Multiple sequence alignment - TraesCS5A01G264100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G264100 chr5A 100.000 3332 0 0 1 3332 476656946 476660277 0.000000e+00 6154.0
1 TraesCS5A01G264100 chr5A 85.391 1239 143 20 1176 2398 474817843 474816627 0.000000e+00 1251.0
2 TraesCS5A01G264100 chr5A 81.458 1262 192 26 1219 2456 474781717 474780474 0.000000e+00 996.0
3 TraesCS5A01G264100 chr5A 87.391 460 55 3 2449 2907 474769940 474769483 2.940000e-145 525.0
4 TraesCS5A01G264100 chr5A 83.122 474 63 10 2399 2862 474816544 474816078 1.850000e-112 416.0
5 TraesCS5A01G264100 chr5A 75.466 322 30 26 395 714 474821353 474821079 9.770000e-21 111.0
6 TraesCS5A01G264100 chr5A 80.469 128 24 1 1197 1324 477833849 477833723 2.740000e-16 97.1
7 TraesCS5A01G264100 chr5A 97.619 42 1 0 1031 1072 474818104 474818063 4.610000e-09 73.1
8 TraesCS5A01G264100 chr5D 92.019 2506 121 37 641 3080 375279963 375282455 0.000000e+00 3446.0
9 TraesCS5A01G264100 chr5D 83.655 1242 162 21 1176 2398 371787704 371786485 0.000000e+00 1131.0
10 TraesCS5A01G264100 chr5D 83.333 474 62 10 2399 2862 371786366 371785900 3.970000e-114 422.0
11 TraesCS5A01G264100 chr5D 80.529 529 61 15 53 575 375279468 375279960 5.250000e-98 368.0
12 TraesCS5A01G264100 chr5D 86.607 224 21 7 3079 3298 375282909 375283127 4.300000e-59 239.0
13 TraesCS5A01G264100 chr5D 97.619 42 1 0 1031 1072 371787967 371787926 4.610000e-09 73.1
14 TraesCS5A01G264100 chr5B 91.834 2192 103 36 1029 3154 448121786 448123967 0.000000e+00 2987.0
15 TraesCS5A01G264100 chr5B 83.454 1239 167 20 1176 2398 441639155 441637939 0.000000e+00 1118.0
16 TraesCS5A01G264100 chr5B 86.957 943 56 26 56 982 448120897 448121788 0.000000e+00 998.0
17 TraesCS5A01G264100 chr5B 82.489 474 66 10 2399 2862 441637856 441637390 1.860000e-107 399.0
18 TraesCS5A01G264100 chr5B 78.853 558 105 13 1562 2113 448275307 448274757 6.790000e-97 364.0
19 TraesCS5A01G264100 chr5B 97.619 42 1 0 1031 1072 441639418 441639377 4.610000e-09 73.1
20 TraesCS5A01G264100 chr7B 86.842 1710 185 22 1176 2862 92907407 92909099 0.000000e+00 1875.0
21 TraesCS5A01G264100 chr7B 97.297 37 1 0 395 431 92902472 92902508 2.780000e-06 63.9
22 TraesCS5A01G264100 chr1B 73.154 745 152 37 2134 2852 594010372 594009650 1.200000e-54 224.0
23 TraesCS5A01G264100 chr1A 72.419 620 123 36 2251 2852 535037329 535036740 1.600000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G264100 chr5A 476656946 476660277 3331 False 6154.000000 6154 100.000000 1 3332 1 chr5A.!!$F1 3331
1 TraesCS5A01G264100 chr5A 474780474 474781717 1243 True 996.000000 996 81.458000 1219 2456 1 chr5A.!!$R2 1237
2 TraesCS5A01G264100 chr5A 474816078 474821353 5275 True 462.775000 1251 85.399500 395 2862 4 chr5A.!!$R4 2467
3 TraesCS5A01G264100 chr5D 375279468 375283127 3659 False 1351.000000 3446 86.385000 53 3298 3 chr5D.!!$F1 3245
4 TraesCS5A01G264100 chr5D 371785900 371787967 2067 True 542.033333 1131 88.202333 1031 2862 3 chr5D.!!$R1 1831
5 TraesCS5A01G264100 chr5B 448120897 448123967 3070 False 1992.500000 2987 89.395500 56 3154 2 chr5B.!!$F1 3098
6 TraesCS5A01G264100 chr5B 441637390 441639418 2028 True 530.033333 1118 87.854000 1031 2862 3 chr5B.!!$R2 1831
7 TraesCS5A01G264100 chr5B 448274757 448275307 550 True 364.000000 364 78.853000 1562 2113 1 chr5B.!!$R1 551
8 TraesCS5A01G264100 chr7B 92907407 92909099 1692 False 1875.000000 1875 86.842000 1176 2862 1 chr7B.!!$F2 1686
9 TraesCS5A01G264100 chr1B 594009650 594010372 722 True 224.000000 224 73.154000 2134 2852 1 chr1B.!!$R1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.040514 CAGCAGCTATCTCGTCCTCG 60.041 60.0 0.0 0.0 38.55 4.63 F
