Multiple sequence alignment - TraesCS5A01G264400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G264400 chr5A 100.000 4111 0 0 1 4111 476670854 476666744 0.000000e+00 7592
1 TraesCS5A01G264400 chr5D 90.756 3202 159 56 719 3851 375312658 375309525 0.000000e+00 4146
2 TraesCS5A01G264400 chr5D 87.025 632 73 8 20 644 554864842 554865471 0.000000e+00 704
3 TraesCS5A01G264400 chr5D 86.795 621 70 10 1 613 456748796 456749412 0.000000e+00 682
4 TraesCS5A01G264400 chr5D 80.311 193 17 16 3925 4111 375309501 375309324 4.310000e-25 126
5 TraesCS5A01G264400 chr5B 91.759 1723 101 20 2325 4021 448131354 448129647 0.000000e+00 2357
6 TraesCS5A01G264400 chr5B 89.326 1068 73 22 719 1757 448133090 448132035 0.000000e+00 1303
7 TraesCS5A01G264400 chr5B 93.382 408 26 1 1940 2347 448131924 448131518 1.630000e-168 603
8 TraesCS5A01G264400 chr5B 88.000 100 3 4 4019 4111 448129599 448129502 4.340000e-20 110
9 TraesCS5A01G264400 chr6A 90.199 653 55 8 1 644 15762524 15763176 0.000000e+00 843
10 TraesCS5A01G264400 chr6A 87.443 653 67 13 1 643 498945854 498946501 0.000000e+00 737
11 TraesCS5A01G264400 chr1A 88.702 655 62 11 1 644 26058783 26058130 0.000000e+00 789
12 TraesCS5A01G264400 chr3D 89.701 602 48 11 1 593 586515629 586515033 0.000000e+00 756
13 TraesCS5A01G264400 chr3D 89.708 583 51 7 985 1567 502125571 502126144 0.000000e+00 736
14 TraesCS5A01G264400 chr3D 87.156 654 70 13 1 644 26669823 26670472 0.000000e+00 730
15 TraesCS5A01G264400 chr3D 89.555 517 54 0 2613 3129 502126664 502127180 0.000000e+00 656
16 TraesCS5A01G264400 chr3D 86.523 371 49 1 1946 2316 502126202 502126571 1.380000e-109 407
17 TraesCS5A01G264400 chr2B 87.270 652 74 7 1 644 90503327 90502677 0.000000e+00 736
18 TraesCS5A01G264400 chr3A 90.450 555 49 3 1033 1584 641558084 641558637 0.000000e+00 728
19 TraesCS5A01G264400 chr3A 88.555 533 59 2 2598 3129 641559120 641559651 0.000000e+00 645
20 TraesCS5A01G264400 chr3A 86.798 356 47 0 1946 2301 641558679 641559034 8.280000e-107 398
21 TraesCS5A01G264400 chr7A 86.910 657 75 10 1 647 470893160 470892505 0.000000e+00 726
22 TraesCS5A01G264400 chr3B 87.242 533 68 0 2597 3129 663408494 663409026 3.510000e-170 608
23 TraesCS5A01G264400 chr3B 86.304 533 71 1 2597 3129 663335474 663336004 2.760000e-161 579
24 TraesCS5A01G264400 chr3B 85.798 514 68 4 1033 1546 663364047 663364555 1.300000e-149 540
25 TraesCS5A01G264400 chr3B 84.766 512 72 5 1035 1546 663291227 663291732 3.670000e-140 508


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G264400 chr5A 476666744 476670854 4110 True 7592.000000 7592 100.000000 1 4111 1 chr5A.!!$R1 4110
1 TraesCS5A01G264400 chr5D 375309324 375312658 3334 True 2136.000000 4146 85.533500 719 4111 2 chr5D.!!$R1 3392
2 TraesCS5A01G264400 chr5D 554864842 554865471 629 False 704.000000 704 87.025000 20 644 1 chr5D.!!$F2 624
3 TraesCS5A01G264400 chr5D 456748796 456749412 616 False 682.000000 682 86.795000 1 613 1 chr5D.!!$F1 612
4 TraesCS5A01G264400 chr5B 448129502 448133090 3588 True 1093.250000 2357 90.616750 719 4111 4 chr5B.!!$R1 3392
5 TraesCS5A01G264400 chr6A 15762524 15763176 652 False 843.000000 843 90.199000 1 644 1 chr6A.!!$F1 643
6 TraesCS5A01G264400 chr6A 498945854 498946501 647 False 737.000000 737 87.443000 1 643 1 chr6A.!!$F2 642
7 TraesCS5A01G264400 chr1A 26058130 26058783 653 True 789.000000 789 88.702000 1 644 1 chr1A.!!$R1 643
8 TraesCS5A01G264400 chr3D 586515033 586515629 596 True 756.000000 756 89.701000 1 593 1 chr3D.!!$R1 592
9 TraesCS5A01G264400 chr3D 26669823 26670472 649 False 730.000000 730 87.156000 1 644 1 chr3D.!!$F1 643
10 TraesCS5A01G264400 chr3D 502125571 502127180 1609 False 599.666667 736 88.595333 985 3129 3 chr3D.!!$F2 2144
