Multiple sequence alignment - TraesCS5A01G265500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G265500 chr5A 100.000 5855 0 0 1 5855 477300279 477294425 0.000000e+00 10813.0
1 TraesCS5A01G265500 chr5B 95.187 3241 107 21 2459 5665 449204184 449200959 0.000000e+00 5075.0
2 TraesCS5A01G265500 chr5B 93.904 1821 57 14 655 2461 449206199 449204419 0.000000e+00 2699.0
3 TraesCS5A01G265500 chr5B 91.667 72 5 1 1 71 449235118 449235047 1.340000e-16 99.0
4 TraesCS5A01G265500 chr5D 94.475 1846 48 17 638 2461 376308695 376306882 0.000000e+00 2795.0
5 TraesCS5A01G265500 chr5D 94.806 1752 57 11 3662 5388 376305319 376303577 0.000000e+00 2700.0
6 TraesCS5A01G265500 chr5D 96.728 1039 30 2 2629 3663 376306439 376305401 0.000000e+00 1727.0
7 TraesCS5A01G265500 chr5D 87.234 658 56 13 1 642 376309444 376308799 0.000000e+00 725.0
8 TraesCS5A01G265500 chr5D 90.283 247 16 5 5425 5665 376297776 376297532 3.410000e-82 316.0
9 TraesCS5A01G265500 chr5D 93.605 172 10 1 2459 2630 376306647 376306477 7.530000e-64 255.0
10 TraesCS5A01G265500 chr5D 100.000 34 0 0 2334 2367 376306439 376306472 4.900000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G265500 chr5A 477294425 477300279 5854 True 10813.0 10813 100.0000 1 5855 1 chr5A.!!$R1 5854
1 TraesCS5A01G265500 chr5B 449200959 449206199 5240 True 3887.0 5075 94.5455 655 5665 2 chr5B.!!$R2 5010
2 TraesCS5A01G265500 chr5D 376303577 376309444 5867 True 1640.4 2795 93.3696 1 5388 5 chr5D.!!$R2 5387

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 664 0.100325 CAAAACGGTGTGCTTGCAGA 59.900 50.000 0.00 0.00 0.00 4.26 F
648 665 0.100503 AAAACGGTGTGCTTGCAGAC 59.899 50.000 13.47 13.47 0.00 3.51 F
650 667 0.105964 AACGGTGTGCTTGCAGACTA 59.894 50.000 19.56 0.00 0.00 2.59 F
651 668 0.319900 ACGGTGTGCTTGCAGACTAG 60.320 55.000 19.56 16.17 0.00 2.57 F
2241 2391 0.827089 TGTGCATCAAACCCTGGTGG 60.827 55.000 0.00 0.00 36.57 4.61 F
2936 3363 1.267806 AGCCAGTTCAATTCGTGCTTG 59.732 47.619 0.00 0.00 0.00 4.01 F
4454 4979 2.197324 GTTGCTTGTCCACCCCCA 59.803 61.111 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1834 2.513317 TGCCCTGATAATCACAATGGGA 59.487 45.455 0.00 0.0 35.40 4.37 R
1686 1835 2.948115 TGCCCTGATAATCACAATGGG 58.052 47.619 0.00 0.0 36.41 4.00 R
2405 2555 3.059352 AGGGATGTGTAAGACAAGTGC 57.941 47.619 0.00 0.0 38.36 4.40 R
2443 2593 3.896648 TGTGTAAGCAACTAAGCAAGC 57.103 42.857 0.00 0.0 36.85 4.01 R
3954 4468 1.093159 GAAGCTCAACATGAGGGCAG 58.907 55.000 15.23 0.0 44.43 4.85 R
4525 5061 0.106167 GGAACCATAAGGGGAAGGCC 60.106 60.000 0.00 0.0 42.91 5.19 R
5766 6314 0.031414 ACGAATACCTAGCCCCACCT 60.031 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.360949 CTGAGCCGCCTCATCATCGT 62.361 60.000 0.00 0.00 46.44 3.73
32 33 3.032609 GCCGCCTCATCATCGTCG 61.033 66.667 0.00 0.00 0.00 5.12
57 58 4.891727 CCCGACGCCCATCGAAGG 62.892 72.222 0.00 0.00 45.13 3.46
80 81 4.864334 GCCCATCCCACCGCTGAG 62.864 72.222 0.00 0.00 0.00 3.35
81 82 4.864334 CCCATCCCACCGCTGAGC 62.864 72.222 0.00 0.00 0.00 4.26
82 83 3.790437 CCATCCCACCGCTGAGCT 61.790 66.667 1.78 0.00 0.00 4.09
83 84 2.202987 CATCCCACCGCTGAGCTC 60.203 66.667 6.82 6.82 0.00 4.09
84 85 3.842923 ATCCCACCGCTGAGCTCG 61.843 66.667 9.64 5.21 0.00 5.03
102 104 2.046023 CAGATTGGGAGTGCGCCA 60.046 61.111 4.18 0.00 0.00 5.69
109 111 4.385405 GGAGTGCGCCACTGAGCT 62.385 66.667 15.61 0.00 45.44 4.09
110 112 2.573869 GAGTGCGCCACTGAGCTA 59.426 61.111 15.61 0.00 45.44 3.32
127 143 2.220615 CTACCGCCACACACCATCGA 62.221 60.000 0.00 0.00 0.00 3.59
132 148 1.078214 CCACACACCATCGAGGCAT 60.078 57.895 0.00 0.00 43.14 4.40
146 162 2.123726 GCATAGGTTGCCCAGGGG 60.124 66.667 7.91 3.48 46.15 4.79
147 163 2.689691 GCATAGGTTGCCCAGGGGA 61.690 63.158 7.91 0.00 46.15 4.81
164 180 4.250305 AACCGCACGGAAGCCACT 62.250 61.111 17.40 0.00 38.96 4.00
167 183 2.972505 CGCACGGAAGCCACTGTT 60.973 61.111 0.00 0.00 0.00 3.16
172 188 1.135689 CACGGAAGCCACTGTTATTGC 60.136 52.381 0.00 0.00 0.00 3.56
199 216 3.255379 GGCTTCGTCGACGGCATC 61.255 66.667 35.05 21.26 40.29 3.91
202 219 1.743855 GCTTCGTCGACGGCATCTTC 61.744 60.000 35.05 14.94 40.29 2.87
204 221 1.914531 TTCGTCGACGGCATCTTCGA 61.915 55.000 35.05 12.03 40.55 3.71
208 225 1.226974 CGACGGCATCTTCGATGGT 60.227 57.895 6.04 0.00 36.89 3.55
209 226 1.482621 CGACGGCATCTTCGATGGTG 61.483 60.000 7.19 7.19 36.89 4.17
277 294 1.410850 CCCACTGTGTCACCAGAGGT 61.411 60.000 7.08 0.00 40.41 3.85
312 329 0.240945 GTTTCCGTGGCCAATGTCTG 59.759 55.000 7.24 0.00 0.00 3.51
342 359 2.622064 GGCCTCCCCTTATATATGCG 57.378 55.000 0.00 0.00 0.00 4.73
343 360 1.141053 GGCCTCCCCTTATATATGCGG 59.859 57.143 0.00 0.00 0.00 5.69
345 362 2.238898 GCCTCCCCTTATATATGCGGTT 59.761 50.000 0.00 0.00 0.00 4.44
346 363 3.308188 GCCTCCCCTTATATATGCGGTTT 60.308 47.826 0.00 0.00 0.00 3.27
371 388 4.395231 GGCTAGGGTTTTACAATGTGAGAC 59.605 45.833 0.00 0.00 0.00 3.36
377 394 5.640357 GGGTTTTACAATGTGAGACATACGA 59.360 40.000 0.00 0.00 37.97 3.43
379 396 7.399523 GGTTTTACAATGTGAGACATACGATC 58.600 38.462 0.00 0.00 37.97 3.69
393 410 1.153449 CGATCTAGGTTGCCGCCAA 60.153 57.895 0.00 0.00 0.00 4.52
403 420 2.058125 TTGCCGCCAACCCAGACTTA 62.058 55.000 0.00 0.00 0.00 2.24
440 457 1.148498 GGTTGCCTATCCTTCCCGG 59.852 63.158 0.00 0.00 0.00 5.73
457 474 3.423154 GGCTGGTTCTTGTCGCCG 61.423 66.667 0.00 0.00 0.00 6.46
461 478 2.162338 CTGGTTCTTGTCGCCGGGTA 62.162 60.000 2.18 0.00 0.00 3.69
499 516 1.076549 CCTTGGGGCAGGCTTGTTA 59.923 57.895 0.00 0.00 0.00 2.41
503 520 1.228737 GGGGCAGGCTTGTTACCAA 60.229 57.895 0.00 0.00 0.00 3.67
526 543 1.860240 TCCTATAGGTGAGCCACTCCT 59.140 52.381 18.51 6.38 43.70 3.69
528 545 1.967066 CTATAGGTGAGCCACTCCTGG 59.033 57.143 10.93 0.00 41.77 4.45
599 616 7.459795 AGGAAAACCAAGCAAAATTCAAAAA 57.540 28.000 0.00 0.00 0.00 1.94
600 617 7.312154 AGGAAAACCAAGCAAAATTCAAAAAC 58.688 30.769 0.00 0.00 0.00 2.43
601 618 7.040132 AGGAAAACCAAGCAAAATTCAAAAACA 60.040 29.630 0.00 0.00 0.00 2.83
602 619 7.273164 GGAAAACCAAGCAAAATTCAAAAACAG 59.727 33.333 0.00 0.00 0.00 3.16
603 620 7.446001 AAACCAAGCAAAATTCAAAAACAGA 57.554 28.000 0.00 0.00 0.00 3.41
604 621 7.446001 AACCAAGCAAAATTCAAAAACAGAA 57.554 28.000 0.00 0.00 0.00 3.02
623 640 2.452006 AAAAACGAGAACACGTGCAG 57.548 45.000 17.22 5.13 45.83 4.41
638 655 1.135228 GTGCAGGAAACAAAACGGTGT 60.135 47.619 0.00 0.00 0.00 4.16
642 659 1.822371 AGGAAACAAAACGGTGTGCTT 59.178 42.857 0.00 0.00 0.00 3.91
643 660 1.923864 GGAAACAAAACGGTGTGCTTG 59.076 47.619 0.00 0.00 0.00 4.01
644 661 1.323235 GAAACAAAACGGTGTGCTTGC 59.677 47.619 0.00 0.00 0.00 4.01
645 662 0.244994 AACAAAACGGTGTGCTTGCA 59.755 45.000 0.00 0.00 0.00 4.08
646 663 0.179140 ACAAAACGGTGTGCTTGCAG 60.179 50.000 0.00 0.00 0.00 4.41
647 664 0.100325 CAAAACGGTGTGCTTGCAGA 59.900 50.000 0.00 0.00 0.00 4.26
648 665 0.100503 AAAACGGTGTGCTTGCAGAC 59.899 50.000 13.47 13.47 0.00 3.51