153 154 0.040781 GCAGCTATCTCGTCCTCGTC 60.041 60.0 0.0 0.0 38.33 4.20 F
155 156 0.180642 AGCTATCTCGTCCTCGTCCA 59.819 55.0 0.0 0.0 38.33 4.02 F
156 157 0.308376 GCTATCTCGTCCTCGTCCAC 59.692 60.0 0.0 0.0 38.33 4.02 F
615 650 0.470080 CCGAGGAGGATTCCCAGCTA 60.470 60.0 0.0 0.0 45.24 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1658 4574 0.381801 AACAGCCTTGTCAAGCAACG 59.618 50.000 7.09 0.00 36.23 4.10 R
1894 4811 1.968493 ACCGGAAGTTTCTCTACAGCA 59.032 47.619 9.46 0.00 0.00 4.41 R
1897 4814 2.967201 TCCAACCGGAAGTTTCTCTACA 59.033 45.455 9.46 0.00 38.83 2.74 R
2150 5079 4.765273 ACATATTCAATGGCACGACTACA 58.235 39.130 0.00 0.00 0.00 2.74 R
2528 5607 0.326904 TGGAGATGTCCTGGCATCCT 60.327 55.000 20.28 12.01 44.58 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.732896 AAAGTATCCATCCAAGACTATCGT 57.267 37.500 0.00 0.00 0.00 3.73
32 33 5.968528 AGTATCCATCCAAGACTATCGTC 57.031 43.478 0.00 0.00 40.54 4.20
48 49 8.516811 GACTATCGTCTAGTTTGTTTTCTCAA 57.483 34.615 2.73 0.00 37.19 3.02
49 50 8.295569 ACTATCGTCTAGTTTGTTTTCTCAAC 57.704 34.615 0.00 0.00 0.00 3.18
50 51 5.630896 TCGTCTAGTTTGTTTTCTCAACG 57.369 39.130 0.00 0.00 0.00 4.10
51 52 4.505191 TCGTCTAGTTTGTTTTCTCAACGG 59.495 41.667 0.00 0.00 0.00 4.44
52 53 4.318546 CGTCTAGTTTGTTTTCTCAACGGG 60.319 45.833 0.00 0.00 0.00 5.28
53 54 4.812626 GTCTAGTTTGTTTTCTCAACGGGA 59.187 41.667 0.00 0.00 0.00 5.14
54 55 5.295045 GTCTAGTTTGTTTTCTCAACGGGAA 59.705 40.000 0.00 0.00 0.00 3.97
78 79 4.066139 GGCTCCCATTGGGCTGGT 62.066 66.667 17.60 0.00 43.94 4.00
140 141 2.181777 CCGCGAAGTCAGCAGCTA 59.818 61.111 8.23 0.00 34.19 3.32
141 142 1.227089 CCGCGAAGTCAGCAGCTAT 60.227 57.895 8.23 0.00 34.19 2.97
142 143 1.211818 CCGCGAAGTCAGCAGCTATC 61.212 60.000 8.23 0.00 34.19 2.08
143 144 0.248825 CGCGAAGTCAGCAGCTATCT 60.249 55.000 0.00 0.00 34.19 1.98
144 145 1.486439 GCGAAGTCAGCAGCTATCTC 58.514 55.000 0.00 0.00 34.19 2.75
145 146 1.752753 CGAAGTCAGCAGCTATCTCG 58.247 55.000 0.00 0.00 0.00 4.04
146 147 1.064803 CGAAGTCAGCAGCTATCTCGT 59.935 52.381 0.00 0.00 0.00 4.18
147 148 2.726633 GAAGTCAGCAGCTATCTCGTC 58.273 52.381 0.00 0.00 0.00 4.20
148 149 1.028905 AGTCAGCAGCTATCTCGTCC 58.971 55.000 0.00 0.00 0.00 4.79
149 150 1.028905 GTCAGCAGCTATCTCGTCCT 58.971 55.000 0.00 0.00 0.00 3.85
150 151 1.001815 GTCAGCAGCTATCTCGTCCTC 60.002 57.143 0.00 0.00 0.00 3.71
151 152 0.040514 CAGCAGCTATCTCGTCCTCG 60.041 60.000 0.00 0.00 38.55 4.63
152 153 0.464735 AGCAGCTATCTCGTCCTCGT 60.465 55.000 0.00 0.00 38.33 4.18
153 154 0.040781 GCAGCTATCTCGTCCTCGTC 60.041 60.000 0.00 0.00 38.33 4.20
154 155 0.589223 CAGCTATCTCGTCCTCGTCC 59.411 60.000 0.00 0.00 38.33 4.79
155 156 0.180642 AGCTATCTCGTCCTCGTCCA 59.819 55.000 0.00 0.00 38.33 4.02
156 157 0.308376 GCTATCTCGTCCTCGTCCAC 59.692 60.000 0.00 0.00 38.33 4.02
157 158 0.582482 CTATCTCGTCCTCGTCCACG 59.418 60.000 0.00 0.00 41.45 4.94
158 159 1.434622 TATCTCGTCCTCGTCCACGC 61.435 60.000 0.00 0.00 39.60 5.34
159 160 4.477975 CTCGTCCTCGTCCACGCC 62.478 72.222 0.00 0.00 39.60 5.68
161 162 4.129737 CGTCCTCGTCCACGCCAT 62.130 66.667 0.00 0.00 39.60 4.40
162 163 2.264794 GTCCTCGTCCACGCCATT 59.735 61.111 0.00 0.00 39.60 3.16
179 180 1.883275 CATTGGGTTTGGTTGACGCTA 59.117 47.619 0.00 0.00 0.00 4.26
276 299 0.883814 CATTGCTGGCCTCGATCTCC 60.884 60.000 3.32 0.00 0.00 3.71
279 302 4.292178 CTGGCCTCGATCTCCCGC 62.292 72.222 3.32 0.00 0.00 6.13
321 344 1.173913 GAGGTGAAATTCCAACCCCG 58.826 55.000 0.00 0.00 0.00 5.73
322 345 0.481128 AGGTGAAATTCCAACCCCGT 59.519 50.000 0.00 0.00 0.00 5.28
323 346 0.601057 GGTGAAATTCCAACCCCGTG 59.399 55.000 0.00 0.00 0.00 4.94
