Multiple sequence alignment - TraesCS5A01G258700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G258700 chr5A 100.000 4988 0 0 1 4988 473303310 473298323 0.000000e+00 9212.0
1 TraesCS5A01G258700 chr5A 87.578 322 27 6 3658 3969 473240331 473240013 1.320000e-95 361.0
2 TraesCS5A01G258700 chr5A 87.025 316 34 4 3658 3969 473205298 473204986 2.860000e-92 350.0
3 TraesCS5A01G258700 chr5A 88.153 287 24 4 3667 3945 473101937 473101653 2.880000e-87 333.0
4 TraesCS5A01G258700 chr5A 78.510 349 48 13 242 570 605366931 605366590 2.350000e-48 204.0
5 TraesCS5A01G258700 chr5A 95.968 124 5 0 4863 4986 636695067 636694944 8.470000e-48 202.0
6 TraesCS5A01G258700 chr5A 93.600 125 7 1 4863 4987 548714944 548714821 8.530000e-43 185.0
7 TraesCS5A01G258700 chr3D 90.201 1245 102 9 2342 3571 607539664 607538425 0.000000e+00 1605.0
8 TraesCS5A01G258700 chr3D 73.548 310 51 23 245 532 603747703 603748003 6.880000e-14 89.8
9 TraesCS5A01G258700 chrUn 89.735 1247 111 4 2342 3572 62667642 62666397 0.000000e+00 1578.0
10 TraesCS5A01G258700 chrUn 86.354 938 104 13 2652 3573 12273890 12274819 0.000000e+00 1002.0
11 TraesCS5A01G258700 chr2D 89.326 1246 122 2 2342 3577 618689736 618688492 0.000000e+00 1554.0
12 TraesCS5A01G258700 chr2D 88.477 1241 126 10 2342 3568 15790568 15789331 0.000000e+00 1483.0
13 TraesCS5A01G258700 chr2D 79.714 350 43 16 242 570 92739023 92738681 1.400000e-55 228.0
14 TraesCS5A01G258700 chr2D 96.850 127 4 0 4862 4988 78414822 78414948 3.910000e-51 213.0
15 TraesCS5A01G258700 chr2D 82.627 236 34 5 243 473 229633906 229633673 8.470000e-48 202.0
16 TraesCS5A01G258700 chr4D 89.338 1238 119 8 2342 3568 107700119 107698884 0.000000e+00 1543.0
17 TraesCS5A01G258700 chr4D 89.842 758 64 4 2342 3089 462815332 462816086 0.000000e+00 961.0
18 TraesCS5A01G258700 chr4D 89.509 753 68 2 2342 3084 494104716 494103965 0.000000e+00 942.0
19 TraesCS5A01G258700 chr5B 92.981 1040 34 12 584 1601 439971374 439970352 0.000000e+00 1480.0
20 TraesCS5A01G258700 chr5B 90.942 1104 62 14 3662 4751 439969563 439968484 0.000000e+00 1450.0
21 TraesCS5A01G258700 chr5B 93.900 623 35 2 1677 2298 439970326 439969706 0.000000e+00 937.0
22 TraesCS5A01G258700 chr5B 88.613 483 26 16 98 570 439984081 439983618 1.210000e-155 560.0
23 TraesCS5A01G258700 chr5B 90.773 401 24 8 175 570 439972059 439971667 1.590000e-144 523.0
24 TraesCS5A01G258700 chr5B 88.824 170 15 2 3802 3969 439956176 439956009 6.550000e-49 206.0
25 TraesCS5A01G258700 chr5B 94.017 117 6 1 7 123 439972172 439972057 5.130000e-40 176.0
26 TraesCS5A01G258700 chr5B 91.667 108 8 1 3658 3765 439958690 439958584 1.120000e-31 148.0
27 TraesCS5A01G258700 chr5B 96.296 81 3 0 4759 4839 439961854 439961774 3.130000e-27 134.0
28 TraesCS5A01G258700 chr5D 88.534 1221 127 4 2342 3551 517363449 517364667 0.000000e+00 1467.0
29 TraesCS5A01G258700 chr5D 92.879 983 40 8 685 1667 370714190 370713238 0.000000e+00 1400.0
30 TraesCS5A01G258700 chr5D 88.108 925 96 4 2657 3570 396440922 396441843 0.000000e+00 1086.0
31 TraesCS5A01G258700 chr5D 90.675 622 44 10 2966 3575 553029957 553029338 0.000000e+00 815.0
32 TraesCS5A01G258700 chr5D 92.414 580 17 8 3 570 370715183 370714619 0.000000e+00 802.0
33 TraesCS5A01G258700 chr5D 86.983 653 61 12 1677 2311 370713168 370712522 0.000000e+00 713.0
34 TraesCS5A01G258700 chr5D 84.625 761 50 26 3662 4399 370712429 370711713 0.000000e+00 695.0
35 TraesCS5A01G258700 chr5D 88.053 226 19 6 3658 3879 370632500 370632279 1.380000e-65 261.0
36 TraesCS5A01G258700 chr5D 95.238 126 6 0 4863 4988 555569983 555570108 3.050000e-47 200.0
37 TraesCS5A01G258700 chr5D 76.103 272 36 15 285 540 246656465 246656723 1.130000e-21 115.0
38 TraesCS5A01G258700 chr5D 74.912 283 43 21 214 475 181878618 181878343 2.460000e-18 104.0
39 TraesCS5A01G258700 chr5D 100.000 39 0 0 646 684 370714246 370714208 6.930000e-09 73.1
40 TraesCS5A01G258700 chr4A 86.472 1264 133 11 2342 3570 725816679 725815419 0.000000e+00 1352.0
41 TraesCS5A01G258700 chr4A 78.470 353 41 20 242 570 54724999 54725340 1.100000e-46 198.0
42 TraesCS5A01G258700 chr7D 89.710 758 66 3 2342 3089 34072228 34071473 0.000000e+00 957.0
43 TraesCS5A01G258700 chr7D 79.574 235 36 8 243 473 468510351 468510125 1.860000e-34 158.0
44 TraesCS5A01G258700 chr7D 76.014 296 42 13 279 570 146182895 146183165 5.240000e-25 126.0
45 TraesCS5A01G258700 chr1D 89.572 748 66 3 2342 3078 394847980 394847234 0.000000e+00 939.0
46 TraesCS5A01G258700 chr1D 88.660 679 66 6 2905 3572 32439796 32440474 0.000000e+00 817.0
47 TraesCS5A01G258700 chr7B 89.052 749 74 4 2342 3084 641105644 641104898 0.000000e+00 922.0
48 TraesCS5A01G258700 chr7B 76.823 384 49 18 214 570 491919144 491918774 3.970000e-41 180.0
49 TraesCS5A01G258700 chr6A 87.065 804 98 6 2640 3442 14004488 14005286 0.000000e+00 904.0
50 TraesCS5A01G258700 chr6A 94.488 127 7 0 4862 4988 40544863 40544989 3.940000e-46 196.0
51 TraesCS5A01G258700 chr6A 93.651 126 8 0 4863 4988 6292984 6292859 6.590000e-44 189.0
52 TraesCS5A01G258700 chr6B 78.534 382 50 14 214 570 538943861 538944235 6.500000e-54 222.0
53 TraesCS5A01G258700 chr3A 93.701 127 8 0 4862 4988 686871386 686871512 1.830000e-44 191.0
54 TraesCS5A01G258700 chr3A 93.651 126 8 0 4863 4988 501410917 501411042 6.590000e-44 189.0
55 TraesCS5A01G258700 chr1A 93.651 126 8 0 4863 4988 18321566 18321691 6.590000e-44 189.0
56 TraesCS5A01G258700 chr6D 92.157 51 4 0 412 462 86373943 86373993 6.930000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G258700 chr5A 473298323 473303310 4987 True 9212.00 9212 100.0000 1 4988 1 chr5A.!!$R4 4987
1 TraesCS5A01G258700 chr3D 607538425 607539664 1239 True 1605.00 1605 90.2010 2342 3571 1 chr3D.!!$R1 1229
2 TraesCS5A01G258700 chrUn 62666397 62667642 1245 True 1578.00 1578 89.7350 2342 3572 1 chrUn.!!$R1 1230
3 TraesCS5A01G258700 chrUn 12273890 12274819 929 False 1002.00 1002 86.3540 2652 3573 1 chrUn.!!$F1 921
4 TraesCS5A01G258700 chr2D 618688492 618689736 1244 True 1554.00 1554 89.3260 2342 3577 1 chr2D.!!$R4 1235
5 TraesCS5A01G258700 chr2D 15789331 15790568 1237 True 1483.00 1483 88.4770 2342 3568 1 chr2D.!!$R1 1226
6 TraesCS5A01G258700 chr4D 107698884 107700119 1235 True 1543.00 1543 89.3380 2342 3568 1 chr4D.!!$R1 1226
7 TraesCS5A01G258700 chr4D 462815332 462816086 754 False 961.00 961 89.8420 2342 3089 1 chr4D.!!$F1 747
8 TraesCS5A01G258700 chr4D 494103965 494104716 751 True 942.00 942 89.5090 2342 3084 1 chr4D.!!$R2 742
9 TraesCS5A01G258700 chr5B 439968484 439972172 3688 True 913.20 1480 92.5226 7 4751 5 chr5B.!!$R3 4744