649 666 0.748005 AAACGGTGTGCTTGCAGACT 60.748 50.000 19.56 1.49 0.00 3.24
650 667 0.105964 AACGGTGTGCTTGCAGACTA 59.894 50.000 19.56 0.00 0.00 2.59
651 668 0.319900 ACGGTGTGCTTGCAGACTAG 60.320 55.000 19.56 16.17 0.00 2.57
652 669 0.319900 CGGTGTGCTTGCAGACTAGT 60.320 55.000 19.56 0.00 0.00 2.57
653 670 1.873903 CGGTGTGCTTGCAGACTAGTT 60.874 52.381 19.56 0.00 0.00 2.24
670 797 4.597507 ACTAGTTTCCCACCATCTTCTTCA 59.402 41.667 0.00 0.00 0.00 3.02
702 829 8.168058 AGTGGGAGGCTTTTAGTTTAATCTTTA 58.832 33.333 0.00 0.00 0.00 1.85
739 868 9.444600 AAAAAGACTAGAAGGCGTAATATCAAA 57.555 29.630 0.00 0.00 0.00 2.69
773 902 3.660111 GGGCTTGACGGTGCACAC 61.660 66.667 20.43 9.92 32.02 3.82
810 939 4.641989 CCTTGTCATATCCCAAGTTGGAAG 59.358 45.833 24.06 14.76 40.96 3.46
899 1031 1.072331 CAAATATCCCCGGAGACCAGG 59.928 57.143 0.73 0.00 0.00 4.45
1161 1294 2.268920 GAGATGGCGTGGGAGCAA 59.731 61.111 0.00 0.00 39.27 3.91
1523 1664 0.981183 TGGGCAGTACCACCACTAAG 59.019 55.000 4.30 0.00 42.05 2.18
1642 1787 5.416639 TGCAAAGATCTCATGTTGCTACATT 59.583 36.000 23.50 0.00 42.29 2.71
1643 1788 6.598850 TGCAAAGATCTCATGTTGCTACATTA 59.401 34.615 23.50 3.04 42.29 1.90
1651 1800 3.133141 TGTTGCTACATTAGGTGCACA 57.867 42.857 20.43 0.00 34.69 4.57
1681 1830 5.954434 GCAAATTATGCGTGTGAAATGAT 57.046 34.783 0.00 0.00 46.87 2.45
1682 1831 5.720239 GCAAATTATGCGTGTGAAATGATG 58.280 37.500 0.00 0.00 46.87 3.07
1683 1832 5.289193 GCAAATTATGCGTGTGAAATGATGT 59.711 36.000 0.00 0.00 46.87 3.06
1684 1833 6.688601 CAAATTATGCGTGTGAAATGATGTG 58.311 36.000 0.00 0.00 0.00 3.21
1685 1834 5.565592 ATTATGCGTGTGAAATGATGTGT 57.434 34.783 0.00 0.00 0.00 3.72
1686 1835 2.967459 TGCGTGTGAAATGATGTGTC 57.033 45.000 0.00 0.00 0.00 3.67
1687 1836 1.535028 TGCGTGTGAAATGATGTGTCC 59.465 47.619 0.00 0.00 0.00 4.02
1688 1837 1.135689 GCGTGTGAAATGATGTGTCCC 60.136 52.381 0.00 0.00 0.00 4.46
1689 1838 2.150390 CGTGTGAAATGATGTGTCCCA 58.850 47.619 0.00 0.00 0.00 4.37
1690 1839 2.749076 CGTGTGAAATGATGTGTCCCAT 59.251 45.455 0.00 0.00 36.13 4.00
1691 1840 3.191162 CGTGTGAAATGATGTGTCCCATT 59.809 43.478 0.00 0.00 32.56 3.16
1692 1841 4.487948 GTGTGAAATGATGTGTCCCATTG 58.512 43.478 0.00 0.00 33.70 2.82
1693 1842 4.022068 GTGTGAAATGATGTGTCCCATTGT 60.022 41.667 0.00 0.00 33.70 2.71
1694 1843 4.022155 TGTGAAATGATGTGTCCCATTGTG 60.022 41.667 0.00 0.00 33.70 3.33
1695 1844 4.218200 GTGAAATGATGTGTCCCATTGTGA 59.782 41.667 0.00 0.00 33.70 3.58
1696 1845 5.018149 TGAAATGATGTGTCCCATTGTGAT 58.982 37.500 0.00 0.00 33.70 3.06
1697 1846 5.481122 TGAAATGATGTGTCCCATTGTGATT 59.519 36.000 0.00 0.00 33.70 2.57
1698 1847 6.662663 TGAAATGATGTGTCCCATTGTGATTA 59.337 34.615 0.00 0.00 33.70 1.75
1699 1848 7.342541 TGAAATGATGTGTCCCATTGTGATTAT 59.657 33.333 0.00 0.00 33.70 1.28
1700 1849 6.889301 ATGATGTGTCCCATTGTGATTATC 57.111 37.500 0.00 0.00 32.56 1.75
1701 1850 5.753716 TGATGTGTCCCATTGTGATTATCA 58.246 37.500 0.00 0.00 32.56 2.15
1702 1851 5.824097 TGATGTGTCCCATTGTGATTATCAG 59.176 40.000 0.00 0.00 32.56 2.90
1703 1852 4.525996 TGTGTCCCATTGTGATTATCAGG 58.474 43.478 0.00 0.00 0.00 3.86
1844 1994 2.352651 CTGTATTGTTGTGCGGATGAGG 59.647 50.000 0.00 0.00 0.00 3.86
1848 1998 1.750399 GTTGTGCGGATGAGGGCAT 60.750 57.895 0.00 0.00 41.83 4.40
1858 2008 4.641396 CGGATGAGGGCATTTATAGTTCA 58.359 43.478 0.00 0.00 34.11 3.18
1939 2089 9.884465 CTTCCAACAAAGTCTTTATCTTGTAAG 57.116 33.333 0.00 0.44 0.00 2.34
2044 2194 1.572941 CATCGATCATTGGCCTGCG 59.427 57.895 3.32 0.00 0.00 5.18
2060 2210 2.159338 CCTGCGATGACAAAATGGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
2225 2375 8.377681 GTGATTCTGCATTTCATTACAAATGTG 58.622 33.333 7.54 0.00 43.16 3.21
2241 2391 0.827089 TGTGCATCAAACCCTGGTGG 60.827 55.000 0.00 0.00 36.57 4.61
2250 2400 4.850193 CCCTGGTGGTTCAATGCT 57.150 55.556 0.00 0.00 0.00 3.79
2405 2555 3.910767 GCTTCAAAGTTTGATCTTCAGCG 59.089 43.478 18.69 2.75 39.84 5.18
2409 2559 2.175878 AGTTTGATCTTCAGCGCACT 57.824 45.000 11.47 0.00 0.00 4.40
2425 2575 2.612972 CGCACTTGTCTTACACATCCCT 60.613 50.000 0.00 0.00 33.90 4.20
2443 2593 6.040166 ACATCCCTTTACACTATAGTACCACG 59.960 42.308 4.74 0.00 0.00 4.94
2481 2868 7.594758 GCTTACACAATAAGCACATTTTTGAGA 59.405 33.333 12.62 0.00 46.61 3.27
2556 2943 3.470709 CTTGGCCGTCAGATTCATATGT 58.529 45.455 1.90 0.00 0.00 2.29
2557 2944 3.111853 TGGCCGTCAGATTCATATGTC 57.888 47.619 1.90 0.00 0.00 3.06
2651 3077 8.648968 ACTTATTTTGTGTTTGTTGTTTTACCG 58.351 29.630 0.00 0.00 0.00 4.02
2655 3081 3.504906 TGTGTTTGTTGTTTTACCGACCA 59.495 39.130 0.00 0.00 0.00 4.02
2664 3090 7.140048 TGTTGTTTTACCGACCATGTTATTTC 58.860 34.615 0.00 0.00 0.00 2.17
2747 3174 4.661993 TTACGTGCTTCACTTTGCTATG 57.338 40.909 0.00 0.00 31.34 2.23
2858 3285 4.749245 AGCTGTGTAAAATCTTGTTCCG 57.251 40.909 0.00 0.00 0.00 4.30
2884 3311 3.979347 AGAGAATATCCAGGAATGCCAGT 59.021 43.478 0.00 0.00 36.29 4.00
2915 3342 8.762645 AGTAGCTAGCTATTTATATGCAATCCA 58.237 33.333 26.59 0.00 0.00 3.41
2929 3356 3.256558 GCAATCCAAGCCAGTTCAATTC 58.743 45.455 0.00 0.00 0.00 2.17
2936 3363 1.267806 AGCCAGTTCAATTCGTGCTTG 59.732 47.619 0.00 0.00 0.00 4.01
2946 3373 4.864806 TCAATTCGTGCTTGCTTCTAGTAG 59.135 41.667 0.00 0.00 0.00 2.57
3028 3455 3.614092 AGTGATGTATGACCCTTGCTTG 58.386 45.455 0.00 0.00 0.00 4.01
3033 3460 3.681593 TGTATGACCCTTGCTTGGTTAC 58.318 45.455 0.00 0.00 35.85 2.50
3248 3675 4.314522 TCCATTATTTGAGCAGGTGGAA 57.685 40.909 0.00 0.00 31.81 3.53
3579 4006 6.313744 CCTGTACCTTAAAACTTGAACAGG 57.686 41.667 3.98 3.98 44.72 4.00
3660 4090 8.898761 TGGTGTTCTGTTATGCGATTAATTTAT 58.101 29.630 0.00 0.00 0.00 1.40
3686 4200 7.085052 AGTTTTAACTGTGTTTCCTTCAGTC 57.915 36.000 0.00 0.00 40.81 3.51
3940 4454 3.879295 CTGATGACCTTGTGAGTGTTTGT 59.121 43.478 0.00 0.00 0.00 2.83
3954 4468 9.944663 TGTGAGTGTTTGTGTTAGAAATTATTC 57.055 29.630 0.00 0.00 35.70 1.75
4178 4692 5.298989 ACCCACACACAGAAACTATGTTA 57.701 39.130 0.00 0.00 0.00 2.41
4232 4746 6.618287 TCTGACAAGTTACATGTTGGAAAG 57.382 37.500 2.30 0.00 0.00 2.62
4246 4760 6.457159 TGTTGGAAAGGAAGAATACCCTTA 57.543 37.500 0.00 0.00 41.61 2.69
4404 4929 7.952671 TCAGTAAACTATGATAGATCACCACC 58.047 38.462 6.45 0.00 40.03 4.61
4405 4930 7.015292 TCAGTAAACTATGATAGATCACCACCC 59.985 40.741 6.45 0.00 40.03 4.61
4406 4931 6.844388 AGTAAACTATGATAGATCACCACCCA 59.156 38.462 6.45 0.00 40.03 4.51
4407 4932 5.552870 AACTATGATAGATCACCACCCAC 57.447 43.478 6.45 0.00 40.03 4.61
4454 4979 2.197324 GTTGCTTGTCCACCCCCA 59.803 61.111 0.00 0.00 0.00 4.96
4525 5061 7.224297 AGGTACAGCAATACAGGGTTATATTG 58.776 38.462 0.00 0.00 40.35 1.90
4690 5230 6.652481 GGTGGATCTTGACAACATAGATATGG 59.348 42.308 4.93 0.00 38.00 2.74
4794 5334 3.430929 GGTGGCATTACGTCAGATCTCTT 60.431 47.826 0.00 0.00 0.00 2.85
4810 5350 6.416455 CAGATCTCTTTCGATTAGTTTCTCCG 59.584 42.308 0.00 0.00 0.00 4.63
4850 5390 3.057033 ACAACAGTTATAAGTCCGAGCGT 60.057 43.478 0.00 0.00 0.00 5.07
