Multiple sequence alignment - TraesCS5A01G265000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G265000 chr5A 100.000 4085 0 0 1 4085 476850950 476855034 0.000000e+00 7544.0
1 TraesCS5A01G265000 chr5D 93.730 4131 182 35 3 4085 375747512 375751613 0.000000e+00 6122.0
2 TraesCS5A01G265000 chr5B 92.099 4126 208 53 3 4085 448600322 448604372 0.000000e+00 5705.0
3 TraesCS5A01G265000 chr7A 86.047 86 4 2 1246 1323 202520927 202520842 7.280000e-13 86.1
4 TraesCS5A01G265000 chr7D 94.444 36 2 0 1246 1281 192929259 192929224 5.700000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G265000 chr5A 476850950 476855034 4084 False 7544 7544 100.000 1 4085 1 chr5A.!!$F1 4084
1 TraesCS5A01G265000 chr5D 375747512 375751613 4101 False 6122 6122 93.730 3 4085 1 chr5D.!!$F1 4082
2 TraesCS5A01G265000 chr5B 448600322 448604372 4050 False 5705 5705 92.099 3 4085 1 chr5B.!!$F1 4082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 886 0.034059 CCTTAGTAGGCTCATGGGCG 59.966 60.0 12.39 0.0 45.89 6.13 F
861 891 0.530870 GTAGGCTCATGGGCGAACTC 60.531 60.0 12.39 0.0 45.89 3.01 F
1885 1934 0.593128 CGGTGCTTTTGTCTCCCTTG 59.407 55.0 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1915 0.593128 CAAGGGAGACAAAAGCACCG 59.407 55.000 0.0 0.0 0.00 4.94 R
1896 1945 1.210931 CCTGCACATTTGTCCAGCG 59.789 57.895 0.0 0.0 0.00 5.18 R
3617 3682 0.947180 GAAAGGAACGTGTGCGGCTA 60.947 55.000 0.0 0.0 43.45 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.071784 TGCAACAAGCTGTATTCATCAGAATT 60.072 34.615 0.00 0.00 42.10 2.17
60 62 2.352503 ATGCGCAACATTTTGACCTC 57.647 45.000 17.11 0.00 34.40 3.85
72 79 8.950210 CAACATTTTGACCTCATAGTTATCAGT 58.050 33.333 0.00 0.00 34.24 3.41
73 80 8.498054 ACATTTTGACCTCATAGTTATCAGTG 57.502 34.615 0.00 0.00 0.00 3.66
74 81 6.985188 TTTTGACCTCATAGTTATCAGTGC 57.015 37.500 0.00 0.00 0.00 4.40
75 82 4.307443 TGACCTCATAGTTATCAGTGCG 57.693 45.455 0.00 0.00 0.00 5.34
89 96 0.241213 AGTGCGACCCATATCGATCG 59.759 55.000 9.36 9.36 45.13 3.69
101 108 4.546570 CATATCGATCGCTACCAGTTCAA 58.453 43.478 11.09 0.00 0.00 2.69
252 259 4.927978 GAAGAGATCCATCCGAGAAGAA 57.072 45.455 0.00 0.00 0.00 2.52
253 260 4.870363 GAAGAGATCCATCCGAGAAGAAG 58.130 47.826 0.00 0.00 0.00 2.85
332 339 0.684805 CGTAGAACCCCCTCAGCTCT 60.685 60.000 0.00 0.00 0.00 4.09
662 669 1.448717 GAGGTCGCAGAAGCCCTTC 60.449 63.158 0.00 0.00 39.69 3.46