11 TraesCS5A01G264400 chr2B 90502677 90503327 650 True 736.000000 736 87.270000 1 644 1 chr2B.!!$R1 643
12 TraesCS5A01G264400 chr3A 641558084 641559651 1567 False 590.333333 728 88.601000 1033 3129 3 chr3A.!!$F1 2096
13 TraesCS5A01G264400 chr7A 470892505 470893160 655 True 726.000000 726 86.910000 1 647 1 chr7A.!!$R1 646
14 TraesCS5A01G264400 chr3B 663408494 663409026 532 False 608.000000 608 87.242000 2597 3129 1 chr3B.!!$F4 532
15 TraesCS5A01G264400 chr3B 663335474 663336004 530 False 579.000000 579 86.304000 2597 3129 1 chr3B.!!$F2 532
16 TraesCS5A01G264400 chr3B 663364047 663364555 508 False 540.000000 540 85.798000 1033 1546 1 chr3B.!!$F3 513
17 TraesCS5A01G264400 chr3B 663291227 663291732 505 False 508.000000 508 84.766000 1035 1546 1 chr3B.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 697 0.110486 TTCAGGAAGAACAGGTGGGC 59.890 55.0 0.0 0.0 0.0 5.36 F
1680 1746 0.247460 TCCTTGCACGATGTCTGGAG 59.753 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2091 0.098376 GGCTGCAGAGAATTCAAGCG 59.902 55.0 20.43 6.32 31.22 4.68 R
3329 3686 0.324091 CCAAGCCAGGCAATCTCCTT 60.324 55.0 15.80 0.00 33.25 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.064654 GTGCTCCAATCTCGATTTGCC 59.935 52.381 3.36 0.00 0.00 4.52
195 196 2.093973 CCGAAGTTGATCACCAGCTACT 60.094 50.000 0.00 0.00 35.13 2.57
221 222 0.534412 CTGGACTGCCTACCTCAGTG 59.466 60.000 0.00 0.00 44.09 3.66
236 237 0.529833 CAGTGTGCGTCAGGAGATCT 59.470 55.000 0.00 0.00 0.00 2.75
281 282 4.906055 AGCAGGATCTGGTGGAGT 57.094 55.556 0.00 0.00 40.87 3.85
284 285 1.195115 GCAGGATCTGGTGGAGTACA 58.805 55.000 0.00 0.00 31.21 2.90
333 334 4.267690 GCTCGACGTGTGATGAAATATGAA 59.732 41.667 0.00 0.00 0.00 2.57
465 477 0.528901 CGAACCACGCCGAATATGGA 60.529 55.000 0.00 0.00 36.94 3.41
477 489 3.393800 CGAATATGGACCGATTCTTGCT 58.606 45.455 14.04 0.00 31.15 3.91
484 496 3.387699 TGGACCGATTCTTGCTCATATGA 59.612 43.478 5.07 5.07 0.00 2.15
488 500 4.588951 ACCGATTCTTGCTCATATGAGGTA 59.411 41.667 29.43 11.06 42.29 3.08
515 529 3.404899 TCGTCGAAAGTGGGCTAAAAAT 58.595 40.909 0.00 0.00 0.00 1.82
567 581 3.615509 GACGTCCAATCGCCCCCAA 62.616 63.158 3.51 0.00 0.00 4.12
593 607 1.460504 TTGTATCGTCTGCTCGTCCT 58.539 50.000 0.00 0.00 0.00 3.85
597 612 3.441222 TGTATCGTCTGCTCGTCCTTAAA 59.559 43.478 0.00 0.00 0.00 1.52
620 637 4.370364 GGCGATTTTTATGCCTTCTGAA 57.630 40.909 0.00 0.00 45.40 3.02
647 664 4.744795 AACGACTGGAGATGCTCTAAAT 57.255 40.909 0.00 0.00 0.00 1.40
648 665 5.854010 AACGACTGGAGATGCTCTAAATA 57.146 39.130 0.00 0.00 0.00 1.40
649 666 6.412362 AACGACTGGAGATGCTCTAAATAT 57.588 37.500 0.00 0.00 0.00 1.28
650 667 6.019779 ACGACTGGAGATGCTCTAAATATC 57.980 41.667 0.00 0.00 0.00 1.63
651 668 5.047660 ACGACTGGAGATGCTCTAAATATCC 60.048 44.000 0.00 0.00 36.21 2.59
652 669 5.623368 CGACTGGAGATGCTCTAAATATCCC 60.623 48.000 0.00 0.00 35.02 3.85
653 670 4.534103 ACTGGAGATGCTCTAAATATCCCC 59.466 45.833 0.00 0.00 35.02 4.81
654 671 3.515502 TGGAGATGCTCTAAATATCCCCG 59.484 47.826 0.00 0.00 35.02 5.73
655 672 3.526534 GAGATGCTCTAAATATCCCCGC 58.473 50.000 0.00 0.00 0.00 6.13
656 673 3.177228 AGATGCTCTAAATATCCCCGCT 58.823 45.455 0.00 0.00 0.00 5.52
657 674 3.584848 AGATGCTCTAAATATCCCCGCTT 59.415 43.478 0.00 0.00 0.00 4.68
658 675 3.402628 TGCTCTAAATATCCCCGCTTC 57.597 47.619 0.00 0.00 0.00 3.86
659 676 2.703536 TGCTCTAAATATCCCCGCTTCA 59.296 45.455 0.00 0.00 0.00 3.02
660 677 3.135712 TGCTCTAAATATCCCCGCTTCAA 59.864 43.478 0.00 0.00 0.00 2.69
661 678 4.202461 TGCTCTAAATATCCCCGCTTCAAT 60.202 41.667 0.00 0.00 0.00 2.57
662 679 4.762251 GCTCTAAATATCCCCGCTTCAATT 59.238 41.667 0.00 0.00 0.00 2.32
663 680 5.106515 GCTCTAAATATCCCCGCTTCAATTC 60.107 44.000 0.00 0.00 0.00 2.17
664 681 5.935945 TCTAAATATCCCCGCTTCAATTCA 58.064 37.500 0.00 0.00 0.00 2.57