354 380 2.446802 GGATCTCGCCCCTCCCTT 60.447 66.667 0.00 0.00 0.00 3.95
356 382 2.446802 ATCTCGCCCCTCCCTTCC 60.447 66.667 0.00 0.00 0.00 3.46
357 383 4.798682 TCTCGCCCCTCCCTTCCC 62.799 72.222 0.00 0.00 0.00 3.97
358 384 4.806339 CTCGCCCCTCCCTTCCCT 62.806 72.222 0.00 0.00 0.00 4.20
359 385 4.798682 TCGCCCCTCCCTTCCCTC 62.799 72.222 0.00 0.00 0.00 4.30
360 386 4.806339 CGCCCCTCCCTTCCCTCT 62.806 72.222 0.00 0.00 0.00 3.69
389 424 1.799258 CTTTGCGCCCTGCTGTTTCT 61.799 55.000 4.18 0.00 46.63 2.52
391 426 1.795170 TTGCGCCCTGCTGTTTCTTC 61.795 55.000 4.18 0.00 46.63 2.87
392 427 2.982744 GCGCCCTGCTGTTTCTTCC 61.983 63.158 0.00 0.00 41.73 3.46
432 467 2.092321 TCATGACCATGGATGATGTGCA 60.092 45.455 21.47 3.48 39.24 4.57
433 468 2.740506 TGACCATGGATGATGTGCAT 57.259 45.000 21.47 0.00 39.77 3.96
452 487 3.239449 CATGTGCCCTATCCTAGGTACA 58.761 50.000 9.08 2.45 44.73 2.90
465 500 3.119101 CCTAGGTACAATGTCGACTGCTT 60.119 47.826 17.92 5.00 0.00 3.91
466 501 2.960819 AGGTACAATGTCGACTGCTTC 58.039 47.619 17.92 3.20 0.00 3.86
467 502 2.299013 AGGTACAATGTCGACTGCTTCA 59.701 45.455 17.92 0.00 0.00 3.02
468 503 3.055819 AGGTACAATGTCGACTGCTTCAT 60.056 43.478 17.92 0.00 0.00 2.57
469 504 3.307242 GGTACAATGTCGACTGCTTCATC 59.693 47.826 17.92 0.94 0.00 2.92
470 505 3.044235 ACAATGTCGACTGCTTCATCA 57.956 42.857 17.92 0.00 0.00 3.07
519 554 1.069823 GTGAGCATGACGATGATCCCT 59.930 52.381 0.00 0.00 43.23 4.20
521 556 2.965147 TGAGCATGACGATGATCCCTAA 59.035 45.455 0.00 0.00 43.23 2.69
553 588 1.257415 CACGCGATTGAGATCTTCAGC 59.743 52.381 15.93 0.00 37.07 4.26
614 649 1.764054 CCGAGGAGGATTCCCAGCT 60.764 63.158 0.00 0.00 45.24 4.24
615 650 0.470080 CCGAGGAGGATTCCCAGCTA 60.470 60.000 0.00 0.00 45.24 3.32
616 651 0.965439 CGAGGAGGATTCCCAGCTAG 59.035 60.000 0.00 0.00 45.24 3.42
617 652 0.684535 GAGGAGGATTCCCAGCTAGC 59.315 60.000 6.62 6.62 45.24 3.42
618 653 0.766288 AGGAGGATTCCCAGCTAGCC 60.766 60.000 12.13 0.00 45.24 3.93
619 654 1.369321 GAGGATTCCCAGCTAGCCG 59.631 63.158 12.13 0.00 33.88 5.52
620 655 1.075226 AGGATTCCCAGCTAGCCGA 60.075 57.895 12.13 1.44 33.88 5.54
621 656 0.472734 AGGATTCCCAGCTAGCCGAT 60.473 55.000 12.13 0.00 33.88 4.18
658 693 2.040278 ACTGCCAGCCACTCTATTTCAA 59.960 45.455 0.00 0.00 0.00 2.69
659 694 3.285484 CTGCCAGCCACTCTATTTCAAT 58.715 45.455 0.00 0.00 0.00 2.57
661 696 5.052693 TGCCAGCCACTCTATTTCAATAT 57.947 39.130 0.00 0.00 0.00 1.28
678 713 8.641499 TTTCAATATTTTGTTGGAACTGTGAC 57.359 30.769 0.00 0.00 34.32 3.67
793 3384 2.038557 TCTGCTTAACTGAGGTGGTTCC 59.961 50.000 0.00 0.00 0.00 3.62
828 3419 2.472488 CACGAAATCAAAGCCAACAAGC 59.528 45.455 0.00 0.00 0.00 4.01
845 3436 3.254166 ACAAGCTGAGCAATTTCGATTGT 59.746 39.130 7.39 2.71 34.21 2.71
855 3446 7.043391 TGAGCAATTTCGATTGTATCTTAGTCG 60.043 37.037 1.06 0.00 34.21 4.18
857 3448 6.355638 CAATTTCGATTGTATCTTAGTCGCC 58.644 40.000 0.00 0.00 32.74 5.54
862 3453 4.608951 GATTGTATCTTAGTCGCCGAAGT 58.391 43.478 0.00 0.00 0.00 3.01
868 3462 6.529125 TGTATCTTAGTCGCCGAAGTAAAAAG 59.471 38.462 0.00 0.00 0.00 2.27
869 3463 4.240096 TCTTAGTCGCCGAAGTAAAAAGG 58.760 43.478 0.00 0.00 0.00 3.11
879 3473 5.457799 GCCGAAGTAAAAAGGAAAACAAGAC 59.542 40.000 0.00 0.00 0.00 3.01
880 3474 5.679792 CCGAAGTAAAAAGGAAAACAAGACG 59.320 40.000 0.00 0.00 0.00 4.18
980 3739 0.955905 GTTGTTACCGCAACCATGGT 59.044 50.000 13.00 13.00 41.93 3.55
983 3742 1.202830 TGTTACCGCAACCATGGTTCT 60.203 47.619 27.56 12.23 39.70 3.01
987 3746 1.210931 CGCAACCATGGTTCTGCAG 59.789 57.895 31.21 22.60 36.00 4.41
1013 3772 4.993029 AGTAGTAGATGGTGTGCTTCTC 57.007 45.455 0.00 0.00 0.00 2.87
