 111 | 9.965824 | AGTTATGTAGAATGTCAAAACAAAAGG | 57.034 | 29.630 | 0.00 | 0.00 | 39.30 | 3.11 |
111 | 112 | 9.959749 | GTTATGTAGAATGTCAAAACAAAAGGA | 57.040 | 29.630 | 0.00 | 0.00 | 39.30 | 3.36 |
113 | 114 | 7.639113 | TGTAGAATGTCAAAACAAAAGGAGT | 57.361 | 32.000 | 0.00 | 0.00 | 39.30 | 3.85 |
114 | 115 | 8.740123 | TGTAGAATGTCAAAACAAAAGGAGTA | 57.260 | 30.769 | 0.00 | 0.00 | 39.30 | 2.59 |
115 | 116 | 8.617809 | TGTAGAATGTCAAAACAAAAGGAGTAC | 58.382 | 33.333 | 0.00 | 0.00 | 39.30 | 2.73 |
116 | 117 | 7.039313 | AGAATGTCAAAACAAAAGGAGTACC | 57.961 | 36.000 | 0.00 | 0.00 | 39.30 | 3.34 |
117 | 118 | 6.833933 | AGAATGTCAAAACAAAAGGAGTACCT | 59.166 | 34.615 | 0.00 | 0.00 | 43.26 | 3.08 |
118 | 119 | 6.635030 | ATGTCAAAACAAAAGGAGTACCTC | 57.365 | 37.500 | 0.00 | 0.00 | 41.68 | 3.85 |
119 | 120 | 5.502079 | TGTCAAAACAAAAGGAGTACCTCA | 58.498 | 37.500 | 0.00 | 0.00 | 37.80 | 3.86 |
120 | 121 | 6.126409 | TGTCAAAACAAAAGGAGTACCTCAT | 58.874 | 36.000 | 0.00 | 0.00 | 37.80 | 2.90 |
121 | 122 | 7.284074 | TGTCAAAACAAAAGGAGTACCTCATA | 58.716 | 34.615 | 0.00 | 0.00 | 37.80 | 2.15 |
122 | 123 | 7.942341 | TGTCAAAACAAAAGGAGTACCTCATAT | 59.058 | 33.333 | 0.00 | 0.00 | 37.80 | 1.78 |
139 | 140 | 8.196378 | ACCTCATATAATCAAGTCTTACTCCC | 57.804 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
140 | 141 | 8.013667 | ACCTCATATAATCAAGTCTTACTCCCT | 58.986 | 37.037 | 0.00 | 0.00 | 0.00 | 4.20 |
141 | 142 | 8.527810 | CCTCATATAATCAAGTCTTACTCCCTC | 58.472 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
142 | 143 | 8.423906 | TCATATAATCAAGTCTTACTCCCTCC | 57.576 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
143 | 144 | 5.793030 | ATAATCAAGTCTTACTCCCTCCG | 57.207 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
144 | 145 | 2.599408 | TCAAGTCTTACTCCCTCCGT | 57.401 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
145 | 146 | 3.726557 | TCAAGTCTTACTCCCTCCGTA | 57.273 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
146 | 147 | 4.038271 | TCAAGTCTTACTCCCTCCGTAA | 57.962 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
147 | 148 | 4.410099 | TCAAGTCTTACTCCCTCCGTAAA | 58.590 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
148 | 149 | 4.461781 | TCAAGTCTTACTCCCTCCGTAAAG | 59.538 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
149 | 150 | 4.313020 | AGTCTTACTCCCTCCGTAAAGA | 57.687 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
150 | 151 | 4.670765 | AGTCTTACTCCCTCCGTAAAGAA | 58.329 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
151 | 152 | 5.082425 | AGTCTTACTCCCTCCGTAAAGAAA | 58.918 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
152 | 153 | 5.720520 | AGTCTTACTCCCTCCGTAAAGAAAT | 59.279 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
153 | 154 | 6.894103 | AGTCTTACTCCCTCCGTAAAGAAATA | 59.106 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
154 | 155 | 7.564292 | AGTCTTACTCCCTCCGTAAAGAAATAT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
155 | 156 | 8.854117 | GTCTTACTCCCTCCGTAAAGAAATATA | 58.146 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
156 | 157 | 9.425248 | TCTTACTCCCTCCGTAAAGAAATATAA | 57.575 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
157 | 158 | 9.694137 | CTTACTCCCTCCGTAAAGAAATATAAG | 57.306 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
158 | 159 | 7.909485 | ACTCCCTCCGTAAAGAAATATAAGA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
159 | 160 | 8.315220 | ACTCCCTCCGTAAAGAAATATAAGAA | 57.685 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
160 | 161 | 8.202811 | ACTCCCTCCGTAAAGAAATATAAGAAC | 58.797 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
161 | 162 | 7.205297 | TCCCTCCGTAAAGAAATATAAGAACG | 58.795 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
162 | 163 | 6.982724 | CCCTCCGTAAAGAAATATAAGAACGT | 59.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.99 |
163 | 164 | 7.493645 | CCCTCCGTAAAGAAATATAAGAACGTT | 59.506 | 37.037 | 0.00 | 0.00 | 0.00 | 3.99 |
164 | 165 | 8.876790 | CCTCCGTAAAGAAATATAAGAACGTTT | 58.123 | 33.333 | 0.46 | 0.00 | 0.00 | 3.60 |
191 | 192 | 8.166706 | AGACAAACGCTTTTATATTTCTGTACG | 58.833 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
192 | 193 | 7.238571 | ACAAACGCTTTTATATTTCTGTACGG | 58.761 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
193 | 194 | 7.118101 | ACAAACGCTTTTATATTTCTGTACGGA | 59.882 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
