Multiple sequence alignment - TraesCS5A01G256900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G256900 chr5A 100.000 2435 0 0 1 2435 472341167 472343601 0.000000e+00 4497
1 TraesCS5A01G256900 chr5A 91.463 164 14 0 324 487 26961005 26960842 2.440000e-55 226
2 TraesCS5A01G256900 chr5B 85.876 1947 160 64 532 2432 439227120 439228997 0.000000e+00 1965
3 TraesCS5A01G256900 chr5D 89.636 1100 40 22 546 1636 369869725 369870759 0.000000e+00 1332
4 TraesCS5A01G256900 chr5D 83.016 577 71 12 1856 2432 369870767 369871316 4.680000e-137 497
5 TraesCS5A01G256900 chr5D 92.032 251 18 2 58 308 522167491 522167243 3.850000e-93 351
6 TraesCS5A01G256900 chr5D 81.527 406 68 5 1828 2228 505371561 505371964 6.490000e-86 327
7 TraesCS5A01G256900 chr5D 86.268 284 36 3 1 281 531478394 531478111 3.040000e-79 305
8 TraesCS5A01G256900 chr5D 90.230 174 16 1 316 488 213217000 213216827 2.440000e-55 226
9 TraesCS5A01G256900 chr1D 90.000 310 28 3 1 308 192594596 192594904 4.880000e-107 398
10 TraesCS5A01G256900 chr1D 91.071 168 13 1 324 491 459839381 459839216 2.440000e-55 226
11 TraesCS5A01G256900 chr1A 88.449 303 31 4 1 301 238699567 238699867 1.780000e-96 363
12 TraesCS5A01G256900 chr1A 89.655 174 17 1 319 492 295312713 295312885 1.130000e-53 220
13 TraesCS5A01G256900 chr3A 87.013 308 38 1 1 308 715510050 715510355 1.790000e-91 346
14 TraesCS5A01G256900 chr3A 87.013 308 38 1 1 308 715540772 715540467 1.790000e-91 346
15 TraesCS5A01G256900 chr3A 90.533 169 15 1 324 492 722287333 722287166 3.150000e-54 222
16 TraesCS5A01G256900 chr3A 75.329 304 60 15 2 300 524257908 524257615 5.460000e-27 132
17 TraesCS5A01G256900 chr6B 86.817 311 37 4 1 308 279693569 279693878 6.450000e-91 344
18 TraesCS5A01G256900 chr6A 82.576 396 61 5 1827 2217 199805848 199806240 2.320000e-90 342
19 TraesCS5A01G256900 chr6A 81.527 406 70 3 1827 2228 54372807 54372403 1.800000e-86 329
20 TraesCS5A01G256900 chr6A 80.941 404 68 5 1827 2223 540151756 540151355 6.540000e-81 311
21 TraesCS5A01G256900 chr6A 92.121 165 13 0 324 488 458217711 458217875 1.460000e-57 233
22 TraesCS5A01G256900 chr3B 81.454 399 59 12 1825 2215 775363789 775364180 1.820000e-81 313
23 TraesCS5A01G256900 chr3B 81.203 399 61 10 1828 2218 582468935 582468543 2.350000e-80 309
24 TraesCS5A01G256900 chr7D 81.013 395 69 4 1829 2218 406806050 406805657 2.350000e-80 309
25 TraesCS5A01G256900 chr4D 80.392 408 72 5 1811 2215 6226613 6227015 1.090000e-78 303
26 TraesCS5A01G256900 chr4D 91.463 164 14 0 324 487 62120634 62120471 2.440000e-55 226
27 TraesCS5A01G256900 chr7B 92.262 168 12 1 324 491 492490664 492490498 1.130000e-58 237
