Multiple sequence alignment - TraesCS5A01G261300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G261300 chr5A 100.000 5543 0 0 1 5543 475274415 475268873 0.000000e+00 10237.0
1 TraesCS5A01G261300 chr5A 94.841 1725 76 8 1951 3672 474951748 474950034 0.000000e+00 2680.0
2 TraesCS5A01G261300 chr5A 91.061 839 44 8 4705 5543 474930085 474929278 0.000000e+00 1105.0
3 TraesCS5A01G261300 chr5A 92.295 597 29 4 3663 4244 474949970 474949376 0.000000e+00 832.0
4 TraesCS5A01G261300 chr5A 84.929 564 74 8 4987 5543 464206317 464206876 1.350000e-155 560.0
5 TraesCS5A01G261300 chr5A 89.258 391 25 5 4277 4663 474949375 474948998 1.810000e-129 473.0
6 TraesCS5A01G261300 chr5A 90.517 348 26 5 1428 1771 474960761 474960417 2.350000e-123 453.0
7 TraesCS5A01G261300 chr5D 94.087 1725 87 6 1961 3682 371854055 371852343 0.000000e+00 2606.0
8 TraesCS5A01G261300 chr5D 91.249 1897 111 29 3668 5543 371852244 371850382 0.000000e+00 2532.0
9 TraesCS5A01G261300 chr5D 95.035 705 30 3 815 1517 371855107 371854406 0.000000e+00 1103.0
10 TraesCS5A01G261300 chr5D 94.062 640 36 2 4904 5543 371843306 371842669 0.000000e+00 970.0
11 TraesCS5A01G261300 chr5D 84.534 569 77 6 4982 5543 362968127 362968691 2.260000e-153 553.0
12 TraesCS5A01G261300 chr5D 94.774 287 13 2 1516 1801 371854379 371854094 3.940000e-121 446.0
13 TraesCS5A01G261300 chr5D 73.981 319 75 8 67 382 481186367 481186054 7.540000e-24 122.0
14 TraesCS5A01G261300 chr5D 100.000 29 0 0 765 793 371855130 371855102 3.000000e-03 54.7
15 TraesCS5A01G261300 chr5B 91.410 1199 55 22 3688 4850 441673193 441672007 0.000000e+00 1600.0
16 TraesCS5A01G261300 chr5B 91.102 1180 59 20 1961 3139 441676053 441674919 0.000000e+00 1555.0
17 TraesCS5A01G261300 chr5B 91.127 1003 64 13 823 1801 441677093 441676092 0.000000e+00 1336.0
18 TraesCS5A01G261300 chr5B 94.935 691 33 1 4855 5543 441671897 441671207 0.000000e+00 1081.0
19 TraesCS5A01G261300 chr5B 92.222 450 23 7 3196 3637 441674922 441674477 1.310000e-175 627.0
20 TraesCS5A01G261300 chr5B 84.192 563 80 6 4987 5543 429419122 429419681 6.320000e-149 538.0
21 TraesCS5A01G261300 chr5B 79.893 562 105 6 4988 5542 429093228 429093788 6.690000e-109 405.0
22 TraesCS5A01G261300 chr7A 97.040 642 19 0 1 642 86095214 86095855 0.000000e+00 1081.0
23 TraesCS5A01G261300 chr3B 92.558 645 44 3 1 642 667683204 667682561 0.000000e+00 922.0
24 TraesCS5A01G261300 chr3B 92.414 145 11 0 1 145 774229146 774229002 2.020000e-49 207.0
25 TraesCS5A01G261300 chr3A 89.860 641 59 3 1 641 450767650 450768284 0.000000e+00 819.0
26 TraesCS5A01G261300 chr3A 92.949 156 10 1 1799 1954 383691085 383690931 5.590000e-55 226.0
27 TraesCS5A01G261300 chr3A 92.357 157 12 0 1797 1953 582283212 582283368 2.010000e-54 224.0
28 TraesCS5A01G261300 chr6A 77.912 498 90 16 3 493 409451077 409451561 5.430000e-75 292.0
29 TraesCS5A01G261300 chr4D 92.949 156 10 1 1799 1953 74079350 74079505 5.590000e-55 226.0
30 TraesCS5A01G261300 chr4D 72.441 381 95 10 7 382 201879616 201879991 4.540000e-21 113.0
31 TraesCS5A01G261300 chr4B 92.903 155 11 0 1799 1953 106227408 106227562 5.590000e-55 226.0
32 TraesCS5A01G261300 chr6D 92.857 154 11 0 1800 1953 392273074 392273227 2.010000e-54 224.0
33 TraesCS5A01G261300 chr3D 92.857 154 10 1 1800 1952 288550611 288550458 7.230000e-54 222.0
34 TraesCS5A01G261300 chr3D 91.720 157 13 0 1800 1956 322435292 322435448 9.350000e-53 219.0
35 TraesCS5A01G261300 chr2D 92.308 156 12 0 1797 1952 79056164 79056319 7.230000e-54 222.0
36 TraesCS5A01G261300 chr2D 79.268 246 47 4 5299 5542 482380313 482380556 9.550000e-38 169.0
37 TraesCS5A01G261300 chr1D 90.798 163 13 2 1790 1952 7349864 7349704 3.360000e-52 217.0
38 TraesCS5A01G261300 chr2B 82.703 185 32 0 5358 5542 566401276 566401460 1.240000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G261300 chr5A 475268873 475274415 5542 True 10237.000000 10237 100.000000 1 5543 1 chr5A.!!$R3 5542
1 TraesCS5A01G261300 chr5A 474948998 474951748 2750 True 1328.333333 2680 92.131333 1951 4663 3 chr5A.!!$R4 2712
2 TraesCS5A01G261300 chr5A 474929278 474930085 807 True 1105.000000 1105 91.061000 4705 5543 1 chr5A.!!$R1 838
3 TraesCS5A01G261300 chr5A 464206317 464206876 559 False 560.000000 560 84.929000 4987 5543 1 chr5A.!!$F1 556
4 TraesCS5A01G261300 chr5D 371850382 371855130 4748 True 1348.340000 2606 95.029000 765 5543 5 chr5D.!!$R3 4778
5 TraesCS5A01G261300 chr5D 371842669 371843306 637 True 970.000000 970 94.062000 4904 5543 1 chr5D.!!$R1 639
6 TraesCS5A01G261300 chr5D 362968127 362968691 564 False 553.000000 553 84.534000 4982 5543 1 chr5D.!!$F1 561
7 TraesCS5A01G261300 chr5B 441671207 441677093 5886 True 1239.800000 1600 92.159200 823 5543 5 chr5B.!!$R1 4720
8 TraesCS5A01G261300 chr5B 429419122 429419681 559 False 538.000000 538 84.192000 4987 5543 1 chr5B.!!$F2 556
9 TraesCS5A01G261300 chr5B 429093228 429093788 560 False 405.000000 405 79.893000 4988 5542 1 chr5B.!!$F1 554
10 TraesCS5A01G261300 chr7A 86095214 86095855 641 False 1081.000000 1081 97.040000 1 642 1 chr7A.!!$F1 641
11 TraesCS5A01G261300 chr3B 667682561 667683204 643 True 922.000000 922 92.558000 1 642 1 chr3B.!!$R1 641
12 TraesCS5A01G261300 chr3A 450767650 450768284 634 False 819.000000 819 89.860000 1 641 1 chr3A.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 963 0.033504 GTGTTCTTCTCCCTGACGCA 59.966 55.000 0.0 0.0 0.00 5.24 F
1095 1123 0.753479 ACATCTCCGCCGTCATCTCT 60.753 55.000 0.0 0.0 0.00 3.10 F
1813 1873 1.064906 ACGATCTACTCCCTCCGTTCA 60.065 52.381 0.0 0.0 0.00 3.18 F
1955 2015 0.107654 GGCAACGGAGGCAGTAGAAT 60.108 55.000 0.0 0.0 0.00 2.40 F
2276 2339 2.741517 TGTTCATTGTGGTGCGACATAG 59.258 45.455 0.0 0.0 0.00 2.23 F
3824 5199 2.229792 GGACATGCAAGTGTTTCTGGA 58.770 47.619 0.0 0.0 31.16 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 1991 0.037590 ACTGCCTCCGTTGCCAAATA 59.962 50.000 0.00 0.00 0.0 1.40 R
1932 1992 0.037590 TACTGCCTCCGTTGCCAAAT 59.962 50.000 0.00 0.00 0.0 2.32 R
2758 2824 2.161609 CACCCTCCACTATTTTGTTCGC 59.838 50.000 0.00 0.00 0.0 4.70 R
