Multiple sequence alignment - TraesCS5A01G265400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G265400 chr5A 100.000 5883 0 0 1 5883 477219861 477225743 0.000000e+00 10864
1 TraesCS5A01G265400 chr5A 89.943 1054 71 15 82 1108 477212570 477213615 0.000000e+00 1327
2 TraesCS5A01G265400 chr5A 75.215 2328 522 39 2286 4590 367269835 367272130 0.000000e+00 1051
3 TraesCS5A01G265400 chr5A 93.421 76 3 2 1528 1602 477221326 477221400 1.730000e-20 111
4 TraesCS5A01G265400 chr5A 93.421 76 3 2 1466 1540 477221388 477221462 1.730000e-20 111
5 TraesCS5A01G265400 chr5B 94.492 3994 156 37 1931 5878 449129592 449133567 0.000000e+00 6098
6 TraesCS5A01G265400 chr5B 75.769 2307 504 38 2286 4569 316152143 316154417 0.000000e+00 1112
7 TraesCS5A01G265400 chr5B 91.191 806 39 13 623 1418 449128314 449129097 0.000000e+00 1066
8 TraesCS5A01G265400 chr5B 87.965 457 42 8 1541 1986 449129138 449129592 1.450000e-145 527
9 TraesCS5A01G265400 chr5B 88.759 427 39 6 82 504 449127792 449128213 1.130000e-141 514
10 TraesCS5A01G265400 chr5B 88.696 115 13 0 2971 3085 37449478 37449364 2.210000e-29 141
11 TraesCS5A01G265400 chr5D 97.628 2993 62 7 1931 4915 376178094 376181085 0.000000e+00 5125
12 TraesCS5A01G265400 chr5D 87.042 1119 82 31 82 1167 376175949 376177037 0.000000e+00 1205
13 TraesCS5A01G265400 chr5D 75.215 2328 522 40 2286 4590 278137562 278139857 0.000000e+00 1051
14 TraesCS5A01G265400 chr5D 92.553 470 27 7 5117 5585 376181085 376181547 0.000000e+00 667
15 TraesCS5A01G265400 chr5D 88.571 455 35 7 1541 1986 376177648 376178094 2.410000e-148 536
16 TraesCS5A01G265400 chr5D 90.301 299 16 2 1165 1463 376177357 376177642 4.300000e-101 379
17 TraesCS5A01G265400 chr5D 87.742 310 28 5 5580 5881 376184127 376184434 2.610000e-93 353
18 TraesCS5A01G265400 chr5D 89.952 209 17 3 82 289 376174997 376175202 3.500000e-67 267
19 TraesCS5A01G265400 chr1B 90.826 109 10 0 2971 3079 633293451 633293559 4.750000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G265400 chr5A 477219861 477225743 5882 False 10864.000000 10864 100.000000 1 5883 1 chr5A.!!$F3 5882
1 TraesCS5A01G265400 chr5A 477212570 477213615 1045 False 1327.000000 1327 89.943000 82 1108 1 chr5A.!!$F2 1026
2 TraesCS5A01G265400 chr5A 367269835 367272130 2295 False 1051.000000 1051 75.215000 2286 4590 1 chr5A.!!$F1 2304
3 TraesCS5A01G265400 chr5B 449127792 449133567 5775 False 2051.250000 6098 90.601750 82 5878 4 chr5B.!!$F2 5796
4 TraesCS5A01G265400 chr5B 316152143 316154417 2274 False 1112.000000 1112 75.769000 2286 4569 1 chr5B.!!$F1 2283
5 TraesCS5A01G265400 chr5D 376174997 376184434 9437 False 1218.857143 5125 90.541286 82 5881 7 chr5D.!!$F2 5799
6 TraesCS5A01G265400 chr5D 278137562 278139857 2295 False 1051.000000 1051 75.215000 2286 4590 1 chr5D.!!$F1 2304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.102120 CGCTCTCCACTCACATCTCC 59.898 60.000 0.00 0.00 0.00 3.71 F
77 78 0.108615 CTCACATCTCCACACCGACC 60.109 60.000 0.00 0.00 0.00 4.79 F
1493 2825 0.036765 CCCTGCTGCTACGGTTTACA 60.037 55.000 0.00 0.00 0.00 2.41 F
1555 2889 0.036765 CCCTGCTGCTACGGTTTACA 60.037 55.000 0.00 0.00 0.00 2.41 F
2199 3609 0.250234 TTCTGGGGAATCAGTCGCTG 59.750 55.000 1.02 1.02 39.17 5.18 F
2818 4231 2.045926 GCTGCGTCAATCCCTGGT 60.046 61.111 0.00 0.00 0.00 4.00 F
4621 6041 0.179234 TCTCTCTCGCTCCGTGATCT 59.821 55.000 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 2806 0.036765 TGTAAACCGTAGCAGCAGGG 60.037 55.000 0.00 0.00 0.00 4.45 R
1536 2870 0.036765 TGTAAACCGTAGCAGCAGGG 60.037 55.000 0.00 0.00 0.00 4.45 R
2641 4054 1.906574 ACTCGCTTTGGGACCTCATTA 59.093 47.619 0.00 0.00 0.00 1.90 R
2818 4231 4.502105 TCTAATACTTGCAAGGCCATCA 57.498 40.909 29.18 7.29 0.00 3.07 R
3764 5180 7.160726 TGTGAATACAGAGTCATCATGTTGAA 58.839 34.615 8.04 0.00 31.24 2.69 R
4755 6175 1.374560 CGTCCCAAAACAGACACACA 58.625 50.000 0.00 0.00 33.08 3.72 R
5608 9645 1.080298 GTGTTGGCAGCCAGCATTC 60.080 57.895 31.25 17.35 45.72 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.671896 TACCTAGCTAGCCCTACACC 57.328 55.000 15.74 0.00 0.00 4.16
20 21 0.935194 ACCTAGCTAGCCCTACACCT 59.065 55.000 15.74 0.00 0.00 4.00
21 22 2.141911 ACCTAGCTAGCCCTACACCTA 58.858 52.381 15.74 0.00 0.00 3.08
22 23 2.517127 ACCTAGCTAGCCCTACACCTAA 59.483 50.000 15.74 0.00 0.00 2.69
23 24 3.052338 ACCTAGCTAGCCCTACACCTAAA 60.052 47.826 15.74 0.00 0.00 1.85
24 25 3.574826 CCTAGCTAGCCCTACACCTAAAG 59.425 52.174 15.74 0.00 0.00 1.85
25 26 3.399952 AGCTAGCCCTACACCTAAAGA 57.600 47.619 12.13 0.00 0.00 2.52
26 27 3.930035 AGCTAGCCCTACACCTAAAGAT 58.070 45.455 12.13 0.00 0.00 2.40
27 28 5.076057 AGCTAGCCCTACACCTAAAGATA 57.924 43.478 12.13 0.00 0.00 1.98
28 29 5.081032 AGCTAGCCCTACACCTAAAGATAG 58.919 45.833 12.13 0.00 0.00 2.08
29 30 4.322123 GCTAGCCCTACACCTAAAGATAGC 60.322 50.000 2.29 0.00 0.00 2.97
30 31 3.930035 AGCCCTACACCTAAAGATAGCT 58.070 45.455 0.00 0.00 0.00 3.32
31 32 5.076057 AGCCCTACACCTAAAGATAGCTA 57.924 43.478 0.00 0.00 0.00 3.32
32 33 5.656420 AGCCCTACACCTAAAGATAGCTAT 58.344 41.667 5.76 5.76 0.00 2.97
33 34 6.801953 AGCCCTACACCTAAAGATAGCTATA 58.198 40.000 6.13 0.00 0.00 1.31
34 35 6.664384 AGCCCTACACCTAAAGATAGCTATAC 59.336 42.308 6.13 0.74 0.00 1.47
35 36 6.664384 GCCCTACACCTAAAGATAGCTATACT 59.336 42.308 6.13 3.17 0.00 2.12
36 37 7.148035 GCCCTACACCTAAAGATAGCTATACTC 60.148 44.444 6.13 0.00 0.00 2.59
37 38 8.110908 CCCTACACCTAAAGATAGCTATACTCT 58.889 40.741 6.13 0.00 0.00 3.24
38 39 8.952278 CCTACACCTAAAGATAGCTATACTCTG 58.048 40.741 6.13 0.00 0.00 3.35
39 40 9.727859 CTACACCTAAAGATAGCTATACTCTGA 57.272 37.037 6.13 0.00 0.00 3.27
40 41 8.998277 ACACCTAAAGATAGCTATACTCTGAA 57.002 34.615 6.13 0.00 0.00 3.02
41 42 8.852135 ACACCTAAAGATAGCTATACTCTGAAC 58.148 37.037 6.13 0.00 0.00 3.18