797 804 2.496817 GACTTCGGCCAGCGAGAT 59.503 61.111 2.24 0.00 0.00 2.75
841 871 3.818295 ACTGGTGTTAATTGGGCCTTA 57.182 42.857 4.53 0.00 0.00 2.69
842 872 3.697166 ACTGGTGTTAATTGGGCCTTAG 58.303 45.455 4.53 0.00 0.00 2.18
843 873 3.075432 ACTGGTGTTAATTGGGCCTTAGT 59.925 43.478 4.53 0.00 0.00 2.24
844 874 4.290196 ACTGGTGTTAATTGGGCCTTAGTA 59.710 41.667 4.53 0.00 0.00 1.82
845 875 4.850680 TGGTGTTAATTGGGCCTTAGTAG 58.149 43.478 4.53 0.00 0.00 2.57
856 886 0.034059 CCTTAGTAGGCTCATGGGCG 59.966 60.000 12.39 0.00 45.89 6.13
857 887 1.040646 CTTAGTAGGCTCATGGGCGA 58.959 55.000 12.39 0.00 45.89 5.54
859 889 0.750850 TAGTAGGCTCATGGGCGAAC 59.249 55.000 12.39 12.08 45.89 3.95
860 890 0.978146 AGTAGGCTCATGGGCGAACT 60.978 55.000 12.39 14.30 45.89 3.01
861 891 0.530870 GTAGGCTCATGGGCGAACTC 60.531 60.000 12.39 0.00 45.89 3.01
862 892 0.975556 TAGGCTCATGGGCGAACTCA 60.976 55.000 12.39 0.00 45.89 3.41
863 893 1.153086 GGCTCATGGGCGAACTCAT 60.153 57.895 12.39 0.00 0.00 2.90
864 894 1.442526 GGCTCATGGGCGAACTCATG 61.443 60.000 12.39 0.00 41.35 3.07
908 940 2.366584 CGTTACGCGTCGCCTCAAA 61.367 57.895 18.63 0.00 35.54 2.69
967 999 2.920076 AAAGCCCCAAACACAGCCGA 62.920 55.000 0.00 0.00 0.00 5.54
968 1000 3.670377 GCCCCAAACACAGCCGAC 61.670 66.667 0.00 0.00 0.00 4.79
1086 1125 2.022934 GTATCCGTTCGTTCCTCCTCT 58.977 52.381 0.00 0.00 0.00 3.69
1089 1128 0.889306 CCGTTCGTTCCTCCTCTTCT 59.111 55.000 0.00 0.00 0.00 2.85
1385 1424 5.104900 TCAGGGTTTGCTTCTACTTATCTCC 60.105 44.000 0.00 0.00 0.00 3.71
1392 1431 6.412362 TGCTTCTACTTATCTCCTCCATTC 57.588 41.667 0.00 0.00 0.00 2.67
1410 1449 6.163476 TCCATTCCGATCTTATTTGGATACG 58.837 40.000 0.00 0.00 42.51 3.06
1422 1461 2.267642 GATACGCAGTGGCCACCA 59.732 61.111 32.29 12.87 45.73 4.17
1435 1474 3.828451 GTGGCCACCATATGCTATCAAAT 59.172 43.478 26.31 0.00 35.28 2.32
1441 1480 3.828451 ACCATATGCTATCAAATGTGCCC 59.172 43.478 0.00 0.00 0.00 5.36
1461 1510 3.363280 CCCGTGCTGTTTAAACGAGTTAC 60.363 47.826 13.45 12.52 39.64 2.50
1465 1514 6.128742 CCGTGCTGTTTAAACGAGTTACTATT 60.129 38.462 13.45 0.00 39.64 1.73
1519 1568 1.045911 GGGCTCCACCTCCACTAGAG 61.046 65.000 0.00 0.00 42.83 2.43
1535 1584 3.679980 ACTAGAGCGTTGCACATTTGTAG 59.320 43.478 0.00 0.00 0.00 2.74
1537 1586 3.659786 AGAGCGTTGCACATTTGTAGTA 58.340 40.909 0.00 0.00 0.00 1.82