3470 3536 4.018490 TGATATGCATGCAACTGGAACTT 58.982 39.130 26.68 7.21 0.0 2.66 R
4047 5424 4.574674 AGACATGAGGTAGCAATTTCCA 57.425 40.909 0.00 0.00 0.0 3.53 R
5134 6674 1.028868 GGCTGAGGAAGGTGATGCAC 61.029 60.000 0.00 0.00 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 3.330267 GCTTACCAGACTCCTGTTTGAG 58.670 50.000 0.00 0.00 38.74 3.02
270 271 2.115266 CCCCACCGCCTGAAACTT 59.885 61.111 0.00 0.00 0.00 2.66
277 278 0.108138 CCGCCTGAAACTTCGATCCT 60.108 55.000 0.00 0.00 0.00 3.24
292 293 3.197983 TCGATCCTTTCCCTTTCTCCTTC 59.802 47.826 0.00 0.00 0.00 3.46
336 337 2.304221 TTCCTCTCTTCCTCCGACAA 57.696 50.000 0.00 0.00 0.00 3.18
430 431 4.227527 CCTCCTAGGGTTTTGGTGTCTTAT 59.772 45.833 9.46 0.00 0.00 1.73
435 436 3.139397 AGGGTTTTGGTGTCTTATGACCA 59.861 43.478 6.32 0.00 42.28 4.02
493 495 0.097674 GTTACGACGAGGCTCGCTTA 59.902 55.000 34.76 21.40 45.12 3.09
528 532 3.868757 ACGAAATCGATCAAGGTCAGA 57.131 42.857 10.16 0.00 43.02 3.27
650 654 2.671963 GGACGGACCCAACAAGCC 60.672 66.667 0.00 0.00 0.00 4.35
651 655 2.112297 GACGGACCCAACAAGCCA 59.888 61.111 0.00 0.00 0.00 4.75
652 656 2.203294 ACGGACCCAACAAGCCAC 60.203 61.111 0.00 0.00 0.00 5.01
653 657 3.353836 CGGACCCAACAAGCCACG 61.354 66.667 0.00 0.00 0.00 4.94
654 658 3.670377 GGACCCAACAAGCCACGC 61.670 66.667 0.00 0.00 0.00 5.34
655 659 3.670377 GACCCAACAAGCCACGCC 61.670 66.667 0.00 0.00 0.00 5.68
656 660 4.514585 ACCCAACAAGCCACGCCA 62.515 61.111 0.00 0.00 0.00 5.69
657 661 3.977244 CCCAACAAGCCACGCCAC 61.977 66.667 0.00 0.00 0.00 5.01
658 662 3.215568 CCAACAAGCCACGCCACA 61.216 61.111 0.00 0.00 0.00 4.17
659 663 2.780094 CCAACAAGCCACGCCACAA 61.780 57.895 0.00 0.00 0.00 3.33
660 664 1.363443 CAACAAGCCACGCCACAAT 59.637 52.632 0.00 0.00 0.00 2.71
661 665 0.664166 CAACAAGCCACGCCACAATC 60.664 55.000 0.00 0.00 0.00 2.67
662 666 2.128853 AACAAGCCACGCCACAATCG 62.129 55.000 0.00 0.00 0.00 3.34
663 667 2.281484 AAGCCACGCCACAATCGT 60.281 55.556 0.00 0.00 41.28 3.73
668 672 3.711842 ACGCCACAATCGTGCACG 61.712 61.111 32.76 32.76 42.17 5.34
679 683 0.523072 TCGTGCACGACTACCTTACC 59.477 55.000 36.40 0.00 44.22 2.85
680 684 0.795735 CGTGCACGACTACCTTACCG 60.796 60.000 34.93 1.01 43.02 4.02
681 685 1.074872 GTGCACGACTACCTTACCGC 61.075 60.000 0.00 0.00 0.00 5.68
682 686 1.213537 GCACGACTACCTTACCGCA 59.786 57.895 0.00 0.00 0.00 5.69
683 687 1.074872 GCACGACTACCTTACCGCAC 61.075 60.000 0.00 0.00 0.00 5.34
684 688 0.241749 CACGACTACCTTACCGCACA 59.758 55.000 0.00 0.00 0.00 4.57
685 689 0.242017 ACGACTACCTTACCGCACAC 59.758 55.000 0.00 0.00 0.00 3.82
686 690 0.241749 CGACTACCTTACCGCACACA 59.758 55.000 0.00 0.00 0.00 3.72
687 691 1.706443 GACTACCTTACCGCACACAC 58.294 55.000 0.00 0.00 0.00 3.82
688 692 1.000060 GACTACCTTACCGCACACACA 60.000 52.381 0.00 0.00 0.00 3.72
689 693 1.621814 ACTACCTTACCGCACACACAT 59.378 47.619 0.00 0.00 0.00 3.21
690 694 2.827322 ACTACCTTACCGCACACACATA 59.173 45.455 0.00 0.00 0.00 2.29
691 695 3.449737 ACTACCTTACCGCACACACATAT 59.550 43.478 0.00 0.00 0.00 1.78
692 696 3.343941 ACCTTACCGCACACACATATT 57.656 42.857 0.00 0.00 0.00 1.28
693 697 3.006940 ACCTTACCGCACACACATATTG 58.993 45.455 0.00 0.00 0.00 1.90
694 698 3.266636 CCTTACCGCACACACATATTGA 58.733 45.455 0.00 0.00 0.00 2.57
695 699 3.876914 CCTTACCGCACACACATATTGAT 59.123 43.478 0.00 0.00 0.00 2.57
696 700 4.260743 CCTTACCGCACACACATATTGATG 60.261 45.833 0.00 0.00 39.16 3.07
697 701 2.984562 ACCGCACACACATATTGATGA 58.015 42.857 0.00 0.00 36.48 2.92
698 702 2.938451 ACCGCACACACATATTGATGAG 59.062 45.455 0.00 0.00 36.48 2.90
699 703 3.197265 CCGCACACACATATTGATGAGA 58.803 45.455 0.00 0.00 36.48 3.27
700 704 3.622612 CCGCACACACATATTGATGAGAA 59.377 43.478 0.00 0.00 36.48 2.87
701 705 4.494690 CCGCACACACATATTGATGAGAAC 60.495 45.833 0.00 0.00 36.48 3.01
702 706 4.330894 CGCACACACATATTGATGAGAACT 59.669 41.667 0.00 0.00 36.48 3.01
703 707 5.566623 GCACACACATATTGATGAGAACTG 58.433 41.667 0.00 0.00 36.48 3.16
704 708 5.122869 GCACACACATATTGATGAGAACTGT 59.877 40.000 0.00 0.00 36.48 3.55
705 709 6.674037 GCACACACATATTGATGAGAACTGTC 60.674 42.308 0.00 0.00 36.48 3.51
706 710 5.578336 ACACACATATTGATGAGAACTGTCG 59.422 40.000 0.00 0.00 36.48 4.35
707 711 5.578336 CACACATATTGATGAGAACTGTCGT 59.422 40.000 0.00 0.00 36.48 4.34
708 712 5.578336 ACACATATTGATGAGAACTGTCGTG 59.422 40.000 0.00 0.00 36.48 4.35
709 713 5.578336 CACATATTGATGAGAACTGTCGTGT 59.422 40.000 0.00 0.00 36.48 4.49
710 714 6.091305 CACATATTGATGAGAACTGTCGTGTT 59.909 38.462 0.00 0.00 36.48 3.32
711 715 4.997905 ATTGATGAGAACTGTCGTGTTG 57.002 40.909 0.00 0.00 0.00 3.33
712 716 3.452755 TGATGAGAACTGTCGTGTTGT 57.547 42.857 0.00 0.00 0.00 3.32
713 717 3.792401 TGATGAGAACTGTCGTGTTGTT 58.208 40.909 0.00 0.00 0.00 2.83
714 718 4.188462 TGATGAGAACTGTCGTGTTGTTT 58.812 39.130 0.00 0.00 0.00 2.83
715 719 4.270084 TGATGAGAACTGTCGTGTTGTTTC 59.730 41.667 0.00 0.00 0.00 2.78
716 720 3.857052 TGAGAACTGTCGTGTTGTTTCT 58.143 40.909 0.00 0.00 0.00 2.52
717 721 5.001237 TGAGAACTGTCGTGTTGTTTCTA 57.999 39.130 0.00 0.00 0.00 2.10
718 722 5.597806 TGAGAACTGTCGTGTTGTTTCTAT 58.402 37.500 0.00 0.00 0.00 1.98
719 723 6.046593 TGAGAACTGTCGTGTTGTTTCTATT 58.953 36.000 0.00 0.00 0.00 1.73
720 724 6.019075 TGAGAACTGTCGTGTTGTTTCTATTG 60.019 38.462 0.00 0.00 0.00 1.90
721 725 4.468095 ACTGTCGTGTTGTTTCTATTGC 57.532 40.909 0.00 0.00 0.00 3.56
722 726 3.874543 ACTGTCGTGTTGTTTCTATTGCA 59.125 39.130 0.00 0.00 0.00 4.08
723 727 4.515191 ACTGTCGTGTTGTTTCTATTGCAT 59.485 37.500 0.00 0.00 0.00 3.96
724 728 5.008613 ACTGTCGTGTTGTTTCTATTGCATT 59.991 36.000 0.00 0.00 0.00 3.56
725 729 5.211454 TGTCGTGTTGTTTCTATTGCATTG 58.789 37.500 0.00 0.00 0.00 2.82
726 730 5.008118 TGTCGTGTTGTTTCTATTGCATTGA 59.992 36.000 0.00 0.00 0.00 2.57
727 731 5.339611 GTCGTGTTGTTTCTATTGCATTGAC 59.660 40.000 0.00 0.00 0.00 3.18
728 732 4.318071 CGTGTTGTTTCTATTGCATTGACG 59.682 41.667 0.00 0.00 0.00 4.35
729 733 4.616802 GTGTTGTTTCTATTGCATTGACGG 59.383 41.667 0.00 0.00 0.00 4.79
730 734 3.485947 TGTTTCTATTGCATTGACGGC 57.514 42.857 0.00 0.00 0.00 5.68
