Multiple sequence alignment - TraesCS5A01G264900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G264900 chr5A 100.000 2635 0 0 1 2635 476852757 476850123 0.000000e+00 4867.0
1 TraesCS5A01G264900 chr5D 91.315 2107 121 29 1 2070 375749330 375747249 0.000000e+00 2820.0
2 TraesCS5A01G264900 chr5D 88.768 552 31 13 2088 2635 375747189 375746665 0.000000e+00 647.0
3 TraesCS5A01G264900 chr5B 89.243 2101 146 42 6 2070 448602111 448600055 0.000000e+00 2555.0
4 TraesCS5A01G264900 chr5B 90.744 551 37 4 2089 2635 448599637 448599097 0.000000e+00 723.0
5 TraesCS5A01G264900 chr5B 84.793 217 28 3 1855 2070 448599909 448599697 2.050000e-51 213.0
6 TraesCS5A01G264900 chr7A 86.047 86 4 2 486 563 202520842 202520927 4.670000e-13 86.1
7 TraesCS5A01G264900 chr7D 94.444 36 2 0 528 563 192929224 192929259 3.660000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G264900 chr5A 476850123 476852757 2634 True 4867.000000 4867 100.0000 1 2635 1 chr5A.!!$R1 2634
1 TraesCS5A01G264900 chr5D 375746665 375749330 2665 True 1733.500000 2820 90.0415 1 2635 2 chr5D.!!$R1 2634
2 TraesCS5A01G264900 chr5B 448599097 448602111 3014 True 1163.666667 2555 88.2600 6 2635 3 chr5B.!!$R1 2629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 968 0.034059 GTAGATCCGGCCCACATGAG 59.966 60.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 2495 3.129287 CAGTGAACATTAATCCCACCAGC 59.871 47.826 7.42 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.874562 GCTTCTTGCTGCTCACCAG 59.125 57.895 0.00 0.00 44.67 4.00
192 193 0.330604 AGCACCTCATCCTGCACAAT 59.669 50.000 0.00 0.00 35.73 2.71
194 195 1.100510 CACCTCATCCTGCACAATGG 58.899 55.000 4.23 0.00 0.00 3.16
238 239 5.860182 CACTTGTATTGCTGATTCAACAAGG 59.140 40.000 22.65 13.23 35.81 3.61
241 242 7.230510 ACTTGTATTGCTGATTCAACAAGGTAA 59.769 33.333 22.65 11.31 35.81 2.85
247 248 7.712264 TGCTGATTCAACAAGGTAAAAATTG 57.288 32.000 0.00 0.00 0.00 2.32
249 250 7.984050 TGCTGATTCAACAAGGTAAAAATTGAA 59.016 29.630 0.00 0.00 41.92 2.69
250 251 8.275632 GCTGATTCAACAAGGTAAAAATTGAAC 58.724 33.333 0.17 0.00 40.88 3.18
288 289 6.255215 ACAATATACTACAAATGTGCAACGC 58.745 36.000 0.00 0.00 42.39 4.84
312 313 1.541118 TGGAGGTGGAGCCCAATCA 60.541 57.895 0.00 0.00 38.26 2.57
317 318 0.181350 GGTGGAGCCCAATCACCTAG 59.819 60.000 0.00 0.00 45.36 3.02
318 319 0.912486 GTGGAGCCCAATCACCTAGT 59.088 55.000 0.00 0.00 34.18 2.57
319 320 2.116238 GTGGAGCCCAATCACCTAGTA 58.884 52.381 0.00 0.00 34.18 1.82
320 321 2.116238 TGGAGCCCAATCACCTAGTAC 58.884 52.381 0.00 0.00 0.00 2.73
321 322 2.292918 TGGAGCCCAATCACCTAGTACT 60.293 50.000 0.00 0.00 0.00 2.73