1596 1645 7.218228 TGTTGAATCAGCAATACAAGTGAAT 57.782 32.000 0.00 0.00 0.00 2.57
1597 1646 7.660112 TGTTGAATCAGCAATACAAGTGAATT 58.340 30.769 0.00 0.00 0.00 2.17
1599 1648 6.623486 TGAATCAGCAATACAAGTGAATTGG 58.377 36.000 0.00 0.00 43.68 3.16
1613 1662 7.224557 ACAAGTGAATTGGCAAAGTAATGTTTC 59.775 33.333 3.01 1.31 43.68 2.78
1615 1664 5.988561 GTGAATTGGCAAAGTAATGTTTCCA 59.011 36.000 3.01 0.00 0.00 3.53
1744 1793 1.882623 CCCAGAGTGAAAAGGTTGAGC 59.117 52.381 0.00 0.00 0.00 4.26
1749 1798 2.291741 GAGTGAAAAGGTTGAGCTGGTG 59.708 50.000 0.00 0.00 0.00 4.17
1866 1915 1.118838 ACAGAGAGTATGCTCCCAGC 58.881 55.000 7.25 0.00 42.59 4.85
1868 1917 1.112315 AGAGAGTATGCTCCCAGCGG 61.112 60.000 7.25 0.00 46.26 5.52
1885 1934 0.593128 CGGTGCTTTTGTCTCCCTTG 59.407 55.000 0.00 0.00 0.00 3.61
1896 1945 7.148390 GCTTTTGTCTCCCTTGTATTCTCTTAC 60.148 40.741 0.00 0.00 0.00 2.34
2095 2144 1.070445 TGTACTTTTCGGAGGCGGAAA 59.930 47.619 0.00 0.00 32.39 3.13
2098 2147 2.353323 ACTTTTCGGAGGCGGAAATAC 58.647 47.619 0.00 0.00 33.87 1.89
2100 2149 0.107557 TTTCGGAGGCGGAAATACCC 60.108 55.000 0.00 0.00 34.64 3.69
2101 2150 1.974973 TTCGGAGGCGGAAATACCCC 61.975 60.000 0.00 0.00 34.64 4.95
2154 2203 4.753516 TTGTCCTGGTCATATACACCTG 57.246 45.455 0.00 4.12 34.66 4.00
2318 2373 8.553459 AACAAGAGTTGTATAACATTCAGGAG 57.447 34.615 5.08 0.00 44.59 3.69
2336 2391 2.266554 GAGTGTGAAGAGAAGGATGCG 58.733 52.381 0.00 0.00 0.00 4.73
2396 2451 0.666913 CTGCTGATGCCAAGGTATGC 59.333 55.000 0.00 0.00 38.71 3.14
2433 2488 0.960364 ATGCTACTTTGTGGGTGGCG 60.960 55.000 0.00 0.00 42.68 5.69
2434 2489 2.978018 GCTACTTTGTGGGTGGCGC 61.978 63.158 0.00 0.00 32.13 6.53
2448 2503 2.094752 GGTGGCGCATTCTTACAACATT 60.095 45.455 10.83 0.00 0.00 2.71
2583 2638 7.102847 AGCAGTTATTCTAGGTTCTACTGTC 57.897 40.000 0.00 0.00 35.25 3.51
2588 2643 9.924010 AGTTATTCTAGGTTCTACTGTCTGTAT 57.076 33.333 0.00 0.00 0.00 2.29
2637 2693 3.071457 TCAGGTGAAATGCTGACTTCTCA 59.929 43.478 0.00 0.00 0.00 3.27
2725 2781 5.181748 ACTTAAATACAGCCTGCTCTGAAG 58.818 41.667 7.91 0.00 37.51 3.02
2798 2854 4.468713 TCATCATCGGATTCTGAGTCTCT 58.531 43.478 0.65 0.00 0.00 3.10
2831 2887 5.363939 GAGAGAATACCTTAATGTGCAGCT 58.636 41.667 0.00 0.00 0.00 4.24
2961 3017 8.359642 CCACTCAAAGAGAAATGTTTAAATCCA 58.640 33.333 0.31 0.00 33.32 3.41
3081 3137 8.938883 AGGAATAAAGCTACAAAGAGATGGATA 58.061 33.333 0.00 0.00 0.00 2.59