731 735 3.081061 TGTTTCTATTGCATTGACGGCT 58.919 40.909 0.00 0.00 0.00 5.52
732 736 3.505680 TGTTTCTATTGCATTGACGGCTT 59.494 39.130 0.00 0.00 0.00 4.35
733 737 4.022416 TGTTTCTATTGCATTGACGGCTTT 60.022 37.500 0.00 0.00 0.00 3.51
734 738 4.782019 TTCTATTGCATTGACGGCTTTT 57.218 36.364 0.00 0.00 0.00 2.27
735 739 4.355543 TCTATTGCATTGACGGCTTTTC 57.644 40.909 0.00 0.00 0.00 2.29
736 740 1.981254 ATTGCATTGACGGCTTTTCG 58.019 45.000 0.00 0.00 0.00 3.46
737 741 0.662970 TTGCATTGACGGCTTTTCGC 60.663 50.000 0.00 0.00 38.13 4.70
738 742 1.210155 GCATTGACGGCTTTTCGCT 59.790 52.632 0.00 0.00 39.13 4.93
739 743 0.794605 GCATTGACGGCTTTTCGCTC 60.795 55.000 0.00 0.00 39.13 5.03
740 744 0.798776 CATTGACGGCTTTTCGCTCT 59.201 50.000 0.00 0.00 39.13 4.09
741 745 1.197721 CATTGACGGCTTTTCGCTCTT 59.802 47.619 0.00 0.00 39.13 2.85
742 746 1.305201 TTGACGGCTTTTCGCTCTTT 58.695 45.000 0.00 0.00 39.13 2.52
743 747 0.865769 TGACGGCTTTTCGCTCTTTC 59.134 50.000 0.00 0.00 39.13 2.62
744 748 0.865769 GACGGCTTTTCGCTCTTTCA 59.134 50.000 0.00 0.00 39.13 2.69
745 749 0.586802 ACGGCTTTTCGCTCTTTCAC 59.413 50.000 0.00 0.00 39.13 3.18
746 750 0.586319 CGGCTTTTCGCTCTTTCACA 59.414 50.000 0.00 0.00 39.13 3.58
747 751 1.197721 CGGCTTTTCGCTCTTTCACAT 59.802 47.619 0.00 0.00 39.13 3.21
748 752 2.589014 GGCTTTTCGCTCTTTCACATG 58.411 47.619 0.00 0.00 39.13 3.21
749 753 2.589014 GCTTTTCGCTCTTTCACATGG 58.411 47.619 0.00 0.00 35.14 3.66
750 754 2.589014 CTTTTCGCTCTTTCACATGGC 58.411 47.619 0.00 0.00 0.00 4.40
751 755 1.896220 TTTCGCTCTTTCACATGGCT 58.104 45.000 0.00 0.00 0.00 4.75
752 756 2.760634 TTCGCTCTTTCACATGGCTA 57.239 45.000 0.00 0.00 0.00 3.93
753 757 2.760634 TCGCTCTTTCACATGGCTAA 57.239 45.000 0.00 0.00 0.00 3.09
754 758 2.346803 TCGCTCTTTCACATGGCTAAC 58.653 47.619 0.00 0.00 0.00 2.34
755 759 2.076100 CGCTCTTTCACATGGCTAACA 58.924 47.619 0.00 0.00 0.00 2.41
756 760 2.679837 CGCTCTTTCACATGGCTAACAT 59.320 45.455 0.00 0.00 41.57 2.71
757 761 3.127548 CGCTCTTTCACATGGCTAACATT 59.872 43.478 0.00 0.00 37.84 2.71
758 762 4.379813 CGCTCTTTCACATGGCTAACATTT 60.380 41.667 0.00 0.00 37.84 2.32
759 763 5.098211 GCTCTTTCACATGGCTAACATTTC 58.902 41.667 0.00 0.00 37.84 2.17
760 764 5.105997 GCTCTTTCACATGGCTAACATTTCT 60.106 40.000 0.00 0.00 37.84 2.52
761 765 6.571150 GCTCTTTCACATGGCTAACATTTCTT 60.571 38.462 0.00 0.00 37.84 2.52
762 766 7.362056 GCTCTTTCACATGGCTAACATTTCTTA 60.362 37.037 0.00 0.00 37.84 2.10
763 767 8.402798 TCTTTCACATGGCTAACATTTCTTAA 57.597 30.769 0.00 0.00 37.84 1.85
793 797 0.889186 AAGAACACATGTGGACGGGC 60.889 55.000 28.64 11.33 34.19 6.13
794 798 2.668212 AACACATGTGGACGGGCG 60.668 61.111 28.64 2.30 34.19 6.13
795 799 3.171828 AACACATGTGGACGGGCGA 62.172 57.895 28.64 0.00 34.19 5.54
796 800 2.125147 CACATGTGGACGGGCGAT 60.125 61.111 18.51 0.00 0.00 4.58
797 801 2.125147 ACATGTGGACGGGCGATG 60.125 61.111 0.00 0.00 0.00 3.84
798 802 3.576356 CATGTGGACGGGCGATGC 61.576 66.667 0.00 0.00 0.00 3.91
799 803 3.785859 ATGTGGACGGGCGATGCT 61.786 61.111 0.00 0.00 0.00 3.79
800 804 2.431454 ATGTGGACGGGCGATGCTA 61.431 57.895 0.00 0.00 0.00 3.49
801 805 2.585247 GTGGACGGGCGATGCTAC 60.585 66.667 0.00 0.00 0.00 3.58
802 806 3.071837 TGGACGGGCGATGCTACA 61.072 61.111 0.00 0.00 0.00 2.74
803 807 2.585247 GGACGGGCGATGCTACAC 60.585 66.667 0.00 0.00 0.00 2.90
804 808 2.954868 GACGGGCGATGCTACACG 60.955 66.667 0.00 0.00 0.00 4.49
955 963 0.033504 GTGTTCTTCTCCCTGACGCA 59.966 55.000 0.00 0.00 0.00 5.24
1021 1046 2.045242 TCACCCGTCTCCTCCTCG 60.045 66.667 0.00 0.00 0.00 4.63
1022 1047 2.361357 CACCCGTCTCCTCCTCGT 60.361 66.667 0.00 0.00 0.00 4.18
1023 1048 2.045143 ACCCGTCTCCTCCTCGTC 60.045 66.667 0.00 0.00 0.00 4.20
1051 1079 1.651770 TCACCCTCCTATTCTCCACCT 59.348 52.381 0.00 0.00 0.00 4.00
1095 1123 0.753479 ACATCTCCGCCGTCATCTCT 60.753 55.000 0.00 0.00 0.00 3.10
1188 1216 2.278013 GACATCGAGCGGTCCGTC 60.278 66.667 13.94 9.60 0.00 4.79
1377 1405 2.796304 CTCGTTGAGATCTCTGACAGC 58.204 52.381 22.95 5.21 0.00 4.40
1389 1417 1.372087 CTGACAGCGGGAATGCTTCC 61.372 60.000 6.43 6.43 44.46 3.46
1406 1434 3.428589 GCTTCCGTTCAGGTAATACGACT 60.429 47.826 0.00 0.00 41.99 4.18
1420 1448 2.932234 CGACTGACGGGCTTCAGGT 61.932 63.158 17.30 6.56 46.38 4.00
1453 1483 8.916062 TGGTTCATGAATGTTAATAATGCTCAT 58.084 29.630 12.12 0.00 0.00 2.90
1498 1528 8.033626 CCTCAAGAATAGACGTAAACCTAGTTT 58.966 37.037 0.00 0.00 39.24 2.66
1698 1757 8.314751 ACTCATATCTTGGCTACATATTGGTAC 58.685 37.037 0.00 0.00 0.00 3.34
1798 1858 5.048294 ACAATGGGGTTTTGAACTTACGATC 60.048 40.000 0.00 0.00 0.00 3.69
1801 1861 5.240121 TGGGGTTTTGAACTTACGATCTAC 58.760 41.667 0.00 0.00 0.00 2.59
1802 1862 5.012354 TGGGGTTTTGAACTTACGATCTACT 59.988 40.000 0.00 0.00 0.00 2.57
1803 1863 5.579904 GGGGTTTTGAACTTACGATCTACTC 59.420 44.000 0.00 0.00 0.00 2.59
1804 1864 5.579904 GGGTTTTGAACTTACGATCTACTCC 59.420 44.000 0.00 0.00 0.00 3.85
1807 1867 5.831702 TTGAACTTACGATCTACTCCCTC 57.168 43.478 0.00 0.00 0.00 4.30
1808 1868 4.205587 TGAACTTACGATCTACTCCCTCC 58.794 47.826 0.00 0.00 0.00 4.30
1809 1869 2.848691 ACTTACGATCTACTCCCTCCG 58.151 52.381 0.00 0.00 0.00 4.63
1811 1871 3.212685 CTTACGATCTACTCCCTCCGTT 58.787 50.000 0.00 0.00 0.00 4.44
1812 1872 1.677942 ACGATCTACTCCCTCCGTTC 58.322 55.000 0.00 0.00 0.00 3.95
1813 1873 1.064906 ACGATCTACTCCCTCCGTTCA 60.065 52.381 0.00 0.00 0.00 3.18
1814 1874 1.334243 CGATCTACTCCCTCCGTTCAC 59.666 57.143 0.00 0.00 0.00 3.18
1818 1878 3.170717 TCTACTCCCTCCGTTCACAAAT 58.829 45.455 0.00 0.00 0.00 2.32
1819 1879 4.346730 TCTACTCCCTCCGTTCACAAATA 58.653 43.478 0.00 0.00 0.00 1.40
1821 1881 6.131264 TCTACTCCCTCCGTTCACAAATATA 58.869 40.000 0.00 0.00 0.00 0.86
1823 1883 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
1824 1884 5.189145 ACTCCCTCCGTTCACAAATATAAGT 59.811 40.000 0.00 0.00 0.00 2.24
1825 1885 6.057321 TCCCTCCGTTCACAAATATAAGTT 57.943 37.500 0.00 0.00 0.00 2.66
1827 1887 5.646360 CCCTCCGTTCACAAATATAAGTTGT 59.354 40.000 0.48 0.48 39.79 3.32
1828 1888 6.150474 CCCTCCGTTCACAAATATAAGTTGTT 59.850 38.462 3.11 0.00 37.09 2.83