28 TraesCS5A01G256900 chr3D 90.533 169 16 0 324 492 145972546 145972714 8.760000e-55 224
29 TraesCS5A01G256900 chr4A 83.212 137 18 5 154 288 275564047 275564180 1.180000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G256900 chr5A 472341167 472343601 2434 False 4497.0 4497 100.000 1 2435 1 chr5A.!!$F1 2434
1 TraesCS5A01G256900 chr5B 439227120 439228997 1877 False 1965.0 1965 85.876 532 2432 1 chr5B.!!$F1 1900
2 TraesCS5A01G256900 chr5D 369869725 369871316 1591 False 914.5 1332 86.326 546 2432 2 chr5D.!!$F2 1886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 537 0.033504 TCCTGCTTGGACGACTGAAC 59.966 55.0 0.0 0.0 40.56 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 2441 0.037232 GCAGCTAAAGTCCACGTCCT 60.037 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.694231 AGGCAATGAAAAATCAAAAAGGC 57.306 34.783 0.00 0.00 0.00 4.35
25 26 5.131784 AGGCAATGAAAAATCAAAAAGGCA 58.868 33.333 0.00 0.00 0.00 4.75
26 27 5.008911 AGGCAATGAAAAATCAAAAAGGCAC 59.991 36.000 0.00 0.00 0.00 5.01
27 28 4.905295 GCAATGAAAAATCAAAAAGGCACG 59.095 37.500 0.00 0.00 0.00 5.34
28 29 5.277250 GCAATGAAAAATCAAAAAGGCACGA 60.277 36.000 0.00 0.00 0.00 4.35
29 30 6.566376 GCAATGAAAAATCAAAAAGGCACGAT 60.566 34.615 0.00 0.00 0.00 3.73
30 31 7.354257 CAATGAAAAATCAAAAAGGCACGATT 58.646 30.769 0.00 0.00 0.00 3.34
31 32 6.523676 TGAAAAATCAAAAAGGCACGATTC 57.476 33.333 0.00 0.00 0.00 2.52
32 33 5.174761 TGAAAAATCAAAAAGGCACGATTCG 59.825 36.000 4.14 4.14 0.00 3.34
33 34 2.919666 ATCAAAAAGGCACGATTCGG 57.080 45.000 11.29 0.73 0.00 4.30
34 35 1.885560 TCAAAAAGGCACGATTCGGA 58.114 45.000 11.29 0.00 0.00 4.55
35 36 2.222886 TCAAAAAGGCACGATTCGGAA 58.777 42.857 11.29 0.00 0.00 4.30
36 37 2.817258 TCAAAAAGGCACGATTCGGAAT 59.183 40.909 11.29 2.19 0.00 3.01
37 38 2.916716 CAAAAAGGCACGATTCGGAATG 59.083 45.455 8.18 3.58 0.00 2.67
38 39 1.821216 AAAGGCACGATTCGGAATGT 58.179 45.000 8.18 4.19 0.00 2.71
39 40 1.086696 AAGGCACGATTCGGAATGTG 58.913 50.000 19.78 19.78 35.48 3.21
40 41 0.249120 AGGCACGATTCGGAATGTGA 59.751 50.000 24.48 0.00 34.29 3.58
41 42 0.652592 GGCACGATTCGGAATGTGAG 59.347 55.000 24.48 12.15 34.29 3.51
42 43 1.359848 GCACGATTCGGAATGTGAGT 58.640 50.000 24.48 11.94 34.29 3.41
43 44 1.061131 GCACGATTCGGAATGTGAGTG 59.939 52.381 24.48 19.84 34.29 3.51
44 45 2.606108 CACGATTCGGAATGTGAGTGA 58.394 47.619 19.56 0.00 34.29 3.41
45 46 2.345641 CACGATTCGGAATGTGAGTGAC 59.654 50.000 19.56 1.29 34.29 3.67
46 47 2.231478 ACGATTCGGAATGTGAGTGACT 59.769 45.455 8.18 0.00 0.00 3.41
47 48 3.254060 CGATTCGGAATGTGAGTGACTT 58.746 45.455 8.18 0.00 0.00 3.01
48 49 3.679980 CGATTCGGAATGTGAGTGACTTT 59.320 43.478 8.18 0.00 0.00 2.66
