Multiple sequence alignment - TraesCS5A01G259100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G259100 chr5A 100.000 8710 0 0 1 8710 473617444 473626153 0.000000e+00 16085.0
1 TraesCS5A01G259100 chr5A 85.029 2251 288 32 2328 4545 473417927 473420161 0.000000e+00 2244.0
2 TraesCS5A01G259100 chr5A 83.509 2274 296 53 2328 4556 38779281 38777042 0.000000e+00 2049.0
3 TraesCS5A01G259100 chr5A 82.819 2299 324 43 2328 4574 473456918 473459197 0.000000e+00 1991.0
4 TraesCS5A01G259100 chr5A 88.489 556 60 4 5328 5881 473429168 473429721 0.000000e+00 669.0
5 TraesCS5A01G259100 chr5A 85.424 590 72 9 5204 5790 38776798 38776220 1.250000e-167 601.0
6 TraesCS5A01G259100 chr5A 81.014 769 108 28 3855 4599 436287996 436288750 2.110000e-160 577.0
7 TraesCS5A01G259100 chr5A 81.494 589 76 22 6333 6907 38775673 38775104 3.710000e-123 453.0
8 TraesCS5A01G259100 chr5A 94.194 155 9 0 4600 4754 605238954 605239108 4.060000e-58 237.0
9 TraesCS5A01G259100 chr5A 94.667 150 8 0 4605 4754 606537997 606537848 5.260000e-57 233.0
10 TraesCS5A01G259100 chr5A 94.000 150 9 0 4605 4754 577730546 577730695 2.450000e-55 228.0
11 TraesCS5A01G259100 chr5A 95.935 123 5 0 7975 8097 473431586 473431708 5.330000e-47 200.0
12 TraesCS5A01G259100 chr5A 96.364 55 2 0 7189 7243 473430897 473430951 3.350000e-14 91.6
13 TraesCS5A01G259100 chr5D 97.789 3302 64 8 1310 4604 370837438 370840737 0.000000e+00 5685.0
14 TraesCS5A01G259100 chr5D 95.154 2951 74 18 4752 7686 370840726 370843623 0.000000e+00 4593.0
15 TraesCS5A01G259100 chr5D 85.322 2255 280 32 2328 4546 370826669 370828908 0.000000e+00 2283.0
16 TraesCS5A01G259100 chr5D 93.964 1110 33 7 1 1083 370836151 370837253 0.000000e+00 1648.0
17 TraesCS5A01G259100 chr5D 85.455 1540 198 18 2328 3855 49151450 49149925 0.000000e+00 1580.0
18 TraesCS5A01G259100 chr5D 94.044 1041 31 14 7689 8709 370843662 370844691 0.000000e+00 1550.0
19 TraesCS5A01G259100 chr5D 81.846 964 129 32 5985 6930 49148197 49147262 0.000000e+00 769.0
20 TraesCS5A01G259100 chr5D 88.930 542 59 1 5328 5868 370829165 370829706 0.000000e+00 667.0
21 TraesCS5A01G259100 chr5D 85.009 587 77 5 5207 5790 49148949 49148371 3.500000e-163 586.0
22 TraesCS5A01G259100 chr5D 82.203 708 94 28 3853 4547 49149891 49149203 1.630000e-161 580.0
23 TraesCS5A01G259100 chr5D 80.649 770 113 26 3855 4599 334892020 334892778 1.640000e-156 564.0
24 TraesCS5A01G259100 chr5D 78.661 717 124 16 560 1270 168636316 168635623 4.800000e-122 449.0
25 TraesCS5A01G259100 chr5D 96.111 180 7 0 1064 1243 370837264 370837443 2.380000e-75 294.0
26 TraesCS5A01G259100 chr5D 79.747 395 63 8 910 1300 315691113 315691494 4.010000e-68 270.0
27 TraesCS5A01G259100 chr5D 95.270 148 4 2 7975 8119 370831841 370831988 1.890000e-56 231.0
28 TraesCS5A01G259100 chr5D 83.824 136 9 10 7192 7323 370830938 370831064 5.520000e-22 117.0
29 TraesCS5A01G259100 chr5B 93.804 1388 64 14 3225 4604 440227728 440229101 0.000000e+00 2067.0
30 TraesCS5A01G259100 chr5B 96.112 1183 34 7 5220 6399 440234799 440235972 0.000000e+00 1919.0
31 TraesCS5A01G259100 chr5B 90.812 1317 76 18 7153 8448 440236770 440238062 0.000000e+00 1720.0
32 TraesCS5A01G259100 chr5B 86.879 1509 181 11 2356 3850 440210823 440212328 0.000000e+00 1674.0
33 TraesCS5A01G259100 chr5B 85.537 1535 200 16 2329 3852 440184917 440186440 0.000000e+00 1585.0
34 TraesCS5A01G259100 chr5B 84.501 1542 212 19 2328 3857 51861070 51859544 0.000000e+00 1498.0
35 TraesCS5A01G259100 chr5B 86.288 1269 128 26 1 1246 440224799 440226044 0.000000e+00 1338.0
36 TraesCS5A01G259100 chr5B 94.707 699 32 3 6395 7090 440236051 440236747 0.000000e+00 1081.0
37 TraesCS5A01G259100 chr5B 81.145 1013 133 33 5977 6952 440214135 440215126 0.000000e+00 760.0
38 TraesCS5A01G259100 chr5B 88.095 588 68 2 5314 5899 440213462 440214049 0.000000e+00 697.0
39 TraesCS5A01G259100 chr5B 89.711 554 34 12 1772 2322 440226827 440227360 0.000000e+00 686.0
40 TraesCS5A01G259100 chr5B 80.382 943 144 28 5985 6914 51857817 51856903 0.000000e+00 678.0
41 TraesCS5A01G259100 chr5B 89.130 506 45 6 1278 1775 440226044 440226547 9.600000e-174 621.0
42 TraesCS5A01G259100 chr5B 83.636 660 102 4 5294 5948 440188200 440188858 4.470000e-172 616.0
43 TraesCS5A01G259100 chr5B 85.860 587 72 6 5207 5790 51858570 51857992 1.610000e-171 614.0
44 TraesCS5A01G259100 chr5B 81.510 768 108 24 3855 4604 440212366 440213117 1.250000e-167 601.0
45 TraesCS5A01G259100 chr5B 82.627 708 92 27 3853 4547 51859512 51858823 1.620000e-166 597.0
46 TraesCS5A01G259100 chr5B 80.779 770 112 26 3855 4599 391754659 391755417 3.530000e-158 569.0
47 TraesCS5A01G259100 chr5B 91.733 375 22 6 7242 7615 693758159 693757793 6.030000e-141 512.0
48 TraesCS5A01G259100 chr5B 86.486 407 40 7 4805 5209 440234343 440234736 4.830000e-117 433.0
49 TraesCS5A01G259100 chr5B 83.763 388 34 15 7242 7609 588288239 588288617 3.010000e-89 340.0
50 TraesCS5A01G259100 chr5B 91.770 243 17 2 8470 8709 440238147 440238389 1.400000e-87 335.0
51 TraesCS5A01G259100 chr5B 98.052 154 3 0 7975 8128 440216001 440216154 1.440000e-67 268.0
52 TraesCS5A01G259100 chr1B 91.304 368 25 4 7242 7609 494467449 494467809 6.070000e-136 496.0
53 TraesCS5A01G259100 chr1B 77.888 805 135 24 514 1300 544723555 544724334 2.220000e-125 460.0
54 TraesCS5A01G259100 chr1B 77.176 517 95 14 625 1131 143040034 143040537 6.660000e-71 279.0
55 TraesCS5A01G259100 chr3A 77.945 798 143 25 521 1300 55026003 55025221 1.320000e-127 468.0
56 TraesCS5A01G259100 chr3A 79.024 410 70 15 782 1187 30353537 30353934 5.180000e-67 267.0
57 TraesCS5A01G259100 chr6B 88.204 373 27 8 7242 7613 344996185 344995829 6.250000e-116 429.0
58 TraesCS5A01G259100 chr6B 92.920 113 7 1 7497 7609 16472742 16472631 7.000000e-36 163.0
59 TraesCS5A01G259100 chr6B 92.035 113 8 1 7497 7609 445510430 445510541 3.260000e-34 158.0