1847 1907 8.628882 AGTTGTTTTAACTTTTTCCTGAATCG 57.371 30.769 0.00 0.00 0.00 3.34
1848 1908 8.463607 AGTTGTTTTAACTTTTTCCTGAATCGA 58.536 29.630 0.00 0.00 0.00 3.59
1849 1909 9.078753 GTTGTTTTAACTTTTTCCTGAATCGAA 57.921 29.630 0.00 0.00 0.00 3.71
1850 1910 9.810545 TTGTTTTAACTTTTTCCTGAATCGAAT 57.189 25.926 0.00 0.00 0.00 3.34
1851 1911 9.243637 TGTTTTAACTTTTTCCTGAATCGAATG 57.756 29.630 0.00 0.00 0.00 2.67
1852 1912 9.244799 GTTTTAACTTTTTCCTGAATCGAATGT 57.755 29.630 0.00 0.00 0.00 2.71
1862 1922 9.692749 TTTCCTGAATCGAATGTATATAGACAC 57.307 33.333 1.52 0.00 30.52 3.67
1863 1923 7.527457 TCCTGAATCGAATGTATATAGACACG 58.473 38.462 1.52 3.35 30.52 4.49
1864 1924 7.174426 TCCTGAATCGAATGTATATAGACACGT 59.826 37.037 1.52 0.00 30.52 4.49
1865 1925 7.808381 CCTGAATCGAATGTATATAGACACGTT 59.192 37.037 1.52 0.00 30.52 3.99
1866 1926 9.181805 CTGAATCGAATGTATATAGACACGTTT 57.818 33.333 1.52 4.70 30.52 3.60
1867 1927 9.524106 TGAATCGAATGTATATAGACACGTTTT 57.476 29.630 1.52 2.65 30.52 2.43
1871 1931 9.442033 TCGAATGTATATAGACACGTTTTAGTG 57.558 33.333 1.52 0.00 46.83 2.74
1882 1942 5.658674 CACGTTTTAGTGTGTTTGTTCAC 57.341 39.130 0.00 0.00 37.35 3.18
1883 1943 5.387279 CACGTTTTAGTGTGTTTGTTCACT 58.613 37.500 0.00 0.00 45.21 3.41
1884 1944 5.506832 CACGTTTTAGTGTGTTTGTTCACTC 59.493 40.000 1.08 0.00 42.77 3.51
1885 1945 5.179742 ACGTTTTAGTGTGTTTGTTCACTCA 59.820 36.000 1.08 0.00 42.77 3.41
1886 1946 6.128117 ACGTTTTAGTGTGTTTGTTCACTCAT 60.128 34.615 1.08 0.00 42.77 2.90
1887 1947 6.745450 CGTTTTAGTGTGTTTGTTCACTCATT 59.255 34.615 1.08 0.00 42.77 2.57
1888 1948 7.272515 CGTTTTAGTGTGTTTGTTCACTCATTT 59.727 33.333 1.08 0.00 42.77 2.32
1889 1949 8.583765 GTTTTAGTGTGTTTGTTCACTCATTTC 58.416 33.333 1.08 0.00 42.77 2.17
1890 1950 5.895636 AGTGTGTTTGTTCACTCATTTCA 57.104 34.783 0.00 0.00 40.28 2.69
1891 1951 6.266168 AGTGTGTTTGTTCACTCATTTCAA 57.734 33.333 0.00 0.00 40.28 2.69
1892 1952 6.866480 AGTGTGTTTGTTCACTCATTTCAAT 58.134 32.000 0.00 0.00 40.28 2.57
1893 1953 6.974622 AGTGTGTTTGTTCACTCATTTCAATC 59.025 34.615 0.00 0.00 40.28 2.67
1894 1954 6.198966 GTGTGTTTGTTCACTCATTTCAATCC 59.801 38.462 0.00 0.00 38.90 3.01
1895 1955 5.399301 GTGTTTGTTCACTCATTTCAATCCG 59.601 40.000 0.00 0.00 35.68 4.18
1896 1956 5.067153 TGTTTGTTCACTCATTTCAATCCGT 59.933 36.000 0.00 0.00 0.00 4.69
1897 1957 6.261158 TGTTTGTTCACTCATTTCAATCCGTA 59.739 34.615 0.00 0.00 0.00 4.02
1898 1958 7.040755 TGTTTGTTCACTCATTTCAATCCGTAT 60.041 33.333 0.00 0.00 0.00 3.06
1899 1959 6.421377 TGTTCACTCATTTCAATCCGTATG 57.579 37.500 0.00 0.00 0.00 2.39
1900 1960 5.937540 TGTTCACTCATTTCAATCCGTATGT 59.062 36.000 0.00 0.00 0.00 2.29
1901 1961 7.100409 TGTTCACTCATTTCAATCCGTATGTA 58.900 34.615 0.00 0.00 0.00 2.29
1902 1962 7.277760 TGTTCACTCATTTCAATCCGTATGTAG 59.722 37.037 0.00 0.00 0.00 2.74
1903 1963 6.873997 TCACTCATTTCAATCCGTATGTAGT 58.126 36.000 0.00 0.00 0.00 2.73
1904 1964 6.978659 TCACTCATTTCAATCCGTATGTAGTC 59.021 38.462 0.00 0.00 0.00 2.59
1905 1965 6.201044 CACTCATTTCAATCCGTATGTAGTCC 59.799 42.308 0.00 0.00 0.00 3.85
1906 1966 6.127168 ACTCATTTCAATCCGTATGTAGTCCA 60.127 38.462 0.00 0.00 0.00 4.02
1907 1967 6.826668 TCATTTCAATCCGTATGTAGTCCAT 58.173 36.000 0.00 0.00 37.58 3.41
1908 1968 7.958088 TCATTTCAATCCGTATGTAGTCCATA 58.042 34.615 0.00 0.00 34.86 2.74
1909 1969 8.593679 TCATTTCAATCCGTATGTAGTCCATAT 58.406 33.333 0.00 0.00 38.29 1.78
1910 1970 9.219603 CATTTCAATCCGTATGTAGTCCATATT 57.780 33.333 0.00 0.00 38.29 1.28
1911 1971 8.601845 TTTCAATCCGTATGTAGTCCATATTG 57.398 34.615 0.00 0.00 38.29 1.90
1912 1972 7.533289 TCAATCCGTATGTAGTCCATATTGA 57.467 36.000 0.00 0.00 38.29 2.57
1913 1973 7.958088 TCAATCCGTATGTAGTCCATATTGAA 58.042 34.615 0.00 0.00 38.29 2.69
1914 1974 8.425703 TCAATCCGTATGTAGTCCATATTGAAA 58.574 33.333 0.00 0.00 38.29 2.69
1915 1975 9.219603 CAATCCGTATGTAGTCCATATTGAAAT 57.780 33.333 0.00 0.00 38.29 2.17
1919 1979 9.314321 CCGTATGTAGTCCATATTGAAATATCC 57.686 37.037 0.00 0.00 38.29 2.59
1920 1980 9.869757 CGTATGTAGTCCATATTGAAATATCCA 57.130 33.333 0.00 0.00 38.29 3.41
1942 2002 7.220599 CCAAAACATCTTATATTTGGCAACG 57.779 36.000 0.00 0.00 43.60 4.10
1943 2003 6.255453 CCAAAACATCTTATATTTGGCAACGG 59.745 38.462 0.00 0.00 43.60 4.44
1944 2004 6.767524 AAACATCTTATATTTGGCAACGGA 57.232 33.333 0.00 0.00 42.51 4.69
1945 2005 6.377327 AACATCTTATATTTGGCAACGGAG 57.623 37.500 0.00 0.00 42.51 4.63
1946 2006 4.821805 ACATCTTATATTTGGCAACGGAGG 59.178 41.667 0.00 0.00 42.51 4.30
1947 2007 3.211045 TCTTATATTTGGCAACGGAGGC 58.789 45.455 0.00 0.00 42.51 4.70
1948 2008 2.719531 TATATTTGGCAACGGAGGCA 57.280 45.000 0.00 1.52 42.83 4.75
1949 2009 1.392589 ATATTTGGCAACGGAGGCAG 58.607 50.000 0.00 0.00 45.28 4.85
1955 2015 0.107654 GGCAACGGAGGCAGTAGAAT 60.108 55.000 0.00 0.00 0.00 2.40
1994 2054 3.947834 ACAGAAGCAAGCAACTAAACAGT 59.052 39.130 0.00 0.00 0.00 3.55
2002 2062 4.680171 AGCAACTAAACAGTATTTCGGC 57.320 40.909 0.00 0.00 0.00 5.54
2042 2104 5.212194 GCCGTATGCGTCATAAATCATTTT 58.788 37.500 1.69 0.00 36.15 1.82
2043 2105 5.115472 GCCGTATGCGTCATAAATCATTTTG 59.885 40.000 1.69 0.00 36.15 2.44
2044 2106 5.624900 CCGTATGCGTCATAAATCATTTTGG 59.375 40.000 1.69 0.00 36.15 3.28
2051 2113 7.281999 TGCGTCATAAATCATTTTGGTCTGATA 59.718 33.333 0.00 0.00 31.95 2.15
2135 2197 4.454728 AAGTTGAAAAGCTTGCACAAGA 57.545 36.364 14.44 0.00 40.79 3.02
2142 2204 6.035843 TGAAAAGCTTGCACAAGAAACTAAG 58.964 36.000 14.44 0.00 40.79 2.18
2155 2217 7.444183 CACAAGAAACTAAGTACCTGGATTCAA 59.556 37.037 0.00 0.00 0.00 2.69
2169 2231 5.452356 CCTGGATTCAAATTACATGCCTTCC 60.452 44.000 0.00 0.00 0.00 3.46
2276 2339 2.741517 TGTTCATTGTGGTGCGACATAG 59.258 45.455 0.00 0.00 0.00 2.23
2277 2340 2.742053 GTTCATTGTGGTGCGACATAGT 59.258 45.455 0.00 0.00 0.00 2.12
2278 2341 3.878160 TCATTGTGGTGCGACATAGTA 57.122 42.857 0.00 0.00 0.00 1.82
2338 2401 2.770164 AGTAGACACCCTTGACATGC 57.230 50.000 0.00 0.00 0.00 4.06
2427 2490 3.627237 GGTTTCCATGGGGCTGAAGAATA 60.627 47.826 13.02 0.00 0.00 1.75
2495 2558 8.723942 ATATGAAAGACTTGGACATAACACTC 57.276 34.615 11.35 0.00 0.00 3.51