42 43 8.851145 CACCTAAAGATAGCTATACTCTGAACA 58.149 37.037 6.13 0.00 0.00 3.18
43 44 9.422681 ACCTAAAGATAGCTATACTCTGAACAA 57.577 33.333 6.13 0.00 0.00 2.83
44 45 9.906660 CCTAAAGATAGCTATACTCTGAACAAG 57.093 37.037 6.13 0.00 0.00 3.16
45 46 9.906660 CTAAAGATAGCTATACTCTGAACAAGG 57.093 37.037 6.13 0.00 0.00 3.61
46 47 8.540507 AAAGATAGCTATACTCTGAACAAGGA 57.459 34.615 6.13 0.00 0.00 3.36
47 48 7.519032 AGATAGCTATACTCTGAACAAGGAC 57.481 40.000 6.13 0.00 0.00 3.85
48 49 7.294584 AGATAGCTATACTCTGAACAAGGACT 58.705 38.462 6.13 0.00 0.00 3.85
49 50 5.845391 AGCTATACTCTGAACAAGGACTC 57.155 43.478 0.00 0.00 0.00 3.36
50 51 4.336993 AGCTATACTCTGAACAAGGACTCG 59.663 45.833 0.00 0.00 0.00 4.18
51 52 3.512033 ATACTCTGAACAAGGACTCGC 57.488 47.619 0.00 0.00 0.00 5.03
52 53 1.333177 ACTCTGAACAAGGACTCGCT 58.667 50.000 0.00 0.00 0.00 4.93
53 54 1.271102 ACTCTGAACAAGGACTCGCTC 59.729 52.381 0.00 0.00 0.00 5.03
54 55 1.543802 CTCTGAACAAGGACTCGCTCT 59.456 52.381 0.00 0.00 0.00 4.09
55 56 1.542030 TCTGAACAAGGACTCGCTCTC 59.458 52.381 0.00 0.00 0.00 3.20
56 57 0.603569 TGAACAAGGACTCGCTCTCC 59.396 55.000 0.00 0.00 0.00 3.71
57 58 0.603569 GAACAAGGACTCGCTCTCCA 59.396 55.000 0.00 0.00 0.00 3.86
58 59 0.318762 AACAAGGACTCGCTCTCCAC 59.681 55.000 0.00 0.00 0.00 4.02
59 60 0.540830 ACAAGGACTCGCTCTCCACT 60.541 55.000 0.00 0.00 0.00 4.00
60 61 0.172352 CAAGGACTCGCTCTCCACTC 59.828 60.000 0.00 0.00 0.00 3.51
61 62 0.251386 AAGGACTCGCTCTCCACTCA 60.251 55.000 0.00 0.00 0.00 3.41
62 63 0.963355 AGGACTCGCTCTCCACTCAC 60.963 60.000 0.00 0.00 0.00 3.51
63 64 1.244697 GGACTCGCTCTCCACTCACA 61.245 60.000 0.00 0.00 0.00 3.58
64 65 0.814457 GACTCGCTCTCCACTCACAT 59.186 55.000 0.00 0.00 0.00 3.21
65 66 0.814457 ACTCGCTCTCCACTCACATC 59.186 55.000 0.00 0.00 0.00 3.06
66 67 1.102154 CTCGCTCTCCACTCACATCT 58.898 55.000 0.00 0.00 0.00 2.90
67 68 1.065401 CTCGCTCTCCACTCACATCTC 59.935 57.143 0.00 0.00 0.00 2.75
68 69 0.102120 CGCTCTCCACTCACATCTCC 59.898 60.000 0.00 0.00 0.00 3.71
69 70 1.189752 GCTCTCCACTCACATCTCCA 58.810 55.000 0.00 0.00 0.00 3.86
70 71 1.134848 GCTCTCCACTCACATCTCCAC 60.135 57.143 0.00 0.00 0.00 4.02
71 72 2.174360 CTCTCCACTCACATCTCCACA 58.826 52.381 0.00 0.00 0.00 4.17
72 73 1.895798 TCTCCACTCACATCTCCACAC 59.104 52.381 0.00 0.00 0.00 3.82
73 74 0.976641 TCCACTCACATCTCCACACC 59.023 55.000 0.00 0.00 0.00 4.16
74 75 0.390340 CCACTCACATCTCCACACCG 60.390 60.000 0.00 0.00 0.00 4.94
75 76 0.603065 CACTCACATCTCCACACCGA 59.397 55.000 0.00 0.00 0.00 4.69
76 77 0.603569 ACTCACATCTCCACACCGAC 59.396 55.000 0.00 0.00 0.00 4.79
77 78 0.108615 CTCACATCTCCACACCGACC 60.109 60.000 0.00 0.00 0.00 4.79
78 79 0.830023 TCACATCTCCACACCGACCA 60.830 55.000 0.00 0.00 0.00 4.02
79 80 0.390340 CACATCTCCACACCGACCAG 60.390 60.000 0.00 0.00 0.00 4.00
80 81 1.448540 CATCTCCACACCGACCAGC 60.449 63.158 0.00 0.00 0.00 4.85
110 111 8.908903 TGGTAAACTTATTGAAGCTTTCTTTCA 58.091 29.630 0.00 0.00 35.97 2.69
144 145 3.950395 ACTTCTATTCCAGCTGGATTTGC 59.050 43.478 35.42 0.00 44.98 3.68
146 147 2.170397 TCTATTCCAGCTGGATTTGCGA 59.830 45.455 35.42 20.29 44.98 5.10
163 164 1.529826 GCGAAAATGATCAGCGGACAC 60.530 52.381 0.09 0.00 0.00 3.67
226 1179 8.514594 CATCACTGAAAGCACTAAAATAGGAAA 58.485 33.333 0.00 0.00 37.60 3.13
303 1258 5.880901 ACTCCTTAACACAATGATCCAAGT 58.119 37.500 0.00 0.00 0.00 3.16
450 1409 1.161563 TCGGTTTGGGTCGAGCAAAC 61.162 55.000 22.87 22.87 37.89 2.93
460 1420 2.096860 GGTCGAGCAAACGAAAAGAGAC 60.097 50.000 10.30 0.00 43.75 3.36
464 1424 3.480505 CGAGCAAACGAAAAGAGACGATC 60.481 47.826 0.00 0.00 35.09 3.69
514 1497 7.357471 AGAATTTCATATCAAAGCCCTAAGGT 58.643 34.615 0.00 0.00 34.57 3.50
516 1499 9.131791 GAATTTCATATCAAAGCCCTAAGGTAA 57.868 33.333 0.00 0.00 34.57 2.85
534 1517 5.313712 AGGTAAGATGGGGCAAATTATACG 58.686 41.667 0.00 0.00 0.00 3.06
536 1519 6.043474 AGGTAAGATGGGGCAAATTATACGTA 59.957 38.462 0.00 0.00 0.00 3.57
537 1520 6.148315 GGTAAGATGGGGCAAATTATACGTAC 59.852 42.308 0.00 0.00 0.00 3.67
538 1521 5.562298 AGATGGGGCAAATTATACGTACT 57.438 39.130 0.00 0.00 0.00 2.73
539 1522 6.675413 AGATGGGGCAAATTATACGTACTA 57.325 37.500 0.00 0.00 0.00 1.82
540 1523 6.461640 AGATGGGGCAAATTATACGTACTAC 58.538 40.000 0.00 0.00 0.00 2.73
541 1524 5.611128 TGGGGCAAATTATACGTACTACA 57.389 39.130 0.00 0.00 0.00 2.74
542 1525 6.177310 TGGGGCAAATTATACGTACTACAT 57.823 37.500 0.00 0.00 0.00 2.29
543 1526 6.593807 TGGGGCAAATTATACGTACTACATT 58.406 36.000 0.00 0.00 0.00 2.71
556 1541 7.718272 ACGTACTACATTAAGAAGCAAACAA 57.282 32.000 0.00 0.00 0.00 2.83
562 1547 4.023193 ACATTAAGAAGCAAACAACTCCCG 60.023 41.667 0.00 0.00 0.00 5.14
656 1644 1.588404 CCTGAATCGACGAACGGAATG 59.412 52.381 0.00 0.00 42.82 2.67
706 1695 5.690409 GTCTCACGACAAGAATACTTTGTCA 59.310 40.000 15.74 0.00 39.98 3.58
805 1794 2.060980 ATGTCCTCACCCCTCTCGC 61.061 63.158 0.00 0.00 0.00 5.03
806 1795 2.680352 GTCCTCACCCCTCTCGCA 60.680 66.667 0.00 0.00 0.00 5.10
807 1796 2.680352 TCCTCACCCCTCTCGCAC 60.680 66.667 0.00 0.00 0.00 5.34
811 1800 1.662438 CTCACCCCTCTCGCACTCTC 61.662 65.000 0.00 0.00 0.00 3.20
852 1848 2.933878 TTCACACACGCACACCTCCC 62.934 60.000 0.00 0.00 0.00 4.30
853 1849 3.161450 ACACACGCACACCTCCCT 61.161 61.111 0.00 0.00 0.00 4.20
979 1982 0.678048 GCCGATGAGAAAAGCCACCT 60.678 55.000 0.00 0.00 0.00 4.00
1039 2042 1.552792 CACTCTTCCTCAGTCTTCCCC 59.447 57.143 0.00 0.00 0.00 4.81
1046 2049 1.671901 CTCAGTCTTCCCCCTCTCGC 61.672 65.000 0.00 0.00 0.00 5.03
1047 2050 2.364448 AGTCTTCCCCCTCTCGCC 60.364 66.667 0.00 0.00 0.00 5.54
1120 2129 3.565764 AAGCCAAAGATCGATCCATGA 57.434 42.857 21.66 0.00 0.00 3.07
1187 2518 1.112113 GTCGGCCACCTCAAGATCTA 58.888 55.000 2.24 0.00 0.00 1.98
1232 2563 1.251527 TGCTCCTGTTCTCGACTCCC 61.252 60.000 0.00 0.00 0.00 4.30
1239 2570 1.987855 TTCTCGACTCCCGGCCAAT 60.988 57.895 2.24 0.00 39.14 3.16