60 TraesCS5A01G259100 chr6B 88.889 99 11 0 7744 7842 344995828 344995730 1.190000e-23 122.0
61 TraesCS5A01G259100 chr6B 88.542 96 9 2 7242 7337 16473731 16473638 1.990000e-21 115.0
62 TraesCS5A01G259100 chr1A 78.267 704 119 17 613 1300 500339990 500340675 1.050000e-113 422.0
63 TraesCS5A01G259100 chr7D 77.473 728 127 30 583 1295 21854031 21854736 1.360000e-107 401.0
64 TraesCS5A01G259100 chr7D 76.316 760 134 28 518 1269 215788968 215789689 1.790000e-96 364.0
65 TraesCS5A01G259100 chr7D 74.589 791 156 31 518 1299 207964600 207965354 1.100000e-78 305.0
66 TraesCS5A01G259100 chr7D 92.053 151 10 1 4605 4755 155299231 155299083 2.460000e-50 211.0
67 TraesCS5A01G259100 chr2B 76.732 765 125 35 560 1300 359339166 359338431 2.300000e-100 377.0
68 TraesCS5A01G259100 chr2B 77.494 391 69 9 913 1300 254233270 254232896 5.300000e-52 217.0
69 TraesCS5A01G259100 chr2A 76.511 728 137 21 583 1301 595026909 595027611 4.970000e-97 366.0
70 TraesCS5A01G259100 chr2A 79.389 393 62 9 913 1300 213091015 213090637 8.670000e-65 259.0
71 TraesCS5A01G259100 chr1D 79.839 496 79 17 790 1279 307668258 307668738 8.370000e-90 342.0
72 TraesCS5A01G259100 chr2D 76.165 558 118 14 527 1075 353340740 353340189 6.660000e-71 279.0
73 TraesCS5A01G259100 chr3B 76.789 517 88 20 790 1300 704403464 704402974 2.410000e-65 261.0
74 TraesCS5A01G259100 chrUn 92.053 151 12 0 4605 4755 92772310 92772460 6.850000e-51 213.0
75 TraesCS5A01G259100 chr4B 92.920 113 6 2 7497 7609 581609126 581609016 7.000000e-36 163.0
76 TraesCS5A01G259100 chr4B 92.105 114 8 1 7497 7610 356001188 356001300 9.050000e-35 159.0
77 TraesCS5A01G259100 chr4B 92.537 67 5 0 7271 7337 500667004 500667070 7.200000e-16 97.1
78 TraesCS5A01G259100 chr4A 87.597 129 14 2 7242 7370 726526321 726526447 1.960000e-31 148.0
79 TraesCS5A01G259100 chr4A 91.111 90 4 1 7370 7459 726542388 726542473 1.540000e-22 119.0
80 TraesCS5A01G259100 chr6D 96.875 32 1 0 521 552 277145784 277145815 4.000000e-03 54.7
81 TraesCS5A01G259100 chr6A 96.875 32 1 0 521 552 398176176 398176145 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G259100 chr5A 473617444 473626153 8709 False 16085.000000 16085 100.000000 1 8710 1 chr5A.!!$F4 8709
1 TraesCS5A01G259100 chr5A 473417927 473420161 2234 False 2244.000000 2244 85.029000 2328 4545 1 chr5A.!!$F2 2217
2 TraesCS5A01G259100 chr5A 473456918 473459197 2279 False 1991.000000 1991 82.819000 2328 4574 1 chr5A.!!$F3 2246
3 TraesCS5A01G259100 chr5A 38775104 38779281 4177 True 1034.333333 2049 83.475667 2328 6907 3 chr5A.!!$R2 4579
4 TraesCS5A01G259100 chr5A 436287996 436288750 754 False 577.000000 577 81.014000 3855 4599 1 chr5A.!!$F1 744
5 TraesCS5A01G259100 chr5A 473429168 473431708 2540 False 320.200000 669 93.596000 5328 8097 3 chr5A.!!$F7 2769
6 TraesCS5A01G259100 chr5D 370836151 370844691 8540 False 2754.000000 5685 95.412400 1 8709 5 chr5D.!!$F4 8708
7 TraesCS5A01G259100 chr5D 49147262 49151450 4188 True 878.750000 1580 83.628250 2328 6930 4 chr5D.!!$R2 4602
8 TraesCS5A01G259100 chr5D 370826669 370831988 5319 False 824.500000 2283 88.336500 2328 8119 4 chr5D.!!$F3 5791
9 TraesCS5A01G259100 chr5D 334892020 334892778 758 False 564.000000 564 80.649000 3855 4599 1 chr5D.!!$F2 744
10 TraesCS5A01G259100 chr5D 168635623 168636316 693 True 449.000000 449 78.661000 560 1270 1 chr5D.!!$R1 710
11 TraesCS5A01G259100 chr5B 440224799 440229101 4302 False 1178.000000 2067 89.733250 1 4604 4 chr5B.!!$F5 4603
12 TraesCS5A01G259100 chr5B 440184917 440188858 3941 False 1100.500000 1585 84.586500 2329 5948 2 chr5B.!!$F3 3619
13 TraesCS5A01G259100 chr5B 440234343 440238389 4046 False 1097.600000 1919 91.977400 4805 8709 5 chr5B.!!$F6 3904
14 TraesCS5A01G259100 chr5B 51856903 51861070 4167 True 846.750000 1498 83.342500 2328 6914 4 chr5B.!!$R2 4586
15 TraesCS5A01G259100 chr5B 440210823 440216154 5331 False 800.000000 1674 87.136200 2356 8128 5 chr5B.!!$F4 5772
16 TraesCS5A01G259100 chr5B 391754659 391755417 758 False 569.000000 569 80.779000 3855 4599 1 chr5B.!!$F1 744
17 TraesCS5A01G259100 chr1B 544723555 544724334 779 False 460.000000 460 77.888000 514 1300 1 chr1B.!!$F3 786
18 TraesCS5A01G259100 chr1B 143040034 143040537 503 False 279.000000 279 77.176000 625 1131 1 chr1B.!!$F1 506
19 TraesCS5A01G259100 chr3A 55025221 55026003 782 True 468.000000 468 77.945000 521 1300 1 chr3A.!!$R1 779
20 TraesCS5A01G259100 chr1A 500339990 500340675 685 False 422.000000 422 78.267000 613 1300 1 chr1A.!!$F1 687
21 TraesCS5A01G259100 chr7D 21854031 21854736 705 False 401.000000 401 77.473000 583 1295 1 chr7D.!!$F1 712
22 TraesCS5A01G259100 chr7D 215788968 215789689 721 False 364.000000 364 76.316000 518 1269 1 chr7D.!!$F3 751
23 TraesCS5A01G259100 chr7D 207964600 207965354 754 False 305.000000 305 74.589000 518 1299 1 chr7D.!!$F2 781
24 TraesCS5A01G259100 chr2B 359338431 359339166 735 True 377.000000 377 76.732000 560 1300 1 chr2B.!!$R2 740
25 TraesCS5A01G259100 chr2A 595026909 595027611 702 False 366.000000 366 76.511000 583 1301 1 chr2A.!!$F1 718
26 TraesCS5A01G259100 chr2D 353340189 353340740 551 True 279.000000 279 76.165000 527 1075 1 chr2D.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 213 2.173143 TCACTGCTATGGAATGCATGGA 59.827 45.455 0.00 0.00 38.59 3.41 F
1032 1191 1.601903 TGCACGCTTCGTCAAAATCTT 59.398 42.857 0.00 0.00 38.32 2.40 F
1302 1509 0.250513 CGGGCTCTTTTGCTAGTCCT 59.749 55.000 0.00 0.00 35.23 3.85 F
2324 2879 4.200838 TGCGTCTTCTGTCAAATATCCA 57.799 40.909 0.00 0.00 0.00 3.41 F
3458 4031 2.158740 TCGGGTTTTGGACTGTGAATGA 60.159 45.455 0.00 0.00 0.00 2.57 F
4728 5491 0.179127 ATCGTCTGCATGTCGTCCAG 60.179 55.000 0.00 0.00 0.00 3.86 F
4759 5522 1.536766 GCATGTAGCACTGCTCAAACA 59.463 47.619 6.86 7.20 44.79 2.83 F