10 TraesCS5A01G258700 chr5D 517363449 517364667 1218 False 1467.00 1467 88.5340 2342 3551 1 chr5D.!!$F3 1209
11 TraesCS5A01G258700 chr5D 396440922 396441843 921 False 1086.00 1086 88.1080 2657 3570 1 chr5D.!!$F2 913
12 TraesCS5A01G258700 chr5D 553029338 553029957 619 True 815.00 815 90.6750 2966 3575 1 chr5D.!!$R3 609
13 TraesCS5A01G258700 chr5D 370711713 370715183 3470 True 736.62 1400 91.3802 3 4399 5 chr5D.!!$R4 4396
14 TraesCS5A01G258700 chr4A 725815419 725816679 1260 True 1352.00 1352 86.4720 2342 3570 1 chr4A.!!$R1 1228
15 TraesCS5A01G258700 chr7D 34071473 34072228 755 True 957.00 957 89.7100 2342 3089 1 chr7D.!!$R1 747
16 TraesCS5A01G258700 chr1D 394847234 394847980 746 True 939.00 939 89.5720 2342 3078 1 chr1D.!!$R1 736
17 TraesCS5A01G258700 chr1D 32439796 32440474 678 False 817.00 817 88.6600 2905 3572 1 chr1D.!!$F1 667
18 TraesCS5A01G258700 chr7B 641104898 641105644 746 True 922.00 922 89.0520 2342 3084 1 chr7B.!!$R2 742
19 TraesCS5A01G258700 chr6A 14004488 14005286 798 False 904.00 904 87.0650 2640 3442 1 chr6A.!!$F1 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 130 0.652592 CTGGCGAAATCATGTCCGTC 59.347 55.0 0.00 0.0 0.00 4.79 F
896 1223 0.732538 GCACGCAGCCGCTTTAATTT 60.733 50.0 0.00 0.0 38.22 1.82 F
2294 2707 0.250234 TCATGAGCAGGGGAGTTTCG 59.750 55.0 0.00 0.0 0.00 3.46 F
3040 3505 0.039527 GCGCAATTTTCACCGGAAGT 60.040 50.0 9.46 0.0 33.82 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1210 1545 0.041386 AAAGGCGGAGGAGTAGGAGT 59.959 55.0 0.00 0.0 0.00 3.85 R
2701 3142 0.035317 GATGGTGGCACTGTCTGACA 59.965 55.0 18.45 10.5 34.41 3.58 R
3401 3874 0.250640 GGATGCTGCGGGATCTCATT 60.251 55.0 24.23 0.0 39.71 2.57 R
4816 5401 0.035739 GGCTGGTCGGTTAAAGTGGA 59.964 55.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 130 0.652592 CTGGCGAAATCATGTCCGTC 59.347 55.000 0.00 0.00 0.00 4.79
145 154 4.537433 GCGCCTCCCTACCAGCAG 62.537 72.222 0.00 0.00 0.00 4.24
166 175 1.302993 CGACCAACCCGTCCCATTT 60.303 57.895 0.00 0.00 0.00 2.32
167 176 1.582610 CGACCAACCCGTCCCATTTG 61.583 60.000 0.00 0.00 0.00 2.32
168 177 1.873270 GACCAACCCGTCCCATTTGC 61.873 60.000 0.00 0.00 0.00 3.68
169 178 2.645192 CCAACCCGTCCCATTTGCC 61.645 63.158 0.00 0.00 0.00 4.52
170 179 2.675075 AACCCGTCCCATTTGCCG 60.675 61.111 0.00 0.00 0.00 5.69
173 182 3.140141 CCGTCCCATTTGCCGCAT 61.140 61.111 0.00 0.00 0.00 4.73
174 183 2.709883 CCGTCCCATTTGCCGCATT 61.710 57.895 0.00 0.00 0.00 3.56
191 200 0.822164 ATTCGGTCAGGTCTAACGGG 59.178 55.000 0.00 0.00 0.00 5.28
197 206 1.078426 CAGGTCTAACGGGCCCAAG 60.078 63.158 24.92 16.00 41.53 3.61
206 215 3.373565 GGGCCCAAGGAGCGTTTG 61.374 66.667 19.95 0.00 0.00 2.93
405 417 9.725019 ATCAATATTGAATAATGCCGAAGAGTA 57.275 29.630 21.50 0.00 41.13 2.59
406 418 9.554395 TCAATATTGAATAATGCCGAAGAGTAA 57.446 29.630 15.82 0.00 33.55 2.24
501 513 3.933861 ACATCACCCTCTTAACATCCC 57.066 47.619 0.00 0.00 0.00 3.85
549 561 8.336806 TGAAACTTTCAAACATGATTTTCATGC 58.663 29.630 15.53 0.00 45.89 4.06
567 579 7.467557 TTCATGCATGAAGTTTTCTTTGAAC 57.532 32.000 33.08 0.00 41.51 3.18
568 580 6.808829 TCATGCATGAAGTTTTCTTTGAACT 58.191 32.000 26.87 0.00 40.61 3.01
614 906 2.355818 CCTGGCCTTGTAGTAACTTCCC 60.356 54.545 3.32 0.00 0.00 3.97
693 1020 1.068281 ACACATGTTTCGGCATTGCAA 59.932 42.857 11.39 0.00 0.00 4.08
741 1068 4.081420 TCTCCTACTTTGCTGCTCTAAAGG 60.081 45.833 13.39 9.32 38.03 3.11
771 1098 2.093447 ACCTGTGAAGAATCCGATGTCC 60.093 50.000 0.00 0.00 0.00 4.02
776 1103 4.003648 GTGAAGAATCCGATGTCCTTTGT 58.996 43.478 0.00 0.00 0.00 2.83
801 1128 3.373020 GTGCATGAGACAAAGCACG 57.627 52.632 13.52 0.00 46.35 5.34
893 1220 2.975248 TGCACGCAGCCGCTTTAA 60.975 55.556 0.00 0.00 44.83 1.52
894 1221 2.331893 TGCACGCAGCCGCTTTAAT 61.332 52.632 0.00 0.00 44.83 1.40
895 1222 1.154035 GCACGCAGCCGCTTTAATT 60.154 52.632 0.00 0.00 38.22 1.40
896 1223 0.732538 GCACGCAGCCGCTTTAATTT 60.733 50.000 0.00 0.00 38.22 1.82
897 1224 1.466697 GCACGCAGCCGCTTTAATTTA 60.467 47.619 0.00 0.00 38.22 1.40
989 1321 0.976641 TGGTAGCCACAGAGGAGTTG 59.023 55.000 0.00 0.00 41.22 3.16
1162 1494 4.864334 CGCAGGGCATCCAGGTCC 62.864 72.222 0.00 0.00 34.83 4.46
1163 1495 4.512914 GCAGGGCATCCAGGTCCC 62.513 72.222 6.19 6.19 40.36 4.46
1164 1496 3.813724 CAGGGCATCCAGGTCCCC 61.814 72.222 9.66 7.04 40.97 4.81
1208 1543 2.124778 GCCTCCTCTTCCAGCTGC 60.125 66.667 8.66 0.00 0.00 5.25
1209 1544 2.588989 CCTCCTCTTCCAGCTGCC 59.411 66.667 8.66 0.00 0.00 4.85
1210 1545 2.296365 CCTCCTCTTCCAGCTGCCA 61.296 63.158 8.66 0.00 0.00 4.92
1211 1546 1.078567 CTCCTCTTCCAGCTGCCAC 60.079 63.158 8.66 0.00 0.00 5.01
1212 1547 1.537397 TCCTCTTCCAGCTGCCACT 60.537 57.895 8.66 0.00 0.00 4.00
1213 1548 1.078567 CCTCTTCCAGCTGCCACTC 60.079 63.158 8.66 0.00 0.00 3.51
1214 1549 1.078567 CTCTTCCAGCTGCCACTCC 60.079 63.158 8.66 0.00 0.00 3.85
1215 1550 1.537397 TCTTCCAGCTGCCACTCCT 60.537 57.895 8.66 0.00 0.00 3.69
1216 1551 0.252239 TCTTCCAGCTGCCACTCCTA 60.252 55.000 8.66 0.00 0.00 2.94
1227 1562 1.076632 CACTCCTACTCCTCCGCCT 60.077 63.158 0.00 0.00 0.00 5.52
1492 1827 2.683933 GCAGAGGGGAAGGGTCGA 60.684 66.667 0.00 0.00 0.00 4.20
1589 1924 1.541588 AGTCCTACAACGGGTACGAAC 59.458 52.381 0.00 0.00 44.60 3.95
1611 1946 3.366440 ACGAAGCCGATAGTATTGGAC 57.634 47.619 19.32 10.73 39.50 4.02
1620 1955 5.043903 CCGATAGTATTGGACTTCACAGTG 58.956 45.833 10.65 0.00 39.81 3.66
1629 1964 4.780815 TGGACTTCACAGTGTCAAGAAAT 58.219 39.130 14.39 0.00 35.11 2.17
1646 1981 5.283457 AGAAATAGATGGAGCTTAGCGTT 57.717 39.130 0.00 0.00 0.00 4.84
1659 1994 3.795826 GCTTAGCGTTCCATCGTATGAGT 60.796 47.826 0.00 0.00 0.00 3.41
1664 1999 5.700846 AGCGTTCCATCGTATGAGTATTAG 58.299 41.667 0.00 0.00 0.00 1.73
1667 2002 6.444633 CGTTCCATCGTATGAGTATTAGGTT 58.555 40.000 0.00 0.00 0.00 3.50
1668 2003 7.587629 CGTTCCATCGTATGAGTATTAGGTTA 58.412 38.462 0.00 0.00 0.00 2.85
1675 2010 9.629878 ATCGTATGAGTATTAGGTTATAGAGGG 57.370 37.037 0.00 0.00 0.00 4.30
1696 2091 9.933723 AGAGGGAGTAAAATTGAATTTTTCATG 57.066 29.630 19.57 0.00 42.13 3.07
1750 2145 2.901042 CAGGTAGAAGGGCCGGTC 59.099 66.667 1.90 0.00 0.00 4.79
1792 2187 1.795768 TGTTGCAGAGAACCATCGAC 58.204 50.000 0.00 0.00 0.00 4.20
1801 2196 2.279937 GAACCATCGACGAGCAACGC 62.280 60.000 3.01 0.00 46.94 4.84
2003 2401 1.065854 GTACATGCCCTGCTCAGACTT 60.066 52.381 0.00 0.00 0.00 3.01
2007 2405 1.376553 GCCCTGCTCAGACTTGGAC 60.377 63.158 0.00 0.00 0.00 4.02
2014 2413 2.634453 TGCTCAGACTTGGACATCTCAA 59.366 45.455 0.00 0.00 0.00 3.02
2017 2416 4.094590 GCTCAGACTTGGACATCTCAATTG 59.905 45.833 0.00 0.00 0.00 2.32