3097 3153 4.790765 TGGATATAGAATCTGGACTGCG 57.209 45.455 0.00 0.00 0.00 5.18
3113 3169 4.113354 GACTGCGAGAACTTATTACCAGG 58.887 47.826 0.00 0.00 0.00 4.45
3168 3224 6.992123 TCATCTCATTATGCCACGAAGTTTAT 59.008 34.615 0.00 0.00 41.61 1.40
3194 3253 9.923143 TTGAATATCTTACGTCAAAGAAGAAGA 57.077 29.630 4.94 0.56 38.90 2.87
3195 3254 9.923143 TGAATATCTTACGTCAAAGAAGAAGAA 57.077 29.630 4.94 0.00 38.90 2.52
3250 3309 4.642885 TCATCTTTTTGACGGGTTCTGTTT 59.357 37.500 0.00 0.00 0.00 2.83
3290 3349 7.562454 TGAATGCATAATTCTTCTCCCTCAATT 59.438 33.333 0.00 0.00 44.42 2.32
3338 3398 1.541147 TGGCTGCATCTTTGTAGTTGC 59.459 47.619 0.50 0.00 44.02 4.17
3354 3414 3.844640 AGTTGCCACCCTTCATTAGTTT 58.155 40.909 0.00 0.00 0.00 2.66
3392 3452 7.042051 CGTCACTTAATCTTCCACTCAGAAAAA 60.042 37.037 0.00 0.00 0.00 1.94
3394 3454 7.445402 TCACTTAATCTTCCACTCAGAAAAAGG 59.555 37.037 0.00 0.00 0.00 3.11
3617 3682 6.644347 AGGACGACACTTCTATGAATTCAAT 58.356 36.000 13.09 4.08 0.00 2.57
3967 4039 2.301296 CCAATCCATGATCTAGGCTCGT 59.699 50.000 0.00 0.00 0.00 4.18
4017 4089 5.233083 TGTCATTTGGATCTCAACAGTCT 57.767 39.130 0.00 0.00 34.67 3.24
4032 4104 0.980231 AGTCTGCATCTCCCTGGTCC 60.980 60.000 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.712057 ATACAGCTTGTTGCAGTTGC 57.288 45.000 0.00 0.00 45.94 4.17
38 40 4.233789 GAGGTCAAAATGTTGCGCATTAA 58.766 39.130 12.75 0.00 46.29 1.40
39 41 3.254411 TGAGGTCAAAATGTTGCGCATTA 59.746 39.130 12.75 3.16 46.29 1.90
60 62 3.452755 TGGGTCGCACTGATAACTATG 57.547 47.619 0.00 0.00 0.00 2.23
74 81 1.202154 GGTAGCGATCGATATGGGTCG 60.202 57.143 21.57 15.25 42.74 4.79
75 82 1.816835 TGGTAGCGATCGATATGGGTC 59.183 52.381 21.57 4.22 0.00 4.46
89 96 2.666026 GCTTTTGCTTGAACTGGTAGC 58.334 47.619 0.00 0.00 43.35 3.58
149 156 5.731599 TGTGCTTTTTATGGTTTGCTTTG 57.268 34.783 0.00 0.00 0.00 2.77
162 169 8.851541 ATGTGATGGAATAATTTGTGCTTTTT 57.148 26.923 0.00 0.00 0.00 1.94
251 258 5.596772 GCTCTACTTCTGATCTAGGTTCCTT 59.403 44.000 0.00 0.00 0.00 3.36
252 259 5.137551 GCTCTACTTCTGATCTAGGTTCCT 58.862 45.833 0.00 0.00 0.00 3.36
253 260 4.279922 GGCTCTACTTCTGATCTAGGTTCC 59.720 50.000 0.00 0.00 0.00 3.62
332 339 1.003118 GTCATACTGAACTGCACCCCA 59.997 52.381 0.00 0.00 0.00 4.96
662 669 4.244802 GAGCTCGGCGACCTCTCG 62.245 72.222 21.71 6.12 43.28 4.04
741 748 3.137637 AACAACCGCAAGCAGCCAC 62.138 57.895 0.00 0.00 41.38 5.01