4760 5523 2.163010 GCATGTAGCACTGCTCAAACAT 59.837 45.455 6.86 9.32 44.79 2.71 F
5306 6913 2.824936 CCTGGAATGGTGTGCATTACAA 59.175 45.455 0.00 0.00 41.89 2.41 F
6310 8288 1.002069 ATTTGGGAGGTCAGCCATCA 58.998 50.000 0.00 0.00 37.19 3.07 F
6923 9045 0.471617 CCATAGGAGAGGTGGCCAAG 59.528 60.000 7.24 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1482 0.314935 CAAAAGAGCCCGTGCATTGT 59.685 50.000 0.00 0.00 41.13 2.71 R
2794 3364 1.803922 CGCTGCGATACGGAACACA 60.804 57.895 18.66 0.00 0.00 3.72 R
3003 3573 3.387699 TGACACTTGGATTGAGTGAGTCA 59.612 43.478 10.87 3.02 45.72 3.41 R
3525 4100 1.284785 TCTCCAGGCCAAATTACAGGG 59.715 52.381 5.01 0.00 0.00 4.45 R
5360 6970 0.322975 TTTCAGCTCCTCCTCTGCAC 59.677 55.000 0.00 0.00 0.00 4.57 R
5607 7220 5.339008 AGAAATCGTCAGGTGTAGCATAA 57.661 39.130 0.00 0.00 0.00 1.90 R
6047 7847 6.458888 GGTTTCTTCAAGCCTCTTGCATATAC 60.459 42.308 1.90 0.00 44.83 1.47 R
6083 7887 7.971168 CCGAGAGTAAATGTATGGATCTATGTC 59.029 40.741 1.10 0.00 0.00 3.06 R
6904 9026 0.471617 CTTGGCCACCTCTCCTATGG 59.528 60.000 3.88 0.00 36.51 2.74 R
7614 9814 1.259840 ATGAATGTTGGTGCAGGGCC 61.260 55.000 0.00 0.00 0.00 5.80 R
8462 10935 1.270550 CACCACATTTCTTGCTGGGTC 59.729 52.381 0.00 0.00 33.39 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 203 4.343526 AGATGGAGTACTTCACTGCTATGG 59.656 45.833 5.84 0.00 45.40 2.74
210 213 2.173143 TCACTGCTATGGAATGCATGGA 59.827 45.455 0.00 0.00 38.59 3.41
306 310 3.646637 AGGGGTTCATTATACTCCCTTCG 59.353 47.826 0.00 0.00 41.62 3.79
311 315 5.302313 GGTTCATTATACTCCCTTCGAGAGT 59.698 44.000 10.29 10.29 46.22 3.24
316 320 2.517998 ACTCCCTTCGAGAGTTAGCT 57.482 50.000 0.21 0.00 41.87 3.32
539 575 9.601217 CATCATGTATACCTACTAATAAAGGGC 57.399 37.037 0.00 0.00 37.18 5.19
595 704 6.144402 GCAAAAACTATGTGATGTTTCTGGTG 59.856 38.462 0.00 0.00 35.63 4.17
611 720 3.202818 TCTGGTGATCAATATGTTGCCCT 59.797 43.478 0.00 0.00 35.26 5.19
724 860 9.927668 CTTTTGTAGAAAACCCATGATATTTGT 57.072 29.630 0.00 0.00 0.00 2.83
916 1070 4.214971 GCAACCTCAATCTATAGCACATGG 59.785 45.833 0.00 0.00 0.00 3.66
979 1133 9.366216 GAAATAAGCACCTAATAAAAACCAAGG 57.634 33.333 0.00 0.00 0.00 3.61
1032 1191 1.601903 TGCACGCTTCGTCAAAATCTT 59.398 42.857 0.00 0.00 38.32 2.40
1034 1193 3.120683 TGCACGCTTCGTCAAAATCTTAG 60.121 43.478 0.00 0.00 38.32 2.18
1100 1297 3.118956 AGAGACGCCTTAGGATTGACAAG 60.119 47.826 0.69 0.00 0.00 3.16
1302 1509 0.250513 CGGGCTCTTTTGCTAGTCCT 59.749 55.000 0.00 0.00 35.23 3.85
1315 1522 5.599999 TGCTAGTCCTTCTCTAATTGGAC 57.400 43.478 0.00 0.00 46.67 4.02
1347 1555 7.880160 TGTTTTCTATGATCCCATTAGTTGG 57.120 36.000 0.00 0.00 46.00 3.77
1389 1597 6.899393 AGACCAAGCAAGATGTATGAAAAA 57.101 33.333 0.00 0.00 0.00 1.94
1417 1625 9.893305 ACAATAACGAAGAAGAAGGTTTATTTG 57.107 29.630 0.00 0.00 0.00 2.32
1566 1780 4.347000 GCAATCCCCTATTACAGTGGTCTA 59.653 45.833 0.00 0.00 0.00 2.59
1731 1945 7.814693 ATACTACCTCCATAACCAAGCATAT 57.185 36.000 0.00 0.00 0.00 1.78
1894 2392 5.749588 TCAAATGCACTTTCTTGTGATTGTG 59.250 36.000 0.00 0.00 40.12 3.33
2324 2879 4.200838 TGCGTCTTCTGTCAAATATCCA 57.799 40.909 0.00 0.00 0.00 3.41
2629 3199 7.092846 GCCCATCCCTCACTTATAATAGTATGT 60.093 40.741 0.00 0.00 0.00 2.29
2787 3357 6.034591 CCTCATTGATGCACTTCAAGAAATC 58.965 40.000 8.59 0.00 38.90 2.17
2794 3364 4.318332 TGCACTTCAAGAAATCGATGTCT 58.682 39.130 12.58 12.58 0.00 3.41
3003 3573 4.040706 ACAAATGGAGTGGCAAACATCATT 59.959 37.500 0.00 0.00 36.12 2.57
3309 3879 3.611766 ATTTCCACTAACGGTCCTGAG 57.388 47.619 0.00 0.00 0.00 3.35
3417 3987 6.529829 CCGTGTTCCAAATAATAAATGTGGTG 59.470 38.462 0.00 0.00 0.00 4.17
3458 4031 2.158740 TCGGGTTTTGGACTGTGAATGA 60.159 45.455 0.00 0.00 0.00 2.57
4041 4742 6.572519 AGCAACTCAAAAGTTTATTGCTTGA 58.427 32.000 17.15 4.94 43.28 3.02
4604 5367 5.128919 ACATTGATCTGGCTAAACATCTCC 58.871 41.667 0.00 0.00 0.00 3.71
4605 5368 3.459232 TGATCTGGCTAAACATCTCCG 57.541 47.619 0.00 0.00 0.00 4.63
4606 5369 3.031013 TGATCTGGCTAAACATCTCCGA 58.969 45.455 0.00 0.00 0.00 4.55
4607 5370 3.450817 TGATCTGGCTAAACATCTCCGAA 59.549 43.478 0.00 0.00 0.00 4.30
4608 5371 3.973206 TCTGGCTAAACATCTCCGAAA 57.027 42.857 0.00 0.00 0.00 3.46
4609 5372 3.596214 TCTGGCTAAACATCTCCGAAAC 58.404 45.455 0.00 0.00 0.00 2.78
4610 5373 3.260884 TCTGGCTAAACATCTCCGAAACT 59.739 43.478 0.00 0.00 0.00 2.66
4611 5374 4.464951 TCTGGCTAAACATCTCCGAAACTA 59.535 41.667 0.00 0.00 0.00 2.24
4612 5375 4.501071 TGGCTAAACATCTCCGAAACTAC 58.499 43.478 0.00 0.00 0.00 2.73
4613 5376 4.222145 TGGCTAAACATCTCCGAAACTACT 59.778 41.667 0.00 0.00 0.00 2.57
4614 5377 5.419788 TGGCTAAACATCTCCGAAACTACTA 59.580 40.000 0.00 0.00 0.00 1.82
4615 5378 5.747675 GGCTAAACATCTCCGAAACTACTAC 59.252 44.000 0.00 0.00 0.00 2.73
4616 5379 6.327934 GCTAAACATCTCCGAAACTACTACA 58.672 40.000 0.00 0.00 0.00 2.74
4617 5380 6.253083 GCTAAACATCTCCGAAACTACTACAC 59.747 42.308 0.00 0.00 0.00 2.90
4618 5381 5.717078 AACATCTCCGAAACTACTACACA 57.283 39.130 0.00 0.00 0.00 3.72
4619 5382 5.056894 ACATCTCCGAAACTACTACACAC 57.943 43.478 0.00 0.00 0.00 3.82
4620 5383 4.521639 ACATCTCCGAAACTACTACACACA 59.478 41.667 0.00 0.00 0.00 3.72
4621 5384 4.494350 TCTCCGAAACTACTACACACAC 57.506 45.455 0.00 0.00 0.00 3.82
4622 5385 3.058708 TCTCCGAAACTACTACACACACG 60.059 47.826 0.00 0.00 0.00 4.49
4623 5386 2.877786 TCCGAAACTACTACACACACGA 59.122 45.455 0.00 0.00 0.00 4.35
4624 5387 2.975851 CCGAAACTACTACACACACGAC 59.024 50.000 0.00 0.00 0.00 4.34
4625 5388 3.548616 CCGAAACTACTACACACACGACA 60.549 47.826 0.00 0.00 0.00 4.35
4626 5389 3.662645 CGAAACTACTACACACACGACAG 59.337 47.826 0.00 0.00 0.00 3.51
4627 5390 4.604976 GAAACTACTACACACACGACAGT 58.395 43.478 0.00 0.00 0.00 3.55
4628 5391 4.644103 AACTACTACACACACGACAGTT 57.356 40.909 0.00 0.00 0.00 3.16
4629 5392 4.644103 ACTACTACACACACGACAGTTT 57.356 40.909 0.00 0.00 0.00 2.66