194 | 195 | 6.823678 | ACGCTTTTATATTTCTGTACGGAG | 57.176 | 37.500 | 4.23 | 0.00 | 0.00 | 4.63 |
195 | 196 | 5.751990 | ACGCTTTTATATTTCTGTACGGAGG | 59.248 | 40.000 | 4.23 | 0.00 | 0.00 | 4.30 |
196 | 197 | 5.176958 | CGCTTTTATATTTCTGTACGGAGGG | 59.823 | 44.000 | 4.23 | 0.00 | 0.00 | 4.30 |
197 | 198 | 6.285990 | GCTTTTATATTTCTGTACGGAGGGA | 58.714 | 40.000 | 4.23 | 0.00 | 0.00 | 4.20 |
198 | 199 | 6.424207 | GCTTTTATATTTCTGTACGGAGGGAG | 59.576 | 42.308 | 4.23 | 0.00 | 0.00 | 4.30 |
199 | 200 | 7.427989 | TTTTATATTTCTGTACGGAGGGAGT | 57.572 | 36.000 | 4.23 | 0.00 | 0.00 | 3.85 |
200 | 201 | 8.537728 | TTTTATATTTCTGTACGGAGGGAGTA | 57.462 | 34.615 | 4.23 | 0.00 | 0.00 | 2.59 |
201 | 202 | 7.516198 | TTATATTTCTGTACGGAGGGAGTAC | 57.484 | 40.000 | 4.23 | 0.08 | 43.34 | 2.73 |
205 | 206 | 2.519771 | TGTACGGAGGGAGTACATGT | 57.480 | 50.000 | 2.69 | 2.69 | 46.38 | 3.21 |
206 | 207 | 2.811410 | TGTACGGAGGGAGTACATGTT | 58.189 | 47.619 | 2.30 | 0.00 | 46.38 | 2.71 |
207 | 208 | 3.966979 | TGTACGGAGGGAGTACATGTTA | 58.033 | 45.455 | 2.30 | 0.00 | 46.38 | 2.41 |
208 | 209 | 4.343231 | TGTACGGAGGGAGTACATGTTAA | 58.657 | 43.478 | 2.30 | 0.00 | 46.38 | 2.01 |
209 | 210 | 4.400251 | TGTACGGAGGGAGTACATGTTAAG | 59.600 | 45.833 | 2.30 | 0.00 | 46.38 | 1.85 |
210 | 211 | 3.438183 | ACGGAGGGAGTACATGTTAAGT | 58.562 | 45.455 | 2.30 | 0.00 | 0.00 | 2.24 |
211 | 212 | 3.194968 | ACGGAGGGAGTACATGTTAAGTG | 59.805 | 47.826 | 2.30 | 0.00 | 0.00 | 3.16 |
212 | 213 | 3.446161 | CGGAGGGAGTACATGTTAAGTGA | 59.554 | 47.826 | 2.30 | 0.00 | 0.00 | 3.41 |
213 | 214 | 4.081862 | CGGAGGGAGTACATGTTAAGTGAA | 60.082 | 45.833 | 2.30 | 0.00 | 0.00 | 3.18 |
214 | 215 | 5.395324 | CGGAGGGAGTACATGTTAAGTGAAT | 60.395 | 44.000 | 2.30 | 0.00 | 0.00 | 2.57 |
215 | 216 | 6.183360 | CGGAGGGAGTACATGTTAAGTGAATA | 60.183 | 42.308 | 2.30 | 0.00 | 0.00 | 1.75 |
216 | 217 | 7.562135 | GGAGGGAGTACATGTTAAGTGAATAA | 58.438 | 38.462 | 2.30 | 0.00 | 0.00 | 1.40 |
217 | 218 | 8.044908 | GGAGGGAGTACATGTTAAGTGAATAAA | 58.955 | 37.037 | 2.30 | 0.00 | 0.00 | 1.40 |
218 | 219 | 9.444600 | GAGGGAGTACATGTTAAGTGAATAAAA | 57.555 | 33.333 | 2.30 | 0.00 | 0.00 | 1.52 |
219 | 220 | 9.227777 | AGGGAGTACATGTTAAGTGAATAAAAC | 57.772 | 33.333 | 2.30 | 0.00 | 0.00 | 2.43 |
220 | 221 | 9.005777 | GGGAGTACATGTTAAGTGAATAAAACA | 57.994 | 33.333 | 2.30 | 0.00 | 36.37 | 2.83 |
226 | 227 | 9.950680 | ACATGTTAAGTGAATAAAACAAGTCTG | 57.049 | 29.630 | 0.00 | 0.00 | 35.63 | 3.51 |
229 | 230 | 9.997482 | TGTTAAGTGAATAAAACAAGTCTGAAC | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
230 | 231 | 9.997482 | GTTAAGTGAATAAAACAAGTCTGAACA | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
236 | 237 | 9.311916 | TGAATAAAACAAGTCTGAACATTTTGG | 57.688 | 29.630 | 0.00 | 0.00 | 0.00 | 3.28 |
237 | 238 | 9.313118 | GAATAAAACAAGTCTGAACATTTTGGT | 57.687 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
238 | 239 | 8.871686 | ATAAAACAAGTCTGAACATTTTGGTC | 57.128 | 30.769 | 0.00 | 0.00 | 33.88 | 4.02 |
239 | 240 | 6.530019 | AAACAAGTCTGAACATTTTGGTCT | 57.470 | 33.333 | 0.00 | 0.00 | 34.53 | 3.85 |
240 | 241 | 5.505173 | ACAAGTCTGAACATTTTGGTCTG | 57.495 | 39.130 | 0.00 | 0.00 | 34.53 | 3.51 |
241 | 242 | 4.949856 | ACAAGTCTGAACATTTTGGTCTGT | 59.050 | 37.500 | 0.00 | 0.00 | 34.53 | 3.41 |
242 | 243 | 6.119536 | ACAAGTCTGAACATTTTGGTCTGTA | 58.880 | 36.000 | 0.00 | 0.00 | 34.53 | 2.74 |
243 | 244 | 6.038271 | ACAAGTCTGAACATTTTGGTCTGTAC | 59.962 | 38.462 | 0.00 | 0.00 | 34.53 | 2.90 |
244 | 245 | 5.930135 | AGTCTGAACATTTTGGTCTGTACT | 58.070 | 37.500 | 0.00 | 0.00 | 34.53 | 2.73 |
245 | 246 | 7.062749 | AGTCTGAACATTTTGGTCTGTACTA | 57.937 | 36.000 | 0.00 | 0.00 | 34.53 | 1.82 |
246 | 247 | 7.155328 | AGTCTGAACATTTTGGTCTGTACTAG | 58.845 | 38.462 | 0.00 | 0.00 | 34.53 | 2.57 |
247 | 248 | 7.015292 | AGTCTGAACATTTTGGTCTGTACTAGA | 59.985 | 37.037 | 0.00 | 0.00 | 34.53 | 2.43 |
248 | 249 | 7.819900 | GTCTGAACATTTTGGTCTGTACTAGAT | 59.180 | 37.037 | 0.00 | 0.00 | 37.83 | 1.98 |
249 | 250 | 9.031537 | TCTGAACATTTTGGTCTGTACTAGATA | 57.968 | 33.333 | 0.00 | 0.00 | 37.83 | 1.98 |
250 | 251 | 8.997621 | TGAACATTTTGGTCTGTACTAGATAC | 57.002 | 34.615 | 0.00 | 0.00 | 37.83 | 2.24 |
251 | 252 | 8.590204 | TGAACATTTTGGTCTGTACTAGATACA | 58.410 | 33.333 | 0.00 | 0.94 | 41.79 | 2.29 |
268 | 269 | 8.612145 | ACTAGATACAGAAAATAGTTTTGGGGT | 58.388 | 33.333 | 0.00 | 0.00 | 31.94 | 4.95 |