1270 2601 1.178276 CCGAATATCTCCTCCTCCGG 58.822 60.000 0.00 0.00 0.00 5.14
1370 2702 3.509967 CCCTGTCGCTTTTCCCTTTATTT 59.490 43.478 0.00 0.00 0.00 1.40
1371 2703 4.021456 CCCTGTCGCTTTTCCCTTTATTTT 60.021 41.667 0.00 0.00 0.00 1.82
1372 2704 5.184287 CCCTGTCGCTTTTCCCTTTATTTTA 59.816 40.000 0.00 0.00 0.00 1.52
1407 2739 1.683917 CACGAGGGAAGATCTGTAGGG 59.316 57.143 0.00 0.00 0.00 3.53
1412 2744 3.898741 GAGGGAAGATCTGTAGGGGTAAG 59.101 52.174 0.00 0.00 0.00 2.34
1417 2749 2.894126 AGATCTGTAGGGGTAAGCGATG 59.106 50.000 0.00 0.00 0.00 3.84
1418 2750 0.750850 TCTGTAGGGGTAAGCGATGC 59.249 55.000 0.00 0.00 0.00 3.91
1419 2751 0.753262 CTGTAGGGGTAAGCGATGCT 59.247 55.000 0.00 0.00 42.56 3.79
1420 2752 1.961394 CTGTAGGGGTAAGCGATGCTA 59.039 52.381 0.00 0.00 38.25 3.49
1421 2753 1.961394 TGTAGGGGTAAGCGATGCTAG 59.039 52.381 0.00 0.00 38.25 3.42
1422 2754 1.962100 GTAGGGGTAAGCGATGCTAGT 59.038 52.381 0.00 0.00 38.25 2.57
1423 2755 1.497161 AGGGGTAAGCGATGCTAGTT 58.503 50.000 0.00 0.00 38.25 2.24
1424 2756 1.413077 AGGGGTAAGCGATGCTAGTTC 59.587 52.381 0.00 0.00 38.25 3.01
1425 2757 1.138266 GGGGTAAGCGATGCTAGTTCA 59.862 52.381 0.00 0.00 38.25 3.18
1426 2758 2.202566 GGGTAAGCGATGCTAGTTCAC 58.797 52.381 0.00 0.00 38.25 3.18
1441 2773 7.357303 TGCTAGTTCACGGTAAAAAGAATTTC 58.643 34.615 0.00 0.00 37.28 2.17
1463 2795 5.584913 TCTAATGGATGGAGGATCTAGGTC 58.415 45.833 0.00 0.00 33.73 3.85
1465 2797 1.150135 TGGATGGAGGATCTAGGTCCC 59.850 57.143 18.95 9.96 39.17 4.46
1466 2798 1.150135 GGATGGAGGATCTAGGTCCCA 59.850 57.143 18.95 10.82 39.17 4.37
1467 2799 2.225753 GGATGGAGGATCTAGGTCCCAT 60.226 54.545 18.95 15.17 39.17 4.00
1468 2800 2.405618 TGGAGGATCTAGGTCCCATG 57.594 55.000 18.95 0.00 39.17 3.66
1469 2801 1.580658 TGGAGGATCTAGGTCCCATGT 59.419 52.381 18.95 0.00 39.17 3.21
1470 2802 2.022035 TGGAGGATCTAGGTCCCATGTT 60.022 50.000 18.95 0.00 39.17 2.71
1471 2803 2.635427 GGAGGATCTAGGTCCCATGTTC 59.365 54.545 18.95 8.95 39.17 3.18
1472 2804 3.582164 GAGGATCTAGGTCCCATGTTCT 58.418 50.000 18.95 0.00 39.17 3.01
1473 2805 3.970640 GAGGATCTAGGTCCCATGTTCTT 59.029 47.826 18.95 0.00 39.17 2.52
1474 2806 3.970640 AGGATCTAGGTCCCATGTTCTTC 59.029 47.826 18.95 0.00 39.17 2.87
1475 2807 3.071747 GGATCTAGGTCCCATGTTCTTCC 59.928 52.174 11.38 0.00 31.82 3.46
1476 2808 2.478292 TCTAGGTCCCATGTTCTTCCC 58.522 52.381 0.00 0.00 0.00 3.97
1477 2809 2.045885 TCTAGGTCCCATGTTCTTCCCT 59.954 50.000 0.00 0.00 0.00 4.20
1485 2817 2.012673 CATGTTCTTCCCTGCTGCTAC 58.987 52.381 0.00 0.00 0.00 3.58
1491 2823 0.978151 TTCCCTGCTGCTACGGTTTA 59.022 50.000 0.00 0.00 0.00 2.01
1492 2824 0.248289 TCCCTGCTGCTACGGTTTAC 59.752 55.000 0.00 0.00 0.00 2.01
1493 2825 0.036765 CCCTGCTGCTACGGTTTACA 60.037 55.000 0.00 0.00 0.00 2.41
1495 2827 1.732259 CCTGCTGCTACGGTTTACAAG 59.268 52.381 0.00 0.00 0.00 3.16
1498 2832 2.803956 TGCTGCTACGGTTTACAAGTTC 59.196 45.455 0.00 0.00 0.00 3.01
1511 2845 7.143340 GGTTTACAAGTTCTTACATGGTTTCC 58.857 38.462 0.00 0.00 0.00 3.13
1519 2853 8.934023 AGTTCTTACATGGTTTCCATTCTTAA 57.066 30.769 0.00 0.00 42.23 1.85
1520 2854 9.362151 AGTTCTTACATGGTTTCCATTCTTAAA 57.638 29.630 0.00 0.00 42.23 1.52
1540 2874 9.618890 TCTTAAATAGATTCATGTTCTTCCCTG 57.381 33.333 6.31 0.00 0.00 4.45
1541 2875 6.705863 AAATAGATTCATGTTCTTCCCTGC 57.294 37.500 6.31 0.00 0.00 4.85
1542 2876 5.643421 ATAGATTCATGTTCTTCCCTGCT 57.357 39.130 6.31 0.00 0.00 4.24
1543 2877 3.618351 AGATTCATGTTCTTCCCTGCTG 58.382 45.455 0.00 0.00 0.00 4.41
1544 2878 1.538047 TTCATGTTCTTCCCTGCTGC 58.462 50.000 0.00 0.00 0.00 5.25
1545 2879 0.694771 TCATGTTCTTCCCTGCTGCT 59.305 50.000 0.00 0.00 0.00 4.24
1546 2880 1.908619 TCATGTTCTTCCCTGCTGCTA 59.091 47.619 0.00 0.00 0.00 3.49
1547 2881 2.012673 CATGTTCTTCCCTGCTGCTAC 58.987 52.381 0.00 0.00 0.00 3.58
1548 2882 0.037326 TGTTCTTCCCTGCTGCTACG 60.037 55.000 0.00 0.00 0.00 3.51
1549 2883 0.741221 GTTCTTCCCTGCTGCTACGG 60.741 60.000 0.00 0.00 0.00 4.02
1550 2884 1.192146 TTCTTCCCTGCTGCTACGGT 61.192 55.000 0.00 0.00 0.00 4.83
1551 2885 1.192146 TCTTCCCTGCTGCTACGGTT 61.192 55.000 0.00 0.00 0.00 4.44
1552 2886 0.321653 CTTCCCTGCTGCTACGGTTT 60.322 55.000 0.00 0.00 0.00 3.27
1553 2887 0.978151 TTCCCTGCTGCTACGGTTTA 59.022 50.000 0.00 0.00 0.00 2.01
1554 2888 0.248289 TCCCTGCTGCTACGGTTTAC 59.752 55.000 0.00 0.00 0.00 2.01
1555 2889 0.036765 CCCTGCTGCTACGGTTTACA 60.037 55.000 0.00 0.00 0.00 2.41
1556 2890 1.609580 CCCTGCTGCTACGGTTTACAA 60.610 52.381 0.00 0.00 0.00 2.41
1557 2891 1.732259 CCTGCTGCTACGGTTTACAAG 59.268 52.381 0.00 0.00 0.00 3.16
1558 2892 2.413837 CTGCTGCTACGGTTTACAAGT 58.586 47.619 0.00 0.00 0.00 3.16
1559 2893 2.806244 CTGCTGCTACGGTTTACAAGTT 59.194 45.455 0.00 0.00 0.00 2.66
1560 2894 2.803956 TGCTGCTACGGTTTACAAGTTC 59.196 45.455 0.00 0.00 0.00 3.01
1561 2895 3.064931 GCTGCTACGGTTTACAAGTTCT 58.935 45.455 0.00 0.00 0.00 3.01
1562 2896 3.497262 GCTGCTACGGTTTACAAGTTCTT 59.503 43.478 0.00 0.00 0.00 2.52
1563 2897 4.687483 GCTGCTACGGTTTACAAGTTCTTA 59.313 41.667 0.00 0.00 0.00 2.10
1564 2898 5.389202 GCTGCTACGGTTTACAAGTTCTTAC 60.389 44.000 0.00 0.00 0.00 2.34
1565 2899 5.599732 TGCTACGGTTTACAAGTTCTTACA 58.400 37.500 0.00 0.00 0.00 2.41
1566 2900 6.225318 TGCTACGGTTTACAAGTTCTTACAT 58.775 36.000 0.00 0.00 0.00 2.29
1567 2901 6.146510 TGCTACGGTTTACAAGTTCTTACATG 59.853 38.462 0.00 0.00 0.00 3.21
1568 2902 5.934935 ACGGTTTACAAGTTCTTACATGG 57.065 39.130 0.00 0.00 0.00 3.66
1569 2903 5.370679 ACGGTTTACAAGTTCTTACATGGT 58.629 37.500 0.00 0.00 0.00 3.55
1570 2904 5.824097 ACGGTTTACAAGTTCTTACATGGTT 59.176 36.000 0.00 0.00 0.00 3.67
1571 2905 6.319405 ACGGTTTACAAGTTCTTACATGGTTT 59.681 34.615 0.00 0.00 0.00 3.27
1572 2906 6.854381 CGGTTTACAAGTTCTTACATGGTTTC 59.146 38.462 0.00 0.00 0.00 2.78