4630 5393 4.604976 ACTACTACACACACGACAGTTTC 58.395 43.478 0.00 0.00 0.00 2.78
4631 5394 3.513680 ACTACACACACGACAGTTTCA 57.486 42.857 0.00 0.00 0.00 2.69
4632 5395 3.444916 ACTACACACACGACAGTTTCAG 58.555 45.455 0.00 0.00 0.00 3.02
4633 5396 2.380084 ACACACACGACAGTTTCAGT 57.620 45.000 0.00 0.00 0.00 3.41
4634 5397 1.999735 ACACACACGACAGTTTCAGTG 59.000 47.619 0.00 0.00 40.17 3.66
4635 5398 2.267426 CACACACGACAGTTTCAGTGA 58.733 47.619 6.02 0.00 37.95 3.41
4636 5399 2.670905 CACACACGACAGTTTCAGTGAA 59.329 45.455 0.08 0.08 37.95 3.18
4637 5400 2.671396 ACACACGACAGTTTCAGTGAAC 59.329 45.455 4.68 1.30 37.95 3.18
4638 5401 1.924524 ACACGACAGTTTCAGTGAACG 59.075 47.619 4.68 8.12 37.95 3.95
4639 5402 2.190161 CACGACAGTTTCAGTGAACGA 58.810 47.619 16.80 0.00 36.79 3.85
4640 5403 2.034842 CACGACAGTTTCAGTGAACGAC 60.035 50.000 16.80 9.20 36.79 4.34
4641 5404 2.190161 CGACAGTTTCAGTGAACGACA 58.810 47.619 4.68 0.00 34.74 4.35
4642 5405 2.794910 CGACAGTTTCAGTGAACGACAT 59.205 45.455 4.68 0.00 34.74 3.06
4643 5406 3.362014 CGACAGTTTCAGTGAACGACATG 60.362 47.826 4.68 5.57 34.74 3.21
4644 5407 3.792401 ACAGTTTCAGTGAACGACATGA 58.208 40.909 4.68 0.00 34.74 3.07
4645 5408 3.804325 ACAGTTTCAGTGAACGACATGAG 59.196 43.478 4.68 0.00 34.74 2.90
4646 5409 3.185188 CAGTTTCAGTGAACGACATGAGG 59.815 47.826 4.68 0.00 34.74 3.86
4647 5410 3.069586 AGTTTCAGTGAACGACATGAGGA 59.930 43.478 4.68 0.00 34.74 3.71
4648 5411 2.724977 TCAGTGAACGACATGAGGAC 57.275 50.000 0.00 0.00 0.00 3.85
4649 5412 1.068541 TCAGTGAACGACATGAGGACG 60.069 52.381 0.00 2.28 0.00 4.79
4650 5413 1.068541 CAGTGAACGACATGAGGACGA 60.069 52.381 0.00 0.00 0.00 4.20
4651 5414 1.819288 AGTGAACGACATGAGGACGAT 59.181 47.619 0.00 0.00 0.00 3.73
4652 5415 3.014623 AGTGAACGACATGAGGACGATA 58.985 45.455 0.00 0.00 0.00 2.92
4653 5416 3.065510 AGTGAACGACATGAGGACGATAG 59.934 47.826 0.00 0.00 46.19 2.08
4654 5417 2.223502 TGAACGACATGAGGACGATAGC 60.224 50.000 0.00 0.00 42.67 2.97
4655 5418 1.681538 ACGACATGAGGACGATAGCT 58.318 50.000 0.00 0.00 42.67 3.32
4656 5419 2.847441 ACGACATGAGGACGATAGCTA 58.153 47.619 0.00 0.00 42.67 3.32
4657 5420 3.211865 ACGACATGAGGACGATAGCTAA 58.788 45.455 0.00 0.00 42.67 3.09
4658 5421 3.821600 ACGACATGAGGACGATAGCTAAT 59.178 43.478 0.00 0.00 42.67 1.73
4659 5422 4.083217 ACGACATGAGGACGATAGCTAATC 60.083 45.833 0.00 0.00 42.67 1.75
4660 5423 4.673061 CGACATGAGGACGATAGCTAATCC 60.673 50.000 12.15 12.15 42.67 3.01
4661 5424 4.152647 ACATGAGGACGATAGCTAATCCA 58.847 43.478 19.05 5.20 42.67 3.41
4662 5425 4.588951 ACATGAGGACGATAGCTAATCCAA 59.411 41.667 19.05 10.52 42.67 3.53
4663 5426 4.585955 TGAGGACGATAGCTAATCCAAC 57.414 45.455 19.05 14.08 42.67 3.77
4664 5427 3.321111 TGAGGACGATAGCTAATCCAACC 59.679 47.826 19.05 9.68 42.67 3.77
4665 5428 2.296471 AGGACGATAGCTAATCCAACCG 59.704 50.000 19.05 8.45 42.67 4.44
4666 5429 2.059541 GACGATAGCTAATCCAACCGC 58.940 52.381 0.00 0.00 42.67 5.68
4667 5430 1.687123 ACGATAGCTAATCCAACCGCT 59.313 47.619 0.00 0.00 42.67 5.52
4668 5431 2.061773 CGATAGCTAATCCAACCGCTG 58.938 52.381 0.00 0.00 34.14 5.18
4669 5432 5.660710 ACGATAGCTAATCCAACCGCTGG 62.661 52.174 0.00 0.00 44.21 4.85
4679 5442 2.336554 CAACCGCTGGAGATGTTTTG 57.663 50.000 1.50 0.00 0.00 2.44
4680 5443 0.598065 AACCGCTGGAGATGTTTTGC 59.402 50.000 1.50 0.00 0.00 3.68
4681 5444 1.244019 ACCGCTGGAGATGTTTTGCC 61.244 55.000 1.50 0.00 0.00 4.52
4682 5445 0.962356 CCGCTGGAGATGTTTTGCCT 60.962 55.000 0.00 0.00 0.00 4.75
4683 5446 0.883833 CGCTGGAGATGTTTTGCCTT 59.116 50.000 0.00 0.00 0.00 4.35
4684 5447 1.401931 CGCTGGAGATGTTTTGCCTTG 60.402 52.381 0.00 0.00 0.00 3.61
4685 5448 1.067354 GCTGGAGATGTTTTGCCTTGG 60.067 52.381 0.00 0.00 0.00 3.61
4686 5449 2.517959 CTGGAGATGTTTTGCCTTGGA 58.482 47.619 0.00 0.00 0.00 3.53
4687 5450 2.229784 CTGGAGATGTTTTGCCTTGGAC 59.770 50.000 0.00 0.00 0.00 4.02
4688 5451 2.158475 TGGAGATGTTTTGCCTTGGACT 60.158 45.455 0.00 0.00 0.00 3.85
4689 5452 2.893489 GGAGATGTTTTGCCTTGGACTT 59.107 45.455 0.00 0.00 0.00 3.01
4690 5453 3.321968 GGAGATGTTTTGCCTTGGACTTT 59.678 43.478 0.00 0.00 0.00 2.66
4691 5454 4.301628 GAGATGTTTTGCCTTGGACTTTG 58.698 43.478 0.00 0.00 0.00 2.77
4692 5455 3.960102 AGATGTTTTGCCTTGGACTTTGA 59.040 39.130 0.00 0.00 0.00 2.69
4693 5456 4.590222 AGATGTTTTGCCTTGGACTTTGAT 59.410 37.500 0.00 0.00 0.00 2.57
4694 5457 4.057406 TGTTTTGCCTTGGACTTTGATG 57.943 40.909 0.00 0.00 0.00 3.07
4695 5458 3.181467 TGTTTTGCCTTGGACTTTGATGG 60.181 43.478 0.00 0.00 0.00 3.51
4696 5459 2.380064 TTGCCTTGGACTTTGATGGT 57.620 45.000 0.00 0.00 0.00 3.55
4697 5460 1.619654 TGCCTTGGACTTTGATGGTG 58.380 50.000 0.00 0.00 0.00 4.17
4698 5461 0.890683 GCCTTGGACTTTGATGGTGG 59.109 55.000 0.00 0.00 0.00 4.61
4699 5462 1.549203 CCTTGGACTTTGATGGTGGG 58.451 55.000 0.00 0.00 0.00 4.61
4700 5463 1.075374 CCTTGGACTTTGATGGTGGGA 59.925 52.381 0.00 0.00 0.00 4.37
4701 5464 2.291800 CCTTGGACTTTGATGGTGGGAT 60.292 50.000 0.00 0.00 0.00 3.85
4702 5465 3.053693 CCTTGGACTTTGATGGTGGGATA 60.054 47.826 0.00 0.00 0.00 2.59
4703 5466 4.386761 CCTTGGACTTTGATGGTGGGATAT 60.387 45.833 0.00 0.00 0.00 1.63
4704 5467 4.169059 TGGACTTTGATGGTGGGATATG 57.831 45.455 0.00 0.00 0.00 1.78
4705 5468 3.527253 TGGACTTTGATGGTGGGATATGT 59.473 43.478 0.00 0.00 0.00 2.29
4706 5469 4.017591 TGGACTTTGATGGTGGGATATGTT 60.018 41.667 0.00 0.00 0.00 2.71
4707 5470 5.192722 TGGACTTTGATGGTGGGATATGTTA 59.807 40.000 0.00 0.00 0.00 2.41
4708 5471 6.126215 TGGACTTTGATGGTGGGATATGTTAT 60.126 38.462 0.00 0.00 0.00 1.89
4709 5472 7.073088 TGGACTTTGATGGTGGGATATGTTATA 59.927 37.037 0.00 0.00 0.00 0.98
4710 5473 8.109634 GGACTTTGATGGTGGGATATGTTATAT 58.890 37.037 0.00 0.00 0.00 0.86
4711 5474 9.167311 GACTTTGATGGTGGGATATGTTATATC 57.833 37.037 0.00 0.00 0.00 1.63
4712 5475 7.824289 ACTTTGATGGTGGGATATGTTATATCG 59.176 37.037 0.00 0.00 0.00 2.92
4713 5476 6.867519 TGATGGTGGGATATGTTATATCGT 57.132 37.500 0.00 0.00 0.00 3.73