4888 5428 3.458189 GGTCTTTGATACATCAGGACCG 58.542 50.000 20.40 2.09 43.89 4.79
4905 5445 0.106469 CCGGATCTCAGGACTCAGGA 60.106 60.000 0.00 0.00 32.68 3.86
4984 5524 4.142622 TGGATGTAGTCGTTTGTACCTACG 60.143 45.833 9.77 9.77 39.03 3.51
4987 5527 5.627499 TGTAGTCGTTTGTACCTACGATT 57.373 39.130 18.54 16.94 46.87 3.34
4998 5538 3.079960 ACCTACGATTGCAGATGTACG 57.920 47.619 0.00 0.00 0.00 3.67
5005 5545 3.802139 CGATTGCAGATGTACGTGGTTAT 59.198 43.478 0.00 0.00 0.00 1.89
5053 5593 9.089601 CATTTAATTGCTGTTATTGCAGATGAA 57.910 29.630 0.00 0.00 41.71 2.57
5056 5596 4.424061 TGCTGTTATTGCAGATGAACAC 57.576 40.909 0.00 0.00 38.70 3.32
5063 5603 6.072728 TGTTATTGCAGATGAACACTGTTACC 60.073 38.462 0.00 0.00 37.64 2.85
5201 5744 2.626743 AGGCTGATGCATTTTATGAGGC 59.373 45.455 0.00 0.00 41.91 4.70
5210 5753 5.252547 TGCATTTTATGAGGCTCTGTAACA 58.747 37.500 16.72 8.49 0.00 2.41
5216 5759 4.767578 ATGAGGCTCTGTAACACATGAT 57.232 40.909 16.72 0.00 0.00 2.45
5258 5801 0.607489 GCTGCAACTGTGATGTCCCT 60.607 55.000 0.00 0.00 0.00 4.20
5273 5816 5.431731 TGATGTCCCTAATACTCCAATGGTT 59.568 40.000 0.00 0.00 0.00 3.67
5275 5818 7.294720 TGATGTCCCTAATACTCCAATGGTTAT 59.705 37.037 0.00 0.00 0.00 1.89
5312 5858 5.661056 TCGGTCTCTCTGTTATGTTCATT 57.339 39.130 0.00 0.00 0.00 2.57
5319 5865 9.809096 GTCTCTCTGTTATGTTCATTCATTCTA 57.191 33.333 0.00 0.00 0.00 2.10
5338 5884 8.331740 TCATTCTAGATCCTGAAAAGTTGGAAT 58.668 33.333 0.00 0.00 33.20 3.01
5369 5915 6.349363 CCACCTTCTATTCTGTTAAAACCTGC 60.349 42.308 0.00 0.00 0.00 4.85
5394 5940 9.939047 GCGTTGATATATCTTTTTCTATGTACG 57.061 33.333 13.79 0.00 0.00 3.67
5487 6033 0.038343 CCAAAAGCACCAATGGTCGG 60.038 55.000 0.00 0.00 34.76 4.79
5492 6038 1.002624 GCACCAATGGTCGGAGGAA 60.003 57.895 0.00 0.00 31.02 3.36
5493 6039 0.608035 GCACCAATGGTCGGAGGAAA 60.608 55.000 0.00 0.00 31.02 3.13
5494 6040 1.165270 CACCAATGGTCGGAGGAAAC 58.835 55.000 0.00 0.00 31.02 2.78
5495 6041 0.037734 ACCAATGGTCGGAGGAAACC 59.962 55.000 0.00 0.00 36.03 3.27
5496 6042 0.328258 CCAATGGTCGGAGGAAACCT 59.672 55.000 0.00 0.00 36.47 3.50
5497 6043 1.557832 CCAATGGTCGGAGGAAACCTA 59.442 52.381 0.00 0.00 36.47 3.08
5498 6044 2.629051 CAATGGTCGGAGGAAACCTAC 58.371 52.381 0.00 0.00 36.47 3.18
5499 6045 1.201424 ATGGTCGGAGGAAACCTACC 58.799 55.000 0.00 0.00 43.38 3.18
5500 6046 1.252904 TGGTCGGAGGAAACCTACCG 61.253 60.000 16.48 16.48 45.20 4.02
5528 6076 0.631212 ACCAGCCAAAGGATTAGGGG 59.369 55.000 0.00 0.00 0.00 4.79
5588 6136 9.160496 GGGTTAATTCAAATCATATTGTTTGCA 57.840 29.630 5.18 0.00 35.76 4.08
5605 6153 6.114767 TGTTTGCATATCTAGCTGTGATTCA 58.885 36.000 8.91 4.08 0.00 2.57
5620 6168 3.437049 GTGATTCACAGAAGTAGTTGCCC 59.563 47.826 11.93 0.00 34.08 5.36
5621 6169 3.072330 TGATTCACAGAAGTAGTTGCCCA 59.928 43.478 0.00 0.00 0.00 5.36
5622 6170 3.569194 TTCACAGAAGTAGTTGCCCAA 57.431 42.857 0.00 0.00 0.00 4.12
5623 6171 3.126001 TCACAGAAGTAGTTGCCCAAG 57.874 47.619 0.00 0.00 0.00 3.61
5624 6172 1.537202 CACAGAAGTAGTTGCCCAAGC 59.463 52.381 0.00 0.00 40.48 4.01
5665 6213 3.008594 CCATGTTTAGTGGGTGGACTGTA 59.991 47.826 0.00 0.00 32.98 2.74
5666 6214 3.756933 TGTTTAGTGGGTGGACTGTAC 57.243 47.619 0.00 0.00 0.00 2.90
5667 6215 2.369532 TGTTTAGTGGGTGGACTGTACC 59.630 50.000 0.00 0.00 37.48 3.34
5668 6216 2.636403 GTTTAGTGGGTGGACTGTACCT 59.364 50.000 0.13 0.00 38.30 3.08
5669 6217 2.708037 TAGTGGGTGGACTGTACCTT 57.292 50.000 0.13 0.00 38.30 3.50
5670 6218 1.056660 AGTGGGTGGACTGTACCTTG 58.943 55.000 0.13 0.00 38.30 3.61
5671 6219 0.763035 GTGGGTGGACTGTACCTTGT 59.237 55.000 0.13 0.00 38.30 3.16
5672 6220 0.762418 TGGGTGGACTGTACCTTGTG 59.238 55.000 0.13 0.00 38.30 3.33
5673 6221 0.605589 GGGTGGACTGTACCTTGTGC 60.606 60.000 0.13 0.00 38.30 4.57
5674 6222 0.949105 GGTGGACTGTACCTTGTGCG 60.949 60.000 0.00 0.00 35.30 5.34
5675 6223 0.032952 GTGGACTGTACCTTGTGCGA 59.967 55.000 0.00 0.00 0.00 5.10
5676 6224 0.032952 TGGACTGTACCTTGTGCGAC 59.967 55.000 0.00 0.00 0.00 5.19
5677 6225 1.007336 GGACTGTACCTTGTGCGACG 61.007 60.000 0.00 0.00 0.00 5.12
5678 6226 0.318445 GACTGTACCTTGTGCGACGT 60.318 55.000 0.00 0.00 0.00 4.34
5679 6227 0.103572 ACTGTACCTTGTGCGACGTT 59.896 50.000 0.00 0.00 0.00 3.99
5680 6228 1.214367 CTGTACCTTGTGCGACGTTT 58.786 50.000 0.00 0.00 0.00 3.60
5681 6229 1.595794 CTGTACCTTGTGCGACGTTTT 59.404 47.619 0.00 0.00 0.00 2.43
5682 6230 1.593933 TGTACCTTGTGCGACGTTTTC 59.406 47.619 0.00 0.00 0.00 2.29
5683 6231 1.862827 GTACCTTGTGCGACGTTTTCT 59.137 47.619 0.00 0.00 0.00 2.52
5684 6232 1.375551 ACCTTGTGCGACGTTTTCTT 58.624 45.000 0.00 0.00 0.00 2.52
5685 6233 1.741145 ACCTTGTGCGACGTTTTCTTT 59.259 42.857 0.00 0.00 0.00 2.52
5686 6234 2.108700 CCTTGTGCGACGTTTTCTTTG 58.891 47.619 0.00 0.00 0.00 2.77
5687 6235 2.223157 CCTTGTGCGACGTTTTCTTTGA 60.223 45.455 0.00 0.00 0.00 2.69
5688 6236 2.445453 TGTGCGACGTTTTCTTTGAC 57.555 45.000 0.00 0.00 0.00 3.18
5689 6237 1.732809 TGTGCGACGTTTTCTTTGACA 59.267 42.857 0.00 0.00 0.00 3.58
5690 6238 2.159824 TGTGCGACGTTTTCTTTGACAA 59.840 40.909 0.00 0.00 0.00 3.18
5691 6239 2.524699 GTGCGACGTTTTCTTTGACAAC 59.475 45.455 0.00 0.00 0.00 3.32
5692 6240 2.106418 GCGACGTTTTCTTTGACAACC 58.894 47.619 0.00 0.00 0.00 3.77
5693 6241 2.476519 GCGACGTTTTCTTTGACAACCA 60.477 45.455 0.00 0.00 0.00 3.67
5694 6242 3.790789 GCGACGTTTTCTTTGACAACCAT 60.791 43.478 0.00 0.00 0.00 3.55
5695 6243 3.966218 CGACGTTTTCTTTGACAACCATC 59.034 43.478 0.00 0.00 0.00 3.51
5696 6244 3.947626 ACGTTTTCTTTGACAACCATCG 58.052 40.909 0.00 0.00 0.00 3.84
5697 6245 3.375922 ACGTTTTCTTTGACAACCATCGT 59.624 39.130 0.00 0.00 0.00 3.73
5698 6246 3.966218 CGTTTTCTTTGACAACCATCGTC 59.034 43.478 0.00 0.00 0.00 4.20
5699 6247 4.287720 GTTTTCTTTGACAACCATCGTCC 58.712 43.478 0.00 0.00 32.15 4.79
5700 6248 3.485463 TTCTTTGACAACCATCGTCCT 57.515 42.857 0.00 0.00 32.15 3.85
5701 6249 3.485463 TCTTTGACAACCATCGTCCTT 57.515 42.857 0.00 0.00 32.15 3.36
5702 6250 3.815809 TCTTTGACAACCATCGTCCTTT 58.184 40.909 0.00 0.00 32.15 3.11
5703 6251 3.563808 TCTTTGACAACCATCGTCCTTTG 59.436 43.478 0.00 0.00 32.15 2.77
5704 6252 2.631160 TGACAACCATCGTCCTTTGT 57.369 45.000 0.00 0.00 34.88 2.83
5705 6253 2.925724 TGACAACCATCGTCCTTTGTT 58.074 42.857 0.00 0.00 32.34 2.83
5706 6254 2.875933 TGACAACCATCGTCCTTTGTTC 59.124 45.455 0.00 0.00 32.34 3.18
5707 6255 3.139077 GACAACCATCGTCCTTTGTTCT 58.861 45.455 0.00 0.00 32.34 3.01
5708 6256 2.878406 ACAACCATCGTCCTTTGTTCTG 59.122 45.455 0.00 0.00 0.00 3.02
5709 6257 2.185004 ACCATCGTCCTTTGTTCTGG 57.815 50.000 0.00 0.00 0.00 3.86
5710 6258 0.804989 CCATCGTCCTTTGTTCTGGC 59.195 55.000 0.00 0.00 0.00 4.85
5711 6259 0.443869 CATCGTCCTTTGTTCTGGCG 59.556 55.000 0.00 0.00 0.00 5.69
5712 6260 0.673644 ATCGTCCTTTGTTCTGGCGG 60.674 55.000 0.00 0.00 0.00 6.13
5713 6261 2.954611 GTCCTTTGTTCTGGCGGC 59.045 61.111 0.00 0.00 0.00 6.53
5714 6262 2.282180 TCCTTTGTTCTGGCGGCC 60.282 61.111 13.32 13.32 0.00 6.13