1573 2907 7.143340 GGTTTACAAGTTCTTACATGGTTTCC 58.857 38.462 0.00 0.00 0.00 3.13
1574 2908 7.201839 GGTTTACAAGTTCTTACATGGTTTCCA 60.202 37.037 0.00 0.00 38.19 3.53
1575 2909 8.357402 GTTTACAAGTTCTTACATGGTTTCCAT 58.643 33.333 0.00 0.00 46.37 3.41
1580 2914 8.792633 CAAGTTCTTACATGGTTTCCATTCTTA 58.207 33.333 0.00 0.00 42.23 2.10
1670 3004 4.027572 TGAGGTTATTTTTATGCAGCGC 57.972 40.909 0.00 0.00 0.00 5.92
1684 3018 2.014128 GCAGCGCTTAGTTAAATCCCA 58.986 47.619 7.50 0.00 0.00 4.37
1711 3045 1.011451 GGCGCCGCATCTAGATCTTC 61.011 60.000 12.58 0.00 0.00 2.87
1713 3047 1.975837 CGCCGCATCTAGATCTTCTC 58.024 55.000 1.03 0.00 0.00 2.87
1721 3061 6.811170 CCGCATCTAGATCTTCTCCTATTTTC 59.189 42.308 1.03 0.00 0.00 2.29
1793 3133 3.888930 GTGGGTTCTCTTCATGTTCCAAA 59.111 43.478 0.00 0.00 0.00 3.28
1872 3212 2.724977 CTCAAGTCTGAGTTACCGCA 57.275 50.000 0.00 0.00 43.64 5.69
1873 3213 3.026630 CTCAAGTCTGAGTTACCGCAA 57.973 47.619 0.00 0.00 43.64 4.85
1876 3216 3.067106 CAAGTCTGAGTTACCGCAATGT 58.933 45.455 0.00 0.00 0.00 2.71
1877 3217 2.688507 AGTCTGAGTTACCGCAATGTG 58.311 47.619 0.00 0.00 0.00 3.21
1878 3218 2.037251 AGTCTGAGTTACCGCAATGTGT 59.963 45.455 0.00 0.00 0.00 3.72
1920 3260 5.073311 TCTACTGTTGTCCTGCTTGATAC 57.927 43.478 0.00 0.00 0.00 2.24
1924 3264 3.581755 TGTTGTCCTGCTTGATACGTAC 58.418 45.455 0.00 0.00 0.00 3.67
1925 3265 3.006003 TGTTGTCCTGCTTGATACGTACA 59.994 43.478 0.00 0.00 0.00 2.90
1928 3268 4.180817 TGTCCTGCTTGATACGTACAATG 58.819 43.478 0.00 1.35 0.00 2.82
1929 3269 3.555956 GTCCTGCTTGATACGTACAATGG 59.444 47.826 0.00 7.60 0.00 3.16
1941 3342 8.822855 TGATACGTACAATGGATTTATGTTGTC 58.177 33.333 0.00 0.00 36.34 3.18
1948 3349 3.340034 TGGATTTATGTTGTCGTGTCCC 58.660 45.455 0.00 0.00 0.00 4.46
1973 3374 1.065102 TCAGTCGCTATACTTGTCGCC 59.935 52.381 0.00 0.00 0.00 5.54
2106 3515 2.039879 GGTGCCAACCTCCTCTTCTTTA 59.960 50.000 0.00 0.00 43.84 1.85
2120 3529 5.643777 CCTCTTCTTTATGTACACCAACCAG 59.356 44.000 0.00 0.00 0.00 4.00
2136 3545 4.021192 CCAACCAGTCATTTTGTTGCCTAT 60.021 41.667 0.00 0.00 37.38 2.57
2139 3548 7.322664 CAACCAGTCATTTTGTTGCCTATAAT 58.677 34.615 0.00 0.00 32.62 1.28
2168 3578 6.821031 TTTAAAGGCCGTGCTTATTTTCTA 57.179 33.333 0.00 0.00 0.00 2.10
2199 3609 0.250234 TTCTGGGGAATCAGTCGCTG 59.750 55.000 1.02 1.02 39.17 5.18
2214 3624 2.484264 GTCGCTGTTGGCTGTATCTTTT 59.516 45.455 0.00 0.00 39.13 2.27
2584 3997 5.244851 TCAGGCATCAGTAGTGGAGATTATC 59.755 44.000 0.00 0.00 0.00 1.75
2641 4054 2.106857 TGGACGGGTTATGTTTGACCTT 59.893 45.455 0.00 0.00 36.18 3.50
2818 4231 2.045926 GCTGCGTCAATCCCTGGT 60.046 61.111 0.00 0.00 0.00 4.00
3253 4669 5.489792 AGTTCTCAAGCAGGATTCACTTA 57.510 39.130 0.00 0.00 0.00 2.24
3764 5180 2.430465 GGTTCACATGCTCATCACTGT 58.570 47.619 0.00 0.00 0.00 3.55
3880 5296 2.362077 AGCAACCAACATTGTCTCAACC 59.638 45.455 0.00 0.00 31.83 3.77
4237 5653 2.501610 GAGACCGCCCATCCTGAC 59.498 66.667 0.00 0.00 0.00 3.51
4291 5707 2.509336 CGCCCACCTGACATCGTC 60.509 66.667 0.00 0.00 0.00 4.20
4471 5887 0.675083 TGTACGTCACACCATTCCGT 59.325 50.000 0.00 0.00 35.68 4.69
4621 6041 0.179234 TCTCTCTCGCTCCGTGATCT 59.821 55.000 0.00 0.00 0.00 2.75
4754 6174 6.322491 GTTGTTTGTAGTCTTTTCAGTTGCT 58.678 36.000 0.00 0.00 0.00 3.91
4755 6175 6.509418 TGTTTGTAGTCTTTTCAGTTGCTT 57.491 33.333 0.00 0.00 0.00 3.91
4865 6285 4.096984 CCTGAAGAAATTGTGCTATCACCC 59.903 45.833 0.00 0.00 42.46 4.61
4917 6337 4.427394 GCATCTAGCAGTGGTCGG 57.573 61.111 0.00 0.00 44.79 4.79
4918 6338 1.884926 GCATCTAGCAGTGGTCGGC 60.885 63.158 0.00 0.00 44.79 5.54
4919 6339 1.227380 CATCTAGCAGTGGTCGGCC 60.227 63.158 0.00 0.00 35.46 6.13
4925 6345 3.129502 CAGTGGTCGGCCTGCATG 61.130 66.667 7.97 0.00 35.27 4.06
4936 6356 1.948145 GGCCTGCATGAGAAGATTCAG 59.052 52.381 0.00 0.00 0.00 3.02
4941 6361 2.745821 TGCATGAGAAGATTCAGTGTGC 59.254 45.455 0.00 0.00 0.00 4.57
4963 6383 3.431626 CGCCTGGGACACTGTTAATGATA 60.432 47.826 0.00 0.00 0.00 2.15
4977 6400 8.511321 ACTGTTAATGATATTTTTGCTGAACGA 58.489 29.630 0.00 0.00 0.00 3.85
4981 6404 6.741992 ATGATATTTTTGCTGAACGACTGA 57.258 33.333 0.00 0.00 0.00 3.41
5012 6435 2.195922 GAATCCATGACGGCATTTTGC 58.804 47.619 0.00 0.00 44.08 3.68
5045 6468 3.554934 CTGGGTTGGTATATGTGTGCAT 58.445 45.455 0.00 0.00 39.03 3.96
5068 6491 7.201530 GCATGTAGTTTCAGGTCAAGTATGTAC 60.202 40.741 0.00 0.00 0.00 2.90
5069 6492 7.292713 TGTAGTTTCAGGTCAAGTATGTACA 57.707 36.000 0.00 0.00 0.00 2.90
5070 6493 7.728148 TGTAGTTTCAGGTCAAGTATGTACAA 58.272 34.615 0.00 0.00 0.00 2.41
5071 6494 7.870954 TGTAGTTTCAGGTCAAGTATGTACAAG 59.129 37.037 0.00 0.00 0.00 3.16
5072 6495 6.827727 AGTTTCAGGTCAAGTATGTACAAGT 58.172 36.000 0.00 0.00 0.00 3.16
5074 6497 8.088981 AGTTTCAGGTCAAGTATGTACAAGTAG 58.911 37.037 0.00 0.00 0.00 2.57
5075 6498 7.534723 TTCAGGTCAAGTATGTACAAGTAGT 57.465 36.000 0.00 0.00 0.00 2.73
5077 6500 7.375834 TCAGGTCAAGTATGTACAAGTAGTTG 58.624 38.462 14.17 14.17 39.82 3.16
5078 6501 6.090898 CAGGTCAAGTATGTACAAGTAGTTGC 59.909 42.308 15.04 11.46 37.14 4.17
5079 6502 5.061808 GGTCAAGTATGTACAAGTAGTTGCG 59.938 44.000 15.04 0.00 37.14 4.85
5082 6505 3.924686 AGTATGTACAAGTAGTTGCGTGC 59.075 43.478 10.30 0.93 37.14 5.34
5083 6506 2.519377 TGTACAAGTAGTTGCGTGCT 57.481 45.000 10.30 0.00 37.14 4.40
5085 6508 1.136336 GTACAAGTAGTTGCGTGCTGC 60.136 52.381 10.30 0.00 46.70 5.25
5096 6519 2.663478 CGTGCTGCGCCTTCGTTTA 61.663 57.895 4.18 0.00 38.14 2.01
5097 6520 1.154469 GTGCTGCGCCTTCGTTTAC 60.154 57.895 4.18 0.00 38.14 2.01
5100 6523 2.025418 CTGCGCCTTCGTTTACCGT 61.025 57.895 4.18 0.00 38.14 4.83
5101 6524 1.562575 CTGCGCCTTCGTTTACCGTT 61.563 55.000 4.18 0.00 38.14 4.44
5103 6526 0.789601 GCGCCTTCGTTTACCGTTTA 59.210 50.000 0.00 0.00 38.14 2.01
5106 6529 2.777494 GCCTTCGTTTACCGTTTATGC 58.223 47.619 0.00 0.00 37.94 3.14