2758 2824 4.359971 TCATCTGTGGAAAATGCGATTG 57.640 40.909 0.00 0.00 0.00 2.67
3037 3103 4.561735 TTGGACGAAGATGTTTTCAACC 57.438 40.909 0.00 0.00 0.00 3.77
3182 3248 3.071479 TGAACCTAGACGTTTTCCATGC 58.929 45.455 0.00 0.00 0.00 4.06
3200 3266 7.891498 TCCATGCTTCAACTATACTACTACA 57.109 36.000 0.00 0.00 0.00 2.74
3225 3291 4.411540 ACCAGTGAGCCTATTCTGATTGAT 59.588 41.667 0.00 0.00 0.00 2.57
3443 3509 3.006967 ACCACAGTGGACTTAGATGTCAC 59.993 47.826 27.39 0.00 40.96 3.67
3470 3536 8.647796 AGTAATCGTATTGGGTTCTGATGATAA 58.352 33.333 0.00 0.00 0.00 1.75
3551 3622 8.696374 TCCTATCCTAGTTGTTCAGTTTATGAG 58.304 37.037 0.00 0.00 39.68 2.90
3574 3645 9.434275 TGAGAGGTAATCTATTGGAGTGAAATA 57.566 33.333 0.00 0.00 38.84 1.40
3753 5127 9.842775 ACATATGCATCTTTCTCAATCTCTTAA 57.157 29.630 0.19 0.00 0.00 1.85
3824 5199 2.229792 GGACATGCAAGTGTTTCTGGA 58.770 47.619 0.00 0.00 31.16 3.86
3833 5208 6.913170 TGCAAGTGTTTCTGGAAATAATCTC 58.087 36.000 0.00 0.00 32.36 2.75
4047 5424 1.829849 TGCTAGCACTGAGATGAGCTT 59.170 47.619 14.93 0.00 38.47 3.74
4109 5500 8.958119 TTATGTTATGCTAAGTACTTGAAGGG 57.042 34.615 18.56 4.55 0.00 3.95
4161 5552 2.567615 AGATGTCCTTAAACCTGACGCT 59.432 45.455 0.00 0.00 0.00 5.07
4315 5707 3.016736 TGTCAGAGTCTGATGCGTATCA 58.983 45.455 25.17 15.64 42.73 2.15
4398 5790 3.494924 CCATCATCAAGGGCTTCGTCATA 60.495 47.826 0.00 0.00 0.00 2.15
4437 5829 7.568349 TCCTCACTTCATACTCAAGCATAATT 58.432 34.615 0.00 0.00 0.00 1.40
4486 5878 8.090831 TCGAACCAATGAATAGATCTGGAATAG 58.909 37.037 5.18 0.00 0.00 1.73
4487 5879 7.148507 CGAACCAATGAATAGATCTGGAATAGC 60.149 40.741 5.18 0.00 0.00 2.97
4488 5880 7.083062 ACCAATGAATAGATCTGGAATAGCA 57.917 36.000 5.18 0.00 0.00 3.49
4498 5893 3.674997 TCTGGAATAGCAGTTGTTGGAC 58.325 45.455 0.00 0.00 0.00 4.02
4517 5912 0.036010 CCAGTCAGCAAAGATCCGGT 60.036 55.000 0.00 0.00 0.00 5.28
4604 5999 1.337728 TGTAGTCTGGCATCGGTTGTG 60.338 52.381 0.00 0.00 0.00 3.33
4612 6007 2.033550 TGGCATCGGTTGTGTAAACAAC 59.966 45.455 19.03 19.03 46.60 3.32
4638 6047 0.899720 AAACTAAGGTCCGGCATCGA 59.100 50.000 0.00 0.00 39.00 3.59
4735 6161 3.801114 TCCGTGAATCTGGTATGTGAG 57.199 47.619 0.00 0.00 0.00 3.51
4770 6196 1.480954 CTGGACCCGCTGTAACACTAT 59.519 52.381 0.00 0.00 0.00 2.12
4818 6244 6.266168 TGGTTTCAACATTGTGATGTATCC 57.734 37.500 0.00 0.00 45.58 2.59
4821 6247 2.607180 TCAACATTGTGATGTATCCGCG 59.393 45.455 0.00 0.00 45.58 6.46
4835 6261 1.116308 TCCGCGGTTCTTCCATATGA 58.884 50.000 27.15 0.00 35.57 2.15
4836 6262 1.202486 TCCGCGGTTCTTCCATATGAC 60.202 52.381 27.15 0.00 35.57 3.06
4837 6263 1.472552 CCGCGGTTCTTCCATATGACA 60.473 52.381 19.50 0.00 35.57 3.58
4839 6265 2.872245 CGCGGTTCTTCCATATGACAAT 59.128 45.455 3.65 0.00 35.57 2.71
4840 6266 3.312421 CGCGGTTCTTCCATATGACAATT 59.688 43.478 3.65 0.00 35.57 2.32
4841 6267 4.509970 CGCGGTTCTTCCATATGACAATTA 59.490 41.667 3.65 0.00 35.57 1.40
4842 6268 5.179368 CGCGGTTCTTCCATATGACAATTAT 59.821 40.000 3.65 0.00 35.57 1.28
4843 6269 6.367695 CGCGGTTCTTCCATATGACAATTATA 59.632 38.462 3.65 0.00 35.57 0.98
4844 6270 7.095397 CGCGGTTCTTCCATATGACAATTATAA 60.095 37.037 3.65 0.00 35.57 0.98
4845 6271 8.730680 GCGGTTCTTCCATATGACAATTATAAT 58.269 33.333 3.65 0.00 35.57 1.28
4894 6426 6.085979 GTCGTTCGGTCAACTATAATACGATG 59.914 42.308 0.00 0.00 37.73 3.84
4895 6427 5.341462 CGTTCGGTCAACTATAATACGATGG 59.659 44.000 0.00 0.00 32.09 3.51
4899 6431 6.209986 TCGGTCAACTATAATACGATGGGAAT 59.790 38.462 0.00 0.00 0.00 3.01
5032 6566 5.237996 CAGATTTGTCACAGCTTTCTTCTCA 59.762 40.000 0.00 0.00 0.00 3.27
5104 6638 4.767409 GGTTCCTCAAGTAAGCTTTCCATT 59.233 41.667 3.20 0.00 31.49 3.16
5113 6647 5.880901 AGTAAGCTTTCCATTTCTTCAGGA 58.119 37.500 3.20 0.00 0.00 3.86
5254 6794 5.563671 CGCGATCTCTTCAAGAATCTCCATA 60.564 44.000 0.00 0.00 37.61 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 4.261447 GGGATAACAGGTTTGTGTTCACAC 60.261 45.833 5.07 2.93 46.59 3.82
214 215 0.602106 CGGCTCATCCAGATGCGATT 60.602 55.000 2.63 0.00 38.65 3.34
270 271 2.834113 AGGAGAAAGGGAAAGGATCGA 58.166 47.619 0.00 0.00 0.00 3.59
277 278 1.081481 GGGGGAAGGAGAAAGGGAAA 58.919 55.000 0.00 0.00 0.00 3.13
430 431 3.479203 CCCTAGGGCGCATGGTCA 61.479 66.667 16.90 0.00 0.00 4.02
493 495 0.803117 TTCGTTCGTCTCTCGCATCT 59.197 50.000 0.00 0.00 39.67 2.90
528 532 1.269174 CTGTGATCGATCGCCATCTCT 59.731 52.381 30.52 0.00 36.51 3.10
642 646 0.664166 GATTGTGGCGTGGCTTGTTG 60.664 55.000 0.00 0.00 0.00 3.33
643 647 1.659794 GATTGTGGCGTGGCTTGTT 59.340 52.632 0.00 0.00 0.00 2.83
644 648 2.616330 CGATTGTGGCGTGGCTTGT 61.616 57.895 0.00 0.00 0.00 3.16
645 649 2.176546 CGATTGTGGCGTGGCTTG 59.823 61.111 0.00 0.00 0.00 4.01
646 650 2.281484 ACGATTGTGGCGTGGCTT 60.281 55.556 0.00 0.00 40.94 4.35
651 655 3.711842 CGTGCACGATTGTGGCGT 61.712 61.111 34.93 0.00 46.51 5.68
652 656 3.410516 TCGTGCACGATTGTGGCG 61.411 61.111 36.40 9.66 46.51 5.69
661 665 0.795735 CGGTAAGGTAGTCGTGCACG 60.796 60.000 32.76 32.76 41.45 5.34
662 666 1.074872 GCGGTAAGGTAGTCGTGCAC 61.075 60.000 6.82 6.82 0.00 4.57
663 667 1.213537 GCGGTAAGGTAGTCGTGCA 59.786 57.895 0.00 0.00 0.00 4.57
664 668 1.074872 GTGCGGTAAGGTAGTCGTGC 61.075 60.000 0.00 0.00 0.00 5.34
665 669 0.241749 TGTGCGGTAAGGTAGTCGTG 59.758 55.000 0.00 0.00 0.00 4.35
666 670 0.242017 GTGTGCGGTAAGGTAGTCGT 59.758 55.000 0.00 0.00 0.00 4.34
667 671 0.241749 TGTGTGCGGTAAGGTAGTCG 59.758 55.000 0.00 0.00 0.00 4.18
668 672 1.000060 TGTGTGTGCGGTAAGGTAGTC 60.000 52.381 0.00 0.00 0.00 2.59
669 673 1.042229 TGTGTGTGCGGTAAGGTAGT 58.958 50.000 0.00 0.00 0.00 2.73
670 674 2.380084 ATGTGTGTGCGGTAAGGTAG 57.620 50.000 0.00 0.00 0.00 3.18
671 675 4.081586 TCAATATGTGTGTGCGGTAAGGTA 60.082 41.667 0.00 0.00 0.00 3.08
672 676 3.006940 CAATATGTGTGTGCGGTAAGGT 58.993 45.455 0.00 0.00 0.00 3.50
673 677 3.266636 TCAATATGTGTGTGCGGTAAGG 58.733 45.455 0.00 0.00 0.00 2.69
674 678 4.570369 TCATCAATATGTGTGTGCGGTAAG 59.430 41.667 0.00 0.00 34.50 2.34
675 679 4.508662 TCATCAATATGTGTGTGCGGTAA 58.491 39.130 0.00 0.00 34.50 2.85