5715 6263 3.737172 CCTTTGTTCTGGCGGCCG 61.737 66.667 24.05 24.05 0.00 6.13
5716 6264 2.978010 CTTTGTTCTGGCGGCCGT 60.978 61.111 28.70 0.00 0.00 5.68
5717 6265 2.517402 TTTGTTCTGGCGGCCGTT 60.517 55.556 28.70 0.00 0.00 4.44
5718 6266 2.731587 CTTTGTTCTGGCGGCCGTTG 62.732 60.000 28.70 16.85 0.00 4.10
5731 6279 4.778143 CGTTGCCGGGAAGAGGGG 62.778 72.222 9.39 0.00 0.00 4.79
5732 6280 3.647771 GTTGCCGGGAAGAGGGGT 61.648 66.667 9.39 0.00 0.00 4.95
5733 6281 3.646715 TTGCCGGGAAGAGGGGTG 61.647 66.667 3.37 0.00 0.00 4.61
5736 6284 2.366972 CCGGGAAGAGGGGTGGAT 60.367 66.667 0.00 0.00 0.00 3.41
5737 6285 2.444256 CCGGGAAGAGGGGTGGATC 61.444 68.421 0.00 0.00 0.00 3.36
5738 6286 1.383248 CGGGAAGAGGGGTGGATCT 60.383 63.158 0.00 0.00 0.00 2.75
5739 6287 1.403687 CGGGAAGAGGGGTGGATCTC 61.404 65.000 0.00 0.00 0.00 2.75
5740 6288 1.057275 GGGAAGAGGGGTGGATCTCC 61.057 65.000 0.00 0.00 36.82 3.71
5741 6289 0.326618 GGAAGAGGGGTGGATCTCCA 60.327 60.000 0.00 0.00 45.30 3.86
5753 6301 4.240881 TGGATCTCCATTTTTCTCCCTG 57.759 45.455 0.00 0.00 42.01 4.45
5754 6302 2.954989 GGATCTCCATTTTTCTCCCTGC 59.045 50.000 0.00 0.00 35.64 4.85
5755 6303 2.514458 TCTCCATTTTTCTCCCTGCC 57.486 50.000 0.00 0.00 0.00 4.85
5756 6304 1.995542 TCTCCATTTTTCTCCCTGCCT 59.004 47.619 0.00 0.00 0.00 4.75
5757 6305 3.189606 TCTCCATTTTTCTCCCTGCCTA 58.810 45.455 0.00 0.00 0.00 3.93
5758 6306 3.054361 TCTCCATTTTTCTCCCTGCCTAC 60.054 47.826 0.00 0.00 0.00 3.18
5759 6307 2.647299 TCCATTTTTCTCCCTGCCTACA 59.353 45.455 0.00 0.00 0.00 2.74
5760 6308 2.755103 CCATTTTTCTCCCTGCCTACAC 59.245 50.000 0.00 0.00 0.00 2.90
5761 6309 3.420893 CATTTTTCTCCCTGCCTACACA 58.579 45.455 0.00 0.00 0.00 3.72
5762 6310 3.806949 TTTTTCTCCCTGCCTACACAT 57.193 42.857 0.00 0.00 0.00 3.21
5763 6311 4.919774 TTTTTCTCCCTGCCTACACATA 57.080 40.909 0.00 0.00 0.00 2.29
5764 6312 4.919774 TTTTCTCCCTGCCTACACATAA 57.080 40.909 0.00 0.00 0.00 1.90
5765 6313 4.919774 TTTCTCCCTGCCTACACATAAA 57.080 40.909 0.00 0.00 0.00 1.40
5766 6314 4.919774 TTCTCCCTGCCTACACATAAAA 57.080 40.909 0.00 0.00 0.00 1.52
5767 6315 4.487714 TCTCCCTGCCTACACATAAAAG 57.512 45.455 0.00 0.00 0.00 2.27
5768 6316 3.199946 TCTCCCTGCCTACACATAAAAGG 59.800 47.826 0.00 0.00 0.00 3.11
5769 6317 2.916934 TCCCTGCCTACACATAAAAGGT 59.083 45.455 0.00 0.00 32.67 3.50
5770 6318 3.016736 CCCTGCCTACACATAAAAGGTG 58.983 50.000 0.00 0.00 41.95 4.00
5771 6319 3.016736 CCTGCCTACACATAAAAGGTGG 58.983 50.000 0.00 0.00 40.54 4.61
5772 6320 3.016736 CTGCCTACACATAAAAGGTGGG 58.983 50.000 0.00 0.00 40.54 4.61
5773 6321 2.291282 TGCCTACACATAAAAGGTGGGG 60.291 50.000 0.00 0.00 40.54 4.96
5774 6322 2.375146 CCTACACATAAAAGGTGGGGC 58.625 52.381 0.00 0.00 40.54 5.80
5775 6323 2.025321 CCTACACATAAAAGGTGGGGCT 60.025 50.000 0.00 0.00 40.54 5.19
5776 6324 3.201266 CCTACACATAAAAGGTGGGGCTA 59.799 47.826 0.00 0.00 40.54 3.93
5777 6325 3.366052 ACACATAAAAGGTGGGGCTAG 57.634 47.619 0.00 0.00 40.54 3.42
5778 6326 2.025321 ACACATAAAAGGTGGGGCTAGG 60.025 50.000 0.00 0.00 40.54 3.02
5779 6327 2.025321 CACATAAAAGGTGGGGCTAGGT 60.025 50.000 0.00 0.00 32.65 3.08
5780 6328 3.201266 CACATAAAAGGTGGGGCTAGGTA 59.799 47.826 0.00 0.00 32.65 3.08
5781 6329 4.052199 ACATAAAAGGTGGGGCTAGGTAT 58.948 43.478 0.00 0.00 0.00 2.73
5782 6330 4.480908 ACATAAAAGGTGGGGCTAGGTATT 59.519 41.667 0.00 0.00 0.00 1.89
5783 6331 3.664551 AAAAGGTGGGGCTAGGTATTC 57.335 47.619 0.00 0.00 0.00 1.75
5784 6332 1.129058 AAGGTGGGGCTAGGTATTCG 58.871 55.000 0.00 0.00 0.00 3.34
5785 6333 0.031414 AGGTGGGGCTAGGTATTCGT 60.031 55.000 0.00 0.00 0.00 3.85
5786 6334 0.835276 GGTGGGGCTAGGTATTCGTT 59.165 55.000 0.00 0.00 0.00 3.85
5787 6335 1.211212 GGTGGGGCTAGGTATTCGTTT 59.789 52.381 0.00 0.00 0.00 3.60
5788 6336 2.285977 GTGGGGCTAGGTATTCGTTTG 58.714 52.381 0.00 0.00 0.00 2.93
5789 6337 1.210967 TGGGGCTAGGTATTCGTTTGG 59.789 52.381 0.00 0.00 0.00 3.28
5790 6338 1.306148 GGGCTAGGTATTCGTTTGGC 58.694 55.000 0.00 0.00 0.00 4.52
5791 6339 0.935196 GGCTAGGTATTCGTTTGGCG 59.065 55.000 0.00 0.00 43.01 5.69
5792 6340 1.648504 GCTAGGTATTCGTTTGGCGT 58.351 50.000 0.00 0.00 42.13 5.68
5793 6341 2.481795 GGCTAGGTATTCGTTTGGCGTA 60.482 50.000 0.00 0.00 42.13 4.42
5794 6342 2.793232 GCTAGGTATTCGTTTGGCGTAG 59.207 50.000 0.00 0.00 42.13 3.51
5795 6343 3.489738 GCTAGGTATTCGTTTGGCGTAGA 60.490 47.826 0.00 0.00 42.13 2.59
5796 6344 2.884827 AGGTATTCGTTTGGCGTAGAC 58.115 47.619 0.00 0.00 42.13 2.59
5797 6345 1.585214 GGTATTCGTTTGGCGTAGACG 59.415 52.381 0.00 0.00 41.59 4.18
5798 6346 1.585214 GTATTCGTTTGGCGTAGACGG 59.415 52.381 3.97 0.00 41.59 4.79
5799 6347 0.244450 ATTCGTTTGGCGTAGACGGA 59.756 50.000 3.97 0.00 41.59 4.69
5800 6348 0.031857 TTCGTTTGGCGTAGACGGAA 59.968 50.000 3.97 0.00 41.59 4.30
5801 6349 0.244450 TCGTTTGGCGTAGACGGAAT 59.756 50.000 3.97 0.00 41.59 3.01
5802 6350 0.368907 CGTTTGGCGTAGACGGAATG 59.631 55.000 3.97 0.00 41.59 2.67
5803 6351 1.717194 GTTTGGCGTAGACGGAATGA 58.283 50.000 3.97 0.00 41.59 2.57
5804 6352 2.277084 GTTTGGCGTAGACGGAATGAT 58.723 47.619 3.97 0.00 41.59 2.45
5805 6353 3.450578 GTTTGGCGTAGACGGAATGATA 58.549 45.455 3.97 0.00 41.59 2.15
5806 6354 3.804786 TTGGCGTAGACGGAATGATAA 57.195 42.857 3.97 0.00 41.59 1.75
5807 6355 3.364889 TGGCGTAGACGGAATGATAAG 57.635 47.619 3.97 0.00 41.59 1.73
5808 6356 2.691526 TGGCGTAGACGGAATGATAAGT 59.308 45.455 3.97 0.00 41.59 2.24
5809 6357 3.884693 TGGCGTAGACGGAATGATAAGTA 59.115 43.478 3.97 0.00 41.59 2.24
5810 6358 4.521639 TGGCGTAGACGGAATGATAAGTAT 59.478 41.667 3.97 0.00 41.59 2.12
5811 6359 4.857588 GGCGTAGACGGAATGATAAGTATG 59.142 45.833 3.97 0.00 40.23 2.39
5812 6360 4.857588 GCGTAGACGGAATGATAAGTATGG 59.142 45.833 3.97 0.00 40.23 2.74
5813 6361 5.564259 GCGTAGACGGAATGATAAGTATGGT 60.564 44.000 3.97 0.00 40.23 3.55
5814 6362 5.856986 CGTAGACGGAATGATAAGTATGGTG 59.143 44.000 0.00 0.00 35.37 4.17
5815 6363 5.871396 AGACGGAATGATAAGTATGGTGT 57.129 39.130 0.00 0.00 0.00 4.16
5816 6364 5.844004 AGACGGAATGATAAGTATGGTGTC 58.156 41.667 0.00 0.00 0.00 3.67
5817 6365 5.362717 AGACGGAATGATAAGTATGGTGTCA 59.637 40.000 0.00 0.00 0.00 3.58
5818 6366 5.357257 ACGGAATGATAAGTATGGTGTCAC 58.643 41.667 0.00 0.00 0.00 3.67
5819 6367 4.444388 CGGAATGATAAGTATGGTGTCACG 59.556 45.833 0.00 0.00 0.00 4.35
5820 6368 5.357257 GGAATGATAAGTATGGTGTCACGT 58.643 41.667 0.00 0.00 0.00 4.49
5821 6369 6.509656 GGAATGATAAGTATGGTGTCACGTA 58.490 40.000 0.00 0.00 0.00 3.57
5822 6370 6.641314 GGAATGATAAGTATGGTGTCACGTAG 59.359 42.308 0.00 0.00 0.00 3.51
5823 6371 6.954487 ATGATAAGTATGGTGTCACGTAGA 57.046 37.500 0.00 0.00 0.00 2.59
5824 6372 6.762702 TGATAAGTATGGTGTCACGTAGAA 57.237 37.500 0.00 0.00 0.00 2.10
5825 6373 7.342769 TGATAAGTATGGTGTCACGTAGAAT 57.657 36.000 0.00 0.00 0.00 2.40
5826 6374 7.200455 TGATAAGTATGGTGTCACGTAGAATG 58.800 38.462 0.00 0.00 0.00 2.67
5827 6375 5.654603 AAGTATGGTGTCACGTAGAATGA 57.345 39.130 0.00 0.00 0.00 2.57