2052 2451 6.201615 GTGCAGGAAAAAGAAAGATCCAAAAG 59.798 38.462 0.00 0.00 34.30 2.27
2156 2561 0.617413 AACCCAGATCAGAGCACCTG 59.383 55.000 0.00 0.22 44.27 4.00
2172 2577 1.271379 ACCTGCGCATAAGGAAACTGT 60.271 47.619 19.97 0.00 42.68 3.55
2184 2589 3.805207 AGGAAACTGTACCTTCACACAC 58.195 45.455 1.44 0.00 41.13 3.82
2226 2631 9.543018 CAAGGTATGAAAACTAAACGAATTCTC 57.457 33.333 3.52 0.00 0.00 2.87
2294 2707 0.250234 TCATGAGCAGGGGAGTTTCG 59.750 55.000 0.00 0.00 0.00 3.46
2298 2711 0.462759 GAGCAGGGGAGTTTCGGATG 60.463 60.000 0.00 0.00 0.00 3.51
2300 2713 1.452108 CAGGGGAGTTTCGGATGCC 60.452 63.158 0.00 0.00 0.00 4.40
2301 2714 1.616628 AGGGGAGTTTCGGATGCCT 60.617 57.895 0.00 0.00 0.00 4.75
2302 2715 0.326238 AGGGGAGTTTCGGATGCCTA 60.326 55.000 0.00 0.00 0.00 3.93
2303 2716 0.544697 GGGGAGTTTCGGATGCCTAA 59.455 55.000 0.00 0.00 0.00 2.69
2339 2752 5.906772 TTTATAGAAATGGAGGAGGACCC 57.093 43.478 0.00 0.00 36.73 4.46
2340 2753 2.191981 TAGAAATGGAGGAGGACCCC 57.808 55.000 0.00 0.00 36.73 4.95
2357 2770 1.527611 CCCTGGACGATGCATGCAT 60.528 57.895 32.66 32.66 39.69 3.96
2402 2815 6.010219 ACAAGGCCTTACAAAGTCATACAAT 58.990 36.000 20.00 0.00 0.00 2.71
2431 2844 5.099042 ACTAAAATCACCGTCTAGGCAAT 57.901 39.130 0.00 0.00 46.52 3.56
2459 2875 3.821600 TCGCTACTCCTATCCAGTTGATC 59.178 47.826 0.00 0.00 34.76 2.92
2482 2898 1.055040 GGATGCTGATAGTCTGGGCT 58.945 55.000 0.00 0.00 0.00 5.19
2588 3028 1.215647 GTCCGACGCACTCCTCAAT 59.784 57.895 0.00 0.00 0.00 2.57
2677 3118 2.582978 GTCTACCTTGCCCGGTCC 59.417 66.667 0.00 0.00 38.49 4.46
2690 3131 2.743928 GGTCCAGCTGCCGTCAAG 60.744 66.667 8.66 0.00 0.00 3.02
2701 3142 2.047274 CGTCAAGGCCACCACGAT 60.047 61.111 13.50 0.00 34.06 3.73
2703 3144 1.302511 GTCAAGGCCACCACGATGT 60.303 57.895 5.01 0.00 0.00 3.06
2786 3227 3.706373 ATGCCGTTGAGACCCGCT 61.706 61.111 0.00 0.00 0.00 5.52
2845 3286 2.300967 CCCCTCCAGCCAGCACTTA 61.301 63.158 0.00 0.00 0.00 2.24
2856 3297 2.218603 CCAGCACTTACTCCAAAACGT 58.781 47.619 0.00 0.00 0.00 3.99
2869 3311 2.002018 AAAACGTTGCCCCCAGGAGA 62.002 55.000 0.00 0.00 33.47 3.71
2886 3329 3.506455 AGGAGAGAGAACGACATCGAAAA 59.494 43.478 8.54 0.00 43.02 2.29
3040 3505 0.039527 GCGCAATTTTCACCGGAAGT 60.040 50.000 9.46 0.00 33.82 3.01
3061 3526 3.570638 GTCGTCCCGATCTCGCGA 61.571 66.667 9.26 9.26 38.42 5.87
3153 3618 2.606519 CCTCACCGGTCCCTCCAA 60.607 66.667 2.59 0.00 35.57 3.53
3198 3663 4.328231 CGCGGCGGATCAGATCGA 62.328 66.667 15.84 0.00 0.00 3.59
3424 3897 3.092511 ATCCCGCAGCATCCACCT 61.093 61.111 0.00 0.00 0.00 4.00
3577 4050 1.909287 GCGAGGGGGAGGGTCTATC 60.909 68.421 0.00 0.00 0.00 2.08
3578 4051 1.854874 CGAGGGGGAGGGTCTATCT 59.145 63.158 0.00 0.00 0.00 1.98
3579 4052 0.188834 CGAGGGGGAGGGTCTATCTT 59.811 60.000 0.00 0.00 0.00 2.40
3580 4053 1.413227 CGAGGGGGAGGGTCTATCTTT 60.413 57.143 0.00 0.00 0.00 2.52
3581 4054 2.050918 GAGGGGGAGGGTCTATCTTTG 58.949 57.143 0.00 0.00 0.00 2.77
3582 4055 1.369983 AGGGGGAGGGTCTATCTTTGT 59.630 52.381 0.00 0.00 0.00 2.83
3583 4056 2.206223 GGGGGAGGGTCTATCTTTGTT 58.794 52.381 0.00 0.00 0.00 2.83
3584 4057 2.581246 GGGGGAGGGTCTATCTTTGTTT 59.419 50.000 0.00 0.00 0.00 2.83
3585 4058 3.784202 GGGGGAGGGTCTATCTTTGTTTA 59.216 47.826 0.00 0.00 0.00 2.01
3586 4059 4.415846 GGGGGAGGGTCTATCTTTGTTTAT 59.584 45.833 0.00 0.00 0.00 1.40
3587 4060 5.456330 GGGGGAGGGTCTATCTTTGTTTATC 60.456 48.000 0.00 0.00 0.00 1.75
3588 4061 5.369993 GGGGAGGGTCTATCTTTGTTTATCT 59.630 44.000 0.00 0.00 0.00 1.98
3589 4062 6.557633 GGGGAGGGTCTATCTTTGTTTATCTA 59.442 42.308 0.00 0.00 0.00 1.98
3590 4063 7.237887 GGGGAGGGTCTATCTTTGTTTATCTAT 59.762 40.741 0.00 0.00 0.00 1.98
3591 4064 8.097662 GGGAGGGTCTATCTTTGTTTATCTATG 58.902 40.741 0.00 0.00 0.00 2.23
3592 4065 8.652290 GGAGGGTCTATCTTTGTTTATCTATGT 58.348 37.037 0.00 0.00 0.00 2.29
3593 4066 9.699703 GAGGGTCTATCTTTGTTTATCTATGTC 57.300 37.037 0.00 0.00 0.00 3.06
3594 4067 9.440761 AGGGTCTATCTTTGTTTATCTATGTCT 57.559 33.333 0.00 0.00 0.00 3.41
3595 4068 9.482627 GGGTCTATCTTTGTTTATCTATGTCTG 57.517 37.037 0.00 0.00 0.00 3.51
3596 4069 8.983724 GGTCTATCTTTGTTTATCTATGTCTGC 58.016 37.037 0.00 0.00 0.00 4.26
3597 4070 9.757227 GTCTATCTTTGTTTATCTATGTCTGCT 57.243 33.333 0.00 0.00 0.00 4.24
3602 4075 9.283768 TCTTTGTTTATCTATGTCTGCTTTTCA 57.716 29.630 0.00 0.00 0.00 2.69
3603 4076 9.552114 CTTTGTTTATCTATGTCTGCTTTTCAG 57.448 33.333 0.00 0.00 44.21 3.02
3612 4085 3.701205 TCTGCTTTTCAGATGCCTACA 57.299 42.857 0.00 0.00 46.34 2.74
3615 4088 5.933617 TCTGCTTTTCAGATGCCTACATAT 58.066 37.500 0.00 0.00 46.34 1.78
3755 4308 8.345565 CACAATAAGGGAAATCTACAAGTATGC 58.654 37.037 0.00 0.00 0.00 3.14
3847 4400 3.215151 CATCAGCAGCTGGAGATGAATT 58.785 45.455 22.62 0.00 40.10 2.17
3894 4447 3.559655 GTGTGACACTGTACATTGAGCAA 59.440 43.478 19.02 6.12 0.00 3.91
3898 4451 4.881273 TGACACTGTACATTGAGCAACTTT 59.119 37.500 19.02 0.00 0.00 2.66
3905 4458 9.116067 ACTGTACATTGAGCAACTTTAGTAAAA 57.884 29.630 0.00 0.00 0.00 1.52
3910 4463 8.629158 ACATTGAGCAACTTTAGTAAAACATGA 58.371 29.630 0.00 0.00 0.00 3.07
3933 4486 8.221965 TGATGTAACTACGAGACTGAATGTAT 57.778 34.615 0.00 0.00 0.00 2.29
3998 4551 0.933097 GTGCAGCCAGTATGATCACG 59.067 55.000 0.00 0.00 39.69 4.35
4053 4629 6.387465 CACCATATATAGTAGGGTCACAACG 58.613 44.000 4.32 0.00 0.00 4.10
4086 4662 1.134098 CACAACACAAGGGGTCTCAGT 60.134 52.381 0.00 0.00 0.00 3.41
4105 4681 6.019075 TCTCAGTTTACAACAACATGAGTTCG 60.019 38.462 0.00 2.40 35.28 3.95
4114 4690 4.838152 ATGAGTTCGCGGCGCCAT 62.838 61.111 28.98 19.84 0.00 4.40
4344 4929 2.974489 CTCTGTTGCAGCGCCTTGG 61.974 63.158 2.29 0.00 0.00 3.61
4345 4930 4.712425 CTGTTGCAGCGCCTTGGC 62.712 66.667 2.29 3.53 0.00 4.52
4410 4995 0.824759 AGGAACTACCCACATCTCGC 59.175 55.000 0.00 0.00 36.02 5.03
4414 4999 1.204146 ACTACCCACATCTCGCCAAT 58.796 50.000 0.00 0.00 0.00 3.16
4416 5001 0.468226 TACCCACATCTCGCCAATCC 59.532 55.000 0.00 0.00 0.00 3.01
4417 5002 1.274703 ACCCACATCTCGCCAATCCT 61.275 55.000 0.00 0.00 0.00 3.24
4427 5012 3.153130 CTCGCCAATCCTCTCTGATAGA 58.847 50.000 0.00 0.00 0.00 1.98
4485 5070 2.678336 GGGCACAGAATAAACTCTTCCG 59.322 50.000 0.00 0.00 0.00 4.30
4486 5071 2.096013 GGCACAGAATAAACTCTTCCGC 59.904 50.000 0.00 0.00 0.00 5.54
4487 5072 2.096013 GCACAGAATAAACTCTTCCGCC 59.904 50.000 0.00 0.00 0.00 6.13
4488 5073 3.334691 CACAGAATAAACTCTTCCGCCA 58.665 45.455 0.00 0.00 0.00 5.69
4489 5074 3.372206 CACAGAATAAACTCTTCCGCCAG 59.628 47.826 0.00 0.00 0.00 4.85
4506 5091 1.334869 CCAGGTTGGAATAATCTGCGC 59.665 52.381 0.00 0.00 40.96 6.09