322 323 2.103263 GGAGCCCAATCACCTAGTACTG 59.897 54.545 5.39 0.00 0.00 2.74
365 366 8.277713 TCAAATAGTAACTCGTTTAAACAGCAC 58.722 33.333 18.07 13.76 0.00 4.40
366 367 4.703899 AGTAACTCGTTTAAACAGCACG 57.296 40.909 18.07 4.78 35.18 5.34
372 383 0.382515 GTTTAAACAGCACGGGCACA 59.617 50.000 14.57 0.00 44.61 4.57
385 396 3.503363 CACGGGCACATTTGATAGCATAT 59.497 43.478 0.00 0.00 0.00 1.78
397 408 0.179020 TAGCATATGGTGGCCACTGC 60.179 55.000 33.91 32.04 42.36 4.40
415 426 4.150627 CACTGCGTATCCAAATAAGATCGG 59.849 45.833 0.00 0.00 0.00 4.18
422 433 6.311445 CGTATCCAAATAAGATCGGAATGGAG 59.689 42.308 13.22 1.13 38.74 3.86
574 585 4.498520 CACGCCGTCGCCTCATCT 62.499 66.667 0.00 0.00 39.84 2.90
739 750 1.477295 GAAGAGGAGGAACGAACGGAT 59.523 52.381 0.00 0.00 0.00 4.18
839 856 2.258755 GCGTTTCGATTTGGGGATTTG 58.741 47.619 0.00 0.00 0.00 2.32
899 917 4.335400 AAGTGGTTTTCGAAATGCCAAT 57.665 36.364 26.12 23.73 0.00 3.16
943 963 0.539986 TCTTTGTAGATCCGGCCCAC 59.460 55.000 0.00 0.00 0.00 4.61
945 965 0.916086 TTTGTAGATCCGGCCCACAT 59.084 50.000 0.00 0.00 0.00 3.21
948 968 0.034059 GTAGATCCGGCCCACATGAG 59.966 60.000 0.00 0.00 0.00 2.90
949 969 0.398522 TAGATCCGGCCCACATGAGT 60.399 55.000 0.00 0.00 0.00 3.41
950 970 1.224592 GATCCGGCCCACATGAGTT 59.775 57.895 0.00 0.00 0.00 3.01
951 971 0.815615 GATCCGGCCCACATGAGTTC 60.816 60.000 0.00 0.00 0.00 3.01
952 972 2.593468 ATCCGGCCCACATGAGTTCG 62.593 60.000 0.00 0.00 0.00 3.95
956 976 2.350895 CCCACATGAGTTCGCCCA 59.649 61.111 0.00 0.00 0.00 5.36
957 977 1.077501 CCCACATGAGTTCGCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
958 978 1.378882 CCCACATGAGTTCGCCCATG 61.379 60.000 0.00 0.00 44.12 3.66
960 980 1.012086 CACATGAGTTCGCCCATGAG 58.988 55.000 0.00 0.00 41.88 2.90
961 981 0.745845 ACATGAGTTCGCCCATGAGC 60.746 55.000 0.00 0.00 41.88 4.26
962 982 1.153086 ATGAGTTCGCCCATGAGCC 60.153 57.895 0.00 0.00 0.00 4.70
963 983 1.630126 ATGAGTTCGCCCATGAGCCT 61.630 55.000 0.00 0.00 0.00 4.58
964 984 0.975556 TGAGTTCGCCCATGAGCCTA 60.976 55.000 0.00 0.00 0.00 3.93
965 985 0.530870 GAGTTCGCCCATGAGCCTAC 60.531 60.000 0.00 0.00 0.00 3.18
966 986 0.978146 AGTTCGCCCATGAGCCTACT 60.978 55.000 0.00 0.00 0.00 2.57
1010 1053 1.065709 GCCTTATTTGACGTCCCTCCA 60.066 52.381 14.12 0.00 0.00 3.86
1015 1058 0.530744 TTTGACGTCCCTCCATCTCG 59.469 55.000 14.12 0.00 0.00 4.04
1017 1060 2.043852 ACGTCCCTCCATCTCGCT 60.044 61.111 0.00 0.00 0.00 4.93
1025 1068 2.587194 CCATCTCGCTGGCCGAAG 60.587 66.667 0.00 0.00 46.81 3.79
1027 1070 1.880340 CATCTCGCTGGCCGAAGTC 60.880 63.158 0.00 0.00 46.81 3.01
1066 1109 3.137637 AACAACCGCAAGCAGCCAC 62.138 57.895 0.00 0.00 41.38 5.01