4714 5477 6.873997 TGATGGTGGGATATGTTATATCGTC 58.126 40.000 0.00 0.00 0.00 4.20
4715 5478 6.667848 TGATGGTGGGATATGTTATATCGTCT 59.332 38.462 0.00 0.00 0.00 4.18
4716 5479 6.280855 TGGTGGGATATGTTATATCGTCTG 57.719 41.667 0.00 0.00 0.00 3.51
4717 5480 5.109903 GGTGGGATATGTTATATCGTCTGC 58.890 45.833 0.00 0.00 0.00 4.26
4718 5481 5.337250 GGTGGGATATGTTATATCGTCTGCA 60.337 44.000 0.00 0.00 0.00 4.41
4719 5482 6.341316 GTGGGATATGTTATATCGTCTGCAT 58.659 40.000 0.00 0.00 0.00 3.96
4720 5483 6.256539 GTGGGATATGTTATATCGTCTGCATG 59.743 42.308 0.00 0.00 0.00 4.06
4721 5484 6.070824 TGGGATATGTTATATCGTCTGCATGT 60.071 38.462 0.00 0.00 0.00 3.21
4722 5485 6.477033 GGGATATGTTATATCGTCTGCATGTC 59.523 42.308 0.00 0.00 0.00 3.06
4723 5486 6.197282 GGATATGTTATATCGTCTGCATGTCG 59.803 42.308 0.00 0.00 0.00 4.35
4724 5487 4.301637 TGTTATATCGTCTGCATGTCGT 57.698 40.909 0.00 0.00 0.00 4.34
4725 5488 4.287720 TGTTATATCGTCTGCATGTCGTC 58.712 43.478 0.00 0.00 0.00 4.20
4726 5489 2.423926 ATATCGTCTGCATGTCGTCC 57.576 50.000 0.00 0.00 0.00 4.79
4727 5490 1.099689 TATCGTCTGCATGTCGTCCA 58.900 50.000 0.00 0.00 0.00 4.02
4728 5491 0.179127 ATCGTCTGCATGTCGTCCAG 60.179 55.000 0.00 0.00 0.00 3.86
4729 5492 2.447887 CGTCTGCATGTCGTCCAGC 61.448 63.158 0.00 0.00 0.00 4.85
4730 5493 2.103042 GTCTGCATGTCGTCCAGCC 61.103 63.158 0.00 0.00 0.00 4.85
4731 5494 2.046988 CTGCATGTCGTCCAGCCA 60.047 61.111 0.00 0.00 0.00 4.75
4732 5495 2.046988 TGCATGTCGTCCAGCCAG 60.047 61.111 0.00 0.00 0.00 4.85
4733 5496 3.503363 GCATGTCGTCCAGCCAGC 61.503 66.667 0.00 0.00 0.00 4.85
4734 5497 3.190849 CATGTCGTCCAGCCAGCG 61.191 66.667 0.00 0.00 0.00 5.18
4735 5498 3.695606 ATGTCGTCCAGCCAGCGT 61.696 61.111 0.00 0.00 0.00 5.07
4736 5499 3.649277 ATGTCGTCCAGCCAGCGTC 62.649 63.158 0.00 0.00 0.00 5.19
4758 5521 2.253392 GCATGTAGCACTGCTCAAAC 57.747 50.000 6.86 0.83 44.79 2.93
4759 5522 1.536766 GCATGTAGCACTGCTCAAACA 59.463 47.619 6.86 7.20 44.79 2.83
4760 5523 2.163010 GCATGTAGCACTGCTCAAACAT 59.837 45.455 6.86 9.32 44.79 2.71
4761 5524 3.730061 GCATGTAGCACTGCTCAAACATC 60.730 47.826 6.86 3.63 44.79 3.06
4762 5525 3.407424 TGTAGCACTGCTCAAACATCT 57.593 42.857 6.86 0.00 40.44 2.90
4763 5526 3.329386 TGTAGCACTGCTCAAACATCTC 58.671 45.455 6.86 0.00 40.44 2.75
4772 5541 5.016051 TGCTCAAACATCTCTATGAGACC 57.984 43.478 5.85 0.00 41.76 3.85
4953 5731 2.905415 TTTGAGGGAGCATTCATGGT 57.095 45.000 0.00 0.00 41.89 3.55
5153 5931 5.324697 GTGCACCTTTTCTTCTTAATAGCG 58.675 41.667 5.22 0.00 0.00 4.26
5187 5993 7.069331 AGAGAGAAAACCTATCTCGTCATTCAT 59.931 37.037 0.00 0.00 46.31 2.57
5188 5994 7.206687 AGAGAAAACCTATCTCGTCATTCATC 58.793 38.462 0.00 0.00 46.31 2.92
5189 5995 6.878317 AGAAAACCTATCTCGTCATTCATCA 58.122 36.000 0.00 0.00 0.00 3.07
5190 5996 7.504403 AGAAAACCTATCTCGTCATTCATCAT 58.496 34.615 0.00 0.00 0.00 2.45
5191 5997 7.989741 AGAAAACCTATCTCGTCATTCATCATT 59.010 33.333 0.00 0.00 0.00 2.57
5192 5998 7.721286 AAACCTATCTCGTCATTCATCATTC 57.279 36.000 0.00 0.00 0.00 2.67
5193 5999 6.410942 ACCTATCTCGTCATTCATCATTCA 57.589 37.500 0.00 0.00 0.00 2.57
5306 6913 2.824936 CCTGGAATGGTGTGCATTACAA 59.175 45.455 0.00 0.00 41.89 2.41
5607 7220 6.855763 TTTCATACATCAAAAATCAGGCCT 57.144 33.333 0.00 0.00 0.00 5.19
6083 7887 5.088739 GCTTGAAGAAACCATCACATAACG 58.911 41.667 0.00 0.00 0.00 3.18
6172 8143 5.526506 AGGCTCTATTTGGAATTGCATTC 57.473 39.130 0.00 0.00 38.55 2.67
6310 8288 1.002069 ATTTGGGAGGTCAGCCATCA 58.998 50.000 0.00 0.00 37.19 3.07
6883 9005 3.076621 TGGTGATGAGCTGCTACAAAAG 58.923 45.455 0.15 0.00 0.00 2.27
6904 9026 5.741388 AGATATCGACAAAATGCAAGGAC 57.259 39.130 0.00 0.00 0.00 3.85
6923 9045 0.471617 CCATAGGAGAGGTGGCCAAG 59.528 60.000 7.24 0.00 0.00 3.61
7036 9158 5.163673 GGAAATGGAAGAGCAAAGAGATCAC 60.164 44.000 0.00 0.00 34.30 3.06
7047 9169 4.155462 GCAAAGAGATCACAAGAGCAATGA 59.845 41.667 0.00 0.00 30.99 2.57
7055 9177 3.250762 TCACAAGAGCAATGAAAACGGAG 59.749 43.478 0.00 0.00 0.00 4.63
7199 9388 6.692249 GGAGTCGTTATTAGCTCAAGTTAGTC 59.308 42.308 0.00 0.00 0.00 2.59
7243 9432 5.047519 CCTTTCAGGCTCAAAGATGAACAAT 60.048 40.000 12.84 0.00 34.49 2.71
7244 9433 5.633830 TTCAGGCTCAAAGATGAACAATC 57.366 39.130 0.00 0.00 34.49 2.67
7256 9445 6.194796 AGATGAACAATCAATTAACCGTGG 57.805 37.500 0.00 0.00 39.49 4.94
7483 9683 9.862149 TTCCTCTTAAGTAAGAACATTTCCTTT 57.138 29.630 1.63 0.00 41.37 3.11
7542 9742 8.441312 TTTTGTAACGATCTAGAAAAGGTTGT 57.559 30.769 0.00 0.00 34.04 3.32
7547 9747 4.213482 ACGATCTAGAAAAGGTTGTGTTGC 59.787 41.667 0.00 0.00 31.13 4.17
7597 9797 2.746904 CAGTAACCCGACATTTGCATGA 59.253 45.455 0.00 0.00 34.11 3.07
7614 9814 5.283294 TGCATGAAATTCACAAACTGTCTG 58.717 37.500 0.00 0.00 0.00 3.51
7633 9833 1.259840 GGCCCTGCACCAACATTCAT 61.260 55.000 0.00 0.00 0.00 2.57
7813 10112 3.440173 ACATTGCAATCGAGTAACCTTGG 59.560 43.478 9.53 0.00 0.00 3.61
7878 10256 1.073444 AGTAGCATGGCATGGATCAGG 59.927 52.381 27.48 1.89 0.00 3.86
8209 10615 2.435938 GCCTTCCATCGGTTCGCA 60.436 61.111 0.00 0.00 0.00 5.10
8333 10768 8.400947 TGTCATTGTGAAGAAAGAAAGAAAGAG 58.599 33.333 0.00 0.00 0.00 2.85
8334 10769 7.859875 GTCATTGTGAAGAAAGAAAGAAAGAGG 59.140 37.037 0.00 0.00 0.00 3.69
8337 10772 6.058183 TGTGAAGAAAGAAAGAAAGAGGGAG 58.942 40.000 0.00 0.00 0.00 4.30
8339 10774 6.768381 GTGAAGAAAGAAAGAAAGAGGGAGAA 59.232 38.462 0.00 0.00 0.00 2.87
8342 10777 7.815840 AGAAAGAAAGAAAGAGGGAGAAAAG 57.184 36.000 0.00 0.00 0.00 2.27
8343 10778 6.264292 AGAAAGAAAGAAAGAGGGAGAAAAGC 59.736 38.462 0.00 0.00 0.00 3.51
8348 10799 1.884235 AAGAGGGAGAAAAGCACACG 58.116 50.000 0.00 0.00 0.00 4.49
8468 10941 7.395190 TGTTATGAATCAAATCAAGACCCAG 57.605 36.000 0.00 0.00 32.06 4.45
8472 10990 4.219070 TGAATCAAATCAAGACCCAGCAAG 59.781 41.667 0.00 0.00 0.00 4.01
8513 11031 4.751767 TCTCTGGCCACAACAAAATTTT 57.248 36.364 0.00 0.00 0.00 1.82