1020 3779 1.896220 TGGTGTGCTTCTCCACATTC 58.104 50.000 0.00 0.00 46.31 2.67
1178 4094 5.253330 TGGTTAAAGGATCCACTTGCTTAG 58.747 41.667 15.82 0.00 0.00 2.18
1241 4157 1.002868 CTGTCCCTTCTGCCACTGG 60.003 63.158 0.00 0.00 0.00 4.00
1336 4252 1.813753 TATGGAAACGCTGCGCCTC 60.814 57.895 23.51 17.82 0.00 4.70
1508 4424 4.253685 GTGGCTTGAGATTGCTGTTACTA 58.746 43.478 0.00 0.00 0.00 1.82
1650 4566 4.096003 CGCCTTCCATCCCACGGT 62.096 66.667 0.00 0.00 0.00 4.83
1658 4574 3.782443 ATCCCACGGTCGGGCTTC 61.782 66.667 9.88 0.00 46.92 3.86
1700 4616 0.602638 GTTGGAGGTGCACATCACGA 60.603 55.000 30.34 17.46 46.56 4.35
1766 4683 6.146347 GGAAGAGTTGTGTCTCAATAGTTGTC 59.854 42.308 0.00 0.00 38.38 3.18
1894 4811 1.612950 TGCTTTGTTCGCATTGATGGT 59.387 42.857 0.00 0.00 31.40 3.55
1897 4814 1.246649 TTGTTCGCATTGATGGTGCT 58.753 45.000 0.00 0.00 40.37 4.40
2137 5066 7.239763 TGTCAGAGACAGGTATTGTTTCATA 57.760 36.000 0.00 0.00 41.98 2.15
2138 5067 7.851228 TGTCAGAGACAGGTATTGTTTCATAT 58.149 34.615 0.00 0.00 41.98 1.78
2139 5068 8.977412 TGTCAGAGACAGGTATTGTTTCATATA 58.023 33.333 0.00 0.00 41.98 0.86
2226 5175 9.851686 TTAACCAAGATCTATATGCAGATGTTT 57.148 29.630 3.54 0.00 36.64 2.83
2242 5191 9.237187 TGCAGATGTTTAATACACCAATCTTAA 57.763 29.630 0.00 0.00 40.19 1.85
2273 5222 1.627834 CCTCTTCCTGAAGAACCTGCT 59.372 52.381 10.57 0.00 45.75 4.24
2288 5237 5.298777 AGAACCTGCTGATTGATCTTAATGC 59.701 40.000 0.00 0.00 0.00 3.56
2289 5238 4.529897 ACCTGCTGATTGATCTTAATGCA 58.470 39.130 0.00 0.00 0.00 3.96
2292 5241 5.473846 CCTGCTGATTGATCTTAATGCAGAT 59.526 40.000 22.38 0.00 46.40 2.90
2498 5577 4.090642 CACAGACTCGAGTAAAGCATGAAC 59.909 45.833 20.09 1.42 0.00 3.18
2513 5592 5.446860 AGCATGAACTGATTTCTGATGGAT 58.553 37.500 0.00 0.00 34.97 3.41
2516 5595 6.261603 GCATGAACTGATTTCTGATGGATACA 59.738 38.462 0.00 0.00 43.16 2.29
2632 5711 3.058432 CCTGCCATATTCTTGAGAATGCG 60.058 47.826 14.82 6.81 43.90 4.73
2636 5715 4.319333 GCCATATTCTTGAGAATGCGACTG 60.319 45.833 14.82 6.04 43.90 3.51
2653 5732 2.886124 GCACTCGAGCGCCTTACC 60.886 66.667 14.53 0.00 0.00 2.85
2880 5962 4.536295 AATCCAAGGGGTTTAGGTATGG 57.464 45.455 0.00 0.00 34.93 2.74
2881 5963 2.937442 TCCAAGGGGTTTAGGTATGGT 58.063 47.619 0.00 0.00 34.93 3.55
2882 5964 4.091422 TCCAAGGGGTTTAGGTATGGTA 57.909 45.455 0.00 0.00 34.93 3.25
2944 6042 1.387539 GAGCTTCCCCTTGAGAATGC 58.612 55.000 0.00 0.00 0.00 3.56
2945 6043 0.998145 AGCTTCCCCTTGAGAATGCT 59.002 50.000 0.00 0.00 0.00 3.79
2946 6044 1.357079 AGCTTCCCCTTGAGAATGCTT 59.643 47.619 0.00 0.00 29.35 3.91
2947 6045 2.174360 GCTTCCCCTTGAGAATGCTTT 58.826 47.619 0.00 0.00 0.00 3.51
2948 6046 2.094338 GCTTCCCCTTGAGAATGCTTTG 60.094 50.000 0.00 0.00 0.00 2.77
3023 6142 4.278419 CCGGTCTCCTTTTCAAGAACAAAT 59.722 41.667 0.00 0.00 0.00 2.32
3024 6143 5.215160 CGGTCTCCTTTTCAAGAACAAATG 58.785 41.667 0.00 0.00 0.00 2.32
3030 6149 6.068010 TCCTTTTCAAGAACAAATGAGGCTA 58.932 36.000 0.00 0.00 0.00 3.93
3123 6717 2.548875 TGGAAGCATGTTTTTGTGCAC 58.451 42.857 10.75 10.75 43.63 4.57
3171 6767 8.911662 CAAGACCAACCGTTTTATCATAAAAAG 58.088 33.333 4.06 6.50 0.00 2.27
3172 6768 8.398878 AGACCAACCGTTTTATCATAAAAAGA 57.601 30.769 15.14 0.00 0.00 2.52
3173 6769 8.294577 AGACCAACCGTTTTATCATAAAAAGAC 58.705 33.333 15.14 0.00 0.00 3.01
3174 6770 7.942990 ACCAACCGTTTTATCATAAAAAGACA 58.057 30.769 15.14 0.00 0.00 3.41
3180 6776 9.801873 CCGTTTTATCATAAAAAGACATGGATT 57.198 29.630 15.14 0.00 0.00 3.01
3190 6786 9.927668 ATAAAAAGACATGGATTGAACGAAATT 57.072 25.926 0.00 0.00 0.00 1.82
3231 6827 5.841783 AGGAAAGTTAGTTCTCCTCAAGTCT 59.158 40.000 0.00 0.00 32.68 3.24