665 682 5.997746 TCTAAATATCCCCGCTTCAATTCAG 59.002 40.000 0.00 0.00 0.00 3.02
666 683 2.638480 TATCCCCGCTTCAATTCAGG 57.362 50.000 0.00 0.00 0.00 3.86
667 684 0.918983 ATCCCCGCTTCAATTCAGGA 59.081 50.000 0.00 0.00 0.00 3.86
668 685 0.695924 TCCCCGCTTCAATTCAGGAA 59.304 50.000 0.00 0.00 0.00 3.36
669 686 1.098050 CCCCGCTTCAATTCAGGAAG 58.902 55.000 0.00 0.00 43.59 3.46
670 687 1.340017 CCCCGCTTCAATTCAGGAAGA 60.340 52.381 7.92 0.00 43.46 2.87
671 688 2.436417 CCCGCTTCAATTCAGGAAGAA 58.564 47.619 7.92 0.00 43.46 2.52
672 689 2.162408 CCCGCTTCAATTCAGGAAGAAC 59.838 50.000 7.92 0.00 43.46 3.01
673 690 2.813754 CCGCTTCAATTCAGGAAGAACA 59.186 45.455 7.92 0.00 43.46 3.18
674 691 3.120060 CCGCTTCAATTCAGGAAGAACAG 60.120 47.826 7.92 0.00 43.46 3.16
675 692 3.120060 CGCTTCAATTCAGGAAGAACAGG 60.120 47.826 7.92 0.00 43.46 4.00
676 693 3.823304 GCTTCAATTCAGGAAGAACAGGT 59.177 43.478 7.92 0.00 43.46 4.00
677 694 4.320788 GCTTCAATTCAGGAAGAACAGGTG 60.321 45.833 7.92 0.00 43.46 4.00
678 695 3.754965 TCAATTCAGGAAGAACAGGTGG 58.245 45.455 0.00 0.00 39.49 4.61
679 696 2.821969 CAATTCAGGAAGAACAGGTGGG 59.178 50.000 0.00 0.00 39.49 4.61
680 697 0.110486 TTCAGGAAGAACAGGTGGGC 59.890 55.000 0.00 0.00 0.00 5.36
681 698 1.059584 TCAGGAAGAACAGGTGGGCA 61.060 55.000 0.00 0.00 0.00 5.36
682 699 0.607489 CAGGAAGAACAGGTGGGCAG 60.607 60.000 0.00 0.00 0.00 4.85
683 700 0.768221 AGGAAGAACAGGTGGGCAGA 60.768 55.000 0.00 0.00 0.00 4.26
684 701 0.110486 GGAAGAACAGGTGGGCAGAA 59.890 55.000 0.00 0.00 0.00 3.02
685 702 1.478654 GGAAGAACAGGTGGGCAGAAA 60.479 52.381 0.00 0.00 0.00 2.52
686 703 1.609072 GAAGAACAGGTGGGCAGAAAC 59.391 52.381 0.00 0.00 0.00 2.78
687 704 0.846693 AGAACAGGTGGGCAGAAACT 59.153 50.000 0.00 0.00 0.00 2.66
688 705 2.054799 AGAACAGGTGGGCAGAAACTA 58.945 47.619 0.00 0.00 0.00 2.24
689 706 2.152016 GAACAGGTGGGCAGAAACTAC 58.848 52.381 0.00 0.00 0.00 2.73
690 707 1.435256 ACAGGTGGGCAGAAACTACT 58.565 50.000 0.00 0.00 0.00 2.57
691 708 2.616524 ACAGGTGGGCAGAAACTACTA 58.383 47.619 0.00 0.00 0.00 1.82
692 709 3.182152 ACAGGTGGGCAGAAACTACTAT 58.818 45.455 0.00 0.00 0.00 2.12
693 710 3.587506 ACAGGTGGGCAGAAACTACTATT 59.412 43.478 0.00 0.00 0.00 1.73
694 711 4.042934 ACAGGTGGGCAGAAACTACTATTT 59.957 41.667 0.00 0.00 0.00 1.40
695 712 4.636206 CAGGTGGGCAGAAACTACTATTTC 59.364 45.833 0.00 0.00 38.62 2.17
696 713 4.288626 AGGTGGGCAGAAACTACTATTTCA 59.711 41.667 1.47 0.00 40.43 2.69
697 714 5.007682 GGTGGGCAGAAACTACTATTTCAA 58.992 41.667 1.47 0.00 40.43 2.69
698 715 5.123979 GGTGGGCAGAAACTACTATTTCAAG 59.876 44.000 1.47 0.00 40.43 3.02
699 716 5.705905 GTGGGCAGAAACTACTATTTCAAGT 59.294 40.000 1.47 0.00 40.43 3.16
700 717 5.705441 TGGGCAGAAACTACTATTTCAAGTG 59.295 40.000 1.47 0.00 40.43 3.16
701 718 5.392057 GGGCAGAAACTACTATTTCAAGTGC 60.392 44.000 1.47 2.67 40.43 4.40
702 719 5.181245 GGCAGAAACTACTATTTCAAGTGCA 59.819 40.000 10.95 0.00 40.43 4.57
703 720 6.127897 GGCAGAAACTACTATTTCAAGTGCAT 60.128 38.462 10.95 0.00 40.43 3.96
704 721 7.308435 GCAGAAACTACTATTTCAAGTGCATT 58.692 34.615 0.00 0.00 40.43 3.56
705 722 7.809806 GCAGAAACTACTATTTCAAGTGCATTT 59.190 33.333 0.00 0.00 40.43 2.32
706 723 9.334693 CAGAAACTACTATTTCAAGTGCATTTC 57.665 33.333 0.00 0.00 40.43 2.17
707 724 9.066892 AGAAACTACTATTTCAAGTGCATTTCA 57.933 29.630 0.00 0.00 40.43 2.69
708 725 9.118236 GAAACTACTATTTCAAGTGCATTTCAC 57.882 33.333 0.00 0.00 40.52 3.18
727 744 9.033481 CATTTCACTCATTTAAGCAAGTCAAAA 57.967 29.630 0.00 0.00 0.00 2.44
736 753 1.334869 AGCAAGTCAAAAACAGCTCCG 59.665 47.619 0.00 0.00 37.01 4.63
737 754 1.333619 GCAAGTCAAAAACAGCTCCGA 59.666 47.619 0.00 0.00 0.00 4.55
738 755 2.030805 GCAAGTCAAAAACAGCTCCGAT 60.031 45.455 0.00 0.00 0.00 4.18