8622 11142 1.209019 AGTGCCAGCTTCCTGTATGAG 59.791 52.381 0.00 0.00 37.38 2.90
8636 11156 6.950842 TCCTGTATGAGAAAGATCACAACAT 58.049 36.000 0.00 0.00 29.78 2.71
8666 11187 8.703743 TGGAAAGGCAATGCATATAGTATTTTT 58.296 29.630 7.79 0.00 29.42 1.94
8709 11230 7.506328 ACTCAAAAGTACCAACCTTCAATAC 57.494 36.000 0.00 0.00 32.59 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 183 3.708451 TCCATAGCAGTGAAGTACTCCA 58.292 45.455 0.00 0.00 37.60 3.86
200 203 6.592607 ACTTGATGAATTTGTTCCATGCATTC 59.407 34.615 0.00 0.00 0.00 2.67
210 213 7.729116 ACCAAAGATGACTTGATGAATTTGTT 58.271 30.769 0.00 0.00 36.39 2.83
306 310 3.942115 GGGGATTTGTGAAGCTAACTCTC 59.058 47.826 0.00 0.00 0.00 3.20
311 315 3.075283 TCCAAGGGGATTTGTGAAGCTAA 59.925 43.478 0.00 0.00 38.64 3.09
355 369 1.807814 ATCCCTTAGCTTCCCACGAT 58.192 50.000 0.00 0.00 0.00 3.73
467 503 2.227388 GGAAAGAGCACATCACCAACTG 59.773 50.000 0.00 0.00 0.00 3.16
539 575 2.104111 TGGTGGGCTAAGAATATCACCG 59.896 50.000 0.00 0.00 45.32 4.94
595 704 7.547227 ACTTAAAACAGGGCAACATATTGATC 58.453 34.615 0.00 0.00 38.15 2.92
698 834 9.927668 ACAAATATCATGGGTTTTCTACAAAAG 57.072 29.630 0.00 0.00 31.92 2.27
724 860 8.744568 TGATATGTGTTGCAGGTTGATTAATA 57.255 30.769 0.00 0.00 0.00 0.98
916 1070 5.915196 GCACTGGTATGAAAGAAAGACAAAC 59.085 40.000 0.00 0.00 0.00 2.93
960 1114 5.849510 ACAACCTTGGTTTTTATTAGGTGC 58.150 37.500 1.76 0.00 39.11 5.01
1100 1297 6.696583 TCACACAATCACAACACATTTGAATC 59.303 34.615 0.00 0.00 0.00 2.52
1269 1476 1.226945 GCCCGTGCATTGTAATGGC 60.227 57.895 6.72 1.08 36.90 4.40
1275 1482 0.314935 CAAAAGAGCCCGTGCATTGT 59.685 50.000 0.00 0.00 41.13 2.71
1315 1522 7.880160 TGGGATCATAGAAAACAACCTATTG 57.120 36.000 0.00 0.00 41.98 1.90
1347 1555 2.501723 TCTAAGGTCACTGAGGCATTCC 59.498 50.000 0.00 0.00 0.00 3.01
1389 1597 6.937436 AAACCTTCTTCTTCGTTATTGTGT 57.063 33.333 0.00 0.00 0.00 3.72
1485 1699 5.068460 ACTTGTGAATGGATTTTTCAACCGA 59.932 36.000 0.00 0.00 35.03 4.69
1487 1701 6.200854 GTCACTTGTGAATGGATTTTTCAACC 59.799 38.462 4.93 0.00 35.03 3.77
1528 1742 1.069668 GATTGCTTGATTGGGCCCATC 59.930 52.381 29.23 24.06 0.00 3.51
1530 1744 0.977108 GGATTGCTTGATTGGGCCCA 60.977 55.000 24.45 24.45 0.00 5.36
1566 1780 8.185505 TGAAAGCACGTTAGAATTACAAGTTTT 58.814 29.630 0.00 0.00 0.00 2.43
1701 1915 7.201794 GCTTGGTTATGGAGGTAGTATTTTTCC 60.202 40.741 0.00 0.00 0.00 3.13
1731 1945 2.228545 TGGACAAGCCAAATATGCCA 57.771 45.000 0.00 0.00 45.87 4.92
2141 2639 4.021981 TCATGATACGAGATACAAGGCCAG 60.022 45.833 5.01 0.00 0.00 4.85
2629 3199 5.390040 CCAATGTTGCTCGTACAAAATACGA 60.390 40.000 8.70 8.70 46.10 3.43
2787 3357 2.109463 CGATACGGAACACAGACATCG 58.891 52.381 0.00 0.00 0.00 3.84
2794 3364 1.803922 CGCTGCGATACGGAACACA 60.804 57.895 18.66 0.00 0.00 3.72
3003 3573 3.387699 TGACACTTGGATTGAGTGAGTCA 59.612 43.478 10.87 3.02 45.72 3.41
3210 3780 4.599041 CACTGGATATCCCAACCTTTTCA 58.401 43.478 19.34 0.00 46.07 2.69
3309 3879 3.269486 TGTACGATCGCTGATAAGAGC 57.731 47.619 16.60 0.00 35.46 4.09
3417 3987 3.181480 CGATTTCTCTCCAACCTCTCTCC 60.181 52.174 0.00 0.00 0.00 3.71
3525 4100 1.284785 TCTCCAGGCCAAATTACAGGG 59.715 52.381 5.01 0.00 0.00 4.45
4604 5367 3.620761 TGTCGTGTGTGTAGTAGTTTCG 58.379 45.455 0.00 0.00 0.00 3.46
4605 5368 4.604976 ACTGTCGTGTGTGTAGTAGTTTC 58.395 43.478 0.00 0.00 0.00 2.78
4606 5369 4.644103 ACTGTCGTGTGTGTAGTAGTTT 57.356 40.909 0.00 0.00 0.00 2.66
4607 5370 4.644103 AACTGTCGTGTGTGTAGTAGTT 57.356 40.909 0.00 0.00 0.00 2.24
4608 5371 4.096833 TGAAACTGTCGTGTGTGTAGTAGT 59.903 41.667 0.00 0.00 0.00 2.73
4609 5372 4.603985 TGAAACTGTCGTGTGTGTAGTAG 58.396 43.478 0.00 0.00 0.00 2.57
4610 5373 4.096833 ACTGAAACTGTCGTGTGTGTAGTA 59.903 41.667 0.00 0.00 0.00 1.82
4611 5374 3.119245 ACTGAAACTGTCGTGTGTGTAGT 60.119 43.478 0.00 0.00 0.00 2.73
4612 5375 3.242944 CACTGAAACTGTCGTGTGTGTAG 59.757 47.826 0.00 0.00 32.14 2.74
4613 5376 3.119424 TCACTGAAACTGTCGTGTGTGTA 60.119 43.478 0.00 0.00 35.82 2.90
4614 5377 1.999735 CACTGAAACTGTCGTGTGTGT 59.000 47.619 0.00 0.00 32.14 3.72
4615 5378 2.267426 TCACTGAAACTGTCGTGTGTG 58.733 47.619 0.00 0.00 35.82 3.82
4616 5379 2.665649 TCACTGAAACTGTCGTGTGT 57.334 45.000 0.00 0.00 35.82 3.72
4617 5380 2.285026 CGTTCACTGAAACTGTCGTGTG 60.285 50.000 0.00 0.00 35.73 3.82
4618 5381 1.924524 CGTTCACTGAAACTGTCGTGT 59.075 47.619 0.00 0.00 34.45 4.49
4619 5382 2.034842 GTCGTTCACTGAAACTGTCGTG 60.035 50.000 0.00 0.00 34.25 4.35
4620 5383 2.190981 GTCGTTCACTGAAACTGTCGT 58.809 47.619 0.00 0.00 0.00 4.34
4621 5384 2.190161 TGTCGTTCACTGAAACTGTCG 58.810 47.619 0.00 0.00 0.00 4.35
4622 5385 3.802139 TCATGTCGTTCACTGAAACTGTC 59.198 43.478 0.00 0.00 0.00 3.51
4623 5386 3.792401 TCATGTCGTTCACTGAAACTGT 58.208 40.909 0.00 0.00 0.00 3.55
4624 5387 3.185188 CCTCATGTCGTTCACTGAAACTG 59.815 47.826 0.00 0.00 0.00 3.16
4625 5388 3.069586 TCCTCATGTCGTTCACTGAAACT 59.930 43.478 0.00 0.00 0.00 2.66
4626 5389 3.184581 GTCCTCATGTCGTTCACTGAAAC 59.815 47.826 0.00 0.00 0.00 2.78
4627 5390 3.390135 GTCCTCATGTCGTTCACTGAAA 58.610 45.455 0.00 0.00 0.00 2.69
4628 5391 2.607038 CGTCCTCATGTCGTTCACTGAA 60.607 50.000 0.00 0.00 0.00 3.02
4629 5392 1.068541 CGTCCTCATGTCGTTCACTGA 60.069 52.381 0.00 0.00 0.00 3.41
4630 5393 1.068541 TCGTCCTCATGTCGTTCACTG 60.069 52.381 0.00 0.00 0.00 3.66
4631 5394 1.244816 TCGTCCTCATGTCGTTCACT 58.755 50.000 0.00 0.00 0.00 3.41
4632 5395 2.279582 ATCGTCCTCATGTCGTTCAC 57.720 50.000 0.00 0.00 0.00 3.18
4633 5396 2.223502 GCTATCGTCCTCATGTCGTTCA 60.224 50.000 0.00 0.00 0.00 3.18
4634 5397 2.033550 AGCTATCGTCCTCATGTCGTTC 59.966 50.000 0.00 0.00 0.00 3.95
4635 5398 2.025155 AGCTATCGTCCTCATGTCGTT 58.975 47.619 0.00 0.00 0.00 3.85
4636 5399 1.681538 AGCTATCGTCCTCATGTCGT 58.318 50.000 0.00 0.00 0.00 4.34
4637 5400 3.898517 TTAGCTATCGTCCTCATGTCG 57.101 47.619 0.00 0.00 0.00 4.35