4507 5092 1.003545 CAGGTTGGAATAATCTGCGCG 60.004 52.381 0.00 0.00 0.00 6.86
4508 5093 1.134521 AGGTTGGAATAATCTGCGCGA 60.135 47.619 12.10 3.27 0.00 5.87
4509 5094 1.873591 GGTTGGAATAATCTGCGCGAT 59.126 47.619 12.10 5.87 0.00 4.58
4510 5095 2.096218 GGTTGGAATAATCTGCGCGATC 60.096 50.000 12.10 0.00 0.00 3.69
4511 5096 2.524569 TGGAATAATCTGCGCGATCA 57.475 45.000 12.10 0.00 0.00 2.92
4512 5097 2.407090 TGGAATAATCTGCGCGATCAG 58.593 47.619 12.10 9.17 35.46 2.90
4513 5098 2.224042 TGGAATAATCTGCGCGATCAGT 60.224 45.455 12.10 0.76 35.63 3.41
4514 5099 2.802816 GGAATAATCTGCGCGATCAGTT 59.197 45.455 12.10 8.32 35.63 3.16
4515 5100 3.363378 GGAATAATCTGCGCGATCAGTTG 60.363 47.826 12.10 0.00 35.63 3.16
4516 5101 2.293677 TAATCTGCGCGATCAGTTGT 57.706 45.000 12.10 1.34 35.63 3.32
4517 5102 1.002366 AATCTGCGCGATCAGTTGTC 58.998 50.000 12.10 0.00 35.63 3.18
4518 5103 1.142185 ATCTGCGCGATCAGTTGTCG 61.142 55.000 12.10 0.00 41.77 4.35
4533 5118 3.131577 AGTTGTCGTGTCTTCAGGTTGTA 59.868 43.478 0.00 0.00 0.00 2.41
4561 5146 3.123621 CCTCAAACTGTCGCAATACTCAC 59.876 47.826 0.00 0.00 0.00 3.51
4562 5147 2.729360 TCAAACTGTCGCAATACTCACG 59.271 45.455 0.00 0.00 0.00 4.35
4563 5148 2.717580 AACTGTCGCAATACTCACGA 57.282 45.000 0.00 0.00 0.00 4.35
4566 5151 3.011513 GTCGCAATACTCACGACGT 57.988 52.632 0.00 0.00 45.52 4.34
4567 5152 1.334054 GTCGCAATACTCACGACGTT 58.666 50.000 0.00 0.00 45.52 3.99
4570 5155 1.057285 CGCAATACTCACGACGTTCAC 59.943 52.381 0.00 0.00 0.00 3.18
4604 5189 2.377628 AAACGCTCCCGCTGAAGACA 62.378 55.000 0.00 0.00 38.22 3.41
4606 5191 1.320344 ACGCTCCCGCTGAAGACATA 61.320 55.000 0.00 0.00 38.22 2.29
4623 5208 3.947196 GACATACCACATCCTTGCAATCA 59.053 43.478 0.00 0.00 0.00 2.57
4678 5263 0.386113 GACTGCGGGATAGTCTGGTC 59.614 60.000 0.00 0.00 41.00 4.02
4679 5264 1.360551 CTGCGGGATAGTCTGGTCG 59.639 63.158 0.00 0.00 0.00 4.79
4689 5274 3.071206 TCTGGTCGGCTCCTCTGC 61.071 66.667 0.00 0.00 0.00 4.26
4712 5297 1.571773 GGCACCAGGGGTAGAACCAT 61.572 60.000 0.00 0.00 41.02 3.55
4731 5316 4.261801 CCATAAACGGAGTGTCTTGGAAT 58.738 43.478 0.00 0.00 45.00 3.01
4736 5321 1.808411 GGAGTGTCTTGGAATTCGCA 58.192 50.000 0.00 0.00 0.00 5.10
4737 5322 1.734465 GGAGTGTCTTGGAATTCGCAG 59.266 52.381 0.00 0.00 0.00 5.18
4740 5325 0.322456 TGTCTTGGAATTCGCAGGGG 60.322 55.000 0.00 0.00 0.00 4.79
4748 5333 1.204467 GAATTCGCAGGGGAAATGCAA 59.796 47.619 2.81 0.00 44.05 4.08
4751 5336 2.274645 CGCAGGGGAAATGCAACCA 61.275 57.895 0.00 0.00 44.05 3.67
4752 5337 1.293179 GCAGGGGAAATGCAACCAC 59.707 57.895 0.00 0.00 43.31 4.16
4753 5338 1.470996 GCAGGGGAAATGCAACCACA 61.471 55.000 11.68 0.00 43.31 4.17
4754 5339 1.269012 CAGGGGAAATGCAACCACAT 58.731 50.000 11.68 0.00 31.04 3.21
4755 5340 1.205417 CAGGGGAAATGCAACCACATC 59.795 52.381 11.68 0.00 31.04 3.06
4756 5341 0.536724 GGGGAAATGCAACCACATCC 59.463 55.000 0.00 0.00 0.00 3.51
4757 5342 1.560505 GGGAAATGCAACCACATCCT 58.439 50.000 0.00 0.00 32.39 3.24
4758 5343 2.622977 GGGGAAATGCAACCACATCCTA 60.623 50.000 0.00 0.00 32.39 2.94
4759 5344 3.096092 GGGAAATGCAACCACATCCTAA 58.904 45.455 0.00 0.00 32.39 2.69
4760 5345 3.706086 GGGAAATGCAACCACATCCTAAT 59.294 43.478 0.00 0.00 32.39 1.73
4761 5346 4.892934 GGGAAATGCAACCACATCCTAATA 59.107 41.667 0.00 0.00 32.39 0.98
4762 5347 5.362430 GGGAAATGCAACCACATCCTAATAA 59.638 40.000 0.00 0.00 32.39 1.40
4763 5348 6.273071 GGAAATGCAACCACATCCTAATAAC 58.727 40.000 0.00 0.00 0.00 1.89
4764 5349 5.852282 AATGCAACCACATCCTAATAACC 57.148 39.130 0.00 0.00 0.00 2.85
4765 5350 3.275143 TGCAACCACATCCTAATAACCG 58.725 45.455 0.00 0.00 0.00 4.44
4766 5351 2.032924 GCAACCACATCCTAATAACCGC 59.967 50.000 0.00 0.00 0.00 5.68
4767 5352 3.541632 CAACCACATCCTAATAACCGCT 58.458 45.455 0.00 0.00 0.00 5.52
4768 5353 4.699637 CAACCACATCCTAATAACCGCTA 58.300 43.478 0.00 0.00 0.00 4.26
4769 5354 4.602340 ACCACATCCTAATAACCGCTAG 57.398 45.455 0.00 0.00 0.00 3.42
4770 5355 3.244112 ACCACATCCTAATAACCGCTAGC 60.244 47.826 4.06 4.06 0.00 3.42
4771 5356 3.244078 CCACATCCTAATAACCGCTAGCA 60.244 47.826 16.45 0.00 0.00 3.49
4772 5357 4.563580 CCACATCCTAATAACCGCTAGCAT 60.564 45.833 16.45 2.56 0.00 3.79
4773 5358 4.997395 CACATCCTAATAACCGCTAGCATT 59.003 41.667 16.45 10.86 0.00 3.56
4774 5359 4.997395 ACATCCTAATAACCGCTAGCATTG 59.003 41.667 16.45 4.90 0.00 2.82
4775 5360 3.399330 TCCTAATAACCGCTAGCATTGC 58.601 45.455 16.45 0.00 0.00 3.56
4776 5361 2.484264 CCTAATAACCGCTAGCATTGCC 59.516 50.000 16.45 0.00 0.00 4.52
4777 5362 0.944386 AATAACCGCTAGCATTGCCG 59.056 50.000 16.45 1.78 0.00 5.69
4778 5363 1.507141 ATAACCGCTAGCATTGCCGC 61.507 55.000 16.45 7.70 0.00 6.53
4779 5364 2.860972 TAACCGCTAGCATTGCCGCA 62.861 55.000 16.45 0.00 0.00 5.69
4780 5365 3.282157 CCGCTAGCATTGCCGCAT 61.282 61.111 16.45 0.00 0.00 4.73
4781 5366 2.250485 CGCTAGCATTGCCGCATC 59.750 61.111 16.45 0.00 0.00 3.91
4782 5367 2.641559 GCTAGCATTGCCGCATCC 59.358 61.111 10.63 0.00 0.00 3.51
4783 5368 1.895707 GCTAGCATTGCCGCATCCT 60.896 57.895 10.63 0.00 0.00 3.24
4784 5369 1.947013 CTAGCATTGCCGCATCCTG 59.053 57.895 4.70 0.00 0.00 3.86
4785 5370 2.126417 CTAGCATTGCCGCATCCTGC 62.126 60.000 4.70 12.69 40.69 4.85
4786 5371 2.890201 TAGCATTGCCGCATCCTGCA 62.890 55.000 19.31 0.00 45.36 4.41
4799 5384 2.956987 CTGCAAGGCGTCAAAGGG 59.043 61.111 0.00 0.00 0.00 3.95
4800 5385 2.597217 TGCAAGGCGTCAAAGGGG 60.597 61.111 0.00 0.00 0.00 4.79
4801 5386 3.373565 GCAAGGCGTCAAAGGGGG 61.374 66.667 0.00 0.00 0.00 5.40
4816 5401 3.223589 GGGGTTTGTGCGTGGCTT 61.224 61.111 0.00 0.00 0.00 4.35
4817 5402 2.335011 GGGTTTGTGCGTGGCTTC 59.665 61.111 0.00 0.00 0.00 3.86
4818 5403 2.335011 GGTTTGTGCGTGGCTTCC 59.665 61.111 0.00 0.00 0.00 3.46
4819 5404 2.485795 GGTTTGTGCGTGGCTTCCA 61.486 57.895 0.00 0.00 0.00 3.53
4830 5415 1.886886 TGGCTTCCACTTTAACCGAC 58.113 50.000 0.00 0.00 0.00 4.79
4831 5416 1.162698 GGCTTCCACTTTAACCGACC 58.837 55.000 0.00 0.00 0.00 4.79
4832 5417 1.543871 GGCTTCCACTTTAACCGACCA 60.544 52.381 0.00 0.00 0.00 4.02
4833 5418 1.804748 GCTTCCACTTTAACCGACCAG 59.195 52.381 0.00 0.00 0.00 4.00
4834 5419 1.804748 CTTCCACTTTAACCGACCAGC 59.195 52.381 0.00 0.00 0.00 4.85
4835 5420 0.035739 TCCACTTTAACCGACCAGCC 59.964 55.000 0.00 0.00 0.00 4.85
4836 5421 1.296056 CCACTTTAACCGACCAGCCG 61.296 60.000 0.00 0.00 0.00 5.52
4867 5452 4.198625 CTGCTGCAGCTCCACTAC 57.801 61.111 36.61 8.49 42.66 2.73
4868 5453 1.449246 CTGCTGCAGCTCCACTACC 60.449 63.158 36.61 7.74 42.66 3.18
4869 5454 2.176314 CTGCTGCAGCTCCACTACCA 62.176 60.000 36.61 14.40 42.66 3.25
4870 5455 1.449246 GCTGCAGCTCCACTACCAG 60.449 63.158 31.33 0.00 38.21 4.00