756 774 3.361644 CCGATTGATTCGCACAAAAACAG 59.638 43.478 0.00 0.00 46.71 3.16
780 798 1.227089 CCGACTCCAATCAGCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
793 814 1.181741 AGCTCCGAGTCACTCTGCAA 61.182 55.000 14.07 0.00 0.00 4.08
806 827 1.667724 CTCTGCAACAGCTTTATCCGG 59.332 52.381 0.00 0.00 0.00 5.14
974 999 2.028190 CACCATCGCTAGCTCGGG 59.972 66.667 13.93 12.95 0.00 5.14
1601 1651 4.037327 TCGCTCTGATCCAACTCATAGAAG 59.963 45.833 0.00 0.00 0.00 2.85
1612 1666 6.057533 CCAACTCATAGAAGATACATTGGCA 58.942 40.000 0.00 0.00 0.00 4.92
1619 1673 8.271458 TCATAGAAGATACATTGGCAAAACCTA 58.729 33.333 3.01 0.00 40.22 3.08
1666 1732 4.318332 TGCACTGACTTGTCTAATCCTTG 58.682 43.478 2.35 0.00 0.00 3.61
1668 1734 4.318332 CACTGACTTGTCTAATCCTTGCA 58.682 43.478 2.35 0.00 0.00 4.08
1669 1735 4.153117 CACTGACTTGTCTAATCCTTGCAC 59.847 45.833 2.35 0.00 0.00 4.57
1670 1736 3.325870 TGACTTGTCTAATCCTTGCACG 58.674 45.455 2.35 0.00 0.00 5.34
1671 1737 3.006430 TGACTTGTCTAATCCTTGCACGA 59.994 43.478 2.35 0.00 0.00 4.35
1672 1738 4.184629 GACTTGTCTAATCCTTGCACGAT 58.815 43.478 0.00 0.00 0.00 3.73
1673 1739 3.935203 ACTTGTCTAATCCTTGCACGATG 59.065 43.478 0.00 0.00 0.00 3.84
1674 1740 3.610040 TGTCTAATCCTTGCACGATGT 57.390 42.857 0.00 0.00 0.00 3.06
1675 1741 3.521560 TGTCTAATCCTTGCACGATGTC 58.478 45.455 0.00 0.00 0.00 3.06
1676 1742 3.195610 TGTCTAATCCTTGCACGATGTCT 59.804 43.478 0.00 0.00 0.00 3.41
1677 1743 3.553511 GTCTAATCCTTGCACGATGTCTG 59.446 47.826 0.00 0.00 0.00 3.51
1678 1744 1.742761 AATCCTTGCACGATGTCTGG 58.257 50.000 0.00 0.00 0.00 3.86
1680 1746 0.247460 TCCTTGCACGATGTCTGGAG 59.753 55.000 0.00 0.00 0.00 3.86
1684 1764 1.834188 TGCACGATGTCTGGAGTCTA 58.166 50.000 0.00 0.00 0.00 2.59
1759 1885 8.126074 TGCTGTTATTAGTTGTTACTTGTTGTG 58.874 33.333 0.00 0.00 35.78 3.33
1791 1917 7.598189 TCGAGACAGATCGATATTTAGGTAG 57.402 40.000 0.00 0.00 46.20 3.18
1792 1918 6.594547 TCGAGACAGATCGATATTTAGGTAGG 59.405 42.308 0.00 0.00 46.20 3.18
1794 1920 7.281324 CGAGACAGATCGATATTTAGGTAGGAT 59.719 40.741 0.00 0.00 45.56 3.24
1795 1921 8.887264 AGACAGATCGATATTTAGGTAGGATT 57.113 34.615 0.00 0.00 0.00 3.01
1796 1922 8.744652 AGACAGATCGATATTTAGGTAGGATTG 58.255 37.037 0.00 0.00 0.00 2.67
1797 1923 7.841956 ACAGATCGATATTTAGGTAGGATTGG 58.158 38.462 0.00 0.00 0.00 3.16
1799 1925 5.416271 TCGATATTTAGGTAGGATTGGGC 57.584 43.478 0.00 0.00 0.00 5.36
1800 1926 4.081862 TCGATATTTAGGTAGGATTGGGCG 60.082 45.833 0.00 0.00 0.00 6.13
1802 1928 5.395324 CGATATTTAGGTAGGATTGGGCGAT 60.395 44.000 0.00 0.00 0.00 4.58
1803 1929 6.183360 CGATATTTAGGTAGGATTGGGCGATA 60.183 42.308 0.00 0.00 0.00 2.92
1804 1930 7.471539 CGATATTTAGGTAGGATTGGGCGATAT 60.472 40.741 0.00 0.00 0.00 1.63
1805 1931 5.836024 TTTAGGTAGGATTGGGCGATATT 57.164 39.130 0.00 0.00 0.00 1.28
1860 2000 6.106673 TCAGTTGCTGTTATTAGCTCTTACC 58.893 40.000 0.00 0.00 44.01 2.85
1864 2004 5.661458 TGCTGTTATTAGCTCTTACCTGTC 58.339 41.667 0.00 0.00 44.01 3.51
1899 2040 6.673154 ACAGACTTAAACACACTTTGGTAC 57.327 37.500 0.00 0.00 0.00 3.34
1919 2060 8.378172 TGGTACAATCAGTGAACTAGAAAAAG 57.622 34.615 0.00 0.00 31.92 2.27
1924 2065 9.136323 ACAATCAGTGAACTAGAAAAAGGAAAT 57.864 29.630 0.00 0.00 0.00 2.17
1948 2091 9.673454 AATTTTCTTTCAACGGTTACTTGATAC 57.327 29.630 0.00 0.00 0.00 2.24
1954 2097 3.581024 ACGGTTACTTGATACGCTTGA 57.419 42.857 0.00 0.00 0.00 3.02
2059 2202 2.935849 CAATGACGGGATTGACATCGAA 59.064 45.455 3.23 0.00 35.65 3.71
2075 2218 3.870723 TCGAAGATTCAAACAACACGG 57.129 42.857 0.00 0.00 0.00 4.94
2305 2454 0.468226 TCCGTGATGGAGGTATTGCC 59.532 55.000 0.00 0.00 43.74 4.52
2333 2482 4.873817 TGCTTCCAATTGTCAATGAACTG 58.126 39.130 4.43 0.00 0.00 3.16
2454 2804 2.435805 CACTCCTAGCCCAAGCAATAGA 59.564 50.000 0.00 0.00 43.56 1.98