3232 6828 7.011382 AGGAAAGTTAGTTCTCCTCAAGTCTA 58.989 38.462 0.00 0.00 32.68 2.59
3268 6865 8.099537 AGCTATTTTACATATGCTATGTCTGCT 58.900 33.333 1.58 1.85 33.76 4.24
3288 6885 6.092259 TCTGCTTAATCCTTAAAGAAACTCGC 59.908 38.462 0.00 0.00 0.00 5.03
3291 6888 7.081976 GCTTAATCCTTAAAGAAACTCGCAAA 58.918 34.615 0.00 0.00 0.00 3.68
3293 6890 5.629079 ATCCTTAAAGAAACTCGCAAAGG 57.371 39.130 0.00 0.00 34.60 3.11
3295 6892 5.127491 TCCTTAAAGAAACTCGCAAAGGAA 58.873 37.500 0.00 0.00 38.39 3.36
3296 6893 5.768164 TCCTTAAAGAAACTCGCAAAGGAAT 59.232 36.000 0.00 0.00 38.39 3.01
3297 6894 6.072673 TCCTTAAAGAAACTCGCAAAGGAATC 60.073 38.462 0.00 0.00 38.39 2.52
3298 6895 6.072452 CCTTAAAGAAACTCGCAAAGGAATCT 60.072 38.462 0.00 0.00 35.14 2.40
3299 6896 5.774498 AAAGAAACTCGCAAAGGAATCTT 57.226 34.783 0.00 0.00 34.07 2.40
3300 6897 5.774498 AAGAAACTCGCAAAGGAATCTTT 57.226 34.783 0.00 0.00 43.41 2.52
3310 6907 4.402616 AAAGGAATCTTTGATGGGGTGA 57.597 40.909 0.00 0.00 41.28 4.02
3311 6908 3.372440 AGGAATCTTTGATGGGGTGAC 57.628 47.619 0.00 0.00 0.00 3.67
3312 6909 2.017049 GGAATCTTTGATGGGGTGACG 58.983 52.381 0.00 0.00 0.00 4.35
3313 6910 2.355716 GGAATCTTTGATGGGGTGACGA 60.356 50.000 0.00 0.00 0.00 4.20
3314 6911 2.698855 ATCTTTGATGGGGTGACGAG 57.301 50.000 0.00 0.00 0.00 4.18
3315 6912 0.613260 TCTTTGATGGGGTGACGAGG 59.387 55.000 0.00 0.00 0.00 4.63
3316 6913 0.613260 CTTTGATGGGGTGACGAGGA 59.387 55.000 0.00 0.00 0.00 3.71
3317 6914 0.323629 TTTGATGGGGTGACGAGGAC 59.676 55.000 0.00 0.00 0.00 3.85
3318 6915 0.834261 TTGATGGGGTGACGAGGACA 60.834 55.000 0.00 0.00 0.00 4.02
3319 6916 0.834261 TGATGGGGTGACGAGGACAA 60.834 55.000 0.00 0.00 0.00 3.18
3320 6917 0.323629 GATGGGGTGACGAGGACAAA 59.676 55.000 0.00 0.00 0.00 2.83
3321 6918 0.036306 ATGGGGTGACGAGGACAAAC 59.964 55.000 0.00 0.00 0.00 2.93
3322 6919 1.338890 TGGGGTGACGAGGACAAACA 61.339 55.000 0.00 0.00 0.00 2.83
3323 6920 0.179040 GGGGTGACGAGGACAAACAA 60.179 55.000 0.00 0.00 0.00 2.83
3324 6921 1.670791 GGGTGACGAGGACAAACAAA 58.329 50.000 0.00 0.00 0.00 2.83
3325 6922 2.018515 GGGTGACGAGGACAAACAAAA 58.981 47.619 0.00 0.00 0.00 2.44
3326 6923 2.032924 GGGTGACGAGGACAAACAAAAG 59.967 50.000 0.00 0.00 0.00 2.27
3327 6924 2.940410 GGTGACGAGGACAAACAAAAGA 59.060 45.455 0.00 0.00 0.00 2.52
3328 6925 3.002348 GGTGACGAGGACAAACAAAAGAG 59.998 47.826 0.00 0.00 0.00 2.85
3329 6926 3.002348 GTGACGAGGACAAACAAAAGAGG 59.998 47.826 0.00 0.00 0.00 3.69
3330 6927 3.118555 TGACGAGGACAAACAAAAGAGGA 60.119 43.478 0.00 0.00 0.00 3.71
3331 6928 3.203716 ACGAGGACAAACAAAAGAGGAC 58.796 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.410513 CCGTTGAGAAAACAAACTAGACGATAG 60.411 40.741 0.00 0.00 46.19 2.08
26 27 6.364165 CCGTTGAGAAAACAAACTAGACGATA 59.636 38.462 0.00 0.00 31.24 2.92
27 28 5.176958 CCGTTGAGAAAACAAACTAGACGAT 59.823 40.000 0.00 0.00 31.24 3.73
28 29 4.505191 CCGTTGAGAAAACAAACTAGACGA 59.495 41.667 0.00 0.00 31.24 4.20
29 30 4.318546 CCCGTTGAGAAAACAAACTAGACG 60.319 45.833 0.00 0.00 0.00 4.18
30 31 4.812626 TCCCGTTGAGAAAACAAACTAGAC 59.187 41.667 0.00 0.00 0.00 2.59
31 32 5.026038 TCCCGTTGAGAAAACAAACTAGA 57.974 39.130 0.00 0.00 0.00 2.43
32 33 5.744666 TTCCCGTTGAGAAAACAAACTAG 57.255 39.130 0.00 0.00 0.00 2.57
33 34 6.428771 CCTATTCCCGTTGAGAAAACAAACTA 59.571 38.462 0.00 0.00 0.00 2.24
34 35 5.240844 CCTATTCCCGTTGAGAAAACAAACT 59.759 40.000 0.00 0.00 0.00 2.66
35 36 5.239963 TCCTATTCCCGTTGAGAAAACAAAC 59.760 40.000 0.00 0.00 0.00 2.93
36 37 5.378332 TCCTATTCCCGTTGAGAAAACAAA 58.622 37.500 0.00 0.00 0.00 2.83
37 38 4.975631 TCCTATTCCCGTTGAGAAAACAA 58.024 39.130 0.00 0.00 0.00 2.83
38 39 4.627284 TCCTATTCCCGTTGAGAAAACA 57.373 40.909 0.00 0.00 0.00 2.83