1145 1188 4.244802 GAGCTCGGCGACCTCTCG 62.245 72.222 21.71 6.12 43.28 4.04
1475 1518 1.003118 GTCATACTGAACTGCACCCCA 59.997 52.381 0.00 0.00 0.00 4.96
1554 1597 4.279922 GGCTCTACTTCTGATCTAGGTTCC 59.720 50.000 0.00 0.00 0.00 3.62
1555 1598 5.137551 GCTCTACTTCTGATCTAGGTTCCT 58.862 45.833 0.00 0.00 0.00 3.36
1556 1599 5.596772 GCTCTACTTCTGATCTAGGTTCCTT 59.403 44.000 0.00 0.00 0.00 3.36
1645 1688 8.851541 ATGTGATGGAATAATTTGTGCTTTTT 57.148 26.923 0.00 0.00 0.00 1.94
1658 1701 5.731599 TGTGCTTTTTATGGTTTGCTTTG 57.268 34.783 0.00 0.00 0.00 2.77
1718 1761 2.666026 GCTTTTGCTTGAACTGGTAGC 58.334 47.619 0.00 0.00 43.35 3.58
1732 1775 1.816835 TGGTAGCGATCGATATGGGTC 59.183 52.381 21.57 4.22 0.00 4.46
1747 1795 3.452755 TGGGTCGCACTGATAACTATG 57.547 47.619 0.00 0.00 0.00 2.23
1768 1816 3.254411 TGAGGTCAAAATGTTGCGCATTA 59.746 39.130 12.75 3.16 46.29 1.90
1769 1817 4.233789 GAGGTCAAAATGTTGCGCATTAA 58.766 39.130 12.75 0.00 46.29 1.40
1806 1855 2.712057 ATACAGCTTGTTGCAGTTGC 57.288 45.000 0.00 0.00 45.94 4.17
1820 1869 3.953766 GCAGTTGCATTGAGATGATGAG 58.046 45.455 0.00 0.00 41.59 2.90
1848 1897 0.035630 ATCCAGTCTCAGGCTTGCAC 60.036 55.000 0.00 0.00 0.00 4.57
1849 1898 1.673665 CCAGTCTCAGGCTTGCACC 60.674 63.158 0.00 0.00 0.00 5.01
1863 1912 3.989817 GCTTGCACCTAATTTTCACTTGG 59.010 43.478 0.00 0.00 0.00 3.61
1887 1936 9.802039 TGGAAGTACTAAAAGTAATGTTGGAAT 57.198 29.630 0.00 0.00 31.62 3.01
1894 1943 9.802039 ACTAAAAGTAATGTTGGAATGTTAGGA 57.198 29.630 0.00 0.00 0.00 2.94
1898 1947 9.981114 AAAGTAATGTTGGAATGTTAGGAAAAG 57.019 29.630 0.00 0.00 0.00 2.27
1911 1960 9.965824 AATGTTAGGAAAAGAAGTTATGTTGTG 57.034 29.630 0.00 0.00 0.00 3.33
2012 2064 7.621428 ATGGACACTGATGAGATTGTAAAAG 57.379 36.000 0.00 0.00 0.00 2.27
2016 2068 5.014123 ACACTGATGAGATTGTAAAAGGGGA 59.986 40.000 0.00 0.00 0.00 4.81
2070 2480 8.565896 ACTATTTTAGCATCTGTTGAATGTGA 57.434 30.769 0.00 0.00 0.00 3.58
2071 2481 9.013229 ACTATTTTAGCATCTGTTGAATGTGAA 57.987 29.630 0.00 0.00 0.00 3.18
2072 2482 9.282247 CTATTTTAGCATCTGTTGAATGTGAAC 57.718 33.333 0.00 0.00 0.00 3.18
2073 2483 6.882610 TTTAGCATCTGTTGAATGTGAACT 57.117 33.333 0.00 0.00 0.00 3.01
2075 2485 5.368256 AGCATCTGTTGAATGTGAACTTC 57.632 39.130 0.00 0.00 0.00 3.01
2076 2486 5.068636 AGCATCTGTTGAATGTGAACTTCT 58.931 37.500 0.00 0.00 0.00 2.85
2077 2487 5.533903 AGCATCTGTTGAATGTGAACTTCTT 59.466 36.000 0.00 0.00 0.00 2.52
2078 2488 6.040166 AGCATCTGTTGAATGTGAACTTCTTT 59.960 34.615 0.00 0.00 0.00 2.52
2079 2489 6.698766 GCATCTGTTGAATGTGAACTTCTTTT 59.301 34.615 0.00 0.00 0.00 2.27