5828 6376 5.654603 AGTATGGTGTCACGTAGAATGAA 57.345 39.130 0.00 0.00 0.00 2.57
5829 6377 6.032956 AGTATGGTGTCACGTAGAATGAAA 57.967 37.500 0.00 0.00 0.00 2.69
5830 6378 6.640518 AGTATGGTGTCACGTAGAATGAAAT 58.359 36.000 0.00 0.00 0.00 2.17
5831 6379 7.103641 AGTATGGTGTCACGTAGAATGAAATT 58.896 34.615 0.00 0.00 40.93 1.82
5832 6380 5.605564 TGGTGTCACGTAGAATGAAATTG 57.394 39.130 0.00 0.00 36.07 2.32
5833 6381 4.454161 TGGTGTCACGTAGAATGAAATTGG 59.546 41.667 0.00 0.00 36.07 3.16
5834 6382 4.403453 GTGTCACGTAGAATGAAATTGGC 58.597 43.478 0.00 0.00 36.07 4.52
5835 6383 4.068599 TGTCACGTAGAATGAAATTGGCA 58.931 39.130 0.00 0.00 36.07 4.92
5836 6384 4.699735 TGTCACGTAGAATGAAATTGGCAT 59.300 37.500 0.00 0.00 36.07 4.40
5837 6385 5.163764 TGTCACGTAGAATGAAATTGGCATC 60.164 40.000 0.00 0.00 36.07 3.91
5838 6386 4.033932 TCACGTAGAATGAAATTGGCATCG 59.966 41.667 0.00 0.00 36.07 3.84
5839 6387 3.312421 ACGTAGAATGAAATTGGCATCGG 59.688 43.478 0.00 0.00 36.07 4.18
5840 6388 3.312421 CGTAGAATGAAATTGGCATCGGT 59.688 43.478 0.00 0.00 36.07 4.69
5841 6389 4.552767 CGTAGAATGAAATTGGCATCGGTC 60.553 45.833 0.00 0.00 36.07 4.79
5842 6390 3.624777 AGAATGAAATTGGCATCGGTCT 58.375 40.909 0.00 0.00 36.07 3.85
5843 6391 3.629398 AGAATGAAATTGGCATCGGTCTC 59.371 43.478 0.00 0.00 36.07 3.36
5844 6392 2.787473 TGAAATTGGCATCGGTCTCT 57.213 45.000 0.00 0.00 0.00 3.10
5845 6393 3.071874 TGAAATTGGCATCGGTCTCTT 57.928 42.857 0.00 0.00 0.00 2.85
5846 6394 3.009723 TGAAATTGGCATCGGTCTCTTC 58.990 45.455 0.00 0.00 0.00 2.87
5847 6395 2.044123 AATTGGCATCGGTCTCTTCC 57.956 50.000 0.00 0.00 0.00 3.46
5848 6396 0.181350 ATTGGCATCGGTCTCTTCCC 59.819 55.000 0.00 0.00 0.00 3.97
5849 6397 1.910580 TTGGCATCGGTCTCTTCCCC 61.911 60.000 0.00 0.00 0.00 4.81
5850 6398 2.506472 GCATCGGTCTCTTCCCCC 59.494 66.667 0.00 0.00 0.00 5.40
5851 6399 2.367202 GCATCGGTCTCTTCCCCCA 61.367 63.158 0.00 0.00 0.00 4.96
5852 6400 1.522569 CATCGGTCTCTTCCCCCAC 59.477 63.158 0.00 0.00 0.00 4.61
5853 6401 1.689582 ATCGGTCTCTTCCCCCACC 60.690 63.158 0.00 0.00 0.00 4.61
5854 6402 2.471084 ATCGGTCTCTTCCCCCACCA 62.471 60.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.842923 CGAGCTCAGCGGTGGGAT 61.843 66.667 20.79 13.37 0.00 3.85
72 73 3.011635 AATCTGCGAGCTCAGCGGT 62.012 57.895 27.09 17.34 41.47 5.68
73 74 2.202851 AATCTGCGAGCTCAGCGG 60.203 61.111 24.42 24.42 42.06 5.52
75 76 2.178890 CCCAATCTGCGAGCTCAGC 61.179 63.158 15.40 17.75 34.19 4.26
76 77 0.530211 CTCCCAATCTGCGAGCTCAG 60.530 60.000 15.40 5.22 35.46 3.35
77 78 1.260538 ACTCCCAATCTGCGAGCTCA 61.261 55.000 15.40 0.00 0.00 4.26
78 79 0.809241 CACTCCCAATCTGCGAGCTC 60.809 60.000 2.73 2.73 0.00 4.09
79 80 1.220206 CACTCCCAATCTGCGAGCT 59.780 57.895 0.00 0.00 0.00 4.09
80 81 2.467826 GCACTCCCAATCTGCGAGC 61.468 63.158 0.00 0.00 0.00 5.03
81 82 3.805267 GCACTCCCAATCTGCGAG 58.195 61.111 0.00 0.00 0.00 5.03
84 85 3.512516 GGCGCACTCCCAATCTGC 61.513 66.667 10.83 0.00 0.00 4.26
102 104 2.207229 TGTGTGGCGGTAGCTCAGT 61.207 57.895 0.00 0.00 44.37 3.41
109 111 2.220615 CTCGATGGTGTGTGGCGGTA 62.221 60.000 0.00 0.00 0.00 4.02
110 112 3.589654 CTCGATGGTGTGTGGCGGT 62.590 63.158 0.00 0.00 0.00 5.68
141 157 4.323477 TTCCGTGCGGTTCCCCTG 62.323 66.667 10.60 0.00 36.47 4.45
146 162 3.723348 GTGGCTTCCGTGCGGTTC 61.723 66.667 10.60 1.43 36.47 3.62
147 163 4.250305 AGTGGCTTCCGTGCGGTT 62.250 61.111 10.60 0.00 36.47 4.44
155 171 1.130561 GACGCAATAACAGTGGCTTCC 59.869 52.381 0.00 0.00 0.00 3.46
158 174 0.676782 GGGACGCAATAACAGTGGCT 60.677 55.000 0.00 0.00 0.00 4.75
192 209 1.153369 CCACCATCGAAGATGCCGT 60.153 57.895 4.60 0.00 45.12 5.68
194 211 0.107703 TCACCACCATCGAAGATGCC 60.108 55.000 4.60 0.00 45.12 4.40
195 212 1.134699 TCTCACCACCATCGAAGATGC 60.135 52.381 4.60 0.00 45.12 3.91
199 216 0.243907 ACGTCTCACCACCATCGAAG 59.756 55.000 0.00 0.00 0.00 3.79
202 219 1.446099 CCACGTCTCACCACCATCG 60.446 63.158 0.00 0.00 0.00 3.84
204 221 1.544825 CCTCCACGTCTCACCACCAT 61.545 60.000 0.00 0.00 0.00 3.55
208 225 1.606601 CCTCCTCCACGTCTCACCA 60.607 63.158 0.00 0.00 0.00 4.17
209 226 1.304217 TCCTCCTCCACGTCTCACC 60.304 63.158 0.00 0.00 0.00 4.02
287 304 4.280019 GGCCACGGAAACACCCCT 62.280 66.667 0.00 0.00 34.64 4.79
290 307 1.288752 CATTGGCCACGGAAACACC 59.711 57.895 3.88 0.00 0.00 4.16
297 314 2.260844 ATATCAGACATTGGCCACGG 57.739 50.000 3.88 2.27 0.00 4.94
342 359 5.713389 ACATTGTAAAACCCTAGCCTAAACC 59.287 40.000 0.00 0.00 0.00 3.27
343 360 6.431852 TCACATTGTAAAACCCTAGCCTAAAC 59.568 38.462 0.00 0.00 0.00 2.01
345 362 6.013206 TCTCACATTGTAAAACCCTAGCCTAA 60.013 38.462 0.00 0.00 0.00 2.69
346 363 5.486063 TCTCACATTGTAAAACCCTAGCCTA 59.514 40.000 0.00 0.00 0.00 3.93
371 388 1.419374 GCGGCAACCTAGATCGTATG 58.581 55.000 0.00 0.00 0.00 2.39
377 394 4.637771 GTTGGCGGCAACCTAGAT 57.362 55.556 36.95 0.00 0.00 1.98
393 410 1.151677 TTGGCCCCTAAGTCTGGGT 60.152 57.895 0.00 0.00 44.20 4.51
396 413 1.065126 CCTTCTTGGCCCCTAAGTCTG 60.065 57.143 0.00 0.00 0.00 3.51
403 420 4.358102 AAGACCTTCTTGGCCCCT 57.642 55.556 0.00 0.00 34.98 4.79
440 457 3.423154 CGGCGACAAGAACCAGCC 61.423 66.667 0.00 0.00 44.00 4.85
457 474 0.184692 AGGAGGCCTACTACGTACCC 59.815 60.000 18.81 4.10 34.15 3.69
461 478 1.076192 CCCAGGAGGCCTACTACGT 60.076 63.158 20.00 0.00 34.15 3.57
570 587 6.551601 TGAATTTTGCTTGGTTTTCCTAGGTA 59.448 34.615 9.08 0.00 41.82 3.08
576 593 7.087007 TGTTTTTGAATTTTGCTTGGTTTTCC 58.913 30.769 0.00 0.00 41.14 3.13
604 621 1.063469 CCTGCACGTGTTCTCGTTTTT 59.937 47.619 18.38 0.00 42.27 1.94
609 626 0.232303 GTTTCCTGCACGTGTTCTCG 59.768 55.000 18.38 0.76 0.00 4.04
623 640 1.923864 CAAGCACACCGTTTTGTTTCC 59.076 47.619 0.00 0.00 0.00 3.13
638 655 1.419762 TGGGAAACTAGTCTGCAAGCA 59.580 47.619 0.00 0.00 0.00 3.91
642 659 1.429930 TGGTGGGAAACTAGTCTGCA 58.570 50.000 0.00 0.00 0.00 4.41
643 660 2.237392 AGATGGTGGGAAACTAGTCTGC 59.763 50.000 0.00 0.00 0.00 4.26
644 661 4.223923 AGAAGATGGTGGGAAACTAGTCTG 59.776 45.833 0.00 0.00 0.00 3.51
645 662 4.430441 AGAAGATGGTGGGAAACTAGTCT 58.570 43.478 0.00 0.00 0.00 3.24
646 663 4.828072 AGAAGATGGTGGGAAACTAGTC 57.172 45.455 0.00 0.00 0.00 2.59
647 664 4.597507 TGAAGAAGATGGTGGGAAACTAGT 59.402 41.667 0.00 0.00 0.00 2.57
648 665 5.165961 TGAAGAAGATGGTGGGAAACTAG 57.834 43.478 0.00 0.00 0.00 2.57
649 666 5.560724 CTTGAAGAAGATGGTGGGAAACTA 58.439 41.667 0.00 0.00 0.00 2.24
650 667 4.401925 CTTGAAGAAGATGGTGGGAAACT 58.598 43.478 0.00 0.00 0.00 2.66
651 668 3.057245 GCTTGAAGAAGATGGTGGGAAAC 60.057 47.826 0.00 0.00 0.00 2.78
652 669 3.157087 GCTTGAAGAAGATGGTGGGAAA 58.843 45.455 0.00 0.00 0.00 3.13
653 670 2.376518 AGCTTGAAGAAGATGGTGGGAA 59.623 45.455 0.00 0.00 0.00 3.97
670 797 0.480252 AAAAGCCTCCCACTGAGCTT 59.520 50.000 0.00 0.00 39.98 3.74
702 829 9.098355 GCCTTCTAGTCTTTTTGTTTTTGAAAT 57.902 29.630 0.00 0.00 0.00 2.17
712 839 8.420374 TGATATTACGCCTTCTAGTCTTTTTG 57.580 34.615 0.00 0.00 0.00 2.44