4871 5456 1.892819 GCTGCAGCTCCACTACCAGA 61.893 60.000 31.33 0.00 38.21 3.86
4872 5457 0.610174 CTGCAGCTCCACTACCAGAA 59.390 55.000 0.00 0.00 31.70 3.02
4873 5458 1.209019 CTGCAGCTCCACTACCAGAAT 59.791 52.381 0.00 0.00 31.70 2.40
4874 5459 2.432146 CTGCAGCTCCACTACCAGAATA 59.568 50.000 0.00 0.00 31.70 1.75
4875 5460 2.837591 TGCAGCTCCACTACCAGAATAA 59.162 45.455 0.00 0.00 0.00 1.40
4876 5461 3.263170 TGCAGCTCCACTACCAGAATAAA 59.737 43.478 0.00 0.00 0.00 1.40
4877 5462 4.080356 TGCAGCTCCACTACCAGAATAAAT 60.080 41.667 0.00 0.00 0.00 1.40
4878 5463 4.274459 GCAGCTCCACTACCAGAATAAATG 59.726 45.833 0.00 0.00 0.00 2.32
4879 5464 5.674525 CAGCTCCACTACCAGAATAAATGA 58.325 41.667 0.00 0.00 0.00 2.57
4880 5465 5.525378 CAGCTCCACTACCAGAATAAATGAC 59.475 44.000 0.00 0.00 0.00 3.06
4881 5466 4.508124 GCTCCACTACCAGAATAAATGACG 59.492 45.833 0.00 0.00 0.00 4.35
4882 5467 5.661458 CTCCACTACCAGAATAAATGACGT 58.339 41.667 0.00 0.00 0.00 4.34
4883 5468 6.045072 TCCACTACCAGAATAAATGACGTT 57.955 37.500 0.00 0.00 0.00 3.99
4884 5469 5.872617 TCCACTACCAGAATAAATGACGTTG 59.127 40.000 0.00 0.00 0.00 4.10
4885 5470 5.447279 CCACTACCAGAATAAATGACGTTGC 60.447 44.000 0.00 0.00 0.00 4.17
4886 5471 4.634443 ACTACCAGAATAAATGACGTTGCC 59.366 41.667 0.00 0.00 0.00 4.52
4887 5472 2.418628 ACCAGAATAAATGACGTTGCCG 59.581 45.455 0.00 0.00 40.83 5.69
4888 5473 2.675844 CCAGAATAAATGACGTTGCCGA 59.324 45.455 0.00 0.00 37.88 5.54
4889 5474 3.485216 CCAGAATAAATGACGTTGCCGAC 60.485 47.826 0.00 0.00 37.88 4.79
4899 5484 3.132863 GTTGCCGACGGTGTTATCT 57.867 52.632 16.73 0.00 0.00 1.98
4900 5485 2.282701 GTTGCCGACGGTGTTATCTA 57.717 50.000 16.73 0.00 0.00 1.98
4901 5486 2.817901 GTTGCCGACGGTGTTATCTAT 58.182 47.619 16.73 0.00 0.00 1.98
4902 5487 2.502213 TGCCGACGGTGTTATCTATG 57.498 50.000 16.73 0.00 0.00 2.23
4903 5488 1.137513 GCCGACGGTGTTATCTATGC 58.862 55.000 16.73 0.00 0.00 3.14
4904 5489 1.779569 CCGACGGTGTTATCTATGCC 58.220 55.000 5.48 0.00 0.00 4.40
4905 5490 1.405461 CGACGGTGTTATCTATGCCG 58.595 55.000 0.00 0.00 46.83 5.69
4906 5491 1.002142 CGACGGTGTTATCTATGCCGA 60.002 52.381 8.31 0.00 44.57 5.54
4907 5492 2.391879 GACGGTGTTATCTATGCCGAC 58.608 52.381 8.31 0.00 44.57 4.79
4908 5493 1.268896 ACGGTGTTATCTATGCCGACG 60.269 52.381 8.31 0.00 44.57 5.12
4909 5494 1.779569 GGTGTTATCTATGCCGACGG 58.220 55.000 10.29 10.29 0.00 4.79
4927 5512 2.343758 CCCCCGTCGGCATAGATG 59.656 66.667 5.50 0.00 0.00 2.90
4928 5513 2.343758 CCCCGTCGGCATAGATGG 59.656 66.667 5.50 7.19 44.79 3.51
4934 5519 3.138205 CGTCGGCATAGATGGAGATAC 57.862 52.381 0.00 0.00 0.00 2.24
4935 5520 2.476352 CGTCGGCATAGATGGAGATACG 60.476 54.545 0.00 0.00 0.00 3.06
4936 5521 1.472878 TCGGCATAGATGGAGATACGC 59.527 52.381 0.00 0.00 0.00 4.42
4937 5522 1.469940 CGGCATAGATGGAGATACGCC 60.470 57.143 0.00 0.00 34.91 5.68
4938 5523 1.469940 GGCATAGATGGAGATACGCCG 60.470 57.143 0.00 0.00 0.00 6.46
4939 5524 1.472878 GCATAGATGGAGATACGCCGA 59.527 52.381 0.00 0.00 0.00 5.54
4940 5525 2.732597 GCATAGATGGAGATACGCCGAC 60.733 54.545 0.00 0.00 0.00 4.79
4942 5527 1.081376 GATGGAGATACGCCGACGG 60.081 63.158 10.29 10.29 46.04 4.79
4943 5528 3.208884 ATGGAGATACGCCGACGGC 62.209 63.158 29.10 29.10 46.75 5.68
4953 5538 4.367023 CCGACGGCCGAGGAAACA 62.367 66.667 35.90 0.00 41.76 2.83
4954 5539 3.110178 CGACGGCCGAGGAAACAC 61.110 66.667 35.90 10.71 41.76 3.32
4955 5540 2.741211 GACGGCCGAGGAAACACC 60.741 66.667 35.90 4.89 39.35 4.16
4957 5542 4.675029 CGGCCGAGGAAACACCGT 62.675 66.667 24.07 0.00 44.74 4.83
4958 5543 2.658422 GGCCGAGGAAACACCGTA 59.342 61.111 0.00 0.00 44.74 4.02
4959 5544 1.447314 GGCCGAGGAAACACCGTAG 60.447 63.158 0.00 0.00 44.74 3.51
4971 5556 4.396854 CCGTAGGCGTACAGAAGC 57.603 61.111 16.21 0.00 46.14 3.86
4976 5561 2.879462 GGCGTACAGAAGCCGTCG 60.879 66.667 0.00 0.00 44.22 5.12
4977 5562 2.879462 GCGTACAGAAGCCGTCGG 60.879 66.667 6.99 6.99 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.985911 ACACTATAGTTATTTGGAAGGCGT 58.014 37.500 1.56 0.00 0.00 5.68
65 66 0.852842 TGGGCCATTTCTCTATGGGG 59.147 55.000 0.00 0.00 44.35 4.96
121 130 1.300233 GTAGGGAGGCGCATCTTCG 60.300 63.158 22.57 0.00 0.00 3.79
169 178 1.278238 GTTAGACCTGACCGAATGCG 58.722 55.000 0.00 0.00 37.24 4.73
170 179 1.278238 CGTTAGACCTGACCGAATGC 58.722 55.000 0.00 0.00 0.00 3.56
171 180 1.470979 CCCGTTAGACCTGACCGAATG 60.471 57.143 0.00 0.00 0.00 2.67
172 181 0.822164 CCCGTTAGACCTGACCGAAT 59.178 55.000 0.00 0.00 0.00 3.34
173 182 1.880819 GCCCGTTAGACCTGACCGAA 61.881 60.000 0.00 0.00 0.00 4.30
174 183 2.345760 GCCCGTTAGACCTGACCGA 61.346 63.158 0.00 0.00 0.00 4.69
191 200 0.318699 GTTTCAAACGCTCCTTGGGC 60.319 55.000 0.00 0.00 0.00 5.36
206 215 4.752101 CCATGTGATATTCTCTCCCGTTTC 59.248 45.833 0.00 0.00 0.00 2.78
405 417 7.490962 TTCAGTGATGAATAGTGACGTTTTT 57.509 32.000 0.00 0.00 0.00 1.94
406 418 7.672983 ATTCAGTGATGAATAGTGACGTTTT 57.327 32.000 1.73 0.00 36.82 2.43
567 579 6.621596 GCAGGCTTTGTAGTAACTTCATGAAG 60.622 42.308 29.74 29.74 43.79 3.02
568 580 5.181245 GCAGGCTTTGTAGTAACTTCATGAA 59.819 40.000 8.12 8.12 0.00 2.57
570 582 4.142600 GGCAGGCTTTGTAGTAACTTCATG 60.143 45.833 0.00 0.00 0.00 3.07
571 583 4.010349 GGCAGGCTTTGTAGTAACTTCAT 58.990 43.478 0.00 0.00 0.00 2.57
572 584 3.408634 GGCAGGCTTTGTAGTAACTTCA 58.591 45.455 0.00 0.00 0.00 3.02
573 585 2.747989 GGGCAGGCTTTGTAGTAACTTC 59.252 50.000 0.00 0.00 0.00 3.01
574 586 2.375509 AGGGCAGGCTTTGTAGTAACTT 59.624 45.455 0.00 0.00 0.00 2.66
575 587 1.985895 AGGGCAGGCTTTGTAGTAACT 59.014 47.619 0.00 0.00 0.00 2.24
576 588 2.084546 CAGGGCAGGCTTTGTAGTAAC 58.915 52.381 0.00 0.00 0.00 2.50
578 590 0.618458 CCAGGGCAGGCTTTGTAGTA 59.382 55.000 0.00 0.00 0.00 1.82
579 591 1.380302 CCAGGGCAGGCTTTGTAGT 59.620 57.895 0.00 0.00 0.00 2.73
580 592 4.326255 CCAGGGCAGGCTTTGTAG 57.674 61.111 0.00 0.00 0.00 2.74
590 882 0.326927 GTTACTACAAGGCCAGGGCA 59.673 55.000 16.94 0.00 44.11 5.36
614 906 2.301346 GTCTTATGGCCAAGTGGATGG 58.699 52.381 10.96 0.00 43.70 3.51
693 1020 2.149578 AGACGTGTACGACAAGCTAGT 58.850 47.619 11.79 0.00 43.02 2.57
741 1068 2.724977 TCTTCACAGGTGTGTCGATC 57.275 50.000 9.87 0.00 45.76 3.69
771 1098 5.342433 TGTCTCATGCACTTTGAAACAAAG 58.658 37.500 18.57 18.57 0.00 2.77
776 1103 4.142204 TGCTTTGTCTCATGCACTTTGAAA 60.142 37.500 0.00 0.00 0.00 2.69
800 1127 1.398390 GAGCACATAGGGTTTGCTTCG 59.602 52.381 0.00 0.00 46.62 3.79
801 1128 1.745653 GGAGCACATAGGGTTTGCTTC 59.254 52.381 0.00 0.00 46.62 3.86
812 1139 5.193728 AGAAGGGAAATAAAGGGAGCACATA 59.806 40.000 0.00 0.00 0.00 2.29