269 | 270 | 7.703058 | AGATACAGAAAATAGTTTTGGGGTG | 57.297 | 36.000 | 0.00 | 0.00 | 31.94 | 4.61 |
270 | 271 | 7.238710 | AGATACAGAAAATAGTTTTGGGGTGT | 58.761 | 34.615 | 0.00 | 0.00 | 31.94 | 4.16 |
271 | 272 | 7.728532 | AGATACAGAAAATAGTTTTGGGGTGTT | 59.271 | 33.333 | 0.00 | 0.00 | 31.94 | 3.32 |
272 | 273 | 8.943594 | ATACAGAAAATAGTTTTGGGGTGTTA | 57.056 | 30.769 | 0.00 | 0.00 | 31.94 | 2.41 |
273 | 274 | 7.849322 | ACAGAAAATAGTTTTGGGGTGTTAT | 57.151 | 32.000 | 0.00 | 0.00 | 31.94 | 1.89 |
274 | 275 | 8.257602 | ACAGAAAATAGTTTTGGGGTGTTATT | 57.742 | 30.769 | 0.00 | 0.00 | 31.94 | 1.40 |
289 | 290 | 3.671459 | GTGTTATTAAACAACGCCTTGGC | 59.329 | 43.478 | 0.75 | 0.75 | 46.84 | 4.52 |
290 | 291 | 3.570550 | TGTTATTAAACAACGCCTTGGCT | 59.429 | 39.130 | 10.12 | 0.00 | 42.60 | 4.75 |
291 | 292 | 2.723124 | ATTAAACAACGCCTTGGCTG | 57.277 | 45.000 | 10.12 | 4.81 | 0.00 | 4.85 |
294 | 297 | 2.015227 | AAACAACGCCTTGGCTGTGG | 62.015 | 55.000 | 10.12 | 9.25 | 0.00 | 4.17 |
295 | 298 | 4.347453 | CAACGCCTTGGCTGTGGC | 62.347 | 66.667 | 10.12 | 6.03 | 45.25 | 5.01 |
332 | 335 | 1.095228 | CACAAGGCAGTTCACACGGT | 61.095 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
345 | 354 | 2.601666 | ACGGTGAGCAGGAGCAGA | 60.602 | 61.111 | 0.00 | 0.00 | 45.49 | 4.26 |
359 | 368 | 2.038295 | GGAGCAGAGGATCCGATGAAAT | 59.962 | 50.000 | 19.86 | 7.36 | 40.28 | 2.17 |
375 | 384 | 0.460311 | AAATACACGAGCGGAGGAGG | 59.540 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
376 | 385 | 0.683504 | AATACACGAGCGGAGGAGGT | 60.684 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
377 | 386 | 1.102222 | ATACACGAGCGGAGGAGGTC | 61.102 | 60.000 | 0.00 | 0.00 | 35.48 | 3.85 |
378 | 387 | 3.827898 | CACGAGCGGAGGAGGTCC | 61.828 | 72.222 | 0.00 | 0.00 | 42.85 | 4.46 |
408 | 417 | 2.952310 | GTTTGTTTGCTCTGTTCCTCCT | 59.048 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
446 | 455 | 1.900486 | TCCCTCGAGTTTCCTTCCTTC | 59.100 | 52.381 | 12.31 | 0.00 | 0.00 | 3.46 |
532 | 542 | 1.800681 | GAACCTGCGAATTTCCCCG | 59.199 | 57.895 | 0.00 | 0.00 | 0.00 | 5.73 |
533 | 543 | 0.958876 | GAACCTGCGAATTTCCCCGT | 60.959 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
534 | 544 | 0.958876 | AACCTGCGAATTTCCCCGTC | 60.959 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
535 | 545 | 2.461110 | CCTGCGAATTTCCCCGTCG | 61.461 | 63.158 | 0.00 | 0.00 | 37.82 | 5.12 |
548 | 559 | 1.143838 | CCGTCGCCAATCATCTCCA | 59.856 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
592 | 603 | 3.554342 | CGCCTCCTCCCCATCCAG | 61.554 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
726 | 738 | 0.736053 | CCTCCTCCGTCTTCTTCTCG | 59.264 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
834 | 854 | 2.928116 | GGTCCGATTAGGTTTGTCTTCG | 59.072 | 50.000 | 0.00 | 0.00 | 41.99 | 3.79 |
911 | 931 | 3.706855 | AAAAATGGCGGCGGGAAT | 58.293 | 50.000 | 9.78 | 0.00 | 0.00 | 3.01 |
938 | 958 | 1.443407 | CATGATTCCCTCGCTCGGT | 59.557 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
1144 | 1164 | 1.904990 | GAAGGACAGGGTCAGGCTCC | 61.905 | 65.000 | 0.00 | 0.00 | 33.68 | 4.70 |
1359 | 1379 | 0.037447 | AGAAAGGGAAGCCTGTGAGC | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1490 | 1510 | 3.238441 | CTCAGAGTAGCGTTGTCAAGAC | 58.762 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1755 | 1775 | 2.789409 | AGCACATGTCCCCTAACTTC | 57.211 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1865 | 1885 | 1.003003 | GAGAGAGGAAAGGCTTGTGCT | 59.997 | 52.381 | 0.00 | 1.65 | 39.59 | 4.40 |
1941 | 1961 | 2.386661 | ATGGAACTAGGAACGCACAG | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1953 | 1973 | 0.946221 | ACGCACAGAGCAGCAGTAAC | 60.946 | 55.000 | 0.00 | 0.00 | 46.13 | 2.50 |
2334 | 2354 | 4.700213 | ACAAGTGAAGCTTTACAACACAGT | 59.300 | 37.500 | 21.91 | 13.55 | 34.69 | 3.55 |
2651 | 2671 | 3.454719 | TCATGTGATTGGTGGTGGAAT | 57.545 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
2863 | 2883 | 8.613060 | ACATAGGTAATTTCATCACATAGCTG | 57.387 | 34.615 | 0.00 | 0.00 | 0.00 | 4.24 |
2864 | 2884 | 8.213679 | ACATAGGTAATTTCATCACATAGCTGT | 58.786 | 33.333 | 0.00 | 0.00 | 35.44 | 4.40 |
2865 | 2885 | 9.060347 | CATAGGTAATTTCATCACATAGCTGTT | 57.940 | 33.333 | 0.00 | 0.00 | 31.62 | 3.16 |
2866 | 2886 | 7.944729 | AGGTAATTTCATCACATAGCTGTTT | 57.055 | 32.000 | 0.00 | 0.00 | 31.62 | 2.83 |