2463 2813 9.247861 CCTAGCCCAAGCAATAGAAATAATTAT 57.752 33.333 0.00 0.00 43.56 1.28
2467 2817 8.579863 GCCCAAGCAATAGAAATAATTATCAGT 58.420 33.333 0.00 0.00 39.53 3.41
2627 2977 7.068702 TGGAGATACATAATTTTGCAGGGAAT 58.931 34.615 0.00 0.00 0.00 3.01
2663 3013 5.988092 ACATTTTCAAACATCAAAATGCGG 58.012 33.333 14.21 0.00 46.91 5.69
2828 3178 2.184322 GCTGGATCGAAGCACGGA 59.816 61.111 12.75 0.00 40.52 4.69
2923 3273 0.103208 GACTACAGACCTGGATGCCG 59.897 60.000 0.00 0.00 34.19 5.69
3092 3442 4.781570 TCGTTCCACGATTGGCAA 57.218 50.000 0.68 0.68 46.73 4.52
3180 3530 4.876107 ACGATGAATAAGCCACGATTCTTT 59.124 37.500 0.00 0.00 33.92 2.52
3186 3536 0.593128 AGCCACGATTCTTTGTGTGC 59.407 50.000 0.00 0.00 35.74 4.57
3194 3544 5.791974 CACGATTCTTTGTGTGCTATCTTTG 59.208 40.000 0.00 0.00 33.24 2.77
3241 3598 4.053295 GCACACTTTGTTGATTTCTGCAT 58.947 39.130 0.00 0.00 0.00 3.96
3265 3622 4.045334 ACATGGGGTATTCTTTTGGGAAGA 59.955 41.667 0.00 0.00 0.00 2.87
3299 3656 2.601240 TCCAATCCCAAACAGCATGA 57.399 45.000 0.00 0.00 39.69 3.07
3338 3695 6.092396 GCTGTCTGCATATATGAAGGAGATTG 59.908 42.308 18.99 6.74 42.31 2.67
3359 3716 1.521450 CTGGCTTGGCTGTGTTCTGG 61.521 60.000 0.00 0.00 0.00 3.86
3389 3746 4.362932 TCAAGACTGTAGAGCTGATTCG 57.637 45.455 0.00 0.00 0.00 3.34
3419 3777 4.688879 CCGATTTGCACTTGTCAGTACTTA 59.311 41.667 0.00 0.00 0.00 2.24
3513 3875 5.806654 ATGGCTTGTGTTTTGTCCTATTT 57.193 34.783 0.00 0.00 0.00 1.40
3514 3876 5.606348 TGGCTTGTGTTTTGTCCTATTTT 57.394 34.783 0.00 0.00 0.00 1.82
3578 3940 4.346418 CCAGGTCAAGTAGATGGAGCTATT 59.654 45.833 0.00 0.00 37.29 1.73
3693 4058 8.627487 AACACATGTTGTACAATAGTTTTGTG 57.373 30.769 23.87 23.87 37.51 3.33
3694 4059 7.199766 ACACATGTTGTACAATAGTTTTGTGG 58.800 34.615 26.63 16.04 36.32 4.17
3695 4060 7.067615 ACACATGTTGTACAATAGTTTTGTGGA 59.932 33.333 26.63 0.00 36.32 4.02
3697 4062 8.134895 ACATGTTGTACAATAGTTTTGTGGAAG 58.865 33.333 12.26 0.00 34.11 3.46
3701 4066 9.744468 GTTGTACAATAGTTTTGTGGAAGAAAT 57.256 29.630 12.26 0.00 34.11 2.17
3722 4089 8.806146 AGAAATATGCCGGCTTTATTAAATCAT 58.194 29.630 29.70 13.59 0.00 2.45
3736 4103 9.773328 TTTATTAAATCATGACTCGCAAAAGAG 57.227 29.630 0.00 0.00 43.56 2.85
3761 4129 2.165845 CCGTAGTACCAAGGTGAAGAGG 59.834 54.545 1.07 0.00 0.00 3.69
3778 4146 2.432510 AGAGGCGACCAAAATCTAGGAG 59.567 50.000 0.00 0.00 0.00 3.69
3785 4153 6.486993 GGCGACCAAAATCTAGGAGATAATTT 59.513 38.462 0.00 0.00 32.89 1.82
3889 4257 6.526056 TTGGAGAGGGTAGAGCTATAGTAA 57.474 41.667 0.84 0.00 0.00 2.24
3892 4260 6.791466 TGGAGAGGGTAGAGCTATAGTAACTA 59.209 42.308 0.84 0.86 0.00 2.24
3907 4275 4.625028 AGTAACTAAGTGAACAACCCGAC 58.375 43.478 0.00 0.00 0.00 4.79
3928 4296 7.437267 CCCGACTAAATGTACTGTAGTAAATGG 59.563 40.741 0.00 0.98 29.32 3.16
3999 4369 6.829985 TCATTTGGAGAGGGAATTCTCATA 57.170 37.500 8.33 0.00 44.34 2.15
4023 4415 2.450609 TTTCGGCAGTCCTTAGTGAC 57.549 50.000 0.00 0.00 35.43 3.67
4069 4488 9.464714 AGAATAGTGACAATATTACTTGCTACG 57.535 33.333 8.07 0.00 0.00 3.51
4070 4489 8.589335 AATAGTGACAATATTACTTGCTACGG 57.411 34.615 6.37 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 222 1.098869 TCTCAGATCTCCTGACGCAC 58.901 55.000 0.00 0.00 46.38 5.34
236 237 1.126948 TGATGCACCTGTGGGTCTCA 61.127 55.000 0.00 0.00 45.41 3.27
281 282 1.699634 GCCCTTGAGCCTCCATATGTA 59.300 52.381 1.24 0.00 0.00 2.29
284 285 0.764369 TCGCCCTTGAGCCTCCATAT 60.764 55.000 0.00 0.00 0.00 1.78
465 477 3.389329 ACCTCATATGAGCAAGAATCGGT 59.611 43.478 24.81 13.29 40.75 4.69
477 489 9.406828 CTTTCGACGAATAAATACCTCATATGA 57.593 33.333 11.71 5.07 0.00 2.15
484 496 5.114081 CCCACTTTCGACGAATAAATACCT 58.886 41.667 11.71 0.00 0.00 3.08
488 500 3.606687 AGCCCACTTTCGACGAATAAAT 58.393 40.909 11.71 0.00 0.00 1.40