893 1220 5.706369 TGCATTTTGCTCTTGCCAATTAAAT 59.294 32.000 0.75 0.00 45.31 1.40
894 1221 5.049543 GTGCATTTTGCTCTTGCCAATTAAA 60.050 36.000 0.00 0.00 45.31 1.52
895 1222 4.451774 GTGCATTTTGCTCTTGCCAATTAA 59.548 37.500 0.00 0.00 45.31 1.40
896 1223 3.995705 GTGCATTTTGCTCTTGCCAATTA 59.004 39.130 0.00 0.00 45.31 1.40
897 1224 2.809696 GTGCATTTTGCTCTTGCCAATT 59.190 40.909 0.00 0.00 45.31 2.32
989 1321 1.996292 TGAAGACATGCTACAGCGAC 58.004 50.000 0.00 0.00 45.83 5.19
1208 1543 2.128507 GGCGGAGGAGTAGGAGTGG 61.129 68.421 0.00 0.00 0.00 4.00
1209 1544 0.684805 AAGGCGGAGGAGTAGGAGTG 60.685 60.000 0.00 0.00 0.00 3.51
1210 1545 0.041386 AAAGGCGGAGGAGTAGGAGT 59.959 55.000 0.00 0.00 0.00 3.85
1211 1546 0.747852 GAAAGGCGGAGGAGTAGGAG 59.252 60.000 0.00 0.00 0.00 3.69
1212 1547 1.035932 CGAAAGGCGGAGGAGTAGGA 61.036 60.000 0.00 0.00 36.03 2.94
1213 1548 1.321074 ACGAAAGGCGGAGGAGTAGG 61.321 60.000 0.00 0.00 46.49 3.18
1214 1549 0.179134 CACGAAAGGCGGAGGAGTAG 60.179 60.000 0.00 0.00 46.49 2.57
1215 1550 1.888018 CACGAAAGGCGGAGGAGTA 59.112 57.895 0.00 0.00 46.49 2.59
1216 1551 2.657237 CACGAAAGGCGGAGGAGT 59.343 61.111 0.00 0.00 46.49 3.85
1567 1902 0.457337 CGTACCCGTTGTAGGACTGC 60.457 60.000 0.00 0.00 37.48 4.40
1589 1924 4.215827 AGTCCAATACTATCGGCTTCGTAG 59.784 45.833 0.00 0.00 36.36 3.51
1611 1946 6.875726 TCCATCTATTTCTTGACACTGTGAAG 59.124 38.462 15.86 8.75 0.00 3.02
1620 1955 5.176590 CGCTAAGCTCCATCTATTTCTTGAC 59.823 44.000 0.00 0.00 0.00 3.18
1629 1964 2.384828 TGGAACGCTAAGCTCCATCTA 58.615 47.619 0.00 0.00 0.00 1.98
1670 2005 9.933723 CATGAAAAATTCAATTTTACTCCCTCT 57.066 29.630 8.55 0.00 43.95 3.69
1671 2006 9.710900 ACATGAAAAATTCAATTTTACTCCCTC 57.289 29.630 8.55 2.69 43.95 4.30
1715 2110 3.570550 ACCTGCGAGGAGACAAGATATAC 59.429 47.826 8.91 0.00 37.67 1.47
1716 2111 3.833732 ACCTGCGAGGAGACAAGATATA 58.166 45.455 8.91 0.00 37.67 0.86
1900 2295 3.797546 GCTGCGTCCTGCTCTTGC 61.798 66.667 0.00 0.00 46.63 4.01
1952 2347 4.136796 ACAGCACAGAGTGAAAATTGCTA 58.863 39.130 0.58 0.00 38.24 3.49
2003 2401 2.224843 ACACAGCCAATTGAGATGTCCA 60.225 45.455 7.12 0.00 0.00 4.02
2007 2405 3.079578 ACTGACACAGCCAATTGAGATG 58.920 45.455 7.12 8.70 34.37 2.90
2014 2413 0.892358 CCTGCACTGACACAGCCAAT 60.892 55.000 0.00 0.00 34.37 3.16
2017 2416 0.819259 TTTCCTGCACTGACACAGCC 60.819 55.000 0.00 0.00 34.37 4.85
2052 2451 0.906066 GGTTCCCTCCTGAAGAGTCC 59.094 60.000 0.00 0.00 41.47 3.85
2120 2525 2.303311 GGGTTGTCCTGCTAGTTTCTCT 59.697 50.000 0.00 0.00 0.00 3.10
2156 2561 2.629051 AGGTACAGTTTCCTTATGCGC 58.371 47.619 0.00 0.00 0.00 6.09
2172 2577 2.828877 CTTCCGTTGTGTGTGAAGGTA 58.171 47.619 0.00 0.00 32.49 3.08
2184 2589 1.535860 CCTTGGTGTTTGCTTCCGTTG 60.536 52.381 0.00 0.00 0.00 4.10
2226 2631 0.873054 ATCTATCGCGAGTGTACCCG 59.127 55.000 16.66 0.00 0.00 5.28
2234 2639 5.223225 TGTTGCTATCTATCTATCGCGAG 57.777 43.478 16.66 1.05 0.00 5.03
2315 2728 6.354477 GGGGTCCTCCTCCATTTCTATAAAAA 60.354 42.308 0.00 0.00 35.33 1.94
2316 2729 5.133830 GGGGTCCTCCTCCATTTCTATAAAA 59.866 44.000 0.00 0.00 35.33 1.52
2317 2730 4.663592 GGGGTCCTCCTCCATTTCTATAAA 59.336 45.833 0.00 0.00 35.33 1.40
2318 2731 4.240323 GGGGTCCTCCTCCATTTCTATAA 58.760 47.826 0.00 0.00 35.33 0.98
2319 2732 3.870559 GGGGTCCTCCTCCATTTCTATA 58.129 50.000 0.00 0.00 35.33 1.31
2320 2733 2.707554 GGGGTCCTCCTCCATTTCTAT 58.292 52.381 0.00 0.00 35.33 1.98
2321 2734 2.191981 GGGGTCCTCCTCCATTTCTA 57.808 55.000 0.00 0.00 35.33 2.10
2322 2735 3.029083 GGGGTCCTCCTCCATTTCT 57.971 57.895 0.00 0.00 35.33 2.52
2329 2742 2.365768 GTCCAGGGGGTCCTCCTC 60.366 72.222 7.61 0.00 42.67 3.71
2330 2743 4.400251 CGTCCAGGGGGTCCTCCT 62.400 72.222 3.61 3.61 42.67 3.69
2331 2744 3.698263 ATCGTCCAGGGGGTCCTCC 62.698 68.421 0.00 0.00 42.67 4.30
2332 2745 2.041819 ATCGTCCAGGGGGTCCTC 60.042 66.667 0.00 0.00 42.67 3.71
2333 2746 2.365635 CATCGTCCAGGGGGTCCT 60.366 66.667 0.00 0.00 46.26 3.85
2334 2747 4.176752 GCATCGTCCAGGGGGTCC 62.177 72.222 0.00 0.00 34.93 4.46
2335 2748 2.746375 ATGCATCGTCCAGGGGGTC 61.746 63.158 0.00 0.00 34.93 4.46
2336 2749 2.692368 ATGCATCGTCCAGGGGGT 60.692 61.111 0.00 0.00 34.93 4.95
2337 2750 2.203252 CATGCATCGTCCAGGGGG 60.203 66.667 0.00 0.00 0.00 5.40
2338 2751 2.903855 GCATGCATCGTCCAGGGG 60.904 66.667 14.21 0.00 0.00 4.79
2339 2752 1.512996 GATGCATGCATCGTCCAGGG 61.513 60.000 37.33 0.00 42.55 4.45
2340 2753 1.947013 GATGCATGCATCGTCCAGG 59.053 57.895 37.33 0.00 42.55 4.45
2383 2796 9.595823 TCTTACTATTGTATGACTTTGTAAGGC 57.404 33.333 0.00 0.00 37.36 4.35
2402 2815 7.201767 GCCTAGACGGTGATTTTAGTCTTACTA 60.202 40.741 2.22 0.00 42.99 1.82
2415 2828 3.898123 ACAGATATTGCCTAGACGGTGAT 59.102 43.478 0.00 0.00 34.25 3.06
2431 2844 4.041815 ACTGGATAGGAGTAGCGACAGATA 59.958 45.833 0.00 0.00 0.00 1.98
2459 2875 2.224475 CCCAGACTATCAGCATCCCTTG 60.224 54.545 0.00 0.00 0.00 3.61
2482 2898 4.250464 CTGCGAGGTCTGTTTGGTATTAA 58.750 43.478 0.00 0.00 0.00 1.40
2563 3003 4.338539 GTGCGTCGGACTCGTGGT 62.339 66.667 9.90 0.00 37.69 4.16
2568 3008 1.863662 TTGAGGAGTGCGTCGGACTC 61.864 60.000 31.77 31.77 39.38 3.36
2575 3015 2.671145 TCCTGATTGAGGAGTGCGT 58.329 52.632 0.00 0.00 46.96 5.24
2632 3072 7.196331 GGCAATACAACACTAAAGATGGAATC 58.804 38.462 0.00 0.00 46.04 2.52
2634 3074 5.123186 CGGCAATACAACACTAAAGATGGAA 59.877 40.000 0.00 0.00 0.00 3.53
2690 3131 1.741770 GTCTGACATCGTGGTGGCC 60.742 63.158 2.24 0.00 0.00 5.36
2701 3142 0.035317 GATGGTGGCACTGTCTGACA 59.965 55.000 18.45 10.50 34.41 3.58
2703 3144 0.837691 AGGATGGTGGCACTGTCTGA 60.838 55.000 18.45 0.00 0.00 3.27
2775 3216 0.179234 TTGACAACAGCGGGTCTCAA 59.821 50.000 0.00 0.00 35.11 3.02
2786 3227 1.601903 GAATCTGGCACGTTGACAACA 59.398 47.619 18.09 0.00 33.21 3.33
2845 3286 1.830847 GGGGGCAACGTTTTGGAGT 60.831 57.895 0.00 0.00 32.81 3.85
2856 3297 1.160870 TTCTCTCTCCTGGGGGCAA 59.839 57.895 0.00 0.00 0.00 4.52
2886 3329 1.088340 AGATCGGACGATGACGACGT 61.088 55.000 12.40 0.00 46.58 4.34
3025 3488 2.546789 GACGTGACTTCCGGTGAAAATT 59.453 45.455 0.00 0.00 0.00 1.82
3061 3526 4.379243 CGCTCGGTTCCAGCCAGT 62.379 66.667 7.36 0.00 32.83 4.00
3308 3779 1.000896 GTGGCCCAAGCACCATAGT 60.001 57.895 0.00 0.00 42.56 2.12
3335 3807 2.757124 GGGGCGGTGATCCCATTCT 61.757 63.158 0.06 0.00 45.73 2.40
3401 3874 0.250640 GGATGCTGCGGGATCTCATT 60.251 55.000 24.23 0.00 39.71 2.57
3483 3956 3.618780 CTTGCGCCTCCTTCTGCCT 62.619 63.158 4.18 0.00 0.00 4.75
3593 4066 7.918536 ATATATGTAGGCATCTGAAAAGCAG 57.081 36.000 0.00 0.00 46.31 4.24
3594 4067 8.815912 TCTATATATGTAGGCATCTGAAAAGCA 58.184 33.333 6.65 0.00 36.58 3.91