780 787 1.880340 CATCTCGCTGGCCGAAGTC 60.880 63.158 0.00 0.00 46.81 3.01
782 789 2.587194 CCATCTCGCTGGCCGAAG 60.587 66.667 0.00 0.00 46.81 3.79
790 797 2.043852 ACGTCCCTCCATCTCGCT 60.044 61.111 0.00 0.00 0.00 4.93
792 799 0.530744 TTTGACGTCCCTCCATCTCG 59.469 55.000 14.12 0.00 0.00 4.04
797 804 1.065709 GCCTTATTTGACGTCCCTCCA 60.066 52.381 14.12 0.00 0.00 3.86
841 871 0.978146 AGTTCGCCCATGAGCCTACT 60.978 55.000 0.00 0.00 0.00 2.57
842 872 0.530870 GAGTTCGCCCATGAGCCTAC 60.531 60.000 0.00 0.00 0.00 3.18
843 873 0.975556 TGAGTTCGCCCATGAGCCTA 60.976 55.000 0.00 0.00 0.00 3.93
844 874 1.630126 ATGAGTTCGCCCATGAGCCT 61.630 55.000 0.00 0.00 0.00 4.58
845 875 1.153086 ATGAGTTCGCCCATGAGCC 60.153 57.895 0.00 0.00 0.00 4.70
847 877 1.012086 CACATGAGTTCGCCCATGAG 58.988 55.000 0.00 0.00 41.88 2.90
848 878 0.392863 CCACATGAGTTCGCCCATGA 60.393 55.000 0.00 0.00 41.88 3.07
849 879 1.378882 CCCACATGAGTTCGCCCATG 61.379 60.000 0.00 0.00 44.12 3.66
850 880 1.077501 CCCACATGAGTTCGCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
853 883 3.134127 GGCCCACATGAGTTCGCC 61.134 66.667 0.00 0.00 33.54 5.54
854 884 3.499737 CGGCCCACATGAGTTCGC 61.500 66.667 0.00 0.00 0.00 4.70
856 886 0.815615 GATCCGGCCCACATGAGTTC 60.816 60.000 0.00 0.00 0.00 3.01
857 887 1.224592 GATCCGGCCCACATGAGTT 59.775 57.895 0.00 0.00 0.00 3.01
859 889 0.034059 GTAGATCCGGCCCACATGAG 59.966 60.000 0.00 0.00 0.00 2.90
860 890 0.689412 TGTAGATCCGGCCCACATGA 60.689 55.000 0.00 0.00 0.00 3.07
861 891 0.180171 TTGTAGATCCGGCCCACATG 59.820 55.000 0.00 0.00 0.00 3.21
862 892 0.916086 TTTGTAGATCCGGCCCACAT 59.084 50.000 0.00 0.00 0.00 3.21
863 893 0.251916 CTTTGTAGATCCGGCCCACA 59.748 55.000 0.00 0.00 0.00 4.17
864 894 0.539986 TCTTTGTAGATCCGGCCCAC 59.460 55.000 0.00 0.00 0.00 4.61
908 940 4.335400 AAGTGGTTTTCGAAATGCCAAT 57.665 36.364 26.12 23.73 0.00 3.16
967 999 2.352323 GCGTTTCGATTTGGGGATTTGT 60.352 45.455 0.00 0.00 0.00 2.83
968 1000 2.258755 GCGTTTCGATTTGGGGATTTG 58.741 47.619 0.00 0.00 0.00 2.32
1068 1107 1.477295 GAAGAGGAGGAACGAACGGAT 59.523 52.381 0.00 0.00 0.00 4.18
1233 1272 4.498520 CACGCCGTCGCCTCATCT 62.499 66.667 0.00 0.00 39.84 2.90
1385 1424 6.311445 CGTATCCAAATAAGATCGGAATGGAG 59.689 42.308 13.22 1.13 38.74 3.86
1392 1431 4.150627 CACTGCGTATCCAAATAAGATCGG 59.849 45.833 0.00 0.00 0.00 4.18