39 40 4.335594 CCATCCTATTCCCGTTGAGAAAAC 59.664 45.833 0.00 0.00 0.00 2.43
40 41 4.523083 CCATCCTATTCCCGTTGAGAAAA 58.477 43.478 0.00 0.00 0.00 2.29
41 42 3.684413 GCCATCCTATTCCCGTTGAGAAA 60.684 47.826 0.00 0.00 0.00 2.52
42 43 2.158813 GCCATCCTATTCCCGTTGAGAA 60.159 50.000 0.00 0.00 0.00 2.87
43 44 1.416401 GCCATCCTATTCCCGTTGAGA 59.584 52.381 0.00 0.00 0.00 3.27
44 45 1.417890 AGCCATCCTATTCCCGTTGAG 59.582 52.381 0.00 0.00 0.00 3.02
45 46 1.416401 GAGCCATCCTATTCCCGTTGA 59.584 52.381 0.00 0.00 0.00 3.18
46 47 1.543429 GGAGCCATCCTATTCCCGTTG 60.543 57.143 0.00 0.00 42.94 4.10
47 48 0.765510 GGAGCCATCCTATTCCCGTT 59.234 55.000 0.00 0.00 42.94 4.44
48 49 1.128188 GGGAGCCATCCTATTCCCGT 61.128 60.000 0.00 0.00 45.85 5.28
49 50 1.679898 GGGAGCCATCCTATTCCCG 59.320 63.158 0.00 0.00 45.85 5.14
50 51 1.376649 ATGGGAGCCATCCTATTCCC 58.623 55.000 1.43 1.43 43.94 3.97
140 141 2.762234 GCGTGGACGAGGACGAGAT 61.762 63.158 2.73 0.00 43.02 2.75
141 142 3.429141 GCGTGGACGAGGACGAGA 61.429 66.667 2.73 0.00 43.02 4.04
142 143 4.477975 GGCGTGGACGAGGACGAG 62.478 72.222 2.73 0.00 43.02 4.18
144 145 3.642778 AATGGCGTGGACGAGGACG 62.643 63.158 2.73 0.00 43.02 4.79
145 146 2.100631 CAATGGCGTGGACGAGGAC 61.101 63.158 2.73 0.00 43.02 3.85
146 147 2.264480 CAATGGCGTGGACGAGGA 59.736 61.111 2.73 0.00 43.02 3.71
147 148 2.819595 CCAATGGCGTGGACGAGG 60.820 66.667 2.73 0.00 41.65 4.63
148 149 2.819595 CCCAATGGCGTGGACGAG 60.820 66.667 8.52 0.00 41.65 4.18
149 150 2.684192 AAACCCAATGGCGTGGACGA 62.684 55.000 8.52 0.00 41.65 4.20
150 151 2.265182 AAACCCAATGGCGTGGACG 61.265 57.895 8.52 0.00 41.65 4.79
151 152 1.288752 CAAACCCAATGGCGTGGAC 59.711 57.895 8.52 0.00 41.65 4.02
152 153 1.905843 CCAAACCCAATGGCGTGGA 60.906 57.895 8.52 0.00 41.65 4.02
153 154 1.753368 AACCAAACCCAATGGCGTGG 61.753 55.000 11.17 11.17 41.89 4.94
154 155 0.599728 CAACCAAACCCAATGGCGTG 60.600 55.000 0.00 0.00 41.89 5.34
155 156 0.757188 TCAACCAAACCCAATGGCGT 60.757 50.000 0.00 0.00 41.89 5.68
156 157 0.319469 GTCAACCAAACCCAATGGCG 60.319 55.000 0.00 0.00 41.89 5.69
157 158 0.319469 CGTCAACCAAACCCAATGGC 60.319 55.000 0.00 0.00 41.89 4.40
158 159 0.319469 GCGTCAACCAAACCCAATGG 60.319 55.000 0.00 0.00 43.84 3.16
159 160 0.673437 AGCGTCAACCAAACCCAATG 59.327 50.000 0.00 0.00 0.00 2.82
160 161 1.883926 GTAGCGTCAACCAAACCCAAT 59.116 47.619 0.00 0.00 0.00 3.16
161 162 1.310904 GTAGCGTCAACCAAACCCAA 58.689 50.000 0.00 0.00 0.00 4.12
162 163 0.535553 GGTAGCGTCAACCAAACCCA 60.536 55.000 0.00 0.00 36.96 4.51
321 344 3.022406 AGATCCGACTTACTACCACCAC 58.978 50.000 0.00 0.00 0.00 4.16
322 345 3.285484 GAGATCCGACTTACTACCACCA 58.715 50.000 0.00 0.00 0.00 4.17
323 346 2.290093 CGAGATCCGACTTACTACCACC 59.710 54.545 0.00 0.00 41.76 4.61
357 383 4.139420 CAAAGTGCGCGCCGAGAG 62.139 66.667 30.77 12.26 0.00 3.20
376 411 2.335712 CGGGAAGAAACAGCAGGGC 61.336 63.158 0.00 0.00 0.00 5.19
377 412 0.537371 AACGGGAAGAAACAGCAGGG 60.537 55.000 0.00 0.00 0.00 4.45
378 413 2.178912 TAACGGGAAGAAACAGCAGG 57.821 50.000 0.00 0.00 0.00 4.85
389 424 2.851263 AGTGCAGACATTAACGGGAA 57.149 45.000 0.00 0.00 0.00 3.97
391 426 4.188462 TGAATAGTGCAGACATTAACGGG 58.812 43.478 0.00 0.00 0.00 5.28
392 427 5.523552 TCATGAATAGTGCAGACATTAACGG 59.476 40.000 0.00 0.00 0.00 4.44
452 487 3.865446 TGATGATGAAGCAGTCGACATT 58.135 40.909 19.50 9.35 0.00 2.71
465 500 1.570813 CGTTTAGCCGCTGATGATGA 58.429 50.000 2.16 0.00 0.00 2.92
466 501 0.583438 CCGTTTAGCCGCTGATGATG 59.417 55.000 2.16 0.00 0.00 3.07
467 502 0.464036 TCCGTTTAGCCGCTGATGAT 59.536 50.000 2.16 0.00 0.00 2.45