515 529 2.435938 GCGTCGAGATTGGCCCAA 60.436 61.111 0.00 0.00 0.00 4.12
584 598 1.079405 CGCCCTTTAAGGACGAGCA 60.079 57.895 14.40 0.00 37.67 4.26
590 604 4.098807 GGCATAAAAATCGCCCTTTAAGGA 59.901 41.667 13.36 0.00 37.67 3.36
615 630 0.250295 CCAGTCGTTTGCCCTTCAGA 60.250 55.000 0.00 0.00 0.00 3.27
619 635 0.693049 ATCTCCAGTCGTTTGCCCTT 59.307 50.000 0.00 0.00 0.00 3.95
620 637 0.036010 CATCTCCAGTCGTTTGCCCT 60.036 55.000 0.00 0.00 0.00 5.19
647 664 2.123589 TCCTGAATTGAAGCGGGGATA 58.876 47.619 0.00 0.00 0.00 2.59
648 665 0.918983 TCCTGAATTGAAGCGGGGAT 59.081 50.000 0.00 0.00 0.00 3.85
649 666 0.695924 TTCCTGAATTGAAGCGGGGA 59.304 50.000 0.00 0.00 0.00 4.81
650 667 1.098050 CTTCCTGAATTGAAGCGGGG 58.902 55.000 0.00 0.00 33.46 5.73
651 668 2.113860 TCTTCCTGAATTGAAGCGGG 57.886 50.000 0.00 0.00 39.24 6.13
652 669 2.813754 TGTTCTTCCTGAATTGAAGCGG 59.186 45.455 0.00 0.00 39.24 5.52
653 670 3.120060 CCTGTTCTTCCTGAATTGAAGCG 60.120 47.826 0.00 0.00 39.24 4.68
654 671 3.823304 ACCTGTTCTTCCTGAATTGAAGC 59.177 43.478 0.00 0.00 39.24 3.86
655 672 4.217118 CCACCTGTTCTTCCTGAATTGAAG 59.783 45.833 0.00 0.00 40.45 3.02
656 673 4.144297 CCACCTGTTCTTCCTGAATTGAA 58.856 43.478 0.00 0.00 36.99 2.69
657 674 3.498481 CCCACCTGTTCTTCCTGAATTGA 60.498 47.826 0.00 0.00 36.99 2.57
658 675 2.821969 CCCACCTGTTCTTCCTGAATTG 59.178 50.000 0.00 0.00 36.99 2.32
659 676 2.819348 GCCCACCTGTTCTTCCTGAATT 60.819 50.000 0.00 0.00 36.99 2.17
660 677 1.272147 GCCCACCTGTTCTTCCTGAAT 60.272 52.381 0.00 0.00 36.99 2.57
661 678 0.110486 GCCCACCTGTTCTTCCTGAA 59.890 55.000 0.00 0.00 0.00 3.02
662 679 1.059584 TGCCCACCTGTTCTTCCTGA 61.060 55.000 0.00 0.00 0.00 3.86
663 680 0.607489 CTGCCCACCTGTTCTTCCTG 60.607 60.000 0.00 0.00 0.00 3.86
664 681 0.768221 TCTGCCCACCTGTTCTTCCT 60.768 55.000 0.00 0.00 0.00 3.36
665 682 0.110486 TTCTGCCCACCTGTTCTTCC 59.890 55.000 0.00 0.00 0.00 3.46
666 683 1.609072 GTTTCTGCCCACCTGTTCTTC 59.391 52.381 0.00 0.00 0.00 2.87
667 684 1.215423 AGTTTCTGCCCACCTGTTCTT 59.785 47.619 0.00 0.00 0.00 2.52
668 685 0.846693 AGTTTCTGCCCACCTGTTCT 59.153 50.000 0.00 0.00 0.00 3.01
669 686 2.152016 GTAGTTTCTGCCCACCTGTTC 58.848 52.381 0.00 0.00 0.00 3.18
670 687 1.774856 AGTAGTTTCTGCCCACCTGTT 59.225 47.619 0.00 0.00 0.00 3.16
671 688 1.435256 AGTAGTTTCTGCCCACCTGT 58.565 50.000 0.00 0.00 0.00 4.00
672 689 3.914426 ATAGTAGTTTCTGCCCACCTG 57.086 47.619 0.00 0.00 0.00 4.00
673 690 4.288626 TGAAATAGTAGTTTCTGCCCACCT 59.711 41.667 0.00 0.00 38.58 4.00
674 691 4.585879 TGAAATAGTAGTTTCTGCCCACC 58.414 43.478 0.00 0.00 38.58 4.61
675 692 5.705905 ACTTGAAATAGTAGTTTCTGCCCAC 59.294 40.000 0.00 0.00 38.58 4.61
676 693 5.705441 CACTTGAAATAGTAGTTTCTGCCCA 59.295 40.000 0.00 0.00 38.58 5.36
677 694 5.392057 GCACTTGAAATAGTAGTTTCTGCCC 60.392 44.000 0.00 0.00 38.58 5.36
678 695 5.181245 TGCACTTGAAATAGTAGTTTCTGCC 59.819 40.000 8.57 0.00 36.63 4.85
679 696 6.241207 TGCACTTGAAATAGTAGTTTCTGC 57.759 37.500 0.00 0.00 38.58 4.26
680 697 9.334693 GAAATGCACTTGAAATAGTAGTTTCTG 57.665 33.333 0.00 0.00 38.58 3.02
681 698 9.066892 TGAAATGCACTTGAAATAGTAGTTTCT 57.933 29.630 0.00 0.00 38.58 2.52
682 699 9.118236 GTGAAATGCACTTGAAATAGTAGTTTC 57.882 33.333 0.00 0.00 44.27 2.78
699 716 6.088016 ACTTGCTTAAATGAGTGAAATGCA 57.912 33.333 0.00 0.00 0.00 3.96
700 717 6.151691 TGACTTGCTTAAATGAGTGAAATGC 58.848 36.000 0.00 0.00 0.00 3.56
701 718 8.578308 TTTGACTTGCTTAAATGAGTGAAATG 57.422 30.769 0.00 0.00 0.00 2.32
702 719 9.598517 TTTTTGACTTGCTTAAATGAGTGAAAT 57.401 25.926 0.00 0.00 28.26 2.17
703 720 8.868916 GTTTTTGACTTGCTTAAATGAGTGAAA 58.131 29.630 0.00 0.00 0.00 2.69
704 721 8.031864 TGTTTTTGACTTGCTTAAATGAGTGAA 58.968 29.630 0.00 0.00 0.00 3.18
705 722 7.542890 TGTTTTTGACTTGCTTAAATGAGTGA 58.457 30.769 0.00 0.00 0.00 3.41