1410 1449 0.179020 TAGCATATGGTGGCCACTGC 60.179 55.000 33.91 32.04 42.36 4.40
1422 1461 3.503363 CACGGGCACATTTGATAGCATAT 59.497 43.478 0.00 0.00 0.00 1.78
1435 1474 0.382515 GTTTAAACAGCACGGGCACA 59.617 50.000 14.57 0.00 44.61 4.57
1441 1480 4.703899 AGTAACTCGTTTAAACAGCACG 57.296 40.909 18.07 4.78 35.18 5.34
1485 1534 2.103263 GGAGCCCAATCACCTAGTACTG 59.897 54.545 5.39 0.00 0.00 2.74
1488 1537 2.116238 GTGGAGCCCAATCACCTAGTA 58.884 52.381 0.00 0.00 34.18 1.82
1489 1538 0.912486 GTGGAGCCCAATCACCTAGT 59.088 55.000 0.00 0.00 34.18 2.57
1490 1539 0.181350 GGTGGAGCCCAATCACCTAG 59.819 60.000 0.00 0.00 45.36 3.02
1491 1540 2.307153 GGTGGAGCCCAATCACCTA 58.693 57.895 0.00 0.00 45.36 3.08
1492 1541 3.090765 GGTGGAGCCCAATCACCT 58.909 61.111 0.00 0.00 45.36 4.00
1494 1543 1.077429 GGAGGTGGAGCCCAATCAC 60.077 63.158 0.00 0.00 38.26 3.06
1495 1544 1.541118 TGGAGGTGGAGCCCAATCA 60.541 57.895 0.00 0.00 38.26 2.57
1519 1568 6.255215 ACAATATACTACAAATGTGCAACGC 58.745 36.000 0.00 0.00 42.39 4.84
1555 1604 9.658799 TGATTCAACAAGGTAAAAATTGAACAA 57.341 25.926 0.17 0.00 40.88 2.83
1557 1606 8.275632 GCTGATTCAACAAGGTAAAAATTGAAC 58.724 33.333 0.17 0.00 40.88 3.18
1558 1607 7.984050 TGCTGATTCAACAAGGTAAAAATTGAA 59.016 29.630 0.00 0.00 41.92 2.69
1560 1609 7.712264 TGCTGATTCAACAAGGTAAAAATTG 57.288 32.000 0.00 0.00 0.00 2.32
1562 1611 9.423061 GTATTGCTGATTCAACAAGGTAAAAAT 57.577 29.630 8.34 0.00 0.00 1.82
1566 1615 7.230510 ACTTGTATTGCTGATTCAACAAGGTAA 59.769 33.333 22.65 11.31 35.81 2.85
1569 1618 5.860182 CACTTGTATTGCTGATTCAACAAGG 59.140 40.000 22.65 13.23 35.81 3.61
1613 1662 1.100510 CACCTCATCCTGCACAATGG 58.899 55.000 4.23 0.00 0.00 3.16
1615 1664 0.330604 AGCACCTCATCCTGCACAAT 59.669 50.000 0.00 0.00 35.73 2.71
1744 1793 1.874562 GCTTCTTGCTGCTCACCAG 59.125 57.895 0.00 0.00 44.67 4.00
1850 1899 1.365633 CCGCTGGGAGCATACTCTC 59.634 63.158 0.00 0.00 44.43 3.20
1866 1915 0.593128 CAAGGGAGACAAAAGCACCG 59.407 55.000 0.00 0.00 0.00 4.94
1868 1917 4.762251 AGAATACAAGGGAGACAAAAGCAC 59.238 41.667 0.00 0.00 0.00 4.40
1885 1934 5.581085 ACATTTGTCCAGCGTAAGAGAATAC 59.419 40.000 0.00 0.00 43.02 1.89
1896 1945 1.210931 CCTGCACATTTGTCCAGCG 59.789 57.895 0.00 0.00 0.00 5.18
2137 2186 3.181451 ACATGCAGGTGTATATGACCAGG 60.181 47.826 1.71 0.00 35.76 4.45
2189 2238 9.132923 AGAATGATGATAAGAGCACATTTGAAT 57.867 29.630 0.00 0.00 0.00 2.57