468 503 0.248012 TTCCGTTTAGCCGCTGATGA 59.752 50.000 2.16 0.00 0.00 2.92
469 504 0.652592 CTTCCGTTTAGCCGCTGATG 59.347 55.000 2.16 0.00 0.00 3.07
470 505 0.462047 CCTTCCGTTTAGCCGCTGAT 60.462 55.000 2.16 0.00 0.00 2.90
503 538 2.072298 GCTTAGGGATCATCGTCATGC 58.928 52.381 0.00 0.00 0.00 4.06
535 570 0.501854 CGCTGAAGATCTCAATCGCG 59.498 55.000 0.00 0.00 36.97 5.87
536 571 0.231790 GCGCTGAAGATCTCAATCGC 59.768 55.000 13.75 13.75 43.87 4.58
553 588 0.177141 TACCTTTGGAAGATCCGGCG 59.823 55.000 0.00 0.00 40.17 6.46
614 649 4.637091 TGAATATCCGTATTCGATCGGCTA 59.363 41.667 16.41 12.39 45.99 3.93
615 650 3.442625 TGAATATCCGTATTCGATCGGCT 59.557 43.478 16.41 5.42 45.99 5.52
616 651 3.546670 GTGAATATCCGTATTCGATCGGC 59.453 47.826 16.41 2.73 45.99 5.54
617 652 4.793731 CAGTGAATATCCGTATTCGATCGG 59.206 45.833 16.41 14.97 45.99 4.18
618 653 4.263209 GCAGTGAATATCCGTATTCGATCG 59.737 45.833 9.36 9.36 45.99 3.69
619 654 4.563184 GGCAGTGAATATCCGTATTCGATC 59.437 45.833 0.00 0.00 45.99 3.69
620 655 4.021456 TGGCAGTGAATATCCGTATTCGAT 60.021 41.667 0.00 0.00 45.99 3.59
621 656 3.319689 TGGCAGTGAATATCCGTATTCGA 59.680 43.478 0.00 0.00 45.99 3.71
638 673 2.408271 TGAAATAGAGTGGCTGGCAG 57.592 50.000 10.94 10.94 0.00 4.85
658 693 6.659242 CCTAGGTCACAGTTCCAACAAAATAT 59.341 38.462 0.00 0.00 0.00 1.28
659 694 6.001460 CCTAGGTCACAGTTCCAACAAAATA 58.999 40.000 0.00 0.00 0.00 1.40
661 696 4.204012 CCTAGGTCACAGTTCCAACAAAA 58.796 43.478 0.00 0.00 0.00 2.44
678 713 6.170506 TGTCACAACTTACAATTAGCCTAGG 58.829 40.000 3.67 3.67 0.00 3.02
793 3384 0.685097 TTCGTGACCCAGGAAAGGAG 59.315 55.000 0.00 0.00 35.72 3.69
828 3419 8.136057 ACTAAGATACAATCGAAATTGCTCAG 57.864 34.615 0.00 0.00 45.16 3.35
845 3436 6.038356 CCTTTTTACTTCGGCGACTAAGATA 58.962 40.000 10.16 0.00 36.66 1.98
855 3446 5.457799 GTCTTGTTTTCCTTTTTACTTCGGC 59.542 40.000 0.00 0.00 0.00 5.54
857 3448 6.193959 CACGTCTTGTTTTCCTTTTTACTTCG 59.806 38.462 0.00 0.00 0.00 3.79
862 3453 8.665643 TCTATCACGTCTTGTTTTCCTTTTTA 57.334 30.769 0.00 0.00 0.00 1.52
868 3462 4.142881 GGCTTCTATCACGTCTTGTTTTCC 60.143 45.833 0.00 0.00 0.00 3.13
869 3463 4.451096 TGGCTTCTATCACGTCTTGTTTTC 59.549 41.667 0.00 0.00 0.00 2.29
879 3473 2.200067 CTGCTTCTGGCTTCTATCACG 58.800 52.381 0.00 0.00 42.39 4.35
880 3474 3.258971 ACTGCTTCTGGCTTCTATCAC 57.741 47.619 0.00 0.00 42.39 3.06
899 3542 3.243336 CTCTCAAAGTGCGTAGGTGTAC 58.757 50.000 0.00 0.00 0.00 2.90
980 3739 4.162320 CCATCTACTACTTTCCCTGCAGAA 59.838 45.833 17.39 0.00 0.00 3.02
983 3742 3.197766 CACCATCTACTACTTTCCCTGCA 59.802 47.826 0.00 0.00 0.00 4.41
987 3746 3.197983 AGCACACCATCTACTACTTTCCC 59.802 47.826 0.00 0.00 0.00 3.97
1020 3779 4.631813 GGCATAACACTGAAACTAGGACAG 59.368 45.833 10.16 10.16 37.62 3.51
1178 4094 4.639135 AACACAAGAACAGGAGAAAAGC 57.361 40.909 0.00 0.00 0.00 3.51
1336 4252 3.930634 TCTCTGCATGTATCTCCATCG 57.069 47.619 0.00 0.00 0.00 3.84
1343 4259 6.073331 GCCAGTTTATCTTCTCTGCATGTATC 60.073 42.308 0.00 0.00 0.00 2.24
1508 4424 1.358152 TTGACCTCTTCAATCCCCGT 58.642 50.000 0.00 0.00 39.45 5.28
1560 4476 0.808755 CGGGCATGGGAACTTGTAAC 59.191 55.000 0.00 0.00 37.77 2.50
1650 4566 1.959226 GTCAAGCAACGAAGCCCGA 60.959 57.895 2.99 0.00 41.76 5.14
1658 4574 0.381801 AACAGCCTTGTCAAGCAACG 59.618 50.000 7.09 0.00 36.23 4.10
1700 4616 2.559381 AGGTGCCCTAACTCATCTCT 57.441 50.000 0.00 0.00 28.47 3.10
1766 4683 9.814899 AGATATCTTGAGGCGAATTATCTTATG 57.185 33.333 0.00 0.00 0.00 1.90
1894 4811 1.968493 ACCGGAAGTTTCTCTACAGCA 59.032 47.619 9.46 0.00 0.00 4.41
1897 4814 2.967201 TCCAACCGGAAGTTTCTCTACA 59.033 45.455 9.46 0.00 38.83 2.74
2137 5066 8.919777 TGGCACGACTACAGCTATATATATAT 57.080 34.615 10.10 10.10 0.00 0.86