5119 6559 4.330074 ACCGTTTATGCATCTTCTCTTTCG 59.670 41.667 0.19 0.00 0.00 3.46
5130 6570 5.941948 TCTTCTCTTTCGTCCCATTTTTC 57.058 39.130 0.00 0.00 0.00 2.29
5197 6637 3.392616 CTGCCAGTATTGGGATCCTACTT 59.607 47.826 12.58 0.00 44.53 2.24
5198 6638 3.785887 TGCCAGTATTGGGATCCTACTTT 59.214 43.478 12.58 0.00 45.16 2.66
5199 6639 4.229582 TGCCAGTATTGGGATCCTACTTTT 59.770 41.667 12.58 0.00 45.16 2.27
5248 6689 0.387929 TCACTCGCCCGAATATGACC 59.612 55.000 0.00 0.00 0.00 4.02
5282 6723 6.017687 GGCATTTATCTCCCAAATTTGAATGC 60.018 38.462 27.08 27.08 43.49 3.56
5305 6746 1.212616 CTCCTCGAATGCCAATCGAC 58.787 55.000 0.00 0.00 43.76 4.20
5353 6798 7.756272 TCCATGAATTTCTGTTTTTGATCGATG 59.244 33.333 0.54 0.00 0.00 3.84
5358 6803 8.728088 AATTTCTGTTTTTGATCGATGTACAC 57.272 30.769 0.54 0.00 0.00 2.90
5368 6813 4.926832 TGATCGATGTACACACGTTCAAAT 59.073 37.500 23.31 12.20 34.45 2.32
5383 6828 7.876068 ACACGTTCAAATATCAACTTCTTAGGA 59.124 33.333 0.00 0.00 0.00 2.94
5436 6881 3.944015 GTCTTTGCATCTCAAGCACCTAT 59.056 43.478 0.00 0.00 42.54 2.57
5448 6893 6.385759 TCTCAAGCACCTATACCAATTTAGGA 59.614 38.462 7.75 0.00 38.68 2.94
5520 6968 2.064014 GGTCCACGTACTTGCTTACAC 58.936 52.381 0.00 0.00 0.00 2.90
5569 7018 4.219725 TGCCCCTAATGCTTTTCAAAGTAC 59.780 41.667 1.37 0.00 38.28 2.73
5682 9737 9.234384 ACTCAGTTAATATATCACGTTTCTTCG 57.766 33.333 0.00 0.00 0.00 3.79
5699 9758 2.677979 CGGACGTCAGACAGCGAGA 61.678 63.158 18.91 0.00 0.00 4.04
5709 9768 3.002348 TCAGACAGCGAGACATACATACG 59.998 47.826 0.00 0.00 0.00 3.06
5750 9809 7.837863 TCTTAAGATAATCGTCCATCCATACC 58.162 38.462 0.00 0.00 0.00 2.73
5769 9828 1.282875 GCCAGCAAAACCAGACGAC 59.717 57.895 0.00 0.00 0.00 4.34
5783 9842 3.941483 CCAGACGACCAAAGATAAAGCAT 59.059 43.478 0.00 0.00 0.00 3.79
5865 9924 4.869861 TCAAAAAGAAGCAAGCAACCTTTC 59.130 37.500 0.00 0.00 0.00 2.62
5871 9930 3.183793 AGCAAGCAACCTTTCCAAAAG 57.816 42.857 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.141911 AGGTGTAGGGCTAGCTAGGTA 58.858 52.381 22.10 0.99 0.00 3.08
1 2 0.935194 AGGTGTAGGGCTAGCTAGGT 59.065 55.000 22.10 0.00 0.00 3.08
2 3 2.973983 TAGGTGTAGGGCTAGCTAGG 57.026 55.000 22.10 4.48 0.00 3.02
4 5 4.531357 TCTTTAGGTGTAGGGCTAGCTA 57.469 45.455 15.72 0.00 0.00 3.32
5 6 3.399952 TCTTTAGGTGTAGGGCTAGCT 57.600 47.619 15.72 0.00 0.00 3.32
6 7 4.322123 GCTATCTTTAGGTGTAGGGCTAGC 60.322 50.000 6.04 6.04 0.00 3.42
7 8 5.081032 AGCTATCTTTAGGTGTAGGGCTAG 58.919 45.833 0.00 0.00 34.90 3.42
8 9 5.076057 AGCTATCTTTAGGTGTAGGGCTA 57.924 43.478 0.00 0.00 34.90 3.93
9 10 3.930035 AGCTATCTTTAGGTGTAGGGCT 58.070 45.455 0.00 0.00 34.90 5.19
10 11 6.664384 AGTATAGCTATCTTTAGGTGTAGGGC 59.336 42.308 10.16 0.00 36.82 5.19
11 12 8.110908 AGAGTATAGCTATCTTTAGGTGTAGGG 58.889 40.741 10.16 0.00 36.82 3.53
12 13 8.952278 CAGAGTATAGCTATCTTTAGGTGTAGG 58.048 40.741 10.16 0.00 36.82 3.18
13 14 9.727859 TCAGAGTATAGCTATCTTTAGGTGTAG 57.272 37.037 10.16 0.00 36.82 2.74
15 16 8.852135 GTTCAGAGTATAGCTATCTTTAGGTGT 58.148 37.037 10.16 0.00 36.82 4.16
16 17 8.851145 TGTTCAGAGTATAGCTATCTTTAGGTG 58.149 37.037 10.16 0.76 36.82 4.00
17 18 8.998277 TGTTCAGAGTATAGCTATCTTTAGGT 57.002 34.615 10.16 0.00 39.44 3.08
18 19 9.906660 CTTGTTCAGAGTATAGCTATCTTTAGG 57.093 37.037 10.16 0.00 0.00 2.69
19 20 9.906660 CCTTGTTCAGAGTATAGCTATCTTTAG 57.093 37.037 10.16 0.00 0.00 1.85
20 21 9.642343 TCCTTGTTCAGAGTATAGCTATCTTTA 57.358 33.333 10.16 0.00 0.00 1.85
21 22 8.417884 GTCCTTGTTCAGAGTATAGCTATCTTT 58.582 37.037 10.16 0.33 0.00 2.52
22 23 7.782644 AGTCCTTGTTCAGAGTATAGCTATCTT 59.217 37.037 10.16 0.00 0.00 2.40
23 24 7.294584 AGTCCTTGTTCAGAGTATAGCTATCT 58.705 38.462 10.16 7.42 0.00 1.98
24 25 7.519032 AGTCCTTGTTCAGAGTATAGCTATC 57.481 40.000 10.16 2.36 0.00 2.08
25 26 6.205853 CGAGTCCTTGTTCAGAGTATAGCTAT 59.794 42.308 11.77 11.77 0.00 2.97
26 27 5.527951 CGAGTCCTTGTTCAGAGTATAGCTA 59.472 44.000 0.00 0.00 0.00 3.32
27 28 4.336993 CGAGTCCTTGTTCAGAGTATAGCT 59.663 45.833 0.00 0.00 0.00 3.32
28 29 4.602995 CGAGTCCTTGTTCAGAGTATAGC 58.397 47.826 0.00 0.00 0.00 2.97
29 30 4.336993 AGCGAGTCCTTGTTCAGAGTATAG 59.663 45.833 0.00 0.00 0.00 1.31
30 31 4.270834 AGCGAGTCCTTGTTCAGAGTATA 58.729 43.478 0.00 0.00 0.00 1.47
31 32 3.093057 AGCGAGTCCTTGTTCAGAGTAT 58.907 45.455 0.00 0.00 0.00 2.12
32 33 2.488545 GAGCGAGTCCTTGTTCAGAGTA 59.511 50.000 0.00 0.00 0.00 2.59
33 34 1.271102 GAGCGAGTCCTTGTTCAGAGT 59.729 52.381 0.00 0.00 0.00 3.24
34 35 1.543802 AGAGCGAGTCCTTGTTCAGAG 59.456 52.381 1.87 0.00 0.00 3.35
35 36 1.542030 GAGAGCGAGTCCTTGTTCAGA 59.458 52.381 1.87 0.00 0.00 3.27
36 37 1.403514 GGAGAGCGAGTCCTTGTTCAG 60.404 57.143 1.87 0.00 0.00 3.02
37 38 0.603569 GGAGAGCGAGTCCTTGTTCA 59.396 55.000 1.87 0.00 0.00 3.18
38 39 0.603569 TGGAGAGCGAGTCCTTGTTC 59.396 55.000 4.03 0.00 34.86 3.18
39 40 0.318762 GTGGAGAGCGAGTCCTTGTT 59.681 55.000 4.03 0.00 34.86 2.83
40 41 0.540830 AGTGGAGAGCGAGTCCTTGT 60.541 55.000 4.03 0.00 34.86 3.16
41 42 0.172352 GAGTGGAGAGCGAGTCCTTG 59.828 60.000 4.03 0.00 34.86 3.61
42 43 0.251386 TGAGTGGAGAGCGAGTCCTT 60.251 55.000 4.03 0.00 34.86 3.36
43 44 0.963355 GTGAGTGGAGAGCGAGTCCT 60.963 60.000 4.03 0.00 34.86 3.85
44 45 1.244697 TGTGAGTGGAGAGCGAGTCC 61.245 60.000 0.00 0.00 34.31 3.85
45 46 0.814457 ATGTGAGTGGAGAGCGAGTC 59.186 55.000 0.00 0.00 0.00 3.36
46 47 0.814457 GATGTGAGTGGAGAGCGAGT 59.186 55.000 0.00 0.00 0.00 4.18
47 48 1.065401 GAGATGTGAGTGGAGAGCGAG 59.935 57.143 0.00 0.00 0.00 5.03
48 49 1.098869 GAGATGTGAGTGGAGAGCGA 58.901 55.000 0.00 0.00 0.00 4.93
49 50 0.102120 GGAGATGTGAGTGGAGAGCG 59.898 60.000 0.00 0.00 0.00 5.03
50 51 1.134848 GTGGAGATGTGAGTGGAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
51 52 2.094286 GTGTGGAGATGTGAGTGGAGAG 60.094 54.545 0.00 0.00 0.00 3.20
52 53 1.895798 GTGTGGAGATGTGAGTGGAGA 59.104 52.381 0.00 0.00 0.00 3.71