3595 4068 9.658799 TTCTATATATGTAGGCATCTGAAAAGC 57.341 33.333 6.65 0.00 36.58 3.51
3600 4073 9.314133 ACACTTTCTATATATGTAGGCATCTGA 57.686 33.333 6.65 0.00 36.58 3.27
3601 4074 9.935241 AACACTTTCTATATATGTAGGCATCTG 57.065 33.333 6.65 0.53 36.58 2.90
3602 4075 9.935241 CAACACTTTCTATATATGTAGGCATCT 57.065 33.333 6.65 0.00 36.58 2.90
3603 4076 8.660373 GCAACACTTTCTATATATGTAGGCATC 58.340 37.037 6.65 0.00 36.58 3.91
3604 4077 8.156820 TGCAACACTTTCTATATATGTAGGCAT 58.843 33.333 6.65 0.00 39.03 4.40
3605 4078 7.505258 TGCAACACTTTCTATATATGTAGGCA 58.495 34.615 6.65 3.43 33.79 4.75
3606 4079 7.962964 TGCAACACTTTCTATATATGTAGGC 57.037 36.000 6.65 1.13 0.00 3.93
3642 4115 8.129211 ACATAAAAGCAGTGTTCAGTAAACTTC 58.871 33.333 0.00 0.00 38.76 3.01
3755 4308 3.490348 CCAGGTATGCCCAAGGAATTAG 58.510 50.000 0.00 0.00 33.62 1.73
3847 4400 2.673775 TGGAAACCTGCATCTCCAAA 57.326 45.000 4.27 0.00 35.02 3.28
3898 4451 9.778993 GTCTCGTAGTTACATCATGTTTTACTA 57.221 33.333 0.00 0.00 0.00 1.82
3905 4458 6.510879 TTCAGTCTCGTAGTTACATCATGT 57.489 37.500 0.00 0.00 0.00 3.21
3979 4532 0.933097 CGTGATCATACTGGCTGCAC 59.067 55.000 0.00 0.00 0.00 4.57
3998 4551 6.212888 AGACTTATGGCAAATGGTGAATTC 57.787 37.500 0.00 0.00 0.00 2.17
4053 4629 1.135689 GTGTTGTGAACCGATGGATGC 60.136 52.381 0.00 0.00 0.00 3.91
4086 4662 3.303461 CCGCGAACTCATGTTGTTGTAAA 60.303 43.478 8.23 0.00 36.39 2.01
4114 4690 1.910580 GATTTCAGGACTCGGGGGCA 61.911 60.000 0.00 0.00 0.00 5.36
4116 4692 0.618458 TTGATTTCAGGACTCGGGGG 59.382 55.000 0.00 0.00 0.00 5.40
4117 4693 2.084546 GTTTGATTTCAGGACTCGGGG 58.915 52.381 0.00 0.00 0.00 5.73
4186 4763 9.913310 TCAATAATAATGGTCACAATCTAACCA 57.087 29.630 0.00 0.00 46.51 3.67
4191 4768 9.071276 GTGGATCAATAATAATGGTCACAATCT 57.929 33.333 0.00 0.00 29.21 2.40
4344 4929 1.155424 TGGTCTGTGTTCGTTTCGGC 61.155 55.000 0.00 0.00 0.00 5.54
4345 4930 1.004292 GTTGGTCTGTGTTCGTTTCGG 60.004 52.381 0.00 0.00 0.00 4.30
4410 4995 4.085733 ACGGATCTATCAGAGAGGATTGG 58.914 47.826 0.00 0.00 37.70 3.16
4414 4999 4.715534 AAGACGGATCTATCAGAGAGGA 57.284 45.455 0.00 0.00 37.70 3.71
4416 5001 5.530915 ACAGAAAGACGGATCTATCAGAGAG 59.469 44.000 0.00 0.00 37.70 3.20
4417 5002 5.298026 CACAGAAAGACGGATCTATCAGAGA 59.702 44.000 0.00 0.00 39.01 3.10
4427 5012 0.976641 TGAGGCACAGAAAGACGGAT 59.023 50.000 0.00 0.00 0.00 4.18
4485 5070 1.334869 CGCAGATTATTCCAACCTGGC 59.665 52.381 0.00 0.00 37.47 4.85
4486 5071 1.334869 GCGCAGATTATTCCAACCTGG 59.665 52.381 0.30 0.00 39.43 4.45
4487 5072 1.003545 CGCGCAGATTATTCCAACCTG 60.004 52.381 8.75 0.00 0.00 4.00
4488 5073 1.134521 TCGCGCAGATTATTCCAACCT 60.135 47.619 8.75 0.00 0.00 3.50
4489 5074 1.295792 TCGCGCAGATTATTCCAACC 58.704 50.000 8.75 0.00 0.00 3.77
4506 5091 2.658802 CTGAAGACACGACAACTGATCG 59.341 50.000 0.00 0.00 45.17 3.69
4507 5092 2.989840 CCTGAAGACACGACAACTGATC 59.010 50.000 0.00 0.00 0.00 2.92
4508 5093 2.365617 ACCTGAAGACACGACAACTGAT 59.634 45.455 0.00 0.00 0.00 2.90
4509 5094 1.754803 ACCTGAAGACACGACAACTGA 59.245 47.619 0.00 0.00 0.00 3.41
4510 5095 2.225068 ACCTGAAGACACGACAACTG 57.775 50.000 0.00 0.00 0.00 3.16
4511 5096 2.093658 ACAACCTGAAGACACGACAACT 60.094 45.455 0.00 0.00 0.00 3.16
4512 5097 2.277084 ACAACCTGAAGACACGACAAC 58.723 47.619 0.00 0.00 0.00 3.32
4513 5098 2.684001 ACAACCTGAAGACACGACAA 57.316 45.000 0.00 0.00 0.00 3.18
4514 5099 3.649073 CATACAACCTGAAGACACGACA 58.351 45.455 0.00 0.00 0.00 4.35
4515 5100 2.412089 GCATACAACCTGAAGACACGAC 59.588 50.000 0.00 0.00 0.00 4.34
4516 5101 2.299013 AGCATACAACCTGAAGACACGA 59.701 45.455 0.00 0.00 0.00 4.35
4517 5102 2.668457 GAGCATACAACCTGAAGACACG 59.332 50.000 0.00 0.00 0.00 4.49
4518 5103 3.003480 GGAGCATACAACCTGAAGACAC 58.997 50.000 0.00 0.00 0.00 3.67
4533 5118 0.674895 GCGACAGTTTGAGGGAGCAT 60.675 55.000 0.00 0.00 0.00 3.79
4561 5146 1.916000 GTCCTATTTCCGTGAACGTCG 59.084 52.381 1.75 0.00 37.74 5.12
4562 5147 1.916000 CGTCCTATTTCCGTGAACGTC 59.084 52.381 1.75 0.00 37.74 4.34
4563 5148 1.270550 ACGTCCTATTTCCGTGAACGT 59.729 47.619 1.75 0.00 37.74 3.99
4564 5149 1.986698 ACGTCCTATTTCCGTGAACG 58.013 50.000 0.00 0.00 39.44 3.95
4570 5155 1.060122 GCGTTTCACGTCCTATTTCCG 59.940 52.381 0.00 0.00 44.73 4.30
4604 5189 3.701040 GGTTGATTGCAAGGATGTGGTAT 59.299 43.478 4.94 0.00 34.01 2.73
4606 5191 1.895131 GGTTGATTGCAAGGATGTGGT 59.105 47.619 4.94 0.00 34.01 4.16
4623 5208 2.445155 GCCACTTCCATGGGGGTT 59.555 61.111 13.02 0.00 40.43 4.11
4712 5297 3.991773 CGAATTCCAAGACACTCCGTTTA 59.008 43.478 0.00 0.00 0.00 2.01
4731 5316 1.531739 GGTTGCATTTCCCCTGCGAA 61.532 55.000 0.00 0.00 42.62 4.70
4736 5321 1.560505 GATGTGGTTGCATTTCCCCT 58.439 50.000 0.00 0.00 0.00 4.79
4737 5322 0.536724 GGATGTGGTTGCATTTCCCC 59.463 55.000 0.00 0.00 0.00 4.81
4740 5325 6.273071 GGTTATTAGGATGTGGTTGCATTTC 58.727 40.000 0.00 0.00 0.00 2.17
4748 5333 3.244112 GCTAGCGGTTATTAGGATGTGGT 60.244 47.826 0.00 0.00 0.00 4.16
4751 5336 4.891992 ATGCTAGCGGTTATTAGGATGT 57.108 40.909 10.77 0.00 0.00 3.06
4752 5337 4.142816 GCAATGCTAGCGGTTATTAGGATG 60.143 45.833 10.77 0.00 29.81 3.51
4753 5338 4.003648 GCAATGCTAGCGGTTATTAGGAT 58.996 43.478 10.77 0.00 30.43 3.24
4754 5339 3.399330 GCAATGCTAGCGGTTATTAGGA 58.601 45.455 10.77 0.00 0.00 2.94
4755 5340 2.484264 GGCAATGCTAGCGGTTATTAGG 59.516 50.000 10.77 0.00 0.00 2.69
4756 5341 2.157668 CGGCAATGCTAGCGGTTATTAG 59.842 50.000 10.77 1.38 0.00 1.73
4757 5342 2.139917 CGGCAATGCTAGCGGTTATTA 58.860 47.619 10.77 0.00 0.00 0.98
4758 5343 0.944386 CGGCAATGCTAGCGGTTATT 59.056 50.000 10.77 0.89 0.00 1.40
4759 5344 1.507141 GCGGCAATGCTAGCGGTTAT 61.507 55.000 10.77 0.00 35.11 1.89
4760 5345 2.177580 GCGGCAATGCTAGCGGTTA 61.178 57.895 10.77 0.00 35.11 2.85
4761 5346 3.508840 GCGGCAATGCTAGCGGTT 61.509 61.111 10.77 4.73 35.11 4.44
4762 5347 4.776322 TGCGGCAATGCTAGCGGT 62.776 61.111 10.77 0.00 35.72 5.68
4763 5348 3.245948 GATGCGGCAATGCTAGCGG 62.246 63.158 6.82 3.25 35.72 5.52
4764 5349 2.250485 GATGCGGCAATGCTAGCG 59.750 61.111 6.82 9.32 35.72 4.26
4765 5350 1.895707 AGGATGCGGCAATGCTAGC 60.896 57.895 6.82 8.10 35.36 3.42
4766 5351 1.947013 CAGGATGCGGCAATGCTAG 59.053 57.895 6.82 0.68 35.36 3.42
4767 5352 4.146058 CAGGATGCGGCAATGCTA 57.854 55.556 6.82 0.00 35.36 3.49
4778 5363 0.169672 CTTTGACGCCTTGCAGGATG 59.830 55.000 0.00 0.00 37.67 3.51
4779 5364 0.962356 CCTTTGACGCCTTGCAGGAT 60.962 55.000 0.00 0.00 37.67 3.24
4780 5365 1.600636 CCTTTGACGCCTTGCAGGA 60.601 57.895 0.00 0.00 37.67 3.86
4781 5366 2.629656 CCCTTTGACGCCTTGCAGG 61.630 63.158 0.00 0.00 38.80 4.85