676 680 4.119136 CTCATCAATATGTGTGTGCGGTA 58.881 43.478 0.00 0.00 34.50 4.02
677 681 2.938451 CTCATCAATATGTGTGTGCGGT 59.062 45.455 0.00 0.00 34.50 5.68
678 682 3.197265 TCTCATCAATATGTGTGTGCGG 58.803 45.455 0.00 0.00 34.50 5.69
679 683 4.330894 AGTTCTCATCAATATGTGTGTGCG 59.669 41.667 0.00 0.00 34.50 5.34
680 684 5.122869 ACAGTTCTCATCAATATGTGTGTGC 59.877 40.000 0.00 0.00 34.50 4.57
681 685 6.454715 CGACAGTTCTCATCAATATGTGTGTG 60.455 42.308 0.00 0.00 34.50 3.82
682 686 5.578336 CGACAGTTCTCATCAATATGTGTGT 59.422 40.000 0.00 0.00 34.50 3.72
683 687 5.578336 ACGACAGTTCTCATCAATATGTGTG 59.422 40.000 0.00 0.00 34.50 3.82
684 688 5.578336 CACGACAGTTCTCATCAATATGTGT 59.422 40.000 0.00 0.00 34.50 3.72
685 689 5.578336 ACACGACAGTTCTCATCAATATGTG 59.422 40.000 0.00 0.00 34.50 3.21
686 690 5.724328 ACACGACAGTTCTCATCAATATGT 58.276 37.500 0.00 0.00 34.50 2.29
687 691 6.091305 ACAACACGACAGTTCTCATCAATATG 59.909 38.462 0.00 0.00 0.00 1.78
688 692 6.166279 ACAACACGACAGTTCTCATCAATAT 58.834 36.000 0.00 0.00 0.00 1.28
689 693 5.538118 ACAACACGACAGTTCTCATCAATA 58.462 37.500 0.00 0.00 0.00 1.90
690 694 4.380531 ACAACACGACAGTTCTCATCAAT 58.619 39.130 0.00 0.00 0.00 2.57
691 695 3.792401 ACAACACGACAGTTCTCATCAA 58.208 40.909 0.00 0.00 0.00 2.57
692 696 3.452755 ACAACACGACAGTTCTCATCA 57.547 42.857 0.00 0.00 0.00 3.07
693 697 4.508124 AGAAACAACACGACAGTTCTCATC 59.492 41.667 0.00 0.00 0.00 2.92
694 698 4.442706 AGAAACAACACGACAGTTCTCAT 58.557 39.130 0.00 0.00 0.00 2.90
695 699 3.857052 AGAAACAACACGACAGTTCTCA 58.143 40.909 0.00 0.00 0.00 3.27
696 700 6.355638 CAATAGAAACAACACGACAGTTCTC 58.644 40.000 0.00 0.00 0.00 2.87
697 701 5.277345 GCAATAGAAACAACACGACAGTTCT 60.277 40.000 0.00 0.00 0.00 3.01
698 702 4.904154 GCAATAGAAACAACACGACAGTTC 59.096 41.667 0.00 0.00 0.00 3.01
699 703 4.334203 TGCAATAGAAACAACACGACAGTT 59.666 37.500 0.00 0.00 0.00 3.16
700 704 3.874543 TGCAATAGAAACAACACGACAGT 59.125 39.130 0.00 0.00 0.00 3.55
701 705 4.466567 TGCAATAGAAACAACACGACAG 57.533 40.909 0.00 0.00 0.00 3.51
702 706 5.008118 TCAATGCAATAGAAACAACACGACA 59.992 36.000 0.00 0.00 0.00 4.35
703 707 5.339611 GTCAATGCAATAGAAACAACACGAC 59.660 40.000 0.00 0.00 0.00 4.34
704 708 5.448438 GTCAATGCAATAGAAACAACACGA 58.552 37.500 0.00 0.00 0.00 4.35
705 709 4.318071 CGTCAATGCAATAGAAACAACACG 59.682 41.667 0.00 0.00 0.00 4.49
706 710 4.616802 CCGTCAATGCAATAGAAACAACAC 59.383 41.667 0.00 0.00 0.00 3.32
707 711 4.793071 CCGTCAATGCAATAGAAACAACA 58.207 39.130 0.00 0.00 0.00 3.33
708 712 3.608073 GCCGTCAATGCAATAGAAACAAC 59.392 43.478 0.00 0.00 0.00 3.32
709 713 3.505680 AGCCGTCAATGCAATAGAAACAA 59.494 39.130 0.00 0.00 0.00 2.83
710 714 3.081061 AGCCGTCAATGCAATAGAAACA 58.919 40.909 0.00 0.00 0.00 2.83
711 715 3.764885 AGCCGTCAATGCAATAGAAAC 57.235 42.857 0.00 0.00 0.00 2.78
712 716 4.782019 AAAGCCGTCAATGCAATAGAAA 57.218 36.364 0.00 0.00 0.00 2.52
713 717 4.671508 CGAAAAGCCGTCAATGCAATAGAA 60.672 41.667 0.00 0.00 0.00 2.10
714 718 3.181511 CGAAAAGCCGTCAATGCAATAGA 60.182 43.478 0.00 0.00 0.00 1.98
715 719 3.100817 CGAAAAGCCGTCAATGCAATAG 58.899 45.455 0.00 0.00 0.00 1.73
716 720 2.730715 GCGAAAAGCCGTCAATGCAATA 60.731 45.455 0.00 0.00 40.81 1.90
717 721 1.981254 CGAAAAGCCGTCAATGCAAT 58.019 45.000 0.00 0.00 0.00 3.56
718 722 0.662970 GCGAAAAGCCGTCAATGCAA 60.663 50.000 0.00 0.00 40.81 4.08
719 723 1.081509 GCGAAAAGCCGTCAATGCA 60.082 52.632 0.00 0.00 40.81 3.96
720 724 3.754091 GCGAAAAGCCGTCAATGC 58.246 55.556 0.00 0.00 40.81 3.56
730 734 2.227388 AGCCATGTGAAAGAGCGAAAAG 59.773 45.455 0.00 0.00 0.00 2.27
731 735 2.229792 AGCCATGTGAAAGAGCGAAAA 58.770 42.857 0.00 0.00 0.00 2.29
732 736 1.896220 AGCCATGTGAAAGAGCGAAA 58.104 45.000 0.00 0.00 0.00 3.46
733 737 2.742053 GTTAGCCATGTGAAAGAGCGAA 59.258 45.455 0.00 0.00 0.00 4.70
734 738 2.289382 TGTTAGCCATGTGAAAGAGCGA 60.289 45.455 0.00 0.00 0.00 4.93
735 739 2.076100 TGTTAGCCATGTGAAAGAGCG 58.924 47.619 0.00 0.00 0.00 5.03
736 740 4.708726 AATGTTAGCCATGTGAAAGAGC 57.291 40.909 0.00 0.00 32.82 4.09
737 741 6.506500 AGAAATGTTAGCCATGTGAAAGAG 57.493 37.500 0.00 0.00 32.82 2.85
738 742 6.899393 AAGAAATGTTAGCCATGTGAAAGA 57.101 33.333 0.00 0.00 32.82 2.52
739 743 7.274250 GCTTAAGAAATGTTAGCCATGTGAAAG 59.726 37.037 6.67 0.00 32.82 2.62
740 744 7.090173 GCTTAAGAAATGTTAGCCATGTGAAA 58.910 34.615 6.67 0.00 32.82 2.69
741 745 6.208402 TGCTTAAGAAATGTTAGCCATGTGAA 59.792 34.615 6.67 0.00 32.82 3.18
742 746 5.709631 TGCTTAAGAAATGTTAGCCATGTGA 59.290 36.000 6.67 0.00 32.82 3.58
743 747 5.953183 TGCTTAAGAAATGTTAGCCATGTG 58.047 37.500 6.67 0.00 32.82 3.21
744 748 6.588719 TTGCTTAAGAAATGTTAGCCATGT 57.411 33.333 6.67 0.00 32.82 3.21
745 749 7.814107 TCTTTTGCTTAAGAAATGTTAGCCATG 59.186 33.333 6.67 0.00 32.82 3.66
746 750 7.895759 TCTTTTGCTTAAGAAATGTTAGCCAT 58.104 30.769 6.67 0.00 31.45 4.40
747 751 7.283625 TCTTTTGCTTAAGAAATGTTAGCCA 57.716 32.000 6.67 0.00 31.45 4.75
748 752 8.082242 TCTTCTTTTGCTTAAGAAATGTTAGCC 58.918 33.333 6.67 0.00 42.01 3.93
749 753 9.463443 TTCTTCTTTTGCTTAAGAAATGTTAGC 57.537 29.630 6.67 0.00 42.01 3.09
753 757 9.521503 GTTCTTCTTCTTTTGCTTAAGAAATGT 57.478 29.630 6.67 0.00 42.01 2.71
754 758 9.520204 TGTTCTTCTTCTTTTGCTTAAGAAATG 57.480 29.630 6.67 6.77 42.01 2.32
755 759 9.521503 GTGTTCTTCTTCTTTTGCTTAAGAAAT 57.478 29.630 6.67 0.00 42.01 2.17
756 760 8.519526 TGTGTTCTTCTTCTTTTGCTTAAGAAA 58.480 29.630 6.67 0.00 42.01 2.52
757 761 8.050778 TGTGTTCTTCTTCTTTTGCTTAAGAA 57.949 30.769 6.67 11.56 40.76 2.52
758 762 7.624360 TGTGTTCTTCTTCTTTTGCTTAAGA 57.376 32.000 6.67 0.00 32.50 2.10
759 763 7.917505 ACATGTGTTCTTCTTCTTTTGCTTAAG 59.082 33.333 0.00 0.00 0.00 1.85
760 764 7.701924 CACATGTGTTCTTCTTCTTTTGCTTAA 59.298 33.333 18.03 0.00 0.00 1.85
761 765 7.195646 CACATGTGTTCTTCTTCTTTTGCTTA 58.804 34.615 18.03 0.00 0.00 3.09
762 766 6.038356 CACATGTGTTCTTCTTCTTTTGCTT 58.962 36.000 18.03 0.00 0.00 3.91
763 767 5.450965 CCACATGTGTTCTTCTTCTTTTGCT 60.451 40.000 23.79 0.00 0.00 3.91
1021 1046 1.382009 GGAGGGTGAGGAGGAGGAC 60.382 68.421 0.00 0.00 0.00 3.85
1022 1047 0.254154 TAGGAGGGTGAGGAGGAGGA 60.254 60.000 0.00 0.00 0.00 3.71