53 54 1.066573 GGTGTGGAGATGTGAGTGGAG 60.067 57.143 0.00 0.00 0.00 3.86
54 55 0.976641 GGTGTGGAGATGTGAGTGGA 59.023 55.000 0.00 0.00 0.00 4.02
55 56 0.390340 CGGTGTGGAGATGTGAGTGG 60.390 60.000 0.00 0.00 0.00 4.00
56 57 0.603065 TCGGTGTGGAGATGTGAGTG 59.397 55.000 0.00 0.00 0.00 3.51
57 58 0.603569 GTCGGTGTGGAGATGTGAGT 59.396 55.000 0.00 0.00 0.00 3.41
58 59 0.108615 GGTCGGTGTGGAGATGTGAG 60.109 60.000 0.00 0.00 0.00 3.51
59 60 0.830023 TGGTCGGTGTGGAGATGTGA 60.830 55.000 0.00 0.00 0.00 3.58
60 61 0.390340 CTGGTCGGTGTGGAGATGTG 60.390 60.000 0.00 0.00 0.00 3.21
61 62 1.975327 CTGGTCGGTGTGGAGATGT 59.025 57.895 0.00 0.00 0.00 3.06
62 63 1.448540 GCTGGTCGGTGTGGAGATG 60.449 63.158 0.00 0.00 0.00 2.90
63 64 2.982130 GCTGGTCGGTGTGGAGAT 59.018 61.111 0.00 0.00 0.00 2.75
64 65 3.680786 CGCTGGTCGGTGTGGAGA 61.681 66.667 0.00 0.00 33.78 3.71
65 66 1.945354 ATACGCTGGTCGGTGTGGAG 61.945 60.000 6.28 0.00 43.86 3.86
66 67 1.980232 ATACGCTGGTCGGTGTGGA 60.980 57.895 6.28 0.00 43.86 4.02
67 68 1.809619 CATACGCTGGTCGGTGTGG 60.810 63.158 6.28 0.00 43.86 4.17
68 69 1.809619 CCATACGCTGGTCGGTGTG 60.810 63.158 6.28 0.00 43.86 3.82
69 70 2.577059 CCATACGCTGGTCGGTGT 59.423 61.111 1.49 1.49 43.86 4.16
75 76 9.010431 GCTTCAATAAGTTTACCATACGCTGGT 62.010 40.741 14.08 14.08 46.40 4.00
76 77 6.729450 GCTTCAATAAGTTTACCATACGCTGG 60.729 42.308 3.17 3.17 41.87 4.85
77 78 6.037172 AGCTTCAATAAGTTTACCATACGCTG 59.963 38.462 0.00 0.00 34.99 5.18
78 79 6.113411 AGCTTCAATAAGTTTACCATACGCT 58.887 36.000 0.00 0.00 34.99 5.07
79 80 6.359480 AGCTTCAATAAGTTTACCATACGC 57.641 37.500 0.00 0.00 34.99 4.42
80 81 8.665685 AGAAAGCTTCAATAAGTTTACCATACG 58.334 33.333 0.00 0.00 35.36 3.06
144 145 1.267038 CGTGTCCGCTGATCATTTTCG 60.267 52.381 0.00 0.00 0.00 3.46
163 164 0.388391 ATGCAATTTGGGAACACGCG 60.388 50.000 3.53 3.53 42.67 6.01
232 1185 5.417580 GCTAGATTGGTGGTTTGTAATTCCA 59.582 40.000 0.00 0.00 0.00 3.53
303 1258 6.005066 TGCCATGAGGAATGAAATTAGAGA 57.995 37.500 0.00 0.00 36.07 3.10
514 1497 7.069877 AGTACGTATAATTTGCCCCATCTTA 57.930 36.000 0.00 0.00 0.00 2.10
516 1499 5.562298 AGTACGTATAATTTGCCCCATCT 57.438 39.130 0.00 0.00 0.00 2.90
534 1517 8.228464 GGAGTTGTTTGCTTCTTAATGTAGTAC 58.772 37.037 0.00 0.00 0.00 2.73
536 1519 6.206829 GGGAGTTGTTTGCTTCTTAATGTAGT 59.793 38.462 0.00 0.00 0.00 2.73
537 1520 6.612306 GGGAGTTGTTTGCTTCTTAATGTAG 58.388 40.000 0.00 0.00 0.00 2.74
538 1521 5.180492 CGGGAGTTGTTTGCTTCTTAATGTA 59.820 40.000 0.00 0.00 0.00 2.29
539 1522 4.023193 CGGGAGTTGTTTGCTTCTTAATGT 60.023 41.667 0.00 0.00 0.00 2.71
540 1523 4.023193 ACGGGAGTTGTTTGCTTCTTAATG 60.023 41.667 0.00 0.00 43.33 1.90
541 1524 4.142038 ACGGGAGTTGTTTGCTTCTTAAT 58.858 39.130 0.00 0.00 43.33 1.40
542 1525 3.547746 ACGGGAGTTGTTTGCTTCTTAA 58.452 40.909 0.00 0.00 43.33 1.85
543 1526 3.202829 ACGGGAGTTGTTTGCTTCTTA 57.797 42.857 0.00 0.00 43.33 2.10
607 1592 7.763985 GGATTTGGTTTTCTAGAGAGAGAAGAG 59.236 40.741 0.00 0.00 36.80 2.85
621 1608 4.142381 CGATTCAGGGAGGATTTGGTTTTC 60.142 45.833 0.00 0.00 0.00 2.29
706 1695 1.078709 CTTTGTGCGATGATGACGGT 58.921 50.000 0.00 0.00 0.00 4.83
805 1794 2.279120 GGATCAGCGGCGAGAGTG 60.279 66.667 12.98 1.32 0.00 3.51
806 1795 2.755876 TGGATCAGCGGCGAGAGT 60.756 61.111 12.98 0.00 0.00 3.24
807 1796 2.009424 TTCTGGATCAGCGGCGAGAG 62.009 60.000 12.98 0.00 0.00 3.20
811 1800 0.734889 ATTTTTCTGGATCAGCGGCG 59.265 50.000 0.51 0.51 0.00 6.46
1047 2050 1.152226 AGGGATAAGCGAGAGGGGG 60.152 63.158 0.00 0.00 0.00 5.40
1146 2155 2.478890 CGGATCTACACGCCGGAGT 61.479 63.158 5.05 4.71 41.29 3.85
1232 2563 0.942962 GAATCAGCAGAGATTGGCCG 59.057 55.000 0.00 0.00 38.30 6.13
1239 2570 4.219507 GGAGATATTCGGAATCAGCAGAGA 59.780 45.833 6.49 0.00 0.00 3.10
1270 2601 1.471153 GGATCTCGGAAAGGACGGAAC 60.471 57.143 0.00 0.00 0.00 3.62
1340 2672 0.603975 AAAGCGACAGGGAAGAGCAC 60.604 55.000 0.00 0.00 0.00 4.40
1343 2675 1.443802 GGAAAAGCGACAGGGAAGAG 58.556 55.000 0.00 0.00 0.00 2.85
1370 2702 4.545610 CTCGTGGCAAGCAAGAAAAATAA 58.454 39.130 0.00 0.00 0.00 1.40
1371 2703 3.057596 CCTCGTGGCAAGCAAGAAAAATA 60.058 43.478 0.00 0.00 0.00 1.40
1372 2704 2.288395 CCTCGTGGCAAGCAAGAAAAAT 60.288 45.455 0.00 0.00 0.00 1.82
1407 2739 1.852895 CGTGAACTAGCATCGCTTACC 59.147 52.381 0.00 0.00 40.44 2.85
1412 2744 1.917273 TTACCGTGAACTAGCATCGC 58.083 50.000 0.00 0.00 0.00 4.58
1417 2749 7.582352 AGAAATTCTTTTTACCGTGAACTAGC 58.418 34.615 0.00 0.00 0.00 3.42
1420 2752 9.893305 CATTAGAAATTCTTTTTACCGTGAACT 57.107 29.630 0.00 0.00 0.00 3.01
1421 2753 9.124807 CCATTAGAAATTCTTTTTACCGTGAAC 57.875 33.333 0.00 0.00 0.00 3.18
1422 2754 9.069082 TCCATTAGAAATTCTTTTTACCGTGAA 57.931 29.630 0.00 0.00 0.00 3.18
1423 2755 8.624367 TCCATTAGAAATTCTTTTTACCGTGA 57.376 30.769 0.00 0.00 0.00 4.35
1424 2756 9.289303 CATCCATTAGAAATTCTTTTTACCGTG 57.711 33.333 0.00 0.00 0.00 4.94
1425 2757 8.466798 CCATCCATTAGAAATTCTTTTTACCGT 58.533 33.333 0.00 0.00 0.00 4.83
1426 2758 8.682710 TCCATCCATTAGAAATTCTTTTTACCG 58.317 33.333 0.00 0.00 0.00 4.02
1441 2773 4.714308 GGACCTAGATCCTCCATCCATTAG 59.286 50.000 0.00 0.00 35.68 1.73
1463 2795 1.318158 GCAGCAGGGAAGAACATGGG 61.318 60.000 0.00 0.00 0.00 4.00
1465 2797 2.012673 GTAGCAGCAGGGAAGAACATG 58.987 52.381 0.00 0.00 0.00 3.21
1466 2798 1.406069 CGTAGCAGCAGGGAAGAACAT 60.406 52.381 0.00 0.00 0.00 2.71
1467 2799 0.037326 CGTAGCAGCAGGGAAGAACA 60.037 55.000 0.00 0.00 0.00 3.18
1468 2800 0.741221 CCGTAGCAGCAGGGAAGAAC 60.741 60.000 0.00 0.00 0.00 3.01
1469 2801 1.192146 ACCGTAGCAGCAGGGAAGAA 61.192 55.000 9.65 0.00 0.00 2.52
1470 2802 1.192146 AACCGTAGCAGCAGGGAAGA 61.192 55.000 9.65 0.00 0.00 2.87
1471 2803 0.321653 AAACCGTAGCAGCAGGGAAG 60.322 55.000 9.65 0.00 0.00 3.46
1472 2804 0.978151 TAAACCGTAGCAGCAGGGAA 59.022 50.000 9.65 0.00 0.00 3.97