2867 | 2887 | 7.989826 | AGGTAATTTCATCACATAGCTGTTTC | 58.010 | 34.615 | 0.00 | 0.00 | 31.62 | 2.78 |
2868 | 2888 | 7.831193 | AGGTAATTTCATCACATAGCTGTTTCT | 59.169 | 33.333 | 0.00 | 0.00 | 31.62 | 2.52 |
2869 | 2889 | 8.462016 | GGTAATTTCATCACATAGCTGTTTCTT | 58.538 | 33.333 | 0.00 | 0.00 | 31.62 | 2.52 |
2954 | 2974 | 3.203487 | TCCTTTTGGTTGTCAGGTTAGGT | 59.797 | 43.478 | 0.00 | 0.00 | 41.38 | 3.08 |
3052 | 3072 | 4.698583 | AAACTTCTCATTCTGATGCTGC | 57.301 | 40.909 | 0.00 | 0.00 | 33.14 | 5.25 |
3260 | 3280 | 4.041198 | TGAGATATGAATGCCATGCTCTCA | 59.959 | 41.667 | 13.36 | 13.36 | 44.31 | 3.27 |
3775 | 3795 | 9.825972 | AAAATTAAGTTCATTACTGTGTCATCG | 57.174 | 29.630 | 0.00 | 0.00 | 37.12 | 3.84 |
3802 | 3822 | 4.075963 | TGGTAGTTACACAGTGAAACCC | 57.924 | 45.455 | 7.81 | 0.00 | 37.80 | 4.11 |
3819 | 3839 | 5.476091 | AAACCCTTGTTTCTTGACAACAA | 57.524 | 34.783 | 0.00 | 0.00 | 40.68 | 2.83 |
3820 | 3840 | 4.450082 | ACCCTTGTTTCTTGACAACAAC | 57.550 | 40.909 | 0.00 | 0.00 | 38.84 | 3.32 |
3821 | 3841 | 3.829601 | ACCCTTGTTTCTTGACAACAACA | 59.170 | 39.130 | 4.67 | 4.67 | 38.84 | 3.33 |
3822 | 3842 | 4.282195 | ACCCTTGTTTCTTGACAACAACAA | 59.718 | 37.500 | 15.43 | 15.43 | 38.84 | 2.83 |
3823 | 3843 | 4.625311 | CCCTTGTTTCTTGACAACAACAAC | 59.375 | 41.667 | 13.45 | 3.30 | 38.84 | 3.32 |
3824 | 3844 | 5.226396 | CCTTGTTTCTTGACAACAACAACA | 58.774 | 37.500 | 13.45 | 5.28 | 38.84 | 3.33 |
3825 | 3845 | 5.694006 | CCTTGTTTCTTGACAACAACAACAA | 59.306 | 36.000 | 13.45 | 10.72 | 38.84 | 2.83 |
3826 | 3846 | 6.346518 | CCTTGTTTCTTGACAACAACAACAAC | 60.347 | 38.462 | 13.45 | 0.00 | 38.84 | 3.32 |
3827 | 3847 | 5.592054 | TGTTTCTTGACAACAACAACAACA | 58.408 | 33.333 | 5.93 | 0.00 | 34.20 | 3.33 |
3828 | 3848 | 6.042777 | TGTTTCTTGACAACAACAACAACAA | 58.957 | 32.000 | 5.93 | 0.00 | 34.20 | 2.83 |
3829 | 3849 | 6.019479 | TGTTTCTTGACAACAACAACAACAAC | 60.019 | 34.615 | 5.93 | 0.00 | 34.20 | 3.32 |
3830 | 3850 | 5.188327 | TCTTGACAACAACAACAACAACA | 57.812 | 34.783 | 0.00 | 0.00 | 32.27 | 3.33 |
3831 | 3851 | 5.592054 | TCTTGACAACAACAACAACAACAA | 58.408 | 33.333 | 0.00 | 0.00 | 32.27 | 2.83 |
3832 | 3852 | 5.460419 | TCTTGACAACAACAACAACAACAAC | 59.540 | 36.000 | 0.00 | 0.00 | 32.27 | 3.32 |
3833 | 3853 | 4.682787 | TGACAACAACAACAACAACAACA | 58.317 | 34.783 | 0.00 | 0.00 | 0.00 | 3.33 |
3834 | 3854 | 5.109210 | TGACAACAACAACAACAACAACAA | 58.891 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3835 | 3855 | 5.005779 | TGACAACAACAACAACAACAACAAC | 59.994 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3836 | 3856 | 4.870426 | ACAACAACAACAACAACAACAACA | 59.130 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
3837 | 3857 | 5.351465 | ACAACAACAACAACAACAACAACAA | 59.649 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3838 | 3858 | 6.128282 | ACAACAACAACAACAACAACAACAAA | 60.128 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 9.814899 | TGTGTTTGTTCACTCATTTTAATTCAT | 57.185 | 25.926 | 0.00 | 0.00 | 38.90 | 2.57 |
22 | 23 | 9.081997 | GTGTGTTTGTTCACTCATTTTAATTCA | 57.918 | 29.630 | 0.00 | 0.00 | 38.90 | 2.57 |
23 | 24 | 9.301153 | AGTGTGTTTGTTCACTCATTTTAATTC | 57.699 | 29.630 | 0.00 | 0.00 | 40.28 | 2.17 |
28 | 29 | 9.651913 | ATTTTAGTGTGTTTGTTCACTCATTTT | 57.348 | 25.926 | 1.08 | 0.00 | 42.77 | 1.82 |
29 | 30 | 9.086336 | CATTTTAGTGTGTTTGTTCACTCATTT | 57.914 | 29.630 | 1.08 | 0.00 | 42.77 | 2.32 |
30 | 31 | 8.250332 | ACATTTTAGTGTGTTTGTTCACTCATT | 58.750 | 29.630 | 1.08 | 0.00 | 42.77 | 2.57 |
31 | 32 | 7.701924 | CACATTTTAGTGTGTTTGTTCACTCAT | 59.298 | 33.333 | 1.08 | 0.00 | 43.43 | 2.90 |
32 | 33 | 7.026562 | CACATTTTAGTGTGTTTGTTCACTCA | 58.973 | 34.615 | 1.08 | 0.00 | 43.43 | 3.41 |
33 | 34 | 7.436536 | CACATTTTAGTGTGTTTGTTCACTC | 57.563 | 36.000 | 1.08 | 0.00 | 43.43 | 3.51 |
46 | 47 | 7.312657 | AGATGCATGTAGACACATTTTAGTG | 57.687 | 36.000 | 2.46 | 0.00 | 42.98 | 2.74 |
47 | 48 | 9.618890 | ATTAGATGCATGTAGACACATTTTAGT | 57.381 | 29.630 | 2.46 | 0.00 | 42.98 | 2.24 |
50 | 51 | 8.959548 | TGAATTAGATGCATGTAGACACATTTT | 58.040 | 29.630 | 2.46 | 0.00 | 42.98 | 1.82 |
51 | 52 | 8.510243 | TGAATTAGATGCATGTAGACACATTT | 57.490 | 30.769 | 2.46 | 0.00 | 42.98 | 2.32 |
52 | 53 | 7.989170 | TCTGAATTAGATGCATGTAGACACATT | 59.011 | 33.333 | 2.46 | 0.21 | 42.98 | 2.71 |
53 | 54 | 7.503549 | TCTGAATTAGATGCATGTAGACACAT | 58.496 | 34.615 | 2.46 | 0.00 | 46.58 | 3.21 |
54 | 55 | 6.877236 | TCTGAATTAGATGCATGTAGACACA | 58.123 | 36.000 | 2.46 | 3.27 | 39.52 | 3.72 |