2080 2490 7.096312 GCATCTGTTGAATGTGAACTTCTTTTC 60.096 37.037 0.00 0.00 0.00 2.29
2081 2491 7.630242 TCTGTTGAATGTGAACTTCTTTTCT 57.370 32.000 0.00 0.00 0.00 2.52
2083 2493 9.342308 TCTGTTGAATGTGAACTTCTTTTCTAT 57.658 29.630 0.00 0.00 0.00 1.98
2147 2600 4.079253 ACATGTGGAACTGTAATTGTCCC 58.921 43.478 0.00 0.00 38.04 4.46
2153 2606 6.488683 TGTGGAACTGTAATTGTCCCTTTTAG 59.511 38.462 0.00 0.00 38.04 1.85
2229 2685 7.504238 ACAGTTGTAAAATGAAGATGGGTTACA 59.496 33.333 0.00 0.00 46.37 2.41
2256 2713 9.294030 GATAAATGATTTTTAAGGTGTCTGCAG 57.706 33.333 7.63 7.63 0.00 4.41
2342 2799 9.971922 TGTACTTAGAGGAAACTGTTTACTTAC 57.028 33.333 18.53 15.65 44.43 2.34
2370 2827 8.612486 TGTTTACTATGTTAGGGATACTCCAA 57.388 34.615 0.00 0.00 38.64 3.53
2415 2872 9.639601 ATTTTTCCTTCGATGAAATTTTCCTAC 57.360 29.630 10.37 0.00 32.19 3.18
2488 2945 6.304356 TGCAAATCAACTTCTAGTGACAAG 57.696 37.500 0.00 0.00 0.00 3.16
2518 2975 4.096081 CAGTTTGAATCTTGAGATGGCCTC 59.904 45.833 3.32 0.00 42.30 4.70
2549 3006 1.072505 GGCACTCGTCTTTCCCCAA 59.927 57.895 0.00 0.00 0.00 4.12
2617 3074 3.908103 AGGATGGTGTTACTGTGTTAGGT 59.092 43.478 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.291741 GAGTGAAAAGGTTGAGCTGGTG 59.708 50.000 0.00 0.00 0.00 4.17
63 64 1.882623 CCCAGAGTGAAAAGGTTGAGC 59.117 52.381 0.00 0.00 0.00 4.26
192 193 5.988561 GTGAATTGGCAAAGTAATGTTTCCA 59.011 36.000 3.01 0.00 0.00 3.53
194 195 7.224557 ACAAGTGAATTGGCAAAGTAATGTTTC 59.775 33.333 3.01 1.31 43.68 2.78
208 209 6.623486 TGAATCAGCAATACAAGTGAATTGG 58.377 36.000 0.00 0.00 43.68 3.16
210 211 7.660112 TGTTGAATCAGCAATACAAGTGAATT 58.340 30.769 0.00 0.00 0.00 2.17
211 212 7.218228 TGTTGAATCAGCAATACAAGTGAAT 57.782 32.000 0.00 0.00 0.00 2.57
270 271 3.659786 AGAGCGTTGCACATTTGTAGTA 58.340 40.909 0.00 0.00 0.00 1.82
272 273 3.679980 ACTAGAGCGTTGCACATTTGTAG 59.320 43.478 0.00 0.00 0.00 2.74
288 289 1.045911 GGGCTCCACCTCCACTAGAG 61.046 65.000 0.00 0.00 42.83 2.43
342 343 6.128742 CCGTGCTGTTTAAACGAGTTACTATT 60.129 38.462 13.45 0.00 39.64 1.73
346 347 3.363280 CCCGTGCTGTTTAAACGAGTTAC 60.363 47.826 13.45 12.52 39.64 2.50
365 366 3.119743 CCATATGCTATCAAATGTGCCCG 60.120 47.826 0.00 0.00 0.00 6.13
366 367 3.828451 ACCATATGCTATCAAATGTGCCC 59.172 43.478 0.00 0.00 0.00 5.36
372 383 3.828451 GTGGCCACCATATGCTATCAAAT 59.172 43.478 26.31 0.00 35.28 2.32
385 396 2.267642 GATACGCAGTGGCCACCA 59.732 61.111 32.29 12.87 45.73 4.17
397 408 6.163476 TCCATTCCGATCTTATTTGGATACG 58.837 40.000 0.00 0.00 42.51 3.06
415 426 6.412362 TGCTTCTACTTATCTCCTCCATTC 57.588 41.667 0.00 0.00 0.00 2.67
422 433 5.104900 TCAGGGTTTGCTTCTACTTATCTCC 60.105 44.000 0.00 0.00 0.00 3.71