49 50 4.862574 CGATTCGGAATGTGAGTGACTTTA 59.137 41.667 8.18 0.00 0.00 1.85
50 51 5.220228 CGATTCGGAATGTGAGTGACTTTAC 60.220 44.000 8.18 0.00 0.00 2.01
51 52 4.594123 TCGGAATGTGAGTGACTTTACA 57.406 40.909 6.18 6.18 0.00 2.41
52 53 5.147330 TCGGAATGTGAGTGACTTTACAT 57.853 39.130 9.65 9.65 35.43 2.29
53 54 5.547465 TCGGAATGTGAGTGACTTTACATT 58.453 37.500 21.23 21.23 44.00 2.71
54 55 6.693466 TCGGAATGTGAGTGACTTTACATTA 58.307 36.000 21.16 9.72 42.09 1.90
55 56 7.327975 TCGGAATGTGAGTGACTTTACATTAT 58.672 34.615 21.16 7.93 42.09 1.28
56 57 7.822334 TCGGAATGTGAGTGACTTTACATTATT 59.178 33.333 21.16 7.97 42.09 1.40
57 58 8.116753 CGGAATGTGAGTGACTTTACATTATTC 58.883 37.037 21.16 13.85 42.09 1.75
58 59 9.167311 GGAATGTGAGTGACTTTACATTATTCT 57.833 33.333 21.16 6.85 42.09 2.40
62 63 9.554395 TGTGAGTGACTTTACATTATTCTTTCA 57.446 29.630 0.38 0.00 0.00 2.69
63 64 9.813080 GTGAGTGACTTTACATTATTCTTTCAC 57.187 33.333 0.00 0.00 0.00 3.18
64 65 9.554395 TGAGTGACTTTACATTATTCTTTCACA 57.446 29.630 0.00 0.00 34.57 3.58
74 75 8.571461 ACATTATTCTTTCACATGATGTCACT 57.429 30.769 0.00 0.00 26.33 3.41
75 76 9.017509 ACATTATTCTTTCACATGATGTCACTT 57.982 29.630 0.00 0.00 26.33 3.16
76 77 9.499585 CATTATTCTTTCACATGATGTCACTTC 57.500 33.333 0.00 0.00 0.00 3.01
77 78 8.853077 TTATTCTTTCACATGATGTCACTTCT 57.147 30.769 0.00 0.00 0.00 2.85
78 79 9.942850 TTATTCTTTCACATGATGTCACTTCTA 57.057 29.630 0.00 0.00 0.00 2.10
80 81 8.853077 TTCTTTCACATGATGTCACTTCTATT 57.147 30.769 0.00 0.00 0.00 1.73
81 82 8.853077 TCTTTCACATGATGTCACTTCTATTT 57.147 30.769 0.00 0.00 0.00 1.40
82 83 9.288576 TCTTTCACATGATGTCACTTCTATTTT 57.711 29.630 0.00 0.00 0.00 1.82
90 91 9.846248 ATGATGTCACTTCTATTTTAAACTTGC 57.154 29.630 0.00 0.00 0.00 4.01
91 92 8.296713 TGATGTCACTTCTATTTTAAACTTGCC 58.703 33.333 0.00 0.00 0.00 4.52
92 93 7.575414 TGTCACTTCTATTTTAAACTTGCCA 57.425 32.000 0.00 0.00 0.00 4.92
93 94 8.001881 TGTCACTTCTATTTTAAACTTGCCAA 57.998 30.769 0.00 0.00 0.00 4.52
94 95 7.918562 TGTCACTTCTATTTTAAACTTGCCAAC 59.081 33.333 0.00 0.00 0.00 3.77
95 96 7.381408 GTCACTTCTATTTTAAACTTGCCAACC 59.619 37.037 0.00 0.00 0.00 3.77
96 97 7.286775 TCACTTCTATTTTAAACTTGCCAACCT 59.713 33.333 0.00 0.00 0.00 3.50
97 98 8.573035 CACTTCTATTTTAAACTTGCCAACCTA 58.427 33.333 0.00 0.00 0.00 3.08
98 99 9.138596 ACTTCTATTTTAAACTTGCCAACCTAA 57.861 29.630 0.00 0.00 0.00 2.69
99 100 9.406828 CTTCTATTTTAAACTTGCCAACCTAAC 57.593 33.333 0.00 0.00 0.00 2.34
100 101 8.700439 TCTATTTTAAACTTGCCAACCTAACT 57.300 30.769 0.00 0.00 0.00 2.24
101 102 9.138596 TCTATTTTAAACTTGCCAACCTAACTT 57.861 29.630 0.00 0.00 0.00 2.66