1023 1048 0.863956 ATAGGAGGGTGAGGAGGAGG 59.136 60.000 0.00 0.00 0.00 4.30
1095 1123 2.282958 AAGTCGAGGCCGGACTGA 60.283 61.111 26.59 10.52 36.24 3.41
1188 1216 1.970114 GCCGATGATGGGGATGCTG 60.970 63.158 0.00 0.00 0.00 4.41
1389 1417 3.096461 CGTCAGTCGTATTACCTGAACG 58.904 50.000 4.87 7.19 37.01 3.95
1390 1418 3.432782 CCGTCAGTCGTATTACCTGAAC 58.567 50.000 4.87 1.21 37.01 3.18
1406 1434 1.927487 TTAGTACCTGAAGCCCGTCA 58.073 50.000 0.00 0.00 0.00 4.35
1524 1583 6.846350 AGAGATGAAAATTTCTTTACAGCCG 58.154 36.000 7.29 0.00 0.00 5.52
1721 1780 2.232941 CTGCAGGCTGACCAAATTGAAT 59.767 45.455 20.86 0.00 39.06 2.57
1748 1807 6.694411 GCTAAAATGTCATATGCTGGTCAAAG 59.306 38.462 0.00 0.00 0.00 2.77
1798 1858 3.611766 ATTTGTGAACGGAGGGAGTAG 57.388 47.619 0.00 0.00 0.00 2.57
1801 1861 5.671493 ACTTATATTTGTGAACGGAGGGAG 58.329 41.667 0.00 0.00 0.00 4.30
1802 1862 5.687166 ACTTATATTTGTGAACGGAGGGA 57.313 39.130 0.00 0.00 0.00 4.20
1803 1863 5.646360 ACAACTTATATTTGTGAACGGAGGG 59.354 40.000 0.55 0.00 35.82 4.30
1804 1864 6.737254 ACAACTTATATTTGTGAACGGAGG 57.263 37.500 0.55 0.00 35.82 4.30
1821 1881 9.083080 CGATTCAGGAAAAAGTTAAAACAACTT 57.917 29.630 0.00 0.00 41.82 2.66
1823 1883 8.623310 TCGATTCAGGAAAAAGTTAAAACAAC 57.377 30.769 0.00 0.00 0.00 3.32
1824 1884 9.810545 ATTCGATTCAGGAAAAAGTTAAAACAA 57.189 25.926 0.00 0.00 0.00 2.83
1825 1885 9.243637 CATTCGATTCAGGAAAAAGTTAAAACA 57.756 29.630 0.00 0.00 0.00 2.83
1837 1897 8.021396 CGTGTCTATATACATTCGATTCAGGAA 58.979 37.037 0.00 0.00 0.00 3.36
1838 1898 7.174426 ACGTGTCTATATACATTCGATTCAGGA 59.826 37.037 7.85 0.00 0.00 3.86
1839 1899 7.306213 ACGTGTCTATATACATTCGATTCAGG 58.694 38.462 7.85 0.00 0.00 3.86
1840 1900 8.729529 AACGTGTCTATATACATTCGATTCAG 57.270 34.615 7.85 0.00 0.00 3.02
1841 1901 9.524106 AAAACGTGTCTATATACATTCGATTCA 57.476 29.630 7.85 0.00 0.00 2.57
1845 1905 9.442033 CACTAAAACGTGTCTATATACATTCGA 57.558 33.333 7.85 0.00 0.00 3.71
1846 1906 9.229784 ACACTAAAACGTGTCTATATACATTCG 57.770 33.333 0.00 0.00 44.32 3.34
1848 1908 9.865321 ACACACTAAAACGTGTCTATATACATT 57.135 29.630 0.00 0.00 45.74 2.71
1849 1909 9.865321 AACACACTAAAACGTGTCTATATACAT 57.135 29.630 0.00 0.00 45.74 2.29
1850 1910 9.695526 AAACACACTAAAACGTGTCTATATACA 57.304 29.630 0.00 0.00 45.74 2.29
1851 1911 9.947897 CAAACACACTAAAACGTGTCTATATAC 57.052 33.333 0.00 0.00 45.74 1.47
1852 1912 9.695526 ACAAACACACTAAAACGTGTCTATATA 57.304 29.630 0.00 0.00 45.74 0.86
1853 1913 8.597662 ACAAACACACTAAAACGTGTCTATAT 57.402 30.769 0.00 0.00 45.74 0.86
1854 1914 8.422973 AACAAACACACTAAAACGTGTCTATA 57.577 30.769 0.00 0.00 45.74 1.31
1855 1915 6.913873 ACAAACACACTAAAACGTGTCTAT 57.086 33.333 0.00 0.00 45.74 1.98
1856 1916 6.368243 TGAACAAACACACTAAAACGTGTCTA 59.632 34.615 0.00 0.00 45.74 2.59
1857 1917 5.179742 TGAACAAACACACTAAAACGTGTCT 59.820 36.000 0.00 0.00 45.74 3.41
1858 1918 5.282076 GTGAACAAACACACTAAAACGTGTC 59.718 40.000 0.00 0.00 45.74 3.67
1860 1920 5.387279 AGTGAACAAACACACTAAAACGTG 58.613 37.500 0.00 0.00 44.06 4.49
1861 1921 5.179742 TGAGTGAACAAACACACTAAAACGT 59.820 36.000 0.00 0.00 45.54 3.99
1862 1922 5.623335 TGAGTGAACAAACACACTAAAACG 58.377 37.500 0.00 0.00 45.54 3.60
1863 1923 8.460831 AAATGAGTGAACAAACACACTAAAAC 57.539 30.769 0.00 0.00 45.54 2.43
1864 1924 8.300286 TGAAATGAGTGAACAAACACACTAAAA 58.700 29.630 0.00 0.00 45.54 1.52
1865 1925 7.821652 TGAAATGAGTGAACAAACACACTAAA 58.178 30.769 0.00 0.00 45.54 1.85
1866 1926 7.384439 TGAAATGAGTGAACAAACACACTAA 57.616 32.000 0.00 0.00 45.54 2.24
1867 1927 6.993786 TGAAATGAGTGAACAAACACACTA 57.006 33.333 0.00 0.00 45.54 2.74
1869 1929 6.198966 GGATTGAAATGAGTGAACAAACACAC 59.801 38.462 0.00 0.00 42.45 3.82
1870 1930 6.272318 GGATTGAAATGAGTGAACAAACACA 58.728 36.000 0.00 0.00 42.45 3.72
1871 1931 5.399301 CGGATTGAAATGAGTGAACAAACAC 59.601 40.000 0.00 0.00 40.60 3.32
1872 1932 5.067153 ACGGATTGAAATGAGTGAACAAACA 59.933 36.000 0.00 0.00 0.00 2.83
1873 1933 5.519722 ACGGATTGAAATGAGTGAACAAAC 58.480 37.500 0.00 0.00 0.00 2.93
1874 1934 5.766150 ACGGATTGAAATGAGTGAACAAA 57.234 34.783 0.00 0.00 0.00 2.83
1875 1935 6.429692 ACATACGGATTGAAATGAGTGAACAA 59.570 34.615 0.00 0.00 0.00 2.83
1876 1936 5.937540 ACATACGGATTGAAATGAGTGAACA 59.062 36.000 0.00 0.00 0.00 3.18
1877 1937 6.422776 ACATACGGATTGAAATGAGTGAAC 57.577 37.500 0.00 0.00 0.00 3.18
1878 1938 7.327975 ACTACATACGGATTGAAATGAGTGAA 58.672 34.615 0.00 0.00 0.00 3.18
1879 1939 6.873997 ACTACATACGGATTGAAATGAGTGA 58.126 36.000 0.00 0.00 0.00 3.41
1880 1940 6.201044 GGACTACATACGGATTGAAATGAGTG 59.799 42.308 0.00 0.00 0.00 3.51
1881 1941 6.127168 TGGACTACATACGGATTGAAATGAGT 60.127 38.462 0.00 0.00 0.00 3.41
1882 1942 6.280643 TGGACTACATACGGATTGAAATGAG 58.719 40.000 0.00 0.00 0.00 2.90
1883 1943 6.228616 TGGACTACATACGGATTGAAATGA 57.771 37.500 0.00 0.00 0.00 2.57
1884 1944 8.777865 ATATGGACTACATACGGATTGAAATG 57.222 34.615 0.00 0.00 44.41 2.32
1885 1945 9.219603 CAATATGGACTACATACGGATTGAAAT 57.780 33.333 0.00 0.00 44.41 2.17
1886 1946 8.425703 TCAATATGGACTACATACGGATTGAAA 58.574 33.333 0.00 0.00 44.41 2.69
1887 1947 7.958088 TCAATATGGACTACATACGGATTGAA 58.042 34.615 0.00 0.00 44.41 2.69
1888 1948 7.533289 TCAATATGGACTACATACGGATTGA 57.467 36.000 0.00 0.00 44.41 2.57
1889 1949 8.601845 TTTCAATATGGACTACATACGGATTG 57.398 34.615 0.00 0.00 44.41 2.67
1893 1953 9.314321 GGATATTTCAATATGGACTACATACGG 57.686 37.037 0.00 0.00 44.41 4.02
1894 1954 9.869757 TGGATATTTCAATATGGACTACATACG 57.130 33.333 0.00 0.00 44.41 3.06
1918 1978 6.255453 CCGTTGCCAAATATAAGATGTTTTGG 59.745 38.462 8.54 8.54 46.97 3.28
1919 1979 7.032580 TCCGTTGCCAAATATAAGATGTTTTG 58.967 34.615 0.00 0.00 0.00 2.44
1920 1980 7.164230 TCCGTTGCCAAATATAAGATGTTTT 57.836 32.000 0.00 0.00 0.00 2.43
1921 1981 6.183360 CCTCCGTTGCCAAATATAAGATGTTT 60.183 38.462 0.00 0.00 0.00 2.83
1922 1982 5.299279 CCTCCGTTGCCAAATATAAGATGTT 59.701 40.000 0.00 0.00 0.00 2.71
1923 1983 4.821805 CCTCCGTTGCCAAATATAAGATGT 59.178 41.667 0.00 0.00 0.00 3.06
1924 1984 4.320494 GCCTCCGTTGCCAAATATAAGATG 60.320 45.833 0.00 0.00 0.00 2.90