2138 5067 8.919777 ATGGCACGACTACAGCTATATATATA 57.080 34.615 2.49 2.49 0.00 0.86
2139 5068 7.825331 ATGGCACGACTACAGCTATATATAT 57.175 36.000 0.00 0.00 0.00 0.86
2150 5079 4.765273 ACATATTCAATGGCACGACTACA 58.235 39.130 0.00 0.00 0.00 2.74
2242 5191 3.784178 TCAGGAAGAGGAATCTGACAGT 58.216 45.455 1.59 0.00 32.10 3.55
2249 5198 4.512484 CAGGTTCTTCAGGAAGAGGAATC 58.488 47.826 11.22 0.00 46.80 2.52
2273 5222 6.479006 CCCCTATCTGCATTAAGATCAATCA 58.521 40.000 0.00 0.00 37.98 2.57
2498 5577 7.797038 TGTTCATGTATCCATCAGAAATCAG 57.203 36.000 0.00 0.00 0.00 2.90
2513 5592 4.080413 TGGCATCCTTCTCATGTTCATGTA 60.080 41.667 11.73 0.87 0.00 2.29
2516 5595 3.552875 CTGGCATCCTTCTCATGTTCAT 58.447 45.455 0.00 0.00 0.00 2.57
2528 5607 0.326904 TGGAGATGTCCTGGCATCCT 60.327 55.000 20.28 12.01 44.58 3.24
2601 5680 4.073293 AGAATATGGCAGGTTAGTTCGG 57.927 45.455 0.00 0.00 0.00 4.30
2653 5732 2.502213 TGTCGTATATGGCGTCCAAG 57.498 50.000 2.68 0.00 36.95 3.61
2880 5962 2.664015 AGGGAGTGGTAGTCCGATTAC 58.336 52.381 0.00 0.00 38.63 1.89
2881 5963 3.749954 GCTAGGGAGTGGTAGTCCGATTA 60.750 52.174 0.00 0.00 38.63 1.75
2882 5964 2.946785 CTAGGGAGTGGTAGTCCGATT 58.053 52.381 0.00 0.00 38.63 3.34
2984 6103 3.508793 AGACCGGACGTGATTCTAAGAAA 59.491 43.478 9.46 0.00 0.00 2.52
3154 6750 9.801873 AATCCATGTCTTTTTATGATAAAACGG 57.198 29.630 9.70 6.66 0.00 4.44
3212 6808 7.233757 ACAACATAGACTTGAGGAGAACTAACT 59.766 37.037 0.00 0.00 0.00 2.24
3214 6810 7.540474 ACAACATAGACTTGAGGAGAACTAA 57.460 36.000 0.00 0.00 0.00 2.24
3215 6811 7.232737 TGAACAACATAGACTTGAGGAGAACTA 59.767 37.037 0.00 0.00 0.00 2.24
3232 6828 9.520204 GCATATGTAAAATAGCTTGAACAACAT 57.480 29.630 4.29 0.00 0.00 2.71
3255 6852 8.213679 TCTTTAAGGATTAAGCAGACATAGCAT 58.786 33.333 0.00 0.00 42.24 3.79
3265 6862 5.703592 TGCGAGTTTCTTTAAGGATTAAGCA 59.296 36.000 0.00 0.00 42.24 3.91
3268 6865 7.446013 TCCTTTGCGAGTTTCTTTAAGGATTAA 59.554 33.333 0.00 0.00 39.10 1.40
3270 6867 5.768164 TCCTTTGCGAGTTTCTTTAAGGATT 59.232 36.000 0.00 0.00 35.88 3.01
3273 6870 5.432885 TTCCTTTGCGAGTTTCTTTAAGG 57.567 39.130 0.00 0.00 33.61 2.69
3291 6888 2.356125 CGTCACCCCATCAAAGATTCCT 60.356 50.000 0.00 0.00 0.00 3.36
3293 6890 2.939103 CTCGTCACCCCATCAAAGATTC 59.061 50.000 0.00 0.00 0.00 2.52
3295 6892 1.210478 CCTCGTCACCCCATCAAAGAT 59.790 52.381 0.00 0.00 0.00 2.40
3296 6893 0.613260 CCTCGTCACCCCATCAAAGA 59.387 55.000 0.00 0.00 0.00 2.52
3297 6894 0.613260 TCCTCGTCACCCCATCAAAG 59.387 55.000 0.00 0.00 0.00 2.77
3298 6895 0.323629 GTCCTCGTCACCCCATCAAA 59.676 55.000 0.00 0.00 0.00 2.69
3299 6896 0.834261 TGTCCTCGTCACCCCATCAA 60.834 55.000 0.00 0.00 0.00 2.57
3300 6897 0.834261 TTGTCCTCGTCACCCCATCA 60.834 55.000 0.00 0.00 0.00 3.07
3301 6898 0.323629 TTTGTCCTCGTCACCCCATC 59.676 55.000 0.00 0.00 0.00 3.51
3302 6899 0.036306 GTTTGTCCTCGTCACCCCAT 59.964 55.000 0.00 0.00 0.00 4.00
3303 6900 1.338890 TGTTTGTCCTCGTCACCCCA 61.339 55.000 0.00 0.00 0.00 4.96
3304 6901 0.179040 TTGTTTGTCCTCGTCACCCC 60.179 55.000 0.00 0.00 0.00 4.95
3305 6902 1.670791 TTTGTTTGTCCTCGTCACCC 58.329 50.000 0.00 0.00 0.00 4.61
3306 6903 2.940410 TCTTTTGTTTGTCCTCGTCACC 59.060 45.455 0.00 0.00 0.00 4.02
3307 6904 3.002348 CCTCTTTTGTTTGTCCTCGTCAC 59.998 47.826 0.00 0.00 0.00 3.67
3308 6905 3.118555 TCCTCTTTTGTTTGTCCTCGTCA 60.119 43.478 0.00 0.00 0.00 4.35
3309 6906 3.247886 GTCCTCTTTTGTTTGTCCTCGTC 59.752 47.826 0.00 0.00 0.00 4.20
3310 6907 3.203716 GTCCTCTTTTGTTTGTCCTCGT 58.796 45.455 0.00 0.00 0.00 4.18
3311 6908 3.879932 GTCCTCTTTTGTTTGTCCTCG 57.120 47.619 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.