839 970 0.035820 CCCCATTCGGAGTTTCGGAA 60.036 55.000 2.25 2.25 39.48 4.30
1510 1647 6.208007 ACAAAATTAAGCCTTAGTGGTGGTAC 59.792 38.462 0.00 0.00 38.35 3.34
1519 1660 5.201243 AGCCCCTACAAAATTAAGCCTTAG 58.799 41.667 0.00 0.00 0.00 2.18
1523 1664 3.513912 ACAAGCCCCTACAAAATTAAGCC 59.486 43.478 0.00 0.00 0.00 4.35
1621 1766 7.281774 CACCTAATGTAGCAACATGAGATCTTT 59.718 37.037 0.00 0.00 44.65 2.52
1642 1787 6.588719 AATTTGCTTAAGATTGTGCACCTA 57.411 33.333 15.69 2.34 35.01 3.08
1643 1788 5.473066 AATTTGCTTAAGATTGTGCACCT 57.527 34.783 15.69 0.57 35.01 4.00
1684 1833 2.887152 GCCCTGATAATCACAATGGGAC 59.113 50.000 0.00 0.00 35.40 4.46
1685 1834 2.513317 TGCCCTGATAATCACAATGGGA 59.487 45.455 0.00 0.00 35.40 4.37
1686 1835 2.948115 TGCCCTGATAATCACAATGGG 58.052 47.619 0.00 0.00 36.41 4.00
1687 1836 4.585581 TCAATGCCCTGATAATCACAATGG 59.414 41.667 0.00 0.00 0.00 3.16
1688 1837 5.777850 TCAATGCCCTGATAATCACAATG 57.222 39.130 0.00 0.00 0.00 2.82
1689 1838 7.005902 TGTATCAATGCCCTGATAATCACAAT 58.994 34.615 6.45 0.00 39.43 2.71
1690 1839 6.363882 TGTATCAATGCCCTGATAATCACAA 58.636 36.000 6.45 0.00 39.43 3.33
1691 1840 5.939447 TGTATCAATGCCCTGATAATCACA 58.061 37.500 6.45 1.81 39.43 3.58
1692 1841 6.000219 ACTGTATCAATGCCCTGATAATCAC 59.000 40.000 6.45 0.00 39.43 3.06
1693 1842 5.999600 CACTGTATCAATGCCCTGATAATCA 59.000 40.000 6.45 2.41 39.43 2.57
1694 1843 6.233434 TCACTGTATCAATGCCCTGATAATC 58.767 40.000 6.45 0.00 39.43 1.75
1695 1844 6.191657 TCACTGTATCAATGCCCTGATAAT 57.808 37.500 6.45 0.00 39.43 1.28
1696 1845 5.628797 TCACTGTATCAATGCCCTGATAA 57.371 39.130 6.45 0.00 39.43 1.75
1697 1846 5.628797 TTCACTGTATCAATGCCCTGATA 57.371 39.130 1.67 1.67 37.27 2.15
1698 1847 4.508551 TTCACTGTATCAATGCCCTGAT 57.491 40.909 3.41 3.41 39.41 2.90
1699 1848 3.998913 TTCACTGTATCAATGCCCTGA 57.001 42.857 0.00 0.00 0.00 3.86
1700 1849 4.201657 TCATTCACTGTATCAATGCCCTG 58.798 43.478 2.84 0.00 0.00 4.45
1701 1850 4.508551 TCATTCACTGTATCAATGCCCT 57.491 40.909 2.84 0.00 0.00 5.19
1702 1851 4.581824 ACATCATTCACTGTATCAATGCCC 59.418 41.667 2.84 0.00 0.00 5.36
1703 1852 5.297527 TGACATCATTCACTGTATCAATGCC 59.702 40.000 2.84 0.00 0.00 4.40
1844 1994 7.547227 ACACCAAGAAATGAACTATAAATGCC 58.453 34.615 0.00 0.00 0.00 4.40
1896 2046 3.165071 GGAAGAATTTTGAGGGCCTGAA 58.835 45.455 12.95 5.83 0.00 3.02
1954 2104 6.732896 AACTCCTCCAAAGATATACACGAT 57.267 37.500 0.00 0.00 0.00 3.73
2044 2194 4.706476 TGGATGTCCTTCCATTTTGTCATC 59.294 41.667 0.09 0.00 40.90 2.92
2060 2210 6.258947 GCAATCTTCTTTAGGTACTGGATGTC 59.741 42.308 0.00 0.00 41.52 3.06
2250 2400 7.001674 TGAAGGCCTTTGAGAACTAATAACAA 58.998 34.615 21.54 0.00 0.00 2.83
2405 2555 3.059352 AGGGATGTGTAAGACAAGTGC 57.941 47.619 0.00 0.00 38.36 4.40
2409 2559 6.182507 AGTGTAAAGGGATGTGTAAGACAA 57.817 37.500 0.00 0.00 38.36 3.18
2425 2575 5.104374 GCAAGCGTGGTACTATAGTGTAAA 58.896 41.667 15.90 0.00 0.00 2.01
2443 2593 3.896648 TGTGTAAGCAACTAAGCAAGC 57.103 42.857 0.00 0.00 36.85 4.01
2487 2874 6.286758 TGCAAAAAGAAAGCACAATTGGATA 58.713 32.000 10.83 0.00 32.55 2.59
2556 2943 6.772716 AGCAGTTCAAAAGGAAGTTTGATAGA 59.227 34.615 1.52 0.00 44.71 1.98
2557 2944 6.974965 AGCAGTTCAAAAGGAAGTTTGATAG 58.025 36.000 1.52 0.00 44.71 2.08
2636 3062 4.674475 ACATGGTCGGTAAAACAACAAAC 58.326 39.130 0.00 0.00 0.00 2.93
2651 3077 5.638596 AGGGTTTTCGAAATAACATGGTC 57.361 39.130 12.12 0.00 0.00 4.02
2655 3081 7.229907 ACACACTTAGGGTTTTCGAAATAACAT 59.770 33.333 12.12 6.03 0.00 2.71
2664 3090 5.934935 AATACACACACTTAGGGTTTTCG 57.065 39.130 0.00 0.00 0.00 3.46
2727 3154 2.415168 GCATAGCAAAGTGAAGCACGTA 59.585 45.455 0.00 0.00 39.64 3.57
2747 3174 6.442513 AGTAAAGATGATACAGGCAAAAGC 57.557 37.500 0.00 0.00 0.00 3.51
2858 3285 6.299141 TGGCATTCCTGGATATTCTCTTAAC 58.701 40.000 0.00 0.00 0.00 2.01
2884 3311 8.585018 TGCATATAAATAGCTAGCTACTGTCAA 58.415 33.333 26.41 11.14 0.00 3.18
2915 3342 1.609208 AGCACGAATTGAACTGGCTT 58.391 45.000 0.00 0.00 0.00 4.35
2929 3356 4.563184 CCTAAACTACTAGAAGCAAGCACG 59.437 45.833 0.00 0.00 0.00 5.34
2936 3363 5.602628 CATGGGTCCTAAACTACTAGAAGC 58.397 45.833 0.00 0.00 0.00 3.86
2946 3373 6.412214 TCTTAACTAAGCATGGGTCCTAAAC 58.588 40.000 0.00 0.00 33.40 2.01
3248 3675 5.564550 ACTAAGGATTCAACAATGACAGCT 58.435 37.500 0.00 0.00 34.61 4.24
3545 3972 7.228706 AGTTTTAAGGTACAGGAACATCAAGTG 59.771 37.037 0.00 0.00 0.00 3.16
3546 3973 7.287810 AGTTTTAAGGTACAGGAACATCAAGT 58.712 34.615 0.00 0.00 0.00 3.16
3618 4045 8.906867 ACAGAACACCATTTCCAAGATAATATG 58.093 33.333 0.00 0.00 0.00 1.78
3660 4090 8.570068 ACTGAAGGAAACACAGTTAAAACTAA 57.430 30.769 0.00 0.00 43.83 2.24
3686 4200 6.584184 CAGAGTTACTTGCATACATATCGAGG 59.416 42.308 0.00 0.00 0.00 4.63
3864 4378 4.502282 CACAAGAACAAAAATTACGCTGCA 59.498 37.500 0.00 0.00 0.00 4.41
3940 4454 7.118723 ACATGAGGGCAGAATAATTTCTAACA 58.881 34.615 0.00 0.00 40.28 2.41
3954 4468 1.093159 GAAGCTCAACATGAGGGCAG 58.907 55.000 15.23 0.00 44.43 4.85
4023 4537 4.299586 TGTTAACAGGCATCATCCAGAA 57.700 40.909 3.59 0.00 0.00 3.02
4082 4596 6.353082 CCAAGACCTGGTATGGAGAAAGTATT 60.353 42.308 21.03 0.00 40.78 1.89
4086 4600 3.370953 CCCAAGACCTGGTATGGAGAAAG 60.371 52.174 25.21 10.03 44.76 2.62
4178 4692 5.715279 TGTCTGTACCTGACTAGTATTGCTT 59.285 40.000 14.44 0.00 34.25 3.91
4232 4746 6.931840 GTGATGATCTGTAAGGGTATTCTTCC 59.068 42.308 0.00 0.00 0.00 3.46
4246 4760 1.824852 TGTACCGCTGTGATGATCTGT 59.175 47.619 0.00 0.00 0.00 3.41
4454 4979 2.004693 CCGAAATAGGGGTGGGGGT 61.005 63.158 0.00 0.00 0.00 4.95
4511 5047 3.396611 GGGAAGGCCAATATAACCCTGTA 59.603 47.826 5.01 0.00 35.15 2.74
4525 5061 0.106167 GGAACCATAAGGGGAAGGCC 60.106 60.000 0.00 0.00 42.91 5.19
4587 5127 1.746239 GCATTGCATTTGTGCCCCC 60.746 57.895 3.15 0.00 32.88 5.40
4591 5131 3.680937 ACACTATTGCATTGCATTTGTGC 59.319 39.130 30.14 6.87 43.52 4.57
4592 5132 4.687018 ACACACTATTGCATTGCATTTGTG 59.313 37.500 29.32 29.32 44.40 3.33
4690 5230 5.183331 GGTTTTCTACCTTTGGGAACTCATC 59.817 44.000 0.00 0.00 44.10 2.92
4794 5334 5.320549 AGCTAACGGAGAAACTAATCGAA 57.679 39.130 0.00 0.00 0.00 3.71
4810 5350 1.874872 TGTACGCCACCAAAAGCTAAC 59.125 47.619 0.00 0.00 0.00 2.34
4888 5428 2.745968 AGTTCCTGAGTCCTGAGATCC 58.254 52.381 0.00 0.00 0.00 3.36
4905 5445 2.054799 TCCAGTCAGGCTTACCAAGTT 58.945 47.619 0.00 0.00 39.06 2.66
4984 5524 5.734855 AATAACCACGTACATCTGCAATC 57.265 39.130 0.00 0.00 0.00 2.67
4987 5527 5.950758 AAAAATAACCACGTACATCTGCA 57.049 34.783 0.00 0.00 0.00 4.41
5032 5572 5.865552 GTGTTCATCTGCAATAACAGCAATT 59.134 36.000 3.79 0.00 42.17 2.32
5044 5584 3.769739 AGGTAACAGTGTTCATCTGCA 57.230 42.857 12.82 0.00 41.41 4.41
5201 5744 8.037382 AGAAATGACAATCATGTGTTACAGAG 57.963 34.615 0.00 0.00 40.74 3.35
5210 5753 4.223477 CCCCCAAAGAAATGACAATCATGT 59.777 41.667 0.00 0.00 44.25 3.21
5216 5759 3.893753 TCTCCCCCAAAGAAATGACAA 57.106 42.857 0.00 0.00 0.00 3.18