706 723 7.515684 GCTGTTTTTGACTTGCTTAAATGAGTG 60.516 37.037 0.00 0.00 0.00 3.51
707 724 6.476706 GCTGTTTTTGACTTGCTTAAATGAGT 59.523 34.615 0.00 0.00 0.00 3.41
708 725 6.698766 AGCTGTTTTTGACTTGCTTAAATGAG 59.301 34.615 0.00 0.00 36.09 2.90
709 726 6.572519 AGCTGTTTTTGACTTGCTTAAATGA 58.427 32.000 0.00 0.00 36.09 2.57
710 727 6.074142 GGAGCTGTTTTTGACTTGCTTAAATG 60.074 38.462 0.00 0.00 38.30 2.32
711 728 5.985530 GGAGCTGTTTTTGACTTGCTTAAAT 59.014 36.000 0.00 0.00 38.30 1.40
712 729 5.348164 GGAGCTGTTTTTGACTTGCTTAAA 58.652 37.500 0.00 0.00 38.30 1.52
713 730 4.497340 CGGAGCTGTTTTTGACTTGCTTAA 60.497 41.667 0.00 0.00 38.30 1.85
714 731 3.003275 CGGAGCTGTTTTTGACTTGCTTA 59.997 43.478 0.00 0.00 38.30 3.09
715 732 2.223572 CGGAGCTGTTTTTGACTTGCTT 60.224 45.455 0.00 0.00 38.30 3.91
716 733 1.334869 CGGAGCTGTTTTTGACTTGCT 59.665 47.619 0.00 0.00 39.89 3.91
717 734 1.333619 TCGGAGCTGTTTTTGACTTGC 59.666 47.619 0.00 0.00 0.00 4.01
736 753 3.121778 GGCTGTTTTTGTGCGAATCAATC 59.878 43.478 0.00 0.00 0.00 2.67
737 754 3.059166 GGCTGTTTTTGTGCGAATCAAT 58.941 40.909 0.00 0.00 0.00 2.57
738 755 2.468831 GGCTGTTTTTGTGCGAATCAA 58.531 42.857 0.00 0.00 0.00 2.57
756 774 2.202892 GATTGGAGTCGGACCGGC 60.203 66.667 11.44 11.44 0.00 6.13
780 798 1.876322 AAGCTGTTGCAGAGTGACTC 58.124 50.000 3.98 3.98 42.74 3.36
793 814 0.252197 GGGTGACCGGATAAAGCTGT 59.748 55.000 9.46 0.00 43.64 4.40
1005 1030 4.423209 AGGAGGAGAGGGGGTGCC 62.423 72.222 0.00 0.00 0.00 5.01
1416 1465 1.728971 CTGACCATGACGTTCTTCTGC 59.271 52.381 0.00 0.00 0.00 4.26
1601 1651 7.067008 ACACTACATAGGTTTTGCCAATGTATC 59.933 37.037 0.00 0.00 40.61 2.24
1612 1666 8.413309 TGACTACACTACACTACATAGGTTTT 57.587 34.615 0.00 0.00 0.00 2.43
1619 1673 9.803315 CATTTACATGACTACACTACACTACAT 57.197 33.333 0.00 0.00 31.07 2.29
1622 1676 7.758076 GTGCATTTACATGACTACACTACACTA 59.242 37.037 0.00 0.00 31.07 2.74
1624 1678 6.590292 AGTGCATTTACATGACTACACTACAC 59.410 38.462 0.00 0.00 31.74 2.90
1666 1732 2.924290 GTTTAGACTCCAGACATCGTGC 59.076 50.000 0.00 0.00 0.00 5.34
1668 1734 4.705337 GAGTTTAGACTCCAGACATCGT 57.295 45.455 1.91 0.00 45.34 3.73
1707 1787 7.665559 AGGTGATGTTGAATGTGTGTACTTAAT 59.334 33.333 0.00 0.00 0.00 1.40
1759 1885 1.202200 CGATCTGTCTCGAGTGAACCC 60.202 57.143 13.13 0.00 41.12 4.11
1787 1913 5.161943 ACTAAATATCGCCCAATCCTACC 57.838 43.478 0.00 0.00 0.00 3.18
1788 1914 6.932947 ACTACTAAATATCGCCCAATCCTAC 58.067 40.000 0.00 0.00 0.00 3.18
1789 1915 7.549147 AACTACTAAATATCGCCCAATCCTA 57.451 36.000 0.00 0.00 0.00 2.94
1790 1916 6.435292 AACTACTAAATATCGCCCAATCCT 57.565 37.500 0.00 0.00 0.00 3.24
1791 1917 7.118825 GGTTAACTACTAAATATCGCCCAATCC 59.881 40.741 5.42 0.00 0.00 3.01
1792 1918 7.658575 TGGTTAACTACTAAATATCGCCCAATC 59.341 37.037 5.42 0.00 0.00 2.67
1794 1920 6.887013 TGGTTAACTACTAAATATCGCCCAA 58.113 36.000 5.42 0.00 0.00 4.12
1795 1921 6.482898 TGGTTAACTACTAAATATCGCCCA 57.517 37.500 5.42 0.00 0.00 5.36
1796 1922 6.988580 AGTTGGTTAACTACTAAATATCGCCC 59.011 38.462 5.42 0.00 45.07 6.13
1860 2000 5.843673 AGTCTGTAGTGGACATATGACAG 57.156 43.478 10.38 11.25 37.45 3.51
1864 2004 7.817478 TGTGTTTAAGTCTGTAGTGGACATATG 59.183 37.037 0.00 0.00 37.45 1.78
1899 2040 9.971922 AATTTCCTTTTTCTAGTTCACTGATTG 57.028 29.630 0.00 0.00 0.00 2.67
1919 2060 7.703197 TCAAGTAACCGTTGAAAGAAAATTTCC 59.297 33.333 1.57 0.00 30.89 3.13
1924 2065 7.346695 CGTATCAAGTAACCGTTGAAAGAAAA 58.653 34.615 0.00 0.00 37.46 2.29
1936 2077 6.535508 AGAGAATTCAAGCGTATCAAGTAACC 59.464 38.462 8.44 0.00 0.00 2.85
1948 2091 0.098376 GGCTGCAGAGAATTCAAGCG 59.902 55.000 20.43 6.32 31.22 4.68
2059 2202 4.024048 GTGATGACCGTGTTGTTTGAATCT 60.024 41.667 0.00 0.00 0.00 2.40
2075 2218 1.382522 ATGTGGCAATCGGTGATGAC 58.617 50.000 0.00 0.00 0.00 3.06