718 729 0.889306 CCGTTCGTTCCTCCTCTTCT 59.111 55.000 0.00 0.00 0.00 2.85
721 732 2.022934 GTATCCGTTCGTTCCTCCTCT 58.977 52.381 0.00 0.00 0.00 3.69
839 856 3.670377 GCCCCAAACACAGCCGAC 61.670 66.667 0.00 0.00 0.00 4.79
899 917 2.366584 CGTTACGCGTCGCCTCAAA 61.367 57.895 18.63 0.00 35.54 2.69
943 963 1.442526 GGCTCATGGGCGAACTCATG 61.443 60.000 12.39 0.00 41.35 3.07
945 965 0.975556 TAGGCTCATGGGCGAACTCA 60.976 55.000 12.39 0.00 45.89 3.41
948 968 0.750850 TAGTAGGCTCATGGGCGAAC 59.249 55.000 12.39 12.08 45.89 3.95
949 969 1.412710 CTTAGTAGGCTCATGGGCGAA 59.587 52.381 12.39 0.00 45.89 4.70
950 970 1.040646 CTTAGTAGGCTCATGGGCGA 58.959 55.000 12.39 0.00 45.89 5.54
951 971 0.034059 CCTTAGTAGGCTCATGGGCG 59.966 60.000 12.39 0.00 45.89 6.13
961 981 4.204799 GGTGTTAATTGGGCCTTAGTAGG 58.795 47.826 4.53 0.00 45.02 3.18
962 982 4.850680 TGGTGTTAATTGGGCCTTAGTAG 58.149 43.478 4.53 0.00 0.00 2.57
963 983 4.290196 ACTGGTGTTAATTGGGCCTTAGTA 59.710 41.667 4.53 0.00 0.00 1.82
964 984 3.075432 ACTGGTGTTAATTGGGCCTTAGT 59.925 43.478 4.53 0.00 0.00 2.24
965 985 3.697166 ACTGGTGTTAATTGGGCCTTAG 58.303 45.455 4.53 0.00 0.00 2.18
966 986 3.818295 ACTGGTGTTAATTGGGCCTTA 57.182 42.857 4.53 0.00 0.00 2.69
1010 1053 2.496817 GACTTCGGCCAGCGAGAT 59.503 61.111 2.24 0.00 0.00 2.75
1145 1188 1.448717 GAGGTCGCAGAAGCCCTTC 60.449 63.158 0.00 0.00 39.69 3.46
1475 1518 0.684805 CGTAGAACCCCCTCAGCTCT 60.685 60.000 0.00 0.00 0.00 4.09
1554 1597 4.870363 GAAGAGATCCATCCGAGAAGAAG 58.130 47.826 0.00 0.00 0.00 2.85
1555 1598 4.927978 GAAGAGATCCATCCGAGAAGAA 57.072 45.455 0.00 0.00 0.00 2.52
1706 1749 4.546570 CATATCGATCGCTACCAGTTCAA 58.453 43.478 11.09 0.00 0.00 2.69
1718 1761 0.241213 AGTGCGACCCATATCGATCG 59.759 55.000 9.36 9.36 45.13 3.69
1732 1775 4.307443 TGACCTCATAGTTATCAGTGCG 57.693 45.455 0.00 0.00 0.00 5.34
1734 1777 8.498054 ACATTTTGACCTCATAGTTATCAGTG 57.502 34.615 0.00 0.00 0.00 3.66
1735 1778 8.950210 CAACATTTTGACCTCATAGTTATCAGT 58.050 33.333 0.00 0.00 34.24 3.41
1747 1795 2.352503 ATGCGCAACATTTTGACCTC 57.647 45.000 17.11 0.00 34.40 3.85
1776 1825 6.071784 TGCAACAAGCTGTATTCATCAGAATT 60.072 34.615 0.00 0.00 42.10 2.17
1806 1855 8.894731 GGATATTTGGATCTCATCATCTCAATG 58.105 37.037 0.00 0.00 0.00 2.82
1820 1869 4.041444 AGCCTGAGACTGGATATTTGGATC 59.959 45.833 0.00 0.00 0.00 3.36
1880 1929 9.626045 CATAACTTCTTTTCCTAACATTCCAAC 57.374 33.333 0.00 0.00 0.00 3.77
1887 1936 8.617809 GTCACAACATAACTTCTTTTCCTAACA 58.382 33.333 0.00 0.00 0.00 2.41
1888 1937 8.617809 TGTCACAACATAACTTCTTTTCCTAAC 58.382 33.333 0.00 0.00 0.00 2.34
1890 1939 8.918202 ATGTCACAACATAACTTCTTTTCCTA 57.082 30.769 0.00 0.00 44.38 2.94