4638 5401 4.218635 TGGATTAGCTATCGTCCTCATGTC 59.781 45.833 16.66 0.00 33.82 3.06
4639 5402 4.152647 TGGATTAGCTATCGTCCTCATGT 58.847 43.478 16.66 0.00 33.82 3.21
4640 5403 4.790765 TGGATTAGCTATCGTCCTCATG 57.209 45.455 16.66 0.00 33.82 3.07
4641 5404 4.021016 GGTTGGATTAGCTATCGTCCTCAT 60.021 45.833 16.66 0.00 33.82 2.90
4642 5405 3.321111 GGTTGGATTAGCTATCGTCCTCA 59.679 47.826 16.66 5.73 33.82 3.86
4643 5406 3.612004 CGGTTGGATTAGCTATCGTCCTC 60.612 52.174 16.66 11.51 33.82 3.71
4644 5407 2.296471 CGGTTGGATTAGCTATCGTCCT 59.704 50.000 16.66 0.00 33.82 3.85
4645 5408 2.673833 CGGTTGGATTAGCTATCGTCC 58.326 52.381 11.48 11.48 33.82 4.79
4646 5409 2.059541 GCGGTTGGATTAGCTATCGTC 58.940 52.381 0.00 0.00 33.82 4.20
4647 5410 1.687123 AGCGGTTGGATTAGCTATCGT 59.313 47.619 0.00 0.00 38.29 3.73
4648 5411 2.061773 CAGCGGTTGGATTAGCTATCG 58.938 52.381 0.00 0.00 37.94 2.92
4660 5423 1.666888 GCAAAACATCTCCAGCGGTTG 60.667 52.381 0.00 0.00 0.00 3.77
4661 5424 0.598065 GCAAAACATCTCCAGCGGTT 59.402 50.000 0.00 0.00 0.00 4.44
4662 5425 1.244019 GGCAAAACATCTCCAGCGGT 61.244 55.000 0.00 0.00 0.00 5.68
4663 5426 0.962356 AGGCAAAACATCTCCAGCGG 60.962 55.000 0.00 0.00 0.00 5.52
4664 5427 0.883833 AAGGCAAAACATCTCCAGCG 59.116 50.000 0.00 0.00 0.00 5.18
4665 5428 1.067354 CCAAGGCAAAACATCTCCAGC 60.067 52.381 0.00 0.00 0.00 4.85
4666 5429 2.229784 GTCCAAGGCAAAACATCTCCAG 59.770 50.000 0.00 0.00 0.00 3.86
4667 5430 2.158475 AGTCCAAGGCAAAACATCTCCA 60.158 45.455 0.00 0.00 0.00 3.86
4668 5431 2.519013 AGTCCAAGGCAAAACATCTCC 58.481 47.619 0.00 0.00 0.00 3.71
4669 5432 4.037923 TCAAAGTCCAAGGCAAAACATCTC 59.962 41.667 0.00 0.00 0.00 2.75
4670 5433 3.960102 TCAAAGTCCAAGGCAAAACATCT 59.040 39.130 0.00 0.00 0.00 2.90
4671 5434 4.320608 TCAAAGTCCAAGGCAAAACATC 57.679 40.909 0.00 0.00 0.00 3.06
4672 5435 4.503643 CCATCAAAGTCCAAGGCAAAACAT 60.504 41.667 0.00 0.00 0.00 2.71
4673 5436 3.181467 CCATCAAAGTCCAAGGCAAAACA 60.181 43.478 0.00 0.00 0.00 2.83
4674 5437 3.181466 ACCATCAAAGTCCAAGGCAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
4675 5438 3.037549 ACCATCAAAGTCCAAGGCAAAA 58.962 40.909 0.00 0.00 0.00 2.44
4676 5439 2.364970 CACCATCAAAGTCCAAGGCAAA 59.635 45.455 0.00 0.00 0.00 3.68
4677 5440 1.962807 CACCATCAAAGTCCAAGGCAA 59.037 47.619 0.00 0.00 0.00 4.52
4678 5441 1.619654 CACCATCAAAGTCCAAGGCA 58.380 50.000 0.00 0.00 0.00 4.75
4679 5442 0.890683 CCACCATCAAAGTCCAAGGC 59.109 55.000 0.00 0.00 0.00 4.35
4680 5443 1.075374 TCCCACCATCAAAGTCCAAGG 59.925 52.381 0.00 0.00 0.00 3.61
4681 5444 2.584835 TCCCACCATCAAAGTCCAAG 57.415 50.000 0.00 0.00 0.00 3.61
4682 5445 4.017591 ACATATCCCACCATCAAAGTCCAA 60.018 41.667 0.00 0.00 0.00 3.53
4683 5446 3.527253 ACATATCCCACCATCAAAGTCCA 59.473 43.478 0.00 0.00 0.00 4.02
4684 5447 4.170468 ACATATCCCACCATCAAAGTCC 57.830 45.455 0.00 0.00 0.00 3.85
4685 5448 9.167311 GATATAACATATCCCACCATCAAAGTC 57.833 37.037 0.00 0.00 0.00 3.01
4686 5449 7.824289 CGATATAACATATCCCACCATCAAAGT 59.176 37.037 1.55 0.00 0.00 2.66
4687 5450 7.824289 ACGATATAACATATCCCACCATCAAAG 59.176 37.037 0.00 0.00 0.00 2.77
4688 5451 7.685481 ACGATATAACATATCCCACCATCAAA 58.315 34.615 0.00 0.00 0.00 2.69
4689 5452 7.180229 AGACGATATAACATATCCCACCATCAA 59.820 37.037 0.00 0.00 0.00 2.57
4690 5453 6.667848 AGACGATATAACATATCCCACCATCA 59.332 38.462 0.00 0.00 0.00 3.07
4691 5454 6.980978 CAGACGATATAACATATCCCACCATC 59.019 42.308 0.00 0.00 0.00 3.51
4692 5455 6.630413 GCAGACGATATAACATATCCCACCAT 60.630 42.308 0.00 0.00 0.00 3.55
4693 5456 5.337250 GCAGACGATATAACATATCCCACCA 60.337 44.000 0.00 0.00 0.00 4.17
4694 5457 5.109903 GCAGACGATATAACATATCCCACC 58.890 45.833 0.00 0.00 0.00 4.61
4695 5458 5.720202 TGCAGACGATATAACATATCCCAC 58.280 41.667 0.00 0.00 0.00 4.61
4696 5459 5.993748 TGCAGACGATATAACATATCCCA 57.006 39.130 0.00 0.00 0.00 4.37
4697 5460 6.341316 ACATGCAGACGATATAACATATCCC 58.659 40.000 0.00 0.00 0.00 3.85
4698 5461 6.197282 CGACATGCAGACGATATAACATATCC 59.803 42.308 0.00 0.00 37.60 2.59
4699 5462 6.747739 ACGACATGCAGACGATATAACATATC 59.252 38.462 14.84 0.00 38.73 1.63
4700 5463 6.621613 ACGACATGCAGACGATATAACATAT 58.378 36.000 14.84 0.00 38.73 1.78
4701 5464 6.009115 ACGACATGCAGACGATATAACATA 57.991 37.500 14.84 0.00 38.73 2.29
4702 5465 4.871513 ACGACATGCAGACGATATAACAT 58.128 39.130 14.84 0.00 38.73 2.71
4703 5466 4.287720 GACGACATGCAGACGATATAACA 58.712 43.478 14.84 0.00 38.73 2.41
4704 5467 3.669122 GGACGACATGCAGACGATATAAC 59.331 47.826 14.84 2.34 38.73 1.89
4705 5468 3.316868 TGGACGACATGCAGACGATATAA 59.683 43.478 14.84 0.00 38.73 0.98
4706 5469 2.882137 TGGACGACATGCAGACGATATA 59.118 45.455 14.84 0.00 38.73 0.86
4707 5470 1.681264 TGGACGACATGCAGACGATAT 59.319 47.619 14.84 0.00 38.73 1.63
4708 5471 1.099689 TGGACGACATGCAGACGATA 58.900 50.000 14.84 1.10 38.73 2.92
4709 5472 1.890174 TGGACGACATGCAGACGAT 59.110 52.632 14.84 2.19 38.73 3.73
4710 5473 3.361174 TGGACGACATGCAGACGA 58.639 55.556 14.84 0.00 38.73 4.20
4715 5478 2.046988 CTGGCTGGACGACATGCA 60.047 61.111 0.00 0.00 0.00 3.96
4716 5479 3.503363 GCTGGCTGGACGACATGC 61.503 66.667 0.00 0.00 0.00 4.06
4717 5480 3.190849 CGCTGGCTGGACGACATG 61.191 66.667 0.00 0.00 0.00 3.21
4718 5481 3.649277 GACGCTGGCTGGACGACAT 62.649 63.158 0.00 0.00 0.00 3.06
4719 5482 4.357947 GACGCTGGCTGGACGACA 62.358 66.667 0.00 0.00 0.00 4.35
4726 5489 4.156622 CATGCACGACGCTGGCTG 62.157 66.667 0.00 0.00 43.06 4.85
4727 5490 3.295304 TACATGCACGACGCTGGCT 62.295 57.895 0.00 0.00 43.06 4.75
4728 5491 2.802667 CTACATGCACGACGCTGGC 61.803 63.158 0.00 0.00 43.06 4.85
4729 5492 2.802667 GCTACATGCACGACGCTGG 61.803 63.158 0.00 0.00 43.06 4.85
4730 5493 2.697425 GCTACATGCACGACGCTG 59.303 61.111 0.00 0.00 43.06 5.18
4739 5502 1.536766 TGTTTGAGCAGTGCTACATGC 59.463 47.619 19.77 5.64 39.88 4.06
4740 5503 3.688185 AGATGTTTGAGCAGTGCTACATG 59.312 43.478 28.35 0.00 39.88 3.21