2333 2482 2.751166 ATGCCGCCTGATAGTATGAC 57.249 50.000 0.00 0.00 0.00 3.06
2434 2783 2.764269 TCTATTGCTTGGGCTAGGAGT 58.236 47.619 0.00 0.00 39.59 3.85
2454 2804 7.561356 AGCCCAAGCACTAACTGATAATTATTT 59.439 33.333 0.00 0.00 43.56 1.40
2463 2813 3.780804 TTAAGCCCAAGCACTAACTGA 57.219 42.857 0.00 0.00 43.56 3.41
2467 2817 5.538433 AGACAAATTTAAGCCCAAGCACTAA 59.462 36.000 0.00 0.00 43.56 2.24
2527 2877 8.946085 CAACATAGGATCACTGCTAAGTAAAAA 58.054 33.333 0.00 0.00 33.79 1.94
2627 2977 7.766283 TGTTTGAAAATGTCACATCACTAACA 58.234 30.769 11.48 11.48 35.39 2.41
2663 3013 5.244178 CCATGAAGGATGGTAGTACCTAGTC 59.756 48.000 20.07 14.22 46.20 2.59
2923 3273 2.485814 GTCTTGTGCTTCACCATCTTCC 59.514 50.000 0.00 0.00 32.73 3.46
3194 3544 8.659491 GCTGTTTTGAATTGGGATCTTTTATTC 58.341 33.333 0.00 0.00 0.00 1.75
3241 3598 5.254267 TCTTCCCAAAAGAATACCCCATGTA 59.746 40.000 0.00 0.00 0.00 2.29
3265 3622 9.635404 TTTGGGATTGGATCGTTTATTTATACT 57.365 29.630 0.00 0.00 0.00 2.12
3299 3656 3.937706 GCAGACAGCAGAAATGAGTACAT 59.062 43.478 0.00 0.00 44.79 2.29
3329 3686 0.324091 CCAAGCCAGGCAATCTCCTT 60.324 55.000 15.80 0.00 33.25 3.36
3389 3746 0.593128 AAGTGCAAATCGGCTCACAC 59.407 50.000 0.00 0.00 34.04 3.82
3419 3777 3.884037 AGGTGGAAGGTTCACTTGAAT 57.116 42.857 0.00 0.00 40.21 2.57
3525 3887 3.895998 AGGGGAGAAATGATTCTGAAGC 58.104 45.455 0.00 0.00 45.91 3.86
3528 3890 6.829985 TTGATAGGGGAGAAATGATTCTGA 57.170 37.500 0.00 0.00 45.91 3.27
3578 3940 5.185454 ACGCTCACATCTGAAAAATGGATA 58.815 37.500 0.00 0.00 0.00 2.59
3672 4037 8.349245 TCTTCCACAAAACTATTGTACAACATG 58.651 33.333 11.22 6.61 0.00 3.21
3673 4038 8.458573 TCTTCCACAAAACTATTGTACAACAT 57.541 30.769 11.22 0.00 0.00 2.71
3683 4048 6.183360 CCGGCATATTTCTTCCACAAAACTAT 60.183 38.462 0.00 0.00 0.00 2.12
3691 4056 1.680338 AGCCGGCATATTTCTTCCAC 58.320 50.000 31.54 0.00 0.00 4.02
3692 4057 2.435372 AAGCCGGCATATTTCTTCCA 57.565 45.000 31.54 0.00 0.00 3.53
3693 4058 5.453567 AATAAAGCCGGCATATTTCTTCC 57.546 39.130 31.54 0.00 0.00 3.46
3694 4059 9.129209 GATTTAATAAAGCCGGCATATTTCTTC 57.871 33.333 30.41 22.35 0.00 2.87
3695 4060 8.637986 TGATTTAATAAAGCCGGCATATTTCTT 58.362 29.630 30.41 21.75 0.00 2.52
3697 4062 8.863049 CATGATTTAATAAAGCCGGCATATTTC 58.137 33.333 30.41 24.11 0.00 2.17
3701 4066 6.714810 AGTCATGATTTAATAAAGCCGGCATA 59.285 34.615 31.54 21.53 0.00 3.14
3702 4067 5.536161 AGTCATGATTTAATAAAGCCGGCAT 59.464 36.000 31.54 15.82 0.00 4.40
3703 4068 4.887071 AGTCATGATTTAATAAAGCCGGCA 59.113 37.500 31.54 8.70 0.00 5.69
3722 4089 1.230635 GGCTGCTCTTTTGCGAGTCA 61.231 55.000 0.00 0.00 35.36 3.41
3736 4103 0.739813 CACCTTGGTACTACGGCTGC 60.740 60.000 1.29 0.00 0.00 5.25
3761 4129 7.497925 AAATTATCTCCTAGATTTTGGTCGC 57.502 36.000 0.00 0.00 36.20 5.19
3860 4228 5.262455 AGCTCTACCCTCTCCAAATTTTT 57.738 39.130 0.00 0.00 0.00 1.94
3861 4229 4.936685 AGCTCTACCCTCTCCAAATTTT 57.063 40.909 0.00 0.00 0.00 1.82
3862 4230 6.847036 ACTATAGCTCTACCCTCTCCAAATTT 59.153 38.462 0.00 0.00 0.00 1.82
3863 4231 6.386284 ACTATAGCTCTACCCTCTCCAAATT 58.614 40.000 0.00 0.00 0.00 1.82
3864 4232 5.971493 ACTATAGCTCTACCCTCTCCAAAT 58.029 41.667 0.00 0.00 0.00 2.32
3880 4248 6.474751 CGGGTTGTTCACTTAGTTACTATAGC 59.525 42.308 0.00 0.00 0.00 2.97
3889 4257 4.942761 TTAGTCGGGTTGTTCACTTAGT 57.057 40.909 0.00 0.00 0.00 2.24
3892 4260 4.457466 ACATTTAGTCGGGTTGTTCACTT 58.543 39.130 0.00 0.00 0.00 3.16
3907 4275 8.388103 GTGTGCCATTTACTACAGTACATTTAG 58.612 37.037 0.00 0.00 0.00 1.85
4040 4432 9.757227 AGCAAGTAATATTGTCACTATTCTCTC 57.243 33.333 0.00 0.00 32.56 3.20
4044 4436 8.700644 CCGTAGCAAGTAATATTGTCACTATTC 58.299 37.037 0.00 0.00 32.56 1.75
4053 4472 5.007332 GGTTGGACCGTAGCAAGTAATATTG 59.993 44.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.