55 | 56 | 7.776933 | TTCTGAATTAGATGCATGTAGACAC | 57.223 | 36.000 | 2.46 | 0.00 | 34.80 | 3.67 |
56 | 57 | 8.668353 | GTTTTCTGAATTAGATGCATGTAGACA | 58.332 | 33.333 | 2.46 | 5.35 | 34.80 | 3.41 |
57 | 58 | 8.668353 | TGTTTTCTGAATTAGATGCATGTAGAC | 58.332 | 33.333 | 2.46 | 0.65 | 34.80 | 2.59 |
58 | 59 | 8.791327 | TGTTTTCTGAATTAGATGCATGTAGA | 57.209 | 30.769 | 2.46 | 0.00 | 34.80 | 2.59 |
59 | 60 | 9.499585 | CTTGTTTTCTGAATTAGATGCATGTAG | 57.500 | 33.333 | 2.46 | 0.00 | 34.80 | 2.74 |
60 | 61 | 9.013229 | ACTTGTTTTCTGAATTAGATGCATGTA | 57.987 | 29.630 | 2.46 | 0.01 | 34.80 | 2.29 |
61 | 62 | 7.889469 | ACTTGTTTTCTGAATTAGATGCATGT | 58.111 | 30.769 | 2.46 | 1.37 | 34.80 | 3.21 |
62 | 63 | 8.752766 | AACTTGTTTTCTGAATTAGATGCATG | 57.247 | 30.769 | 2.46 | 0.00 | 34.80 | 4.06 |
64 | 65 | 9.844790 | CATAACTTGTTTTCTGAATTAGATGCA | 57.155 | 29.630 | 0.00 | 0.00 | 34.80 | 3.96 |
65 | 66 | 9.846248 | ACATAACTTGTTTTCTGAATTAGATGC | 57.154 | 29.630 | 0.00 | 0.00 | 33.74 | 3.91 |
74 | 75 | 9.554395 | TGACATTCTACATAACTTGTTTTCTGA | 57.446 | 29.630 | 0.00 | 0.00 | 39.87 | 3.27 |
84 | 85 | 9.965824 | CCTTTTGTTTTGACATTCTACATAACT | 57.034 | 29.630 | 0.00 | 0.00 | 32.33 | 2.24 |
85 | 86 | 9.959749 | TCCTTTTGTTTTGACATTCTACATAAC | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
87 | 88 | 9.349713 | ACTCCTTTTGTTTTGACATTCTACATA | 57.650 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
88 | 89 | 8.237811 | ACTCCTTTTGTTTTGACATTCTACAT | 57.762 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
89 | 90 | 7.639113 | ACTCCTTTTGTTTTGACATTCTACA | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 2.74 |
90 | 91 | 8.074370 | GGTACTCCTTTTGTTTTGACATTCTAC | 58.926 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
91 | 92 | 7.996644 | AGGTACTCCTTTTGTTTTGACATTCTA | 59.003 | 33.333 | 0.00 | 0.00 | 42.12 | 2.10 |
92 | 93 | 6.833933 | AGGTACTCCTTTTGTTTTGACATTCT | 59.166 | 34.615 | 0.00 | 0.00 | 42.12 | 2.40 |
93 | 94 | 7.039313 | AGGTACTCCTTTTGTTTTGACATTC | 57.961 | 36.000 | 0.00 | 0.00 | 42.12 | 2.67 |
113 | 114 | 9.310449 | GGGAGTAAGACTTGATTATATGAGGTA | 57.690 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
114 | 115 | 8.013667 | AGGGAGTAAGACTTGATTATATGAGGT | 58.986 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
115 | 116 | 8.429237 | AGGGAGTAAGACTTGATTATATGAGG | 57.571 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
116 | 117 | 8.527810 | GGAGGGAGTAAGACTTGATTATATGAG | 58.472 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
117 | 118 | 7.176865 | CGGAGGGAGTAAGACTTGATTATATGA | 59.823 | 40.741 | 0.00 | 0.00 | 0.00 | 2.15 |
118 | 119 | 7.039644 | ACGGAGGGAGTAAGACTTGATTATATG | 60.040 | 40.741 | 0.00 | 0.00 | 0.00 | 1.78 |
119 | 120 | 7.011382 | ACGGAGGGAGTAAGACTTGATTATAT | 58.989 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
120 | 121 | 6.371278 | ACGGAGGGAGTAAGACTTGATTATA | 58.629 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
121 | 122 | 5.209659 | ACGGAGGGAGTAAGACTTGATTAT | 58.790 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
122 | 123 | 4.607239 | ACGGAGGGAGTAAGACTTGATTA | 58.393 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
123 | 124 | 3.442076 | ACGGAGGGAGTAAGACTTGATT | 58.558 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
124 | 125 | 3.103080 | ACGGAGGGAGTAAGACTTGAT | 57.897 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
125 | 126 | 2.599408 | ACGGAGGGAGTAAGACTTGA | 57.401 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
126 | 127 | 4.461781 | TCTTTACGGAGGGAGTAAGACTTG | 59.538 | 45.833 | 0.00 | 0.00 | 35.75 | 3.16 |
127 | 128 | 4.670765 | TCTTTACGGAGGGAGTAAGACTT | 58.329 | 43.478 | 0.00 | 0.00 | 35.75 | 3.01 |
128 | 129 | 4.313020 | TCTTTACGGAGGGAGTAAGACT | 57.687 | 45.455 | 0.00 | 0.00 | 35.75 | 3.24 |
129 | 130 | 5.397142 | TTTCTTTACGGAGGGAGTAAGAC | 57.603 | 43.478 | 0.00 | 0.00 | 35.75 | 3.01 |
130 | 131 | 7.909485 | ATATTTCTTTACGGAGGGAGTAAGA | 57.091 | 36.000 | 0.00 | 0.00 | 35.75 | 2.10 |
131 | 132 | 9.694137 | CTTATATTTCTTTACGGAGGGAGTAAG | 57.306 | 37.037 | 0.00 | 0.00 | 35.75 | 2.34 |
132 | 133 | 9.425248 | TCTTATATTTCTTTACGGAGGGAGTAA | 57.575 | 33.333 | 0.00 | 0.00 | 32.84 | 2.24 |
133 | 134 | 9.425248 | TTCTTATATTTCTTTACGGAGGGAGTA | 57.575 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
134 | 135 | 7.909485 | TCTTATATTTCTTTACGGAGGGAGT | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