4741 5504 3.937706 GAGATGTTTGAGCAGTGCTACAT 59.062 43.478 25.14 25.14 39.88 2.29
4742 5505 3.007290 AGAGATGTTTGAGCAGTGCTACA 59.993 43.478 19.77 19.24 39.88 2.74
4743 5506 3.594134 AGAGATGTTTGAGCAGTGCTAC 58.406 45.455 19.77 13.68 39.88 3.58
4744 5507 3.969287 AGAGATGTTTGAGCAGTGCTA 57.031 42.857 19.77 1.47 39.88 3.49
4745 5508 2.855209 AGAGATGTTTGAGCAGTGCT 57.145 45.000 19.86 19.86 43.88 4.40
4746 5509 4.186926 TCATAGAGATGTTTGAGCAGTGC 58.813 43.478 7.13 7.13 34.41 4.40
4747 5510 5.519566 GTCTCATAGAGATGTTTGAGCAGTG 59.480 44.000 0.00 0.00 40.98 3.66
4748 5511 5.395103 GGTCTCATAGAGATGTTTGAGCAGT 60.395 44.000 0.00 0.00 40.98 4.40
4749 5512 5.049167 GGTCTCATAGAGATGTTTGAGCAG 58.951 45.833 0.00 0.00 40.98 4.24
4750 5513 4.467438 TGGTCTCATAGAGATGTTTGAGCA 59.533 41.667 0.00 0.00 40.98 4.26
4751 5514 4.808364 GTGGTCTCATAGAGATGTTTGAGC 59.192 45.833 0.00 0.00 40.98 4.26
4752 5515 6.041511 CAGTGGTCTCATAGAGATGTTTGAG 58.958 44.000 0.00 0.00 40.98 3.02
4753 5516 5.481824 ACAGTGGTCTCATAGAGATGTTTGA 59.518 40.000 0.00 0.00 40.98 2.69
4754 5517 5.728471 ACAGTGGTCTCATAGAGATGTTTG 58.272 41.667 0.00 1.24 40.98 2.93
4755 5518 6.406400 GCTACAGTGGTCTCATAGAGATGTTT 60.406 42.308 6.38 0.00 40.98 2.83
4756 5519 5.068460 GCTACAGTGGTCTCATAGAGATGTT 59.932 44.000 6.38 0.00 40.98 2.71
4757 5520 4.582656 GCTACAGTGGTCTCATAGAGATGT 59.417 45.833 0.00 3.58 40.98 3.06
4758 5521 4.826733 AGCTACAGTGGTCTCATAGAGATG 59.173 45.833 0.00 0.00 40.98 2.90
4759 5522 5.060427 AGCTACAGTGGTCTCATAGAGAT 57.940 43.478 0.00 0.00 40.98 2.75
4760 5523 4.511786 AGCTACAGTGGTCTCATAGAGA 57.488 45.455 0.00 0.00 36.22 3.10
4761 5524 6.701145 TTTAGCTACAGTGGTCTCATAGAG 57.299 41.667 0.00 0.00 0.00 2.43
4762 5525 7.661536 AATTTAGCTACAGTGGTCTCATAGA 57.338 36.000 0.00 0.00 0.00 1.98
4763 5526 9.988815 ATAAATTTAGCTACAGTGGTCTCATAG 57.011 33.333 3.94 0.00 0.00 2.23
4907 5684 9.836864 AAAGAAGAAGAAAAGGCACATTTTTAT 57.163 25.926 0.00 0.00 32.62 1.40
4908 5685 9.665719 AAAAGAAGAAGAAAAGGCACATTTTTA 57.334 25.926 0.00 0.00 32.62 1.52
5000 5778 2.504585 GGACCCTCCTAATTTCCTTCGT 59.495 50.000 0.00 0.00 32.53 3.85
5153 5931 7.107639 AGATAGGTTTTCTCTCTAGTGAAGC 57.892 40.000 0.00 0.00 28.57 3.86
5187 5993 7.815840 TTCAAATAAGGACACTGTTGAATGA 57.184 32.000 0.00 0.00 32.42 2.57
5190 5996 9.349713 ACTAATTCAAATAAGGACACTGTTGAA 57.650 29.630 0.00 0.00 37.28 2.69
5191 5997 8.918202 ACTAATTCAAATAAGGACACTGTTGA 57.082 30.769 0.00 0.00 0.00 3.18
5360 6970 0.322975 TTTCAGCTCCTCCTCTGCAC 59.677 55.000 0.00 0.00 0.00 4.57
5607 7220 5.339008 AGAAATCGTCAGGTGTAGCATAA 57.661 39.130 0.00 0.00 0.00 1.90
5911 7531 8.814038 AGCCCTAATATCCATTTATGATTGAC 57.186 34.615 0.00 0.00 0.00 3.18
6047 7847 6.458888 GGTTTCTTCAAGCCTCTTGCATATAC 60.459 42.308 1.90 0.00 44.83 1.47
6083 7887 7.971168 CCGAGAGTAAATGTATGGATCTATGTC 59.029 40.741 1.10 0.00 0.00 3.06
6883 9005 4.335315 TGGTCCTTGCATTTTGTCGATATC 59.665 41.667 0.00 0.00 0.00 1.63
6904 9026 0.471617 CTTGGCCACCTCTCCTATGG 59.528 60.000 3.88 0.00 36.51 2.74
6923 9045 1.044231 TGCCCATGCCCACATTCATC 61.044 55.000 0.00 0.00 32.87 2.92
7036 9158 3.499918 AGTCTCCGTTTTCATTGCTCTTG 59.500 43.478 0.00 0.00 0.00 3.02
7047 9169 5.045869 TCCCTATCAATTCAGTCTCCGTTTT 60.046 40.000 0.00 0.00 0.00 2.43
7055 9177 3.845781 TGGCTCCCTATCAATTCAGTC 57.154 47.619 0.00 0.00 0.00 3.51
7149 9325 5.445939 CCGTGACTAATTTGTGCACTGATAC 60.446 44.000 19.41 5.76 0.00 2.24
7199 9388 2.223805 GGTGAACTTTGCTCAGTTTGGG 60.224 50.000 3.04 0.00 37.11 4.12
7268 9457 1.705186 ACATACCCAAGTTCAGCCTGT 59.295 47.619 0.00 0.00 0.00 4.00
7269 9458 2.086869 CACATACCCAAGTTCAGCCTG 58.913 52.381 0.00 0.00 0.00 4.85
7547 9747 3.305110 GGTGTTTGTTAGAATGCCAACG 58.695 45.455 0.00 0.00 0.00 4.10
7597 9797 2.365293 GGGCCAGACAGTTTGTGAATTT 59.635 45.455 4.39 0.00 0.00 1.82
7614 9814 1.259840 ATGAATGTTGGTGCAGGGCC 61.260 55.000 0.00 0.00 0.00 5.80
7633 9833 1.929806 CTACTGTCTGTACGCGCCCA 61.930 60.000 5.73 1.16 0.00 5.36
7732 9968 5.233988 CGACTTCTCTTCTTCCAAGTTGAT 58.766 41.667 3.87 0.00 33.61 2.57
7736 9972 2.300437 CCCGACTTCTCTTCTTCCAAGT 59.700 50.000 0.00 0.00 0.00 3.16
7839 10139 2.965831 ACTGGAAAAAGAAGGGCTTTCC 59.034 45.455 5.65 6.26 45.85 3.13
7878 10256 6.715347 ATCCTTATGCTGTTAATGGAAACC 57.285 37.500 0.00 0.00 0.00 3.27
7931 10309 1.777272 CTAAAATGAGGGGAGGGGAGG 59.223 57.143 0.00 0.00 0.00 4.30
7932 10310 2.173569 CACTAAAATGAGGGGAGGGGAG 59.826 54.545 0.00 0.00 0.00 4.30
7933 10311 2.205342 CACTAAAATGAGGGGAGGGGA 58.795 52.381 0.00 0.00 0.00 4.81
8142 10548 3.777106 TCACATCCTTCAGCAACTTCT 57.223 42.857 0.00 0.00 0.00 2.85
8209 10615 3.782992 AGAGCCATTGGTGAAGGATTTT 58.217 40.909 4.26 0.00 0.00 1.82
8254 10660 1.545706 AAGACCCTGCCTCGAGTTCC 61.546 60.000 12.31 0.00 0.00 3.62
8333 10768 1.523758 ACATCGTGTGCTTTTCTCCC 58.476 50.000 0.00 0.00 0.00 4.30
8334 10769 2.290641 ACAACATCGTGTGCTTTTCTCC 59.709 45.455 0.00 0.00 0.00 3.71
8337 10772 4.593157 TGTTACAACATCGTGTGCTTTTC 58.407 39.130 0.00 0.00 33.17 2.29
8339 10774 3.874543 TCTGTTACAACATCGTGTGCTTT 59.125 39.130 0.00 0.00 38.41 3.51
8342 10777 3.870723 TTCTGTTACAACATCGTGTGC 57.129 42.857 0.00 0.00 38.41 4.57
8343 10778 6.228273 AGAATTCTGTTACAACATCGTGTG 57.772 37.500 7.30 0.00 38.41 3.82
8462 10935 1.270550 CACCACATTTCTTGCTGGGTC 59.729 52.381 0.00 0.00 33.39 4.46
8468 10941 1.956477 ACTGTCCACCACATTTCTTGC 59.044 47.619 0.00 0.00 33.23 4.01
8472 10990 5.940470 AGAGAAATACTGTCCACCACATTTC 59.060 40.000 0.00 0.00 33.23 2.17
8554 11074 3.769844 TCGAGGAGGTTCTTAAGAGCAAT 59.230 43.478 19.41 8.53 0.00 3.56
8622 11142 7.276438 GCCTTTCCAAATATGTTGTGATCTTTC 59.724 37.037 0.00 0.00 0.00 2.62
8636 11156 7.838079 ACTATATGCATTGCCTTTCCAAATA 57.162 32.000 3.54 0.00 0.00 1.40
8672 11193 8.100791 TGGTACTTTTGAGTTAGCATCAGTTAT 58.899 33.333 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.