1473 2805 0.248289 GTAAACCGTAGCAGCAGGGA 59.752 55.000 9.65 0.00 0.00 4.20
1474 2806 0.036765 TGTAAACCGTAGCAGCAGGG 60.037 55.000 0.00 0.00 0.00 4.45
1475 2807 1.732259 CTTGTAAACCGTAGCAGCAGG 59.268 52.381 0.00 0.00 0.00 4.85
1476 2808 2.413837 ACTTGTAAACCGTAGCAGCAG 58.586 47.619 0.00 0.00 0.00 4.24
1477 2809 2.536761 ACTTGTAAACCGTAGCAGCA 57.463 45.000 0.00 0.00 0.00 4.41
1485 2817 5.934935 ACCATGTAAGAACTTGTAAACCG 57.065 39.130 0.00 0.00 0.00 4.44
1491 2823 6.777580 AGAATGGAAACCATGTAAGAACTTGT 59.222 34.615 3.97 0.00 44.40 3.16
1492 2824 7.219484 AGAATGGAAACCATGTAAGAACTTG 57.781 36.000 3.97 0.00 44.40 3.16
1493 2825 7.839680 AAGAATGGAAACCATGTAAGAACTT 57.160 32.000 3.97 0.00 44.40 2.66
1519 2853 5.826737 CAGCAGGGAAGAACATGAATCTATT 59.173 40.000 0.00 0.00 0.00 1.73
1520 2854 5.374921 CAGCAGGGAAGAACATGAATCTAT 58.625 41.667 0.00 0.00 0.00 1.98
1521 2855 4.774124 CAGCAGGGAAGAACATGAATCTA 58.226 43.478 0.00 0.00 0.00 1.98
1522 2856 3.618351 CAGCAGGGAAGAACATGAATCT 58.382 45.455 0.00 0.00 0.00 2.40
1523 2857 2.098770 GCAGCAGGGAAGAACATGAATC 59.901 50.000 0.00 0.00 0.00 2.52
1524 2858 2.097825 GCAGCAGGGAAGAACATGAAT 58.902 47.619 0.00 0.00 0.00 2.57
1525 2859 1.074405 AGCAGCAGGGAAGAACATGAA 59.926 47.619 0.00 0.00 0.00 2.57
1526 2860 0.694771 AGCAGCAGGGAAGAACATGA 59.305 50.000 0.00 0.00 0.00 3.07
1527 2861 2.012673 GTAGCAGCAGGGAAGAACATG 58.987 52.381 0.00 0.00 0.00 3.21
1528 2862 1.406069 CGTAGCAGCAGGGAAGAACAT 60.406 52.381 0.00 0.00 0.00 2.71
1529 2863 0.037326 CGTAGCAGCAGGGAAGAACA 60.037 55.000 0.00 0.00 0.00 3.18
1530 2864 0.741221 CCGTAGCAGCAGGGAAGAAC 60.741 60.000 0.00 0.00 0.00 3.01
1531 2865 1.192146 ACCGTAGCAGCAGGGAAGAA 61.192 55.000 9.65 0.00 0.00 2.52
1532 2866 1.192146 AACCGTAGCAGCAGGGAAGA 61.192 55.000 9.65 0.00 0.00 2.87
1533 2867 0.321653 AAACCGTAGCAGCAGGGAAG 60.322 55.000 9.65 0.00 0.00 3.46
1534 2868 0.978151 TAAACCGTAGCAGCAGGGAA 59.022 50.000 9.65 0.00 0.00 3.97
1535 2869 0.248289 GTAAACCGTAGCAGCAGGGA 59.752 55.000 9.65 0.00 0.00 4.20
1536 2870 0.036765 TGTAAACCGTAGCAGCAGGG 60.037 55.000 0.00 0.00 0.00 4.45
1537 2871 1.732259 CTTGTAAACCGTAGCAGCAGG 59.268 52.381 0.00 0.00 0.00 4.85
1538 2872 2.413837 ACTTGTAAACCGTAGCAGCAG 58.586 47.619 0.00 0.00 0.00 4.24
1539 2873 2.536761 ACTTGTAAACCGTAGCAGCA 57.463 45.000 0.00 0.00 0.00 4.41
1540 2874 3.064931 AGAACTTGTAAACCGTAGCAGC 58.935 45.455 0.00 0.00 0.00 5.25
1541 2875 5.693104 TGTAAGAACTTGTAAACCGTAGCAG 59.307 40.000 0.00 0.00 0.00 4.24
1542 2876 5.599732 TGTAAGAACTTGTAAACCGTAGCA 58.400 37.500 0.00 0.00 0.00 3.49
1543 2877 6.401796 CCATGTAAGAACTTGTAAACCGTAGC 60.402 42.308 0.00 0.00 0.00 3.58
1544 2878 6.647895 ACCATGTAAGAACTTGTAAACCGTAG 59.352 38.462 0.00 0.00 0.00 3.51
1545 2879 6.523840 ACCATGTAAGAACTTGTAAACCGTA 58.476 36.000 0.00 0.00 0.00 4.02
1546 2880 5.370679 ACCATGTAAGAACTTGTAAACCGT 58.629 37.500 0.00 0.00 0.00 4.83
1547 2881 5.934935 ACCATGTAAGAACTTGTAAACCG 57.065 39.130 0.00 0.00 0.00 4.44
1548 2882 7.143340 GGAAACCATGTAAGAACTTGTAAACC 58.857 38.462 0.00 0.00 0.00 3.27
1549 2883 7.708998 TGGAAACCATGTAAGAACTTGTAAAC 58.291 34.615 0.00 0.00 0.00 2.01
1550 2884 7.883391 TGGAAACCATGTAAGAACTTGTAAA 57.117 32.000 0.00 0.00 0.00 2.01
1551 2885 8.472007 AATGGAAACCATGTAAGAACTTGTAA 57.528 30.769 3.97 0.00 44.40 2.41
1552 2886 7.942341 AGAATGGAAACCATGTAAGAACTTGTA 59.058 33.333 3.97 0.00 44.40 2.41
1553 2887 6.777580 AGAATGGAAACCATGTAAGAACTTGT 59.222 34.615 3.97 0.00 44.40 3.16
1554 2888 7.219484 AGAATGGAAACCATGTAAGAACTTG 57.781 36.000 3.97 0.00 44.40 3.16
1555 2889 7.839680 AAGAATGGAAACCATGTAAGAACTT 57.160 32.000 3.97 0.00 44.40 2.66
1605 2939 0.376152 GGAATGTCTGTGCGCATCAG 59.624 55.000 24.83 24.83 0.00 2.90
1664 2998 2.014128 TGGGATTTAACTAAGCGCTGC 58.986 47.619 12.58 0.00 36.20 5.25
1670 3004 2.681344 GGGTGCGTGGGATTTAACTAAG 59.319 50.000 0.00 0.00 0.00 2.18
1697 3031 6.811170 GGAAAATAGGAGAAGATCTAGATGCG 59.189 42.308 10.74 0.00 0.00 4.73
1698 3032 7.906327 AGGAAAATAGGAGAAGATCTAGATGC 58.094 38.462 10.74 2.07 0.00 3.91
1728 3068 9.280174 CCAAGGAGAACTAAAACAGTACATTTA 57.720 33.333 0.00 0.00 36.04 1.40
1730 3070 7.444487 GTCCAAGGAGAACTAAAACAGTACATT 59.556 37.037 0.00 0.00 36.04 2.71
1734 3074 6.463897 CCAGTCCAAGGAGAACTAAAACAGTA 60.464 42.308 0.00 0.00 36.04 2.74
1735 3075 5.368989 CAGTCCAAGGAGAACTAAAACAGT 58.631 41.667 0.00 0.00 40.05 3.55
1749 3089 3.344515 GGCTTTAACTACCAGTCCAAGG 58.655 50.000 0.00 0.00 0.00 3.61
1751 3091 2.369532 ACGGCTTTAACTACCAGTCCAA 59.630 45.455 0.00 0.00 0.00 3.53
1864 3204 4.510340 CCCTATTCTACACATTGCGGTAAC 59.490 45.833 0.00 0.00 0.00 2.50
1870 3210 3.748568 GCTAGCCCTATTCTACACATTGC 59.251 47.826 2.29 0.00 0.00 3.56
1871 3211 4.960938 TGCTAGCCCTATTCTACACATTG 58.039 43.478 13.29 0.00 0.00 2.82
1872 3212 5.832539 ATGCTAGCCCTATTCTACACATT 57.167 39.130 13.29 0.00 0.00 2.71
1873 3213 6.498651 AGTTATGCTAGCCCTATTCTACACAT 59.501 38.462 13.29 0.00 0.00 3.21
1876 3216 6.315714 AGAGTTATGCTAGCCCTATTCTACA 58.684 40.000 13.29 0.00 0.00 2.74
1877 3217 6.844097 AGAGTTATGCTAGCCCTATTCTAC 57.156 41.667 13.29 0.00 0.00 2.59
1878 3218 7.612244 CAGTAGAGTTATGCTAGCCCTATTCTA 59.388 40.741 13.29 11.10 0.00 2.10
1920 3260 5.957220 CACGACAACATAAATCCATTGTACG 59.043 40.000 0.00 0.00 35.47 3.67
1924 3264 5.331902 GGACACGACAACATAAATCCATTG 58.668 41.667 0.00 0.00 0.00 2.82
1925 3265 4.398044 GGGACACGACAACATAAATCCATT 59.602 41.667 0.00 0.00 0.00 3.16
1928 3268 2.681344 GGGGACACGACAACATAAATCC 59.319 50.000 0.00 0.00 0.00 3.01
1929 3269 3.340034 TGGGGACACGACAACATAAATC 58.660 45.455 0.00 0.00 33.40 2.17
1941 3342 1.372997 CGACTGAACTGGGGACACG 60.373 63.158 0.00 0.00 35.60 4.49
1948 3349 4.106197 GACAAGTATAGCGACTGAACTGG 58.894 47.826 0.00 0.00 0.00 4.00
2065 3474 4.060205 ACCTTTGCAATCAACAATTCAGC 58.940 39.130 0.00 0.00 30.75 4.26