4782 5367 2.629656 CCCCTTTGACGCCTTGCAG 61.630 63.158 0.00 0.00 0.00 4.41
4783 5368 2.597217 CCCCTTTGACGCCTTGCA 60.597 61.111 0.00 0.00 0.00 4.08
4784 5369 3.373565 CCCCCTTTGACGCCTTGC 61.374 66.667 0.00 0.00 0.00 4.01
4799 5384 3.207547 GAAGCCACGCACAAACCCC 62.208 63.158 0.00 0.00 0.00 4.95
4800 5385 2.335011 GAAGCCACGCACAAACCC 59.665 61.111 0.00 0.00 0.00 4.11
4801 5386 2.335011 GGAAGCCACGCACAAACC 59.665 61.111 0.00 0.00 0.00 3.27
4802 5387 1.299089 GTGGAAGCCACGCACAAAC 60.299 57.895 0.22 0.00 44.95 2.93
4803 5388 3.115556 GTGGAAGCCACGCACAAA 58.884 55.556 0.22 0.00 44.95 2.83
4811 5396 1.543871 GGTCGGTTAAAGTGGAAGCCA 60.544 52.381 0.00 0.00 0.00 4.75
4812 5397 1.162698 GGTCGGTTAAAGTGGAAGCC 58.837 55.000 0.00 0.00 0.00 4.35
4813 5398 1.804748 CTGGTCGGTTAAAGTGGAAGC 59.195 52.381 0.00 0.00 0.00 3.86
4814 5399 1.804748 GCTGGTCGGTTAAAGTGGAAG 59.195 52.381 0.00 0.00 0.00 3.46
4815 5400 1.543871 GGCTGGTCGGTTAAAGTGGAA 60.544 52.381 0.00 0.00 0.00 3.53
4816 5401 0.035739 GGCTGGTCGGTTAAAGTGGA 59.964 55.000 0.00 0.00 0.00 4.02
4817 5402 1.296056 CGGCTGGTCGGTTAAAGTGG 61.296 60.000 0.00 0.00 0.00 4.00
4818 5403 1.296056 CCGGCTGGTCGGTTAAAGTG 61.296 60.000 2.29 0.00 44.60 3.16
4819 5404 1.004200 CCGGCTGGTCGGTTAAAGT 60.004 57.895 2.29 0.00 44.60 2.66
4820 5405 3.884900 CCGGCTGGTCGGTTAAAG 58.115 61.111 2.29 0.00 44.60 1.85
4850 5435 1.449246 GGTAGTGGAGCTGCAGCAG 60.449 63.158 38.24 18.93 45.16 4.24
4851 5436 2.176314 CTGGTAGTGGAGCTGCAGCA 62.176 60.000 38.24 17.55 45.16 4.41
4852 5437 1.449246 CTGGTAGTGGAGCTGCAGC 60.449 63.158 31.53 31.53 42.49 5.25
4853 5438 0.610174 TTCTGGTAGTGGAGCTGCAG 59.390 55.000 8.73 10.11 0.00 4.41
4854 5439 1.279496 ATTCTGGTAGTGGAGCTGCA 58.721 50.000 2.72 2.72 0.00 4.41
4855 5440 3.543680 TTATTCTGGTAGTGGAGCTGC 57.456 47.619 0.00 0.00 0.00 5.25
4856 5441 5.525378 GTCATTTATTCTGGTAGTGGAGCTG 59.475 44.000 0.00 0.00 0.00 4.24
4857 5442 5.675538 GTCATTTATTCTGGTAGTGGAGCT 58.324 41.667 0.00 0.00 0.00 4.09
4858 5443 4.508124 CGTCATTTATTCTGGTAGTGGAGC 59.492 45.833 0.00 0.00 0.00 4.70
4859 5444 5.661458 ACGTCATTTATTCTGGTAGTGGAG 58.339 41.667 0.00 0.00 0.00 3.86
4860 5445 5.670792 ACGTCATTTATTCTGGTAGTGGA 57.329 39.130 0.00 0.00 0.00 4.02
4861 5446 5.447279 GCAACGTCATTTATTCTGGTAGTGG 60.447 44.000 0.00 0.00 0.00 4.00
4862 5447 5.447279 GGCAACGTCATTTATTCTGGTAGTG 60.447 44.000 0.00 0.00 0.00 2.74
4863 5448 4.634443 GGCAACGTCATTTATTCTGGTAGT 59.366 41.667 0.00 0.00 0.00 2.73
4864 5449 5.156804 GGCAACGTCATTTATTCTGGTAG 57.843 43.478 0.00 0.00 0.00 3.18
4881 5466 2.282701 TAGATAACACCGTCGGCAAC 57.717 50.000 12.28 0.00 0.00 4.17
4882 5467 2.816689 CATAGATAACACCGTCGGCAA 58.183 47.619 12.28 0.00 0.00 4.52
4883 5468 1.537348 GCATAGATAACACCGTCGGCA 60.537 52.381 12.28 0.00 0.00 5.69
4884 5469 1.137513 GCATAGATAACACCGTCGGC 58.862 55.000 12.28 0.00 0.00 5.54
4885 5470 1.779569 GGCATAGATAACACCGTCGG 58.220 55.000 10.48 10.48 0.00 4.79
4886 5471 1.002142 TCGGCATAGATAACACCGTCG 60.002 52.381 0.00 0.00 44.17 5.12
4887 5472 2.391879 GTCGGCATAGATAACACCGTC 58.608 52.381 0.00 0.00 44.17 4.79
4888 5473 1.268896 CGTCGGCATAGATAACACCGT 60.269 52.381 0.00 0.00 44.17 4.83
4889 5474 1.405461 CGTCGGCATAGATAACACCG 58.595 55.000 0.00 0.00 45.15 4.94
4890 5475 1.779569 CCGTCGGCATAGATAACACC 58.220 55.000 0.00 0.00 0.00 4.16
4910 5495 2.343758 CATCTATGCCGACGGGGG 59.656 66.667 17.22 0.00 35.78 5.40
4911 5496 2.159819 CTCCATCTATGCCGACGGGG 62.160 65.000 17.22 6.38 39.58 5.73
4912 5497 1.179174 TCTCCATCTATGCCGACGGG 61.179 60.000 17.22 0.00 0.00 5.28
4913 5498 0.891373 ATCTCCATCTATGCCGACGG 59.109 55.000 10.29 10.29 0.00 4.79
4914 5499 2.476352 CGTATCTCCATCTATGCCGACG 60.476 54.545 0.00 0.00 0.00 5.12
4915 5500 2.732597 GCGTATCTCCATCTATGCCGAC 60.733 54.545 0.00 0.00 0.00 4.79
4916 5501 1.472878 GCGTATCTCCATCTATGCCGA 59.527 52.381 0.00 0.00 0.00 5.54
4917 5502 1.469940 GGCGTATCTCCATCTATGCCG 60.470 57.143 0.00 0.00 39.52 5.69
4918 5503 1.469940 CGGCGTATCTCCATCTATGCC 60.470 57.143 0.00 3.26 43.59 4.40
4919 5504 1.472878 TCGGCGTATCTCCATCTATGC 59.527 52.381 6.85 0.00 0.00 3.14
4920 5505 2.476352 CGTCGGCGTATCTCCATCTATG 60.476 54.545 6.85 0.00 0.00 2.23
4921 5506 1.738350 CGTCGGCGTATCTCCATCTAT 59.262 52.381 6.85 0.00 0.00 1.98
4922 5507 1.154197 CGTCGGCGTATCTCCATCTA 58.846 55.000 6.85 0.00 0.00 1.98
4923 5508 1.516365 CCGTCGGCGTATCTCCATCT 61.516 60.000 9.28 0.00 36.15 2.90
4924 5509 1.081376 CCGTCGGCGTATCTCCATC 60.081 63.158 9.28 0.00 36.15 3.51
4925 5510 3.039988 CCGTCGGCGTATCTCCAT 58.960 61.111 9.28 0.00 36.15 3.41
4926 5511 3.896133 GCCGTCGGCGTATCTCCA 61.896 66.667 22.50 0.00 39.62 3.86
4936 5521 4.367023 TGTTTCCTCGGCCGTCGG 62.367 66.667 27.15 25.33 39.77 4.79
4937 5522 3.110178 GTGTTTCCTCGGCCGTCG 61.110 66.667 27.15 17.27 40.90 5.12
4938 5523 2.741211 GGTGTTTCCTCGGCCGTC 60.741 66.667 27.15 10.22 0.00 4.79
4939 5524 4.675029 CGGTGTTTCCTCGGCCGT 62.675 66.667 27.15 0.00 37.87 5.68
4940 5525 3.285523 TACGGTGTTTCCTCGGCCG 62.286 63.158 22.12 22.12 46.83 6.13
4941 5526 1.447314 CTACGGTGTTTCCTCGGCC 60.447 63.158 0.00 0.00 0.00 6.13
4942 5527 1.447314 CCTACGGTGTTTCCTCGGC 60.447 63.158 0.00 0.00 0.00 5.54
4943 5528 1.447314 GCCTACGGTGTTTCCTCGG 60.447 63.158 0.00 0.00 0.00 4.63
4944 5529 1.804326 CGCCTACGGTGTTTCCTCG 60.804 63.158 0.00 0.00 34.97 4.63
4945 5530 0.527565 TACGCCTACGGTGTTTCCTC 59.472 55.000 4.25 0.00 44.78 3.71
4946 5531 0.244721 GTACGCCTACGGTGTTTCCT 59.755 55.000 4.25 0.00 44.78 3.36
4947 5532 0.038343 TGTACGCCTACGGTGTTTCC 60.038 55.000 4.25 0.00 44.78 3.13
4948 5533 1.068333 TCTGTACGCCTACGGTGTTTC 60.068 52.381 4.25 0.43 44.78 2.78
4949 5534 0.961019 TCTGTACGCCTACGGTGTTT 59.039 50.000 4.25 0.00 44.78 2.83
4950 5535 0.961019 TTCTGTACGCCTACGGTGTT 59.039 50.000 4.25 0.00 44.78 3.32
4952 5537 0.801067 GCTTCTGTACGCCTACGGTG 60.801 60.000 2.22 0.00 46.04 4.94
4953 5538 1.509923 GCTTCTGTACGCCTACGGT 59.490 57.895 2.22 0.00 46.04 4.83
4954 5539 1.226888 GGCTTCTGTACGCCTACGG 60.227 63.158 2.55 0.00 46.04 4.02
4955 5540 1.585521 CGGCTTCTGTACGCCTACG 60.586 63.158 7.74 0.00 44.11 3.51
4956 5541 0.525029 GACGGCTTCTGTACGCCTAC 60.525 60.000 7.74 0.00 44.11 3.18
4957 5542 1.805254 GACGGCTTCTGTACGCCTA 59.195 57.895 7.74 0.00 44.11 3.93
4958 5543 2.572284 GACGGCTTCTGTACGCCT 59.428 61.111 7.74 0.00 44.11 5.52
4959 5544 2.879462 CGACGGCTTCTGTACGCC 60.879 66.667 0.00 0.00 42.86 5.68
4960 5545 2.879462 CCGACGGCTTCTGTACGC 60.879 66.667 0.00 0.00 0.00 4.42
4961 5546 2.879462 GCCGACGGCTTCTGTACG 60.879 66.667 31.30 0.00 46.69 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.