1925 1985 3.821033 GCCTCCGTTGCCAAATATAAGAT 59.179 43.478 0.00 0.00 0.00 2.40
1926 1986 3.211045 GCCTCCGTTGCCAAATATAAGA 58.789 45.455 0.00 0.00 0.00 2.10
1927 1987 2.948979 TGCCTCCGTTGCCAAATATAAG 59.051 45.455 0.00 0.00 0.00 1.73
1928 1988 2.948979 CTGCCTCCGTTGCCAAATATAA 59.051 45.455 0.00 0.00 0.00 0.98
1929 1989 2.092646 ACTGCCTCCGTTGCCAAATATA 60.093 45.455 0.00 0.00 0.00 0.86
1930 1990 1.340991 ACTGCCTCCGTTGCCAAATAT 60.341 47.619 0.00 0.00 0.00 1.28
1931 1991 0.037590 ACTGCCTCCGTTGCCAAATA 59.962 50.000 0.00 0.00 0.00 1.40
1932 1992 0.037590 TACTGCCTCCGTTGCCAAAT 59.962 50.000 0.00 0.00 0.00 2.32
1933 1993 0.605319 CTACTGCCTCCGTTGCCAAA 60.605 55.000 0.00 0.00 0.00 3.28
1934 1994 1.003839 CTACTGCCTCCGTTGCCAA 60.004 57.895 0.00 0.00 0.00 4.52
1935 1995 1.476845 TTCTACTGCCTCCGTTGCCA 61.477 55.000 0.00 0.00 0.00 4.92
1936 1996 0.107654 ATTCTACTGCCTCCGTTGCC 60.108 55.000 0.00 0.00 0.00 4.52
1937 1997 1.134670 AGATTCTACTGCCTCCGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
1938 1998 2.969628 AGATTCTACTGCCTCCGTTG 57.030 50.000 0.00 0.00 0.00 4.10
1939 1999 4.024670 AGTTAGATTCTACTGCCTCCGTT 58.975 43.478 0.00 0.00 0.00 4.44
1940 2000 3.633418 AGTTAGATTCTACTGCCTCCGT 58.367 45.455 0.00 0.00 0.00 4.69
1941 2001 5.968528 ATAGTTAGATTCTACTGCCTCCG 57.031 43.478 0.00 0.00 0.00 4.63
1942 2002 7.309316 GGTGTATAGTTAGATTCTACTGCCTCC 60.309 44.444 0.00 0.00 0.00 4.30
1943 2003 7.449086 AGGTGTATAGTTAGATTCTACTGCCTC 59.551 40.741 0.00 0.00 0.00 4.70
1944 2004 7.299134 AGGTGTATAGTTAGATTCTACTGCCT 58.701 38.462 0.00 0.00 0.00 4.75
1945 2005 7.527568 AGGTGTATAGTTAGATTCTACTGCC 57.472 40.000 0.00 0.00 0.00 4.85
1946 2006 9.504708 TCTAGGTGTATAGTTAGATTCTACTGC 57.495 37.037 0.00 0.00 0.00 4.40
1955 2015 7.344134 TGCTTCTGTCTAGGTGTATAGTTAGA 58.656 38.462 0.00 0.00 0.00 2.10
1994 2054 7.414762 GCATTTCTAAGTTACCTTGCCGAAATA 60.415 37.037 0.00 0.00 34.84 1.40
2002 2062 6.715464 CATACGGCATTTCTAAGTTACCTTG 58.285 40.000 0.00 0.00 31.89 3.61
2022 2082 7.376866 CAGACCAAAATGATTTATGACGCATAC 59.623 37.037 0.00 0.00 0.00 2.39
2042 2104 6.939730 TGAACAACAAGCTTATTATCAGACCA 59.060 34.615 0.00 0.00 0.00 4.02
2043 2105 7.377766 TGAACAACAAGCTTATTATCAGACC 57.622 36.000 0.00 0.00 0.00 3.85
2044 2106 9.846248 AAATGAACAACAAGCTTATTATCAGAC 57.154 29.630 0.00 0.00 0.00 3.51
2051 2113 6.815089 TGTCCAAATGAACAACAAGCTTATT 58.185 32.000 0.00 0.00 0.00 1.40
2135 2197 9.802039 TGTAATTTGAATCCAGGTACTTAGTTT 57.198 29.630 0.00 0.00 34.60 2.66
2142 2204 5.594317 AGGCATGTAATTTGAATCCAGGTAC 59.406 40.000 0.00 0.00 0.00 3.34
2155 2217 4.888326 TTGCAAAGGAAGGCATGTAATT 57.112 36.364 0.00 0.00 40.17 1.40
2338 2401 5.745227 ACACCTTGTACCTTCTTCCATATG 58.255 41.667 0.00 0.00 0.00 1.78
2427 2490 7.378181 ACAAATAGTTTGAGCGATCCATTTTT 58.622 30.769 9.21 0.00 43.26 1.94
2495 2558 3.659183 AACCAAGAGGATCCTCCATTG 57.341 47.619 33.81 29.49 43.70 2.82
2554 2617 7.094762 CCCTATTCAAAGGAGTTGACAAAGTAC 60.095 40.741 0.00 0.00 46.09 2.73
2602 2667 7.959689 AGTTCACTTCAGATACATATCATGC 57.040 36.000 1.88 0.00 35.17 4.06
2758 2824 2.161609 CACCCTCCACTATTTTGTTCGC 59.838 50.000 0.00 0.00 0.00 4.70
3037 3103 4.527509 TGAAGTAGAGAGCTGAAACAGG 57.472 45.455 0.00 0.00 31.21 4.00
3200 3266 5.604231 TCAATCAGAATAGGCTCACTGGTAT 59.396 40.000 12.93 1.77 0.00 2.73
3443 3509 6.280643 TCATCAGAACCCAATACGATTACTG 58.719 40.000 0.00 0.00 0.00 2.74
3470 3536 4.018490 TGATATGCATGCAACTGGAACTT 58.982 39.130 26.68 7.21 0.00 2.66
3551 3622 9.832445 TGTTATTTCACTCCAATAGATTACCTC 57.168 33.333 0.00 0.00 0.00 3.85
3683 5057 8.815565 TTCCAATTATCCAATACAGCAAAGTA 57.184 30.769 0.00 0.00 0.00 2.24
3824 5199 6.715264 ACTCAACCTTTCCAACGAGATTATTT 59.285 34.615 0.00 0.00 0.00 1.40
3833 5208 9.471084 AAATAATTTAACTCAACCTTTCCAACG 57.529 29.630 0.00 0.00 0.00 4.10
4047 5424 4.574674 AGACATGAGGTAGCAATTTCCA 57.425 40.909 0.00 0.00 0.00 3.53
4101 5492 5.186797 TGTTATAAAATGGTGCCCCTTCAAG 59.813 40.000 0.00 0.00 0.00 3.02
4109 5500 6.037062 GGCATTTTCTGTTATAAAATGGTGCC 59.963 38.462 17.97 13.05 46.86 5.01
4274 5666 7.011389 TCTGACAATTTAACAGGATTAGCATCG 59.989 37.037 0.00 0.00 33.19 3.84
4315 5707 4.306600 GGCACGAACAAATTTTTCAGGAT 58.693 39.130 0.00 0.00 0.00 3.24
4398 5790 7.609097 TGAAGTGAGGATATAAGCATCTCTT 57.391 36.000 7.30 7.30 38.79 2.85
4437 5829 5.227569 TGAAGGAAACATCAGAGCTAACA 57.772 39.130 0.00 0.00 32.17 2.41
4486 5878 0.947244 CTGACTGGTCCAACAACTGC 59.053 55.000 0.00 0.00 0.00 4.40
4487 5879 0.947244 GCTGACTGGTCCAACAACTG 59.053 55.000 0.00 0.00 0.00 3.16
4488 5880 0.546122 TGCTGACTGGTCCAACAACT 59.454 50.000 0.00 0.00 0.00 3.16
4498 5893 0.036010 ACCGGATCTTTGCTGACTGG 60.036 55.000 9.46 0.00 0.00 4.00
4612 6007 5.779529 TGCCGGACCTTAGTTTATACTAG 57.220 43.478 5.05 0.00 38.09 2.57
4638 6047 6.672657 AGGGGTGATTACTTACAGACTACAAT 59.327 38.462 0.00 0.00 0.00 2.71
4753 6179 2.667473 ACATAGTGTTACAGCGGGTC 57.333 50.000 0.00 0.00 0.00 4.46
4757 6183 7.490079 TCCAGTATAAAACATAGTGTTACAGCG 59.510 37.037 0.00 0.00 40.14 5.18
4805 6231 2.158957 AGAACCGCGGATACATCACAAT 60.159 45.455 35.90 0.00 0.00 2.71
4818 6244 1.934589 TGTCATATGGAAGAACCGCG 58.065 50.000 0.00 0.00 42.61 6.46
4848 6274 3.125658 ACATTACGATTACAAACGGCCAC 59.874 43.478 2.24 0.00 0.00 5.01
4849 6275 3.336468 ACATTACGATTACAAACGGCCA 58.664 40.909 2.24 0.00 0.00 5.36
4850 6276 3.542680 CGACATTACGATTACAAACGGCC 60.543 47.826 0.00 0.00 35.09 6.13
4860 6392 3.220507 TGACCGAACGACATTACGATT 57.779 42.857 0.00 0.00 37.03 3.34
4895 6427 5.975693 TTGTCAATTGTACTGGGAATTCC 57.024 39.130 16.74 16.74 0.00 3.01
4899 6431 8.739039 CATTATCTTTGTCAATTGTACTGGGAA 58.261 33.333 5.13 0.00 0.00 3.97
5032 6566 7.634671 TGTCAGTGATCAATATTTCAGCATT 57.365 32.000 0.00 0.00 0.00 3.56
5104 6638 3.149196 GGTGCAACAGAATCCTGAAGAA 58.851 45.455 0.00 0.00 43.02 2.52
5113 6647 2.104967 CATCCATGGGTGCAACAGAAT 58.895 47.619 13.22 0.00 39.98 2.40
5134 6674 1.028868 GGCTGAGGAAGGTGATGCAC 61.029 60.000 0.00 0.00 0.00 4.57
5254 6794 1.486726 GGGATCAAGGACGAGGACAAT 59.513 52.381 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.