135 | 136 | 7.381678 | CGTTCTTATATTTCTTTACGGAGGGAG | 59.618 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
136 | 137 | 7.147846 | ACGTTCTTATATTTCTTTACGGAGGGA | 60.148 | 37.037 | 0.00 | 0.00 | 32.54 | 4.20 |
137 | 138 | 6.982724 | ACGTTCTTATATTTCTTTACGGAGGG | 59.017 | 38.462 | 0.00 | 0.00 | 32.54 | 4.30 |
138 | 139 | 7.998753 | ACGTTCTTATATTTCTTTACGGAGG | 57.001 | 36.000 | 0.00 | 0.00 | 32.54 | 4.30 |
165 | 166 | 8.166706 | CGTACAGAAATATAAAAGCGTTTGTCT | 58.833 | 33.333 | 7.95 | 0.65 | 0.00 | 3.41 |
166 | 167 | 7.424452 | CCGTACAGAAATATAAAAGCGTTTGTC | 59.576 | 37.037 | 7.95 | 0.00 | 0.00 | 3.18 |
167 | 168 | 7.118101 | TCCGTACAGAAATATAAAAGCGTTTGT | 59.882 | 33.333 | 7.95 | 3.68 | 0.00 | 2.83 |
168 | 169 | 7.457868 | TCCGTACAGAAATATAAAAGCGTTTG | 58.542 | 34.615 | 7.95 | 0.00 | 0.00 | 2.93 |
169 | 170 | 7.201582 | CCTCCGTACAGAAATATAAAAGCGTTT | 60.202 | 37.037 | 2.53 | 2.53 | 0.00 | 3.60 |
170 | 171 | 6.257193 | CCTCCGTACAGAAATATAAAAGCGTT | 59.743 | 38.462 | 0.00 | 0.00 | 0.00 | 4.84 |
171 | 172 | 5.751990 | CCTCCGTACAGAAATATAAAAGCGT | 59.248 | 40.000 | 0.00 | 0.00 | 0.00 | 5.07 |
172 | 173 | 5.176958 | CCCTCCGTACAGAAATATAAAAGCG | 59.823 | 44.000 | 0.00 | 0.00 | 0.00 | 4.68 |
173 | 174 | 6.285990 | TCCCTCCGTACAGAAATATAAAAGC | 58.714 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
174 | 175 | 7.498443 | ACTCCCTCCGTACAGAAATATAAAAG | 58.502 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
175 | 176 | 7.427989 | ACTCCCTCCGTACAGAAATATAAAA | 57.572 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
176 | 177 | 7.560991 | TGTACTCCCTCCGTACAGAAATATAAA | 59.439 | 37.037 | 0.00 | 0.00 | 41.47 | 1.40 |
177 | 178 | 7.062322 | TGTACTCCCTCCGTACAGAAATATAA | 58.938 | 38.462 | 0.00 | 0.00 | 41.47 | 0.98 |
178 | 179 | 6.604171 | TGTACTCCCTCCGTACAGAAATATA | 58.396 | 40.000 | 0.00 | 0.00 | 41.47 | 0.86 |
179 | 180 | 5.452255 | TGTACTCCCTCCGTACAGAAATAT | 58.548 | 41.667 | 0.00 | 0.00 | 41.47 | 1.28 |
180 | 181 | 4.858850 | TGTACTCCCTCCGTACAGAAATA | 58.141 | 43.478 | 0.00 | 0.00 | 41.47 | 1.40 |
181 | 182 | 3.705051 | TGTACTCCCTCCGTACAGAAAT | 58.295 | 45.455 | 0.00 | 0.00 | 41.47 | 2.17 |
182 | 183 | 3.159213 | TGTACTCCCTCCGTACAGAAA | 57.841 | 47.619 | 0.00 | 0.00 | 41.47 | 2.52 |
183 | 184 | 2.885135 | TGTACTCCCTCCGTACAGAA | 57.115 | 50.000 | 0.00 | 0.00 | 41.47 | 3.02 |
187 | 188 | 4.400567 | ACTTAACATGTACTCCCTCCGTAC | 59.599 | 45.833 | 0.00 | 0.00 | 38.13 | 3.67 |
188 | 189 | 4.400251 | CACTTAACATGTACTCCCTCCGTA | 59.600 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
189 | 190 | 3.194968 | CACTTAACATGTACTCCCTCCGT | 59.805 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
190 | 191 | 3.446161 | TCACTTAACATGTACTCCCTCCG | 59.554 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
191 | 192 | 5.416271 | TTCACTTAACATGTACTCCCTCC | 57.584 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
192 | 193 | 9.444600 | TTTTATTCACTTAACATGTACTCCCTC | 57.555 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
193 | 194 | 9.227777 | GTTTTATTCACTTAACATGTACTCCCT | 57.772 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
194 | 195 | 9.005777 | TGTTTTATTCACTTAACATGTACTCCC | 57.994 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
200 | 201 | 9.950680 | CAGACTTGTTTTATTCACTTAACATGT | 57.049 | 29.630 | 0.00 | 0.00 | 39.82 | 3.21 |
203 | 204 | 9.997482 | GTTCAGACTTGTTTTATTCACTTAACA | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
204 | 205 | 9.997482 | TGTTCAGACTTGTTTTATTCACTTAAC | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
210 | 211 | 9.311916 | CCAAAATGTTCAGACTTGTTTTATTCA | 57.688 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
211 | 212 | 9.313118 | ACCAAAATGTTCAGACTTGTTTTATTC | 57.687 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
212 | 213 | 9.313118 | GACCAAAATGTTCAGACTTGTTTTATT | 57.687 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
213 | 214 | 8.695456 | AGACCAAAATGTTCAGACTTGTTTTAT | 58.305 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
214 | 215 | 7.973388 | CAGACCAAAATGTTCAGACTTGTTTTA | 59.027 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
215 | 216 | 6.813152 | CAGACCAAAATGTTCAGACTTGTTTT | 59.187 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
216 | 217 | 6.071391 | ACAGACCAAAATGTTCAGACTTGTTT | 60.071 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