2106 3515 4.892934 ACAAAATGACTGGTTGGTGTACAT 59.107 37.500 0.00 0.00 0.00 2.29
2120 3529 9.816354 AATGGTTATTATAGGCAACAAAATGAC 57.184 29.630 0.00 0.00 41.41 3.06
2136 3545 4.951094 AGCACGGCCTTTAAATGGTTATTA 59.049 37.500 0.00 0.00 0.00 0.98
2139 3548 2.797786 AGCACGGCCTTTAAATGGTTA 58.202 42.857 0.00 0.00 0.00 2.85
2168 3578 3.386932 TCCCCAGAATAGCTGCAAAAT 57.613 42.857 1.02 0.00 43.50 1.82
2214 3624 6.935240 TCTACTCAGGATCAGAAAAGGAAA 57.065 37.500 0.00 0.00 0.00 3.13
2224 3634 6.542821 ACCAAACAATTTCTACTCAGGATCA 58.457 36.000 0.00 0.00 0.00 2.92
2641 4054 1.906574 ACTCGCTTTGGGACCTCATTA 59.093 47.619 0.00 0.00 0.00 1.90
2818 4231 4.502105 TCTAATACTTGCAAGGCCATCA 57.498 40.909 29.18 7.29 0.00 3.07
3253 4669 7.890127 TGATATCCACCTTCAAGACAAATTCTT 59.110 33.333 0.00 0.00 46.29 2.52
3764 5180 7.160726 TGTGAATACAGAGTCATCATGTTGAA 58.839 34.615 8.04 0.00 31.24 2.69
4237 5653 3.742882 TGTCAAACTCTTCATCAAGCTCG 59.257 43.478 0.00 0.00 0.00 5.03
4471 5887 1.679139 CTGCAAGGAAGACCACAACA 58.321 50.000 0.00 0.00 38.94 3.33
4621 6041 2.258013 CGAAACAAGGAAGGCGCCA 61.258 57.895 31.54 0.00 0.00 5.69
4754 6174 1.740585 CGTCCCAAAACAGACACACAA 59.259 47.619 0.00 0.00 33.08 3.33
4755 6175 1.374560 CGTCCCAAAACAGACACACA 58.625 50.000 0.00 0.00 33.08 3.72
4908 6328 3.129502 CATGCAGGCCGACCACTG 61.130 66.667 0.00 0.00 39.06 3.66
4910 6330 2.803155 TTCTCATGCAGGCCGACCAC 62.803 60.000 0.00 0.00 39.06 4.16
4915 6335 0.942962 GAATCTTCTCATGCAGGCCG 59.057 55.000 0.00 0.00 0.00 6.13
4916 6336 1.948145 CTGAATCTTCTCATGCAGGCC 59.052 52.381 0.00 0.00 0.00 5.19
4917 6337 2.355132 CACTGAATCTTCTCATGCAGGC 59.645 50.000 0.00 0.00 0.00 4.85
4918 6338 3.374367 CACACTGAATCTTCTCATGCAGG 59.626 47.826 0.00 0.00 0.00 4.85
4919 6339 3.181509 GCACACTGAATCTTCTCATGCAG 60.182 47.826 0.00 0.00 0.00 4.41
4925 6345 0.723981 GGCGCACACTGAATCTTCTC 59.276 55.000 10.83 0.00 0.00 2.87
4936 6356 4.626081 AGTGTCCCAGGCGCACAC 62.626 66.667 17.47 17.47 40.70 3.82
4941 6361 1.086696 CATTAACAGTGTCCCAGGCG 58.913 55.000 0.00 0.00 0.00 5.52
4963 6383 3.632189 GCTTCAGTCGTTCAGCAAAAAT 58.368 40.909 0.00 0.00 32.17 1.82
4977 6400 2.224281 TGGATTCAGTTCACGCTTCAGT 60.224 45.455 0.00 0.00 0.00 3.41
4981 6404 2.744202 GTCATGGATTCAGTTCACGCTT 59.256 45.455 0.00 0.00 0.00 4.68
5012 6435 1.597742 CAACCCAGGTTCAGTGACAG 58.402 55.000 0.00 0.00 36.00 3.51
5045 6468 7.292713 TGTACATACTTGACCTGAAACTACA 57.707 36.000 0.00 0.00 0.00 2.74
5068 6491 1.154599 CGCAGCACGCAACTACTTG 60.155 57.895 0.00 0.00 42.60 3.16
5069 6492 3.244105 CGCAGCACGCAACTACTT 58.756 55.556 0.00 0.00 42.60 2.24
5092 6515 6.663944 AGAGAAGATGCATAAACGGTAAAC 57.336 37.500 0.00 0.00 0.00 2.01
5093 6516 7.412563 CGAAAGAGAAGATGCATAAACGGTAAA 60.413 37.037 0.00 0.00 0.00 2.01
5094 6517 6.035650 CGAAAGAGAAGATGCATAAACGGTAA 59.964 38.462 0.00 0.00 0.00 2.85
5096 6519 4.330074 CGAAAGAGAAGATGCATAAACGGT 59.670 41.667 0.00 0.00 0.00 4.83
5097 6520 4.330074 ACGAAAGAGAAGATGCATAAACGG 59.670 41.667 0.00 0.00 0.00 4.44
5100 6523 4.876107 GGGACGAAAGAGAAGATGCATAAA 59.124 41.667 0.00 0.00 0.00 1.40
5101 6524 4.081142 TGGGACGAAAGAGAAGATGCATAA 60.081 41.667 0.00 0.00 0.00 1.90
5103 6526 2.237143 TGGGACGAAAGAGAAGATGCAT 59.763 45.455 0.00 0.00 0.00 3.96
5106 6529 5.886960 AAAATGGGACGAAAGAGAAGATG 57.113 39.130 0.00 0.00 0.00 2.90
5119 6559 5.595952 AGCATTCCTATGAGAAAAATGGGAC 59.404 40.000 0.00 0.00 34.71 4.46
5130 6570 6.127786 TGACGATAGATCAGCATTCCTATGAG 60.128 42.308 0.00 0.00 41.38 2.90
5197 6637 4.159321 TCCATCTGTGAAGTGCAACAAAAA 59.841 37.500 0.00 0.00 41.43 1.94
5198 6638 3.698539 TCCATCTGTGAAGTGCAACAAAA 59.301 39.130 0.00 0.00 41.43 2.44
5199 6639 3.286353 TCCATCTGTGAAGTGCAACAAA 58.714 40.909 0.00 0.00 41.43 2.83
5202 6642 2.225019 CACTCCATCTGTGAAGTGCAAC 59.775 50.000 0.00 0.00 37.60 4.17
5248 6689 4.706476 TGGGAGATAAATGCCAAACTCTTG 59.294 41.667 0.00 0.00 37.80 3.02
5282 6723 1.672881 GATTGGCATTCGAGGAGTTGG 59.327 52.381 0.00 0.00 0.00 3.77
5305 6746 2.642139 AGCGCAATTTCCTCAACATG 57.358 45.000 11.47 0.00 0.00 3.21
5353 6798 7.793902 AGAAGTTGATATTTGAACGTGTGTAC 58.206 34.615 0.00 0.00 0.00 2.90
5358 6803 8.251750 TCCTAAGAAGTTGATATTTGAACGTG 57.748 34.615 0.00 0.00 0.00 4.49
5485 6930 1.335810 TGGACCTCGATATTTCCGACG 59.664 52.381 0.00 0.00 32.18 5.12
5538 6986 3.220674 AGCATTAGGGGCATTCTCTTC 57.779 47.619 0.00 0.00 0.00 2.87
5540 6988 3.677156 AAAGCATTAGGGGCATTCTCT 57.323 42.857 0.00 0.00 0.00 3.10
5541 6989 3.701040 TGAAAAGCATTAGGGGCATTCTC 59.299 43.478 0.00 0.00 33.33 2.87
5542 6990 3.711863 TGAAAAGCATTAGGGGCATTCT 58.288 40.909 0.00 0.00 33.33 2.40
5543 6991 4.470334 TTGAAAAGCATTAGGGGCATTC 57.530 40.909 0.00 0.00 33.00 2.67
5544 6992 4.286808 ACTTTGAAAAGCATTAGGGGCATT 59.713 37.500 2.69 0.00 39.63 3.56
5545 6993 3.840078 ACTTTGAAAAGCATTAGGGGCAT 59.160 39.130 2.69 0.00 39.63 4.40
5569 7018 9.684448 CATGTGTCTACCTAACTAGTATGAATG 57.316 37.037 0.00 0.00 0.00 2.67
5576 7025 6.482524 TCTCACATGTGTCTACCTAACTAGT 58.517 40.000 24.63 0.00 0.00 2.57
5608 9645 1.080298 GTGTTGGCAGCCAGCATTC 60.080 57.895 31.25 17.35 45.72 2.67
5666 9721 4.094739 TGACGTCCGAAGAAACGTGATATA 59.905 41.667 14.12 0.00 46.23 0.86
5675 9730 1.602165 GCTGTCTGACGTCCGAAGAAA 60.602 52.381 14.12 3.55 0.00 2.52
5682 9737 1.154188 GTCTCGCTGTCTGACGTCC 60.154 63.158 14.12 0.00 0.00 4.79
5699 9758 5.509716 TCGATTGGAACTCGTATGTATGT 57.490 39.130 0.00 0.00 37.40 2.29
5709 9768 5.411781 TCTTAAGAAGCTCGATTGGAACTC 58.588 41.667 1.68 0.00 0.00 3.01
5750 9809 2.250939 TCGTCTGGTTTTGCTGGCG 61.251 57.895 0.00 0.00 0.00 5.69
5769 9828 2.187707 GTGCGCATGCTTTATCTTTGG 58.812 47.619 15.91 0.00 43.34 3.28
5783 9842 3.805891 TAGTGCTGCTGTGTGCGCA 62.806 57.895 5.66 5.66 46.63 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.