102 103 9.191995 CTATTTTAAACTTGCCAACCTAACTTG 57.808 33.333 0.00 0.00 0.00 3.16
103 104 6.532988 TTTAAACTTGCCAACCTAACTTGT 57.467 33.333 0.00 0.00 0.00 3.16
104 105 6.532988 TTAAACTTGCCAACCTAACTTGTT 57.467 33.333 0.00 0.00 0.00 2.83
105 106 7.642082 TTAAACTTGCCAACCTAACTTGTTA 57.358 32.000 0.00 0.00 0.00 2.41
106 107 6.724893 AAACTTGCCAACCTAACTTGTTAT 57.275 33.333 0.00 0.00 0.00 1.89
107 108 6.724893 AACTTGCCAACCTAACTTGTTATT 57.275 33.333 0.00 0.00 0.00 1.40
108 109 6.724893 ACTTGCCAACCTAACTTGTTATTT 57.275 33.333 0.00 0.00 0.00 1.40
109 110 7.119709 ACTTGCCAACCTAACTTGTTATTTT 57.880 32.000 0.00 0.00 0.00 1.82
110 111 7.207383 ACTTGCCAACCTAACTTGTTATTTTC 58.793 34.615 0.00 0.00 0.00 2.29
111 112 6.969993 TGCCAACCTAACTTGTTATTTTCT 57.030 33.333 0.00 0.00 0.00 2.52
112 113 7.354751 TGCCAACCTAACTTGTTATTTTCTT 57.645 32.000 0.00 0.00 0.00 2.52
113 114 7.430441 TGCCAACCTAACTTGTTATTTTCTTC 58.570 34.615 0.00 0.00 0.00 2.87
114 115 7.286775 TGCCAACCTAACTTGTTATTTTCTTCT 59.713 33.333 0.00 0.00 0.00 2.85
115 116 8.789762 GCCAACCTAACTTGTTATTTTCTTCTA 58.210 33.333 0.00 0.00 0.00 2.10
141 142 8.746052 TGTTTTTAGAAAGATGAGAAGTTGGA 57.254 30.769 0.00 0.00 0.00 3.53
142 143 9.354673 TGTTTTTAGAAAGATGAGAAGTTGGAT 57.645 29.630 0.00 0.00 0.00 3.41
149 150 9.917887 AGAAAGATGAGAAGTTGGATATGAAAT 57.082 29.630 0.00 0.00 0.00 2.17
213 214 8.889849 AACGAGTGATTTTATAATTTCAACCG 57.110 30.769 0.00 13.11 0.00 4.44
214 215 8.259049 ACGAGTGATTTTATAATTTCAACCGA 57.741 30.769 17.44 0.00 0.00 4.69
215 216 8.889717 ACGAGTGATTTTATAATTTCAACCGAT 58.110 29.630 17.44 7.62 0.00 4.18
216 217 9.716507 CGAGTGATTTTATAATTTCAACCGATT 57.283 29.630 11.10 0.00 0.00 3.34
218 219 9.801873 AGTGATTTTATAATTTCAACCGATTGG 57.198 29.630 0.00 0.00 42.84 3.16
232 233 4.732285 CCGATTGGTATGTTATGCACTC 57.268 45.455 0.00 0.00 0.00 3.51
233 234 4.380531 CCGATTGGTATGTTATGCACTCT 58.619 43.478 0.00 0.00 0.00 3.24
234 235 4.816385 CCGATTGGTATGTTATGCACTCTT 59.184 41.667 0.00 0.00 0.00 2.85
235 236 5.050091 CCGATTGGTATGTTATGCACTCTTC 60.050 44.000 0.00 0.00 0.00 2.87
236 237 5.523552 CGATTGGTATGTTATGCACTCTTCA 59.476 40.000 0.00 0.00 0.00 3.02
237 238 6.037062 CGATTGGTATGTTATGCACTCTTCAA 59.963 38.462 0.00 0.00 0.00 2.69
238 239 7.254898 CGATTGGTATGTTATGCACTCTTCAAT 60.255 37.037 0.00 0.00 0.00 2.57
239 240 7.701539 TTGGTATGTTATGCACTCTTCAATT 57.298 32.000 0.00 0.00 0.00 2.32
240 241 7.701539 TGGTATGTTATGCACTCTTCAATTT 57.298 32.000 0.00 0.00 0.00 1.82
241 242 8.121305 TGGTATGTTATGCACTCTTCAATTTT 57.879 30.769 0.00 0.00 0.00 1.82
242 243 9.237187 TGGTATGTTATGCACTCTTCAATTTTA 57.763 29.630 0.00 0.00 0.00 1.52