217 | 218 | 5.418840 | ACAGACCAAAATGTTCAGACTTGTT | 59.581 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
218 | 219 | 4.949856 | ACAGACCAAAATGTTCAGACTTGT | 59.050 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
219 | 220 | 5.505173 | ACAGACCAAAATGTTCAGACTTG | 57.495 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
220 | 221 | 6.357367 | AGTACAGACCAAAATGTTCAGACTT | 58.643 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
221 | 222 | 5.930135 | AGTACAGACCAAAATGTTCAGACT | 58.070 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
222 | 223 | 7.152645 | TCTAGTACAGACCAAAATGTTCAGAC | 58.847 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
223 | 224 | 7.297936 | TCTAGTACAGACCAAAATGTTCAGA | 57.702 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
224 | 225 | 9.088512 | GTATCTAGTACAGACCAAAATGTTCAG | 57.911 | 37.037 | 0.00 | 0.00 | 35.62 | 3.02 |
225 | 226 | 8.590204 | TGTATCTAGTACAGACCAAAATGTTCA | 58.410 | 33.333 | 0.00 | 0.00 | 38.37 | 3.18 |
226 | 227 | 8.997621 | TGTATCTAGTACAGACCAAAATGTTC | 57.002 | 34.615 | 0.00 | 0.00 | 38.37 | 3.18 |
242 | 243 | 8.612145 | ACCCCAAAACTATTTTCTGTATCTAGT | 58.388 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
243 | 244 | 8.893727 | CACCCCAAAACTATTTTCTGTATCTAG | 58.106 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
244 | 245 | 8.387813 | ACACCCCAAAACTATTTTCTGTATCTA | 58.612 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
245 | 246 | 7.238710 | ACACCCCAAAACTATTTTCTGTATCT | 58.761 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
246 | 247 | 7.462571 | ACACCCCAAAACTATTTTCTGTATC | 57.537 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
247 | 248 | 7.849322 | AACACCCCAAAACTATTTTCTGTAT | 57.151 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
248 | 249 | 8.943594 | ATAACACCCCAAAACTATTTTCTGTA | 57.056 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
249 | 250 | 7.849322 | ATAACACCCCAAAACTATTTTCTGT | 57.151 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
255 | 256 | 9.767228 | GTTGTTTAATAACACCCCAAAACTATT | 57.233 | 29.630 | 0.00 | 0.00 | 43.66 | 1.73 |
256 | 257 | 8.083462 | CGTTGTTTAATAACACCCCAAAACTAT | 58.917 | 33.333 | 5.51 | 0.00 | 43.66 | 2.12 |
257 | 258 | 7.424001 | CGTTGTTTAATAACACCCCAAAACTA | 58.576 | 34.615 | 5.51 | 0.00 | 43.66 | 2.24 |
258 | 259 | 6.274579 | CGTTGTTTAATAACACCCCAAAACT | 58.725 | 36.000 | 5.51 | 0.00 | 43.66 | 2.66 |
259 | 260 | 5.050904 | GCGTTGTTTAATAACACCCCAAAAC | 60.051 | 40.000 | 5.51 | 0.00 | 43.66 | 2.43 |
260 | 261 | 5.048507 | GCGTTGTTTAATAACACCCCAAAA | 58.951 | 37.500 | 5.51 | 0.00 | 43.66 | 2.44 |
261 | 262 | 4.501058 | GGCGTTGTTTAATAACACCCCAAA | 60.501 | 41.667 | 5.51 | 0.00 | 43.66 | 3.28 |
262 | 263 | 3.005578 | GGCGTTGTTTAATAACACCCCAA | 59.994 | 43.478 | 5.51 | 0.00 | 43.66 | 4.12 |
263 | 264 | 2.557490 | GGCGTTGTTTAATAACACCCCA | 59.443 | 45.455 | 5.51 | 0.00 | 43.66 | 4.96 |
264 | 265 | 2.821378 | AGGCGTTGTTTAATAACACCCC | 59.179 | 45.455 | 7.79 | 3.74 | 43.66 | 4.95 |
265 | 266 | 4.231439 | CAAGGCGTTGTTTAATAACACCC | 58.769 | 43.478 | 10.97 | 5.81 | 43.66 | 4.61 |
266 | 267 | 4.231439 | CCAAGGCGTTGTTTAATAACACC | 58.769 | 43.478 | 17.23 | 3.88 | 43.66 | 4.16 |
267 | 268 | 3.671459 | GCCAAGGCGTTGTTTAATAACAC | 59.329 | 43.478 | 17.23 | 0.00 | 43.66 | 3.32 |
268 | 269 | 3.903360 | GCCAAGGCGTTGTTTAATAACA | 58.097 | 40.909 | 17.23 | 0.00 | 42.34 | 2.41 |
291 | 292 | 1.446907 | CTCTCTCCAATGTGTGCCAC | 58.553 | 55.000 | 0.00 | 0.00 | 34.56 | 5.01 |
294 | 297 | 1.028868 | GGCCTCTCTCCAATGTGTGC | 61.029 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
295 | 298 | 0.325933 | TGGCCTCTCTCCAATGTGTG | 59.674 | 55.000 | 3.32 | 0.00 | 0.00 | 3.82 |
296 | 299 | 0.326264 | GTGGCCTCTCTCCAATGTGT | 59.674 | 55.000 | 3.32 | 0.00 | 35.01 | 3.72 |
332 | 335 | 1.047596 | GGATCCTCTGCTCCTGCTCA | 61.048 | 60.000 | 3.84 | 0.00 | 40.48 | 4.26 |
345 | 354 | 3.553096 | GCTCGTGTATTTCATCGGATCCT | 60.553 | 47.826 | 10.75 | 0.00 | 0.00 | 3.24 |
354 | 363 | 1.134367 | CTCCTCCGCTCGTGTATTTCA | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
355 | 364 | 1.536284 | CCTCCTCCGCTCGTGTATTTC | 60.536 | 57.143 | 0.00 | 0.00 | 0.00 | 2.17 |
359 | 368 | 1.748122 | GACCTCCTCCGCTCGTGTA | 60.748 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
420 | 429 | 0.981943 | GGAAACTCGAGGGAAGGGAA | 59.018 | 55.000 | 18.41 | 0.00 | 0.00 | 3.97 |