5273 5816 5.730550 AGACCGAAGTGCAGTAAAATCATA 58.269 37.500 0.00 0.00 0.00 2.15
5275 5818 3.994392 GAGACCGAAGTGCAGTAAAATCA 59.006 43.478 0.00 0.00 0.00 2.57
5283 5826 0.600557 ACAGAGAGACCGAAGTGCAG 59.399 55.000 0.00 0.00 0.00 4.41
5312 5858 7.257790 TCCAACTTTTCAGGATCTAGAATGA 57.742 36.000 0.00 0.00 0.00 2.57
5319 5865 7.364144 GGCAAATATTCCAACTTTTCAGGATCT 60.364 37.037 0.00 0.00 0.00 2.75
5338 5884 8.871629 TTTAACAGAATAGAAGGTGGCAAATA 57.128 30.769 0.00 0.00 0.00 1.40
5394 5940 6.311723 ACAAATTGCTTAACTGCGTGTATAC 58.688 36.000 0.00 0.00 35.36 1.47
5395 5941 6.489127 ACAAATTGCTTAACTGCGTGTATA 57.511 33.333 0.00 0.00 35.36 1.47
5398 5944 3.708563 ACAAATTGCTTAACTGCGTGT 57.291 38.095 0.00 0.00 35.36 4.49
5399 5945 6.689178 AATAACAAATTGCTTAACTGCGTG 57.311 33.333 0.00 0.00 35.36 5.34
5400 5946 7.707774 AAAATAACAAATTGCTTAACTGCGT 57.292 28.000 0.00 0.00 35.36 5.24
5426 5972 2.165437 GCTGGACAAGACCAAAAACACA 59.835 45.455 0.00 0.00 39.59 3.72
5475 6021 1.165270 GTTTCCTCCGACCATTGGTG 58.835 55.000 14.44 5.72 35.25 4.17
5487 6033 2.676176 GCTGGTTACGGTAGGTTTCCTC 60.676 54.545 0.00 0.00 34.61 3.71
5492 6038 0.322648 GGTGCTGGTTACGGTAGGTT 59.677 55.000 0.00 0.00 0.00 3.50
5493 6039 0.832983 TGGTGCTGGTTACGGTAGGT 60.833 55.000 0.00 0.00 0.00 3.08
5494 6040 0.108329 CTGGTGCTGGTTACGGTAGG 60.108 60.000 0.00 0.00 0.00 3.18
5495 6041 0.739813 GCTGGTGCTGGTTACGGTAG 60.740 60.000 0.00 0.00 36.03 3.18
5496 6042 1.294138 GCTGGTGCTGGTTACGGTA 59.706 57.895 0.00 0.00 36.03 4.02
5497 6043 2.032071 GCTGGTGCTGGTTACGGT 59.968 61.111 0.00 0.00 36.03 4.83
5498 6044 2.746277 GGCTGGTGCTGGTTACGG 60.746 66.667 0.00 0.00 39.59 4.02
5499 6045 1.169661 TTTGGCTGGTGCTGGTTACG 61.170 55.000 0.00 0.00 39.59 3.18
5500 6046 0.598065 CTTTGGCTGGTGCTGGTTAC 59.402 55.000 0.00 0.00 39.59 2.50
5582 6130 6.037500 TGTGAATCACAGCTAGATATGCAAAC 59.962 38.462 12.63 0.00 39.62 2.93
5605 6153 1.142870 TGCTTGGGCAACTACTTCTGT 59.857 47.619 0.00 0.00 46.36 3.41
5620 6168 0.528249 GTGTGTGTTGCCCTTGCTTG 60.528 55.000 0.00 0.00 38.71 4.01
5621 6169 0.969917 TGTGTGTGTTGCCCTTGCTT 60.970 50.000 0.00 0.00 38.71 3.91
5622 6170 0.756442 ATGTGTGTGTTGCCCTTGCT 60.756 50.000 0.00 0.00 38.71 3.91
5623 6171 0.318955 GATGTGTGTGTTGCCCTTGC 60.319 55.000 0.00 0.00 38.26 4.01
5624 6172 0.314935 GGATGTGTGTGTTGCCCTTG 59.685 55.000 0.00 0.00 0.00 3.61
5626 6174 1.228552 GGGATGTGTGTGTTGCCCT 60.229 57.895 0.00 0.00 32.78 5.19
5627 6175 0.899717 ATGGGATGTGTGTGTTGCCC 60.900 55.000 0.00 0.00 36.11 5.36
5628 6176 0.244450 CATGGGATGTGTGTGTTGCC 59.756 55.000 0.00 0.00 0.00 4.52
5630 6178 3.731652 AAACATGGGATGTGTGTGTTG 57.268 42.857 0.00 0.00 44.07 3.33
5631 6179 4.278170 CACTAAACATGGGATGTGTGTGTT 59.722 41.667 0.00 0.00 44.07 3.32
5632 6180 3.820467 CACTAAACATGGGATGTGTGTGT 59.180 43.478 0.00 0.00 44.07 3.72
5633 6181 3.191162 CCACTAAACATGGGATGTGTGTG 59.809 47.826 0.00 0.00 44.07 3.82
5656 6204 0.032952 TCGCACAAGGTACAGTCCAC 59.967 55.000 0.00 0.00 0.00 4.02
5658 6206 1.007336 CGTCGCACAAGGTACAGTCC 61.007 60.000 0.00 0.00 0.00 3.85
5665 6213 1.375551 AAGAAAACGTCGCACAAGGT 58.624 45.000 0.00 0.00 0.00 3.50
5666 6214 2.108700 CAAAGAAAACGTCGCACAAGG 58.891 47.619 0.00 0.00 0.00 3.61
5667 6215 2.776225 GTCAAAGAAAACGTCGCACAAG 59.224 45.455 0.00 0.00 0.00 3.16
5668 6216 2.159824 TGTCAAAGAAAACGTCGCACAA 59.840 40.909 0.00 0.00 0.00 3.33
5669 6217 1.732809 TGTCAAAGAAAACGTCGCACA 59.267 42.857 0.00 0.00 0.00 4.57
5670 6218 2.445453 TGTCAAAGAAAACGTCGCAC 57.555 45.000 0.00 0.00 0.00 5.34
5671 6219 2.476519 GGTTGTCAAAGAAAACGTCGCA 60.477 45.455 0.00 0.00 31.05 5.10
5672 6220 2.106418 GGTTGTCAAAGAAAACGTCGC 58.894 47.619 0.00 0.00 31.05 5.19
5673 6221 3.392769 TGGTTGTCAAAGAAAACGTCG 57.607 42.857 0.00 0.00 31.05 5.12
5674 6222 3.966218 CGATGGTTGTCAAAGAAAACGTC 59.034 43.478 0.00 0.00 31.05 4.34
5675 6223 3.375922 ACGATGGTTGTCAAAGAAAACGT 59.624 39.130 0.00 0.00 31.05 3.99
5676 6224 3.947626 ACGATGGTTGTCAAAGAAAACG 58.052 40.909 0.00 0.00 31.05 3.60
5677 6225 4.036380 AGGACGATGGTTGTCAAAGAAAAC 59.964 41.667 0.00 0.00 38.10 2.43
5678 6226 4.204012 AGGACGATGGTTGTCAAAGAAAA 58.796 39.130 0.00 0.00 38.10 2.29
5679 6227 3.815809 AGGACGATGGTTGTCAAAGAAA 58.184 40.909 0.00 0.00 38.10 2.52
5680 6228 3.485463 AGGACGATGGTTGTCAAAGAA 57.515 42.857 0.00 0.00 38.10 2.52
5681 6229 3.485463 AAGGACGATGGTTGTCAAAGA 57.515 42.857 0.00 0.00 38.10 2.52
5682 6230 3.315191 ACAAAGGACGATGGTTGTCAAAG 59.685 43.478 0.00 0.00 38.10 2.77
5683 6231 3.283751 ACAAAGGACGATGGTTGTCAAA 58.716 40.909 0.00 0.00 38.10 2.69
5684 6232 2.925724 ACAAAGGACGATGGTTGTCAA 58.074 42.857 0.00 0.00 38.10 3.18
5685 6233 2.631160 ACAAAGGACGATGGTTGTCA 57.369 45.000 0.00 0.00 38.10 3.58
5686 6234 3.058914 CAGAACAAAGGACGATGGTTGTC 60.059 47.826 0.00 0.00 33.18 3.18
5687 6235 2.878406 CAGAACAAAGGACGATGGTTGT 59.122 45.455 0.00 0.00 35.77 3.32
5688 6236 2.226437 CCAGAACAAAGGACGATGGTTG 59.774 50.000 0.00 0.00 0.00 3.77
5689 6237 2.504367 CCAGAACAAAGGACGATGGTT 58.496 47.619 0.00 0.00 0.00 3.67
5690 6238 1.882352 GCCAGAACAAAGGACGATGGT 60.882 52.381 0.00 0.00 0.00 3.55
5691 6239 0.804989 GCCAGAACAAAGGACGATGG 59.195 55.000 0.00 0.00 0.00 3.51
5692 6240 0.443869 CGCCAGAACAAAGGACGATG 59.556 55.000 0.00 0.00 0.00 3.84
5693 6241 0.673644 CCGCCAGAACAAAGGACGAT 60.674 55.000 0.00 0.00 0.00 3.73
5694 6242 1.301401 CCGCCAGAACAAAGGACGA 60.301 57.895 0.00 0.00 0.00 4.20
5695 6243 2.966309 GCCGCCAGAACAAAGGACG 61.966 63.158 0.00 0.00 0.00 4.79
5696 6244 2.626780 GGCCGCCAGAACAAAGGAC 61.627 63.158 3.91 0.00 0.00 3.85
5697 6245 2.282180 GGCCGCCAGAACAAAGGA 60.282 61.111 3.91 0.00 0.00 3.36
5698 6246 3.737172 CGGCCGCCAGAACAAAGG 61.737 66.667 14.67 0.00 0.00 3.11
5699 6247 2.551912 AACGGCCGCCAGAACAAAG 61.552 57.895 28.58 0.00 0.00 2.77
5700 6248 2.517402 AACGGCCGCCAGAACAAA 60.517 55.556 28.58 0.00 0.00 2.83
5701 6249 3.283684 CAACGGCCGCCAGAACAA 61.284 61.111 28.58 0.00 0.00 2.83
5715 6263 3.647771 ACCCCTCTTCCCGGCAAC 61.648 66.667 0.00 0.00 0.00 4.17
5716 6264 3.646715 CACCCCTCTTCCCGGCAA 61.647 66.667 0.00 0.00 0.00 4.52
5719 6267 2.366972 ATCCACCCCTCTTCCCGG 60.367 66.667 0.00 0.00 0.00 5.73
5720 6268 1.383248 AGATCCACCCCTCTTCCCG 60.383 63.158 0.00 0.00 0.00 5.14
5721 6269 1.057275 GGAGATCCACCCCTCTTCCC 61.057 65.000 0.00 0.00 35.64 3.97
5722 6270 0.326618 TGGAGATCCACCCCTCTTCC 60.327 60.000 0.00 0.00 42.01 3.46
5723 6271 3.324246 TGGAGATCCACCCCTCTTC 57.676 57.895 0.00 0.00 42.01 2.87
5733 6281 2.954989 GCAGGGAGAAAAATGGAGATCC 59.045 50.000 0.00 0.00 0.00 3.36
5734 6282 2.954989 GGCAGGGAGAAAAATGGAGATC 59.045 50.000 0.00 0.00 0.00 2.75
5735 6283 2.584498 AGGCAGGGAGAAAAATGGAGAT 59.416 45.455 0.00 0.00 0.00 2.75
5736 6284 1.995542 AGGCAGGGAGAAAAATGGAGA 59.004 47.619 0.00 0.00 0.00 3.71
5737 6285 2.521547 AGGCAGGGAGAAAAATGGAG 57.478 50.000 0.00 0.00 0.00 3.86
5738 6286 2.647299 TGTAGGCAGGGAGAAAAATGGA 59.353 45.455 0.00 0.00 0.00 3.41