1929 1978 9.202273 GTATTCTTGATTTTACCAATGCAAACA 57.798 29.630 0.00 0.00 0.00 2.83
1988 2040 6.600822 CCTTTTACAATCTCATCAGTGTCCAT 59.399 38.462 0.00 0.00 0.00 3.41
1998 2050 5.211201 CCCATTCCCCTTTTACAATCTCAT 58.789 41.667 0.00 0.00 0.00 2.90
2012 2064 3.575687 CTCAAATATTCAGCCCATTCCCC 59.424 47.826 0.00 0.00 0.00 4.81
2016 2068 5.393068 TCTCCTCAAATATTCAGCCCATT 57.607 39.130 0.00 0.00 0.00 3.16
2070 2480 5.250774 TCCCACCAGCTATAGAAAAGAAGTT 59.749 40.000 3.21 0.00 0.00 2.66
2071 2481 4.783227 TCCCACCAGCTATAGAAAAGAAGT 59.217 41.667 3.21 0.00 0.00 3.01
2072 2482 5.359194 TCCCACCAGCTATAGAAAAGAAG 57.641 43.478 3.21 0.00 0.00 2.85
2073 2483 5.975988 ATCCCACCAGCTATAGAAAAGAA 57.024 39.130 3.21 0.00 0.00 2.52
2075 2485 7.721399 ACATTAATCCCACCAGCTATAGAAAAG 59.279 37.037 3.21 0.00 0.00 2.27
2076 2486 7.582719 ACATTAATCCCACCAGCTATAGAAAA 58.417 34.615 3.21 0.00 0.00 2.29
2077 2487 7.149202 ACATTAATCCCACCAGCTATAGAAA 57.851 36.000 3.21 0.00 0.00 2.52
2078 2488 6.763715 ACATTAATCCCACCAGCTATAGAA 57.236 37.500 3.21 0.00 0.00 2.10
2079 2489 6.328934 TGAACATTAATCCCACCAGCTATAGA 59.671 38.462 3.21 0.00 0.00 1.98
2080 2490 6.428159 GTGAACATTAATCCCACCAGCTATAG 59.572 42.308 0.00 0.00 0.00 1.31
2081 2491 6.101150 AGTGAACATTAATCCCACCAGCTATA 59.899 38.462 0.00 0.00 0.00 1.31
2083 2493 4.227300 AGTGAACATTAATCCCACCAGCTA 59.773 41.667 0.00 0.00 0.00 3.32
2085 2495 3.129287 CAGTGAACATTAATCCCACCAGC 59.871 47.826 7.42 0.00 0.00 4.85
2119 2571 6.775629 ACAATTACAGTTCCACATGTACCTTT 59.224 34.615 0.00 0.00 31.83 3.11
2202 2658 9.005777 GTAACCCATCTTCATTTTACAACTGTA 57.994 33.333 0.00 0.00 0.00 2.74
2229 2685 9.023962 TGCAGACACCTTAAAAATCATTTATCT 57.976 29.630 0.00 0.00 0.00 1.98
2256 2713 8.233190 GCAGACATACTATTCTATGGCAAATTC 58.767 37.037 0.00 0.00 34.88 2.17
2264 2721 9.874215 CACATTTTGCAGACATACTATTCTATG 57.126 33.333 0.00 0.00 0.00 2.23
2300 2757 7.836842 TCTAAGTACATGCAGAAGAACATACA 58.163 34.615 0.00 0.00 0.00 2.29
2308 2765 6.312426 CAGTTTCCTCTAAGTACATGCAGAAG 59.688 42.308 0.00 0.00 0.00 2.85
2370 2827 7.224557 GGAAAAATAGTGCAGTGTGACAAAAAT 59.775 33.333 3.69 0.00 0.00 1.82
2372 2829 6.039616 GGAAAAATAGTGCAGTGTGACAAAA 58.960 36.000 3.69 0.00 0.00 2.44
2415 2872 9.961266 CATTTACATAATCACAAAACAATGCTG 57.039 29.630 0.00 0.00 0.00 4.41
2461 2918 7.715657 TGTCACTAGAAGTTGATTTGCAAAAT 58.284 30.769 17.19 4.89 38.44 1.82
2470 2927 8.367911 TGTACAATCTTGTCACTAGAAGTTGAT 58.632 33.333 8.90 0.00 42.35 2.57
2488 2945 8.180267 CCATCTCAAGATTCAAACTGTACAATC 58.820 37.037 0.00 0.00 31.21 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.