2190 2239 8.515695 AGAATGATGATAAGAGCACATTTGAA 57.484 30.769 0.00 0.00 0.00 2.69
2318 2373 2.370281 TCGCATCCTTCTCTTCACAC 57.630 50.000 0.00 0.00 0.00 3.82
2336 2391 5.819901 AGCTGCAGTCAGTTCCTTTATAATC 59.180 40.000 16.64 0.00 42.29 1.75
2396 2451 5.258456 AGCATGCAAACATTGAGATAAGG 57.742 39.130 21.98 0.00 32.87 2.69
2409 2464 2.035704 CACCCACAAAGTAGCATGCAAA 59.964 45.455 21.98 4.29 0.00 3.68
2725 2781 1.896220 TTGCTTGACATCACTGGGAC 58.104 50.000 0.00 0.00 0.00 4.46
2763 2819 2.424557 GATGATGATGGGCTAGTGCTG 58.575 52.381 0.00 0.00 39.59 4.41
2798 2854 5.401531 AAGGTATTCTCTCGCTGTTACAA 57.598 39.130 0.00 0.00 0.00 2.41
2831 2887 2.574018 CCTGGAGTGCCGTCAGTGA 61.574 63.158 0.00 0.00 36.79 3.41
2961 3017 4.926832 CCAACGAAACTTGTTTCCACTTTT 59.073 37.500 17.31 4.23 0.00 2.27
2979 3035 2.755650 AGTTGCTTCTGTCTACCAACG 58.244 47.619 0.00 0.00 40.35 4.10
3034 3090 4.319766 CCTTGAATCTTGGTGACTTTGTCG 60.320 45.833 0.00 0.00 34.95 4.35
3081 3137 3.957497 AGTTCTCGCAGTCCAGATTCTAT 59.043 43.478 0.00 0.00 0.00 1.98
3113 3169 7.611213 ATTCAAGCATAAACAGTGTACCTAC 57.389 36.000 0.00 0.00 0.00 3.18
3168 3224 9.923143 TCTTCTTCTTTGACGTAAGATATTCAA 57.077 29.630 1.73 0.00 43.62 2.69
3194 3253 6.552350 AGAATGGCATATTTGATAGGTTGCTT 59.448 34.615 0.00 0.00 0.00 3.91
3195 3254 6.015688 CAGAATGGCATATTTGATAGGTTGCT 60.016 38.462 0.00 0.00 0.00 3.91
3196 3255 6.154445 CAGAATGGCATATTTGATAGGTTGC 58.846 40.000 0.00 0.00 0.00 4.17
3303 3362 3.382865 TGCAGCCACACACAAAAAGAATA 59.617 39.130 0.00 0.00 0.00 1.75
3338 3398 4.636206 GCACTAGAAACTAATGAAGGGTGG 59.364 45.833 0.00 0.00 0.00 4.61
3354 3414 6.114089 AGATTAAGTGACGACTAGCACTAGA 58.886 40.000 11.59 0.00 44.06 2.43
3392 3452 9.990868 AATTGGTAAGATTAAATACACCTTCCT 57.009 29.630 0.00 0.00 0.00 3.36
3617 3682 0.947180 GAAAGGAACGTGTGCGGCTA 60.947 55.000 0.00 0.00 43.45 3.93
3750 3816 6.321181 AGAAGTTGCAAGAGGAAATTGTTACA 59.679 34.615 0.00 0.00 33.52 2.41
3797 3863 7.944554 ACTTCCTTTCCTCATCTGAAATGTAAA 59.055 33.333 0.00 0.00 31.75 2.01
3811 3877 2.945456 ACCAACCAACTTCCTTTCCTC 58.055 47.619 0.00 0.00 0.00 3.71
3967 4039 4.819105 ACAACGGAGAAGATACCAATGA 57.181 40.909 0.00 0.00 0.00 2.57
4017 4089 0.326904 ATCAGGACCAGGGAGATGCA 60.327 55.000 0.00 0.00 0.00 3.96
4032 4104 6.683974 ATAAACGATGGGTTCAAGAATCAG 57.316 37.500 0.00 0.00 38.08 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.