421 | 430 | 0.116541 | AGGAAACTCGAGGGAAGGGA | 59.883 | 55.000 | 18.41 | 0.00 | 32.90 | 4.20 |
422 | 431 | 0.984995 | AAGGAAACTCGAGGGAAGGG | 59.015 | 55.000 | 18.41 | 0.00 | 42.68 | 3.95 |
423 | 432 | 1.066071 | GGAAGGAAACTCGAGGGAAGG | 60.066 | 57.143 | 18.41 | 0.00 | 42.68 | 3.46 |
424 | 433 | 1.903183 | AGGAAGGAAACTCGAGGGAAG | 59.097 | 52.381 | 18.41 | 0.00 | 42.68 | 3.46 |
446 | 455 | 2.187958 | GATGGAAAGGGGGAAAAAGGG | 58.812 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
532 | 542 | 0.815615 | GGGTGGAGATGATTGGCGAC | 60.816 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
533 | 543 | 0.982852 | AGGGTGGAGATGATTGGCGA | 60.983 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
534 | 544 | 0.533755 | GAGGGTGGAGATGATTGGCG | 60.534 | 60.000 | 0.00 | 0.00 | 0.00 | 5.69 |
535 | 545 | 0.842635 | AGAGGGTGGAGATGATTGGC | 59.157 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
548 | 559 | 0.618968 | AGAAGAATGGGCGAGAGGGT | 60.619 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
592 | 603 | 1.652563 | GTTTGGTGGAACGGCAGAC | 59.347 | 57.895 | 0.00 | 0.00 | 38.12 | 3.51 |
693 | 705 | 1.156322 | AGGAGGAGGAGGGAGGAACA | 61.156 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
942 | 962 | 4.366684 | CACCCAACCCCTCCTGGC | 62.367 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
944 | 964 | 3.661648 | CCCACCCAACCCCTCCTG | 61.662 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
1035 | 1055 | 0.248539 | CCTCGAAGTCGGACGAATCC | 60.249 | 60.000 | 1.89 | 0.00 | 42.28 | 3.01 |
1144 | 1164 | 1.045350 | TGCCTCTCCTTGATCCTCCG | 61.045 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1177 | 1197 | 3.429141 | CAGTTCGGCCTGCTGCAG | 61.429 | 66.667 | 22.44 | 22.44 | 43.89 | 4.41 |
1359 | 1379 | 2.035449 | TCTAATGTTATCCGAGGCACCG | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1365 | 1385 | 4.747108 | CACCAAGCTCTAATGTTATCCGAG | 59.253 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
1490 | 1510 | 0.463295 | ATCCATCAAGCTGTGCTCGG | 60.463 | 55.000 | 0.00 | 0.00 | 38.25 | 4.63 |
1755 | 1775 | 5.557136 | GCGAACATGGTTTCTGATCTTATCG | 60.557 | 44.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1865 | 1885 | 0.243365 | GACGCCATTGTCAATGCCAA | 59.757 | 50.000 | 18.52 | 0.00 | 38.75 | 4.52 |
1941 | 1961 | 3.422417 | TCATACTCGTTACTGCTGCTC | 57.578 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1953 | 1973 | 6.421377 | TCAAAACCATCAACATCATACTCG | 57.579 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
2651 | 2671 | 3.045634 | TCTCCAGGGACAGAAGTTGAAA | 58.954 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
2860 | 2880 | 4.994217 | AGAGAGAAACAGCTAAGAAACAGC | 59.006 | 41.667 | 0.00 | 0.00 | 39.41 | 4.40 |
2861 | 2881 | 6.454795 | AGAGAGAGAAACAGCTAAGAAACAG | 58.545 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2862 | 2882 | 6.412362 | AGAGAGAGAAACAGCTAAGAAACA | 57.588 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
2863 | 2883 | 7.439655 | TCAAAGAGAGAGAAACAGCTAAGAAAC | 59.560 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
2864 | 2884 | 7.500992 | TCAAAGAGAGAGAAACAGCTAAGAAA | 58.499 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2865 | 2885 | 7.055667 | TCAAAGAGAGAGAAACAGCTAAGAA | 57.944 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2866 | 2886 | 6.656632 | TCAAAGAGAGAGAAACAGCTAAGA | 57.343 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2867 | 2887 | 6.928492 | AGTTCAAAGAGAGAGAAACAGCTAAG | 59.072 | 38.462 | 0.00 | 0.00 | 0.00 | 2.18 |
2868 | 2888 | 6.703607 | CAGTTCAAAGAGAGAGAAACAGCTAA | 59.296 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
2869 | 2889 | 6.183360 | ACAGTTCAAAGAGAGAGAAACAGCTA | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
2870 | 2890 | 5.055812 | CAGTTCAAAGAGAGAGAAACAGCT | 58.944 | 41.667 | 0.00 | 0.00 | 0.00 | 4.24 |
2954 | 2974 | 4.844349 | AACAGAAAGCATAAGAGCCCTA | 57.156 | 40.909 | 0.00 | 0.00 | 34.23 | 3.53 |
3052 | 3072 | 3.332919 | GGCATGCTACAGATGGTATCAG | 58.667 | 50.000 | 18.92 | 0.00 | 32.12 | 2.90 |
3774 | 3794 | 3.678072 | CACTGTGTAACTACCATCAACCG | 59.322 | 47.826 | 0.00 | 0.00 | 38.04 | 4.44 |
3775 | 3795 | 4.890088 | TCACTGTGTAACTACCATCAACC | 58.110 | 43.478 | 7.79 | 0.00 | 38.04 | 3.77 |
3802 | 3822 | 6.199908 | TGTTGTTGTTGTTGTCAAGAAACAAG | 59.800 | 34.615 | 19.58 | 0.00 | 45.49 | 3.16 |
3813 | 3833 | 4.870426 | TGTTGTTGTTGTTGTTGTTGTTGT | 59.130 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.