5739 6287 2.755103 GTGTAGGCAGGGAGAAAAATGG 59.245 50.000 0.00 0.00 0.00 3.16
5740 6288 3.420893 TGTGTAGGCAGGGAGAAAAATG 58.579 45.455 0.00 0.00 0.00 2.32
5741 6289 3.806949 TGTGTAGGCAGGGAGAAAAAT 57.193 42.857 0.00 0.00 0.00 1.82
5742 6290 3.806949 ATGTGTAGGCAGGGAGAAAAA 57.193 42.857 0.00 0.00 0.00 1.94
5743 6291 4.919774 TTATGTGTAGGCAGGGAGAAAA 57.080 40.909 0.00 0.00 0.00 2.29
5744 6292 4.919774 TTTATGTGTAGGCAGGGAGAAA 57.080 40.909 0.00 0.00 0.00 2.52
5745 6293 4.324254 CCTTTTATGTGTAGGCAGGGAGAA 60.324 45.833 0.00 0.00 0.00 2.87
5746 6294 3.199946 CCTTTTATGTGTAGGCAGGGAGA 59.800 47.826 0.00 0.00 0.00 3.71
5747 6295 3.054361 ACCTTTTATGTGTAGGCAGGGAG 60.054 47.826 0.00 0.00 32.08 4.30
5748 6296 2.916934 ACCTTTTATGTGTAGGCAGGGA 59.083 45.455 0.00 0.00 32.08 4.20
5749 6297 3.016736 CACCTTTTATGTGTAGGCAGGG 58.983 50.000 0.00 0.00 32.08 4.45
5750 6298 3.016736 CCACCTTTTATGTGTAGGCAGG 58.983 50.000 0.00 0.00 32.08 4.85
5751 6299 3.016736 CCCACCTTTTATGTGTAGGCAG 58.983 50.000 0.00 0.00 32.08 4.85
5752 6300 2.291282 CCCCACCTTTTATGTGTAGGCA 60.291 50.000 0.00 0.00 32.08 4.75
5753 6301 2.375146 CCCCACCTTTTATGTGTAGGC 58.625 52.381 0.00 0.00 32.08 3.93
5754 6302 2.025321 AGCCCCACCTTTTATGTGTAGG 60.025 50.000 0.00 0.00 35.14 3.18
5755 6303 3.366052 AGCCCCACCTTTTATGTGTAG 57.634 47.619 0.00 0.00 31.71 2.74
5756 6304 3.201266 CCTAGCCCCACCTTTTATGTGTA 59.799 47.826 0.00 0.00 31.71 2.90
5757 6305 2.025321 CCTAGCCCCACCTTTTATGTGT 60.025 50.000 0.00 0.00 31.71 3.72
5758 6306 2.025321 ACCTAGCCCCACCTTTTATGTG 60.025 50.000 0.00 0.00 0.00 3.21
5759 6307 2.284770 ACCTAGCCCCACCTTTTATGT 58.715 47.619 0.00 0.00 0.00 2.29
5760 6308 4.724279 ATACCTAGCCCCACCTTTTATG 57.276 45.455 0.00 0.00 0.00 1.90
5761 6309 4.202430 CGAATACCTAGCCCCACCTTTTAT 60.202 45.833 0.00 0.00 0.00 1.40
5762 6310 3.135167 CGAATACCTAGCCCCACCTTTTA 59.865 47.826 0.00 0.00 0.00 1.52
5763 6311 2.092592 CGAATACCTAGCCCCACCTTTT 60.093 50.000 0.00 0.00 0.00 2.27
5764 6312 1.489230 CGAATACCTAGCCCCACCTTT 59.511 52.381 0.00 0.00 0.00 3.11
5765 6313 1.129058 CGAATACCTAGCCCCACCTT 58.871 55.000 0.00 0.00 0.00 3.50
5766 6314 0.031414 ACGAATACCTAGCCCCACCT 60.031 55.000 0.00 0.00 0.00 4.00
5767 6315 0.835276 AACGAATACCTAGCCCCACC 59.165 55.000 0.00 0.00 0.00 4.61
5768 6316 2.285977 CAAACGAATACCTAGCCCCAC 58.714 52.381 0.00 0.00 0.00 4.61
5769 6317 1.210967 CCAAACGAATACCTAGCCCCA 59.789 52.381 0.00 0.00 0.00 4.96
5770 6318 1.963172 CCAAACGAATACCTAGCCCC 58.037 55.000 0.00 0.00 0.00 5.80
5771 6319 1.306148 GCCAAACGAATACCTAGCCC 58.694 55.000 0.00 0.00 0.00 5.19
5784 6332 1.717194 TCATTCCGTCTACGCCAAAC 58.283 50.000 0.00 0.00 38.18 2.93
5785 6333 2.684001 ATCATTCCGTCTACGCCAAA 57.316 45.000 0.00 0.00 38.18 3.28
5786 6334 3.131577 ACTTATCATTCCGTCTACGCCAA 59.868 43.478 0.00 0.00 38.18 4.52
5787 6335 2.691526 ACTTATCATTCCGTCTACGCCA 59.308 45.455 0.00 0.00 38.18 5.69
5788 6336 3.366440 ACTTATCATTCCGTCTACGCC 57.634 47.619 0.00 0.00 38.18 5.68
5789 6337 4.857588 CCATACTTATCATTCCGTCTACGC 59.142 45.833 0.00 0.00 38.18 4.42
5790 6338 5.856986 CACCATACTTATCATTCCGTCTACG 59.143 44.000 0.00 0.00 39.44 3.51
5791 6339 6.746120 ACACCATACTTATCATTCCGTCTAC 58.254 40.000 0.00 0.00 0.00 2.59
5792 6340 6.548251 TGACACCATACTTATCATTCCGTCTA 59.452 38.462 0.00 0.00 0.00 2.59
5793 6341 5.362717 TGACACCATACTTATCATTCCGTCT 59.637 40.000 0.00 0.00 0.00 4.18
5794 6342 5.462398 GTGACACCATACTTATCATTCCGTC 59.538 44.000 0.00 0.00 0.00 4.79
5795 6343 5.357257 GTGACACCATACTTATCATTCCGT 58.643 41.667 0.00 0.00 0.00 4.69
5796 6344 4.444388 CGTGACACCATACTTATCATTCCG 59.556 45.833 0.00 0.00 0.00 4.30
5797 6345 5.357257 ACGTGACACCATACTTATCATTCC 58.643 41.667 0.00 0.00 0.00 3.01
5798 6346 7.423199 TCTACGTGACACCATACTTATCATTC 58.577 38.462 0.00 0.00 0.00 2.67
5799 6347 7.342769 TCTACGTGACACCATACTTATCATT 57.657 36.000 0.00 0.00 0.00 2.57
5800 6348 6.954487 TCTACGTGACACCATACTTATCAT 57.046 37.500 0.00 0.00 0.00 2.45
5801 6349 6.762702 TTCTACGTGACACCATACTTATCA 57.237 37.500 0.00 0.00 0.00 2.15
5802 6350 7.423199 TCATTCTACGTGACACCATACTTATC 58.577 38.462 0.00 0.00 0.00 1.75
5803 6351 7.342769 TCATTCTACGTGACACCATACTTAT 57.657 36.000 0.00 0.00 0.00 1.73
5804 6352 6.762702 TCATTCTACGTGACACCATACTTA 57.237 37.500 0.00 0.00 0.00 2.24
5805 6353 5.654603 TCATTCTACGTGACACCATACTT 57.345 39.130 0.00 0.00 0.00 2.24
5806 6354 5.654603 TTCATTCTACGTGACACCATACT 57.345 39.130 0.00 0.00 0.00 2.12
5807 6355 6.903883 ATTTCATTCTACGTGACACCATAC 57.096 37.500 0.00 0.00 0.00 2.39
5808 6356 6.315144 CCAATTTCATTCTACGTGACACCATA 59.685 38.462 0.00 0.00 0.00 2.74
5809 6357 5.123820 CCAATTTCATTCTACGTGACACCAT 59.876 40.000 0.00 0.00 0.00 3.55
5810 6358 4.454161 CCAATTTCATTCTACGTGACACCA 59.546 41.667 0.00 0.00 0.00 4.17
5811 6359 4.671766 GCCAATTTCATTCTACGTGACACC 60.672 45.833 0.00 0.00 0.00 4.16
5812 6360 4.083537 TGCCAATTTCATTCTACGTGACAC 60.084 41.667 0.00 0.00 0.00 3.67
5813 6361 4.068599 TGCCAATTTCATTCTACGTGACA 58.931 39.130 0.00 0.00 0.00 3.58
5814 6362 4.678509 TGCCAATTTCATTCTACGTGAC 57.321 40.909 0.00 0.00 0.00 3.67
5815 6363 4.033932 CGATGCCAATTTCATTCTACGTGA 59.966 41.667 0.00 0.00 0.00 4.35
5816 6364 4.274069 CGATGCCAATTTCATTCTACGTG 58.726 43.478 0.00 0.00 0.00 4.49
5817 6365 3.312421 CCGATGCCAATTTCATTCTACGT 59.688 43.478 0.00 0.00 0.00 3.57
5818 6366 3.312421 ACCGATGCCAATTTCATTCTACG 59.688 43.478 0.00 0.00 0.00 3.51
5819 6367 4.576463 AGACCGATGCCAATTTCATTCTAC 59.424 41.667 0.00 0.00 0.00 2.59
5820 6368 4.780815 AGACCGATGCCAATTTCATTCTA 58.219 39.130 0.00 0.00 0.00 2.10
5821 6369 3.624777 AGACCGATGCCAATTTCATTCT 58.375 40.909 0.00 0.00 0.00 2.40
5822 6370 3.629398 AGAGACCGATGCCAATTTCATTC 59.371 43.478 0.00 0.00 0.00 2.67
5823 6371 3.624777 AGAGACCGATGCCAATTTCATT 58.375 40.909 0.00 0.00 0.00 2.57
5824 6372 3.287867 AGAGACCGATGCCAATTTCAT 57.712 42.857 0.00 0.00 0.00 2.57
5825 6373 2.787473 AGAGACCGATGCCAATTTCA 57.213 45.000 0.00 0.00 0.00 2.69
5826 6374 2.356069 GGAAGAGACCGATGCCAATTTC 59.644 50.000 0.00 0.00 0.00 2.17
5827 6375 2.369394 GGAAGAGACCGATGCCAATTT 58.631 47.619 0.00 0.00 0.00 1.82
5828 6376 1.408822 GGGAAGAGACCGATGCCAATT 60.409 52.381 0.00 0.00 0.00 2.32
5829 6377 0.181350 GGGAAGAGACCGATGCCAAT 59.819 55.000 0.00 0.00 0.00 3.16
5830 6378 1.602237 GGGAAGAGACCGATGCCAA 59.398 57.895 0.00 0.00 0.00 4.52
5831 6379 2.367202 GGGGAAGAGACCGATGCCA 61.367 63.158 0.00 0.00 0.00 4.92
5832 6380 2.506472 GGGGAAGAGACCGATGCC 59.494 66.667 0.00 0.00 0.00 4.40
5833 6381 2.367202 TGGGGGAAGAGACCGATGC 61.367 63.158 0.00 0.00 0.00 3.91
5834 6382 1.522569 GTGGGGGAAGAGACCGATG 59.477 63.158 0.00 0.00 0.00 3.84
5835 6383 1.689582 GGTGGGGGAAGAGACCGAT 60.690 63.158 0.00 0.00 0.00 4.18
5836 6384 2.284405 GGTGGGGGAAGAGACCGA 60.284 66.667 0.00 0.00 0.00 4.69
5837 6385 2.606519 TGGTGGGGGAAGAGACCG 60.607 66.667 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.