252 253 9.862371 TGCACTCTTCAATTTTAAAGTAACAAA 57.138 25.926 0.00 0.00 0.00 2.83
265 266 9.767684 TTTAAAGTAACAAATATGTGCGATGAG 57.232 29.630 0.00 0.00 40.46 2.90
266 267 6.985188 AAGTAACAAATATGTGCGATGAGT 57.015 33.333 0.00 0.00 40.46 3.41
267 268 6.349973 AGTAACAAATATGTGCGATGAGTG 57.650 37.500 0.00 0.00 40.46 3.51
268 269 6.106003 AGTAACAAATATGTGCGATGAGTGA 58.894 36.000 0.00 0.00 40.46 3.41
269 270 6.763135 AGTAACAAATATGTGCGATGAGTGAT 59.237 34.615 0.00 0.00 40.46 3.06
270 271 7.926018 AGTAACAAATATGTGCGATGAGTGATA 59.074 33.333 0.00 0.00 40.46 2.15
271 272 6.530913 ACAAATATGTGCGATGAGTGATAC 57.469 37.500 0.00 0.00 38.69 2.24
272 273 5.466728 ACAAATATGTGCGATGAGTGATACC 59.533 40.000 0.00 0.00 38.69 2.73
273 274 4.871933 ATATGTGCGATGAGTGATACCA 57.128 40.909 0.00 0.00 0.00 3.25
274 275 3.758755 ATGTGCGATGAGTGATACCAT 57.241 42.857 0.00 0.00 0.00 3.55
275 276 4.871933 ATGTGCGATGAGTGATACCATA 57.128 40.909 0.00 0.00 0.00 2.74
276 277 4.871933 TGTGCGATGAGTGATACCATAT 57.128 40.909 0.00 0.00 0.00 1.78
277 278 5.213891 TGTGCGATGAGTGATACCATATT 57.786 39.130 0.00 0.00 0.00 1.28
278 279 5.230182 TGTGCGATGAGTGATACCATATTC 58.770 41.667 0.00 0.00 0.00 1.75
279 280 5.221422 TGTGCGATGAGTGATACCATATTCA 60.221 40.000 0.00 0.00 0.00 2.57
280 281 5.871524 GTGCGATGAGTGATACCATATTCAT 59.128 40.000 0.00 0.00 0.00 2.57
281 282 7.035612 GTGCGATGAGTGATACCATATTCATA 58.964 38.462 0.00 0.00 0.00 2.15
282 283 7.708322 GTGCGATGAGTGATACCATATTCATAT 59.292 37.037 0.00 0.00 0.00 1.78
283 284 8.260114 TGCGATGAGTGATACCATATTCATATT 58.740 33.333 0.00 0.00 0.00 1.28
284 285 8.759641 GCGATGAGTGATACCATATTCATATTC 58.240 37.037 0.00 0.00 0.00 1.75
285 286 9.807649 CGATGAGTGATACCATATTCATATTCA 57.192 33.333 0.00 0.00 0.00 2.57
322 323 9.434420 TTTGATTGATATGGAATTTTCACAACC 57.566 29.630 0.00 0.00 0.00 3.77
323 324 8.131847 TGATTGATATGGAATTTTCACAACCA 57.868 30.769 0.00 0.00 35.09 3.67
324 325 8.034215 TGATTGATATGGAATTTTCACAACCAC 58.966 33.333 0.00 0.00 33.38 4.16
325 326 7.537596 TTGATATGGAATTTTCACAACCACT 57.462 32.000 0.00 0.00 33.38 4.00
326 327 7.156876 TGATATGGAATTTTCACAACCACTC 57.843 36.000 0.00 0.00 33.38 3.51
327 328 4.871933 ATGGAATTTTCACAACCACTCC 57.128 40.909 0.00 0.00 33.38 3.85
328 329 2.962421 TGGAATTTTCACAACCACTCCC 59.038 45.455 0.00 0.00 0.00 4.30
329 330 3.230976 GGAATTTTCACAACCACTCCCT 58.769 45.455 0.00 0.00 0.00 4.20
330 331 3.255888 GGAATTTTCACAACCACTCCCTC 59.744 47.826 0.00 0.00 0.00 4.30
331 332 2.358322 TTTTCACAACCACTCCCTCC 57.642 50.000 0.00 0.00 0.00 4.30
332 333 1.217916 TTTCACAACCACTCCCTCCA 58.782 50.000 0.00 0.00 0.00 3.86
333 334 1.444933 TTCACAACCACTCCCTCCAT 58.555 50.000 0.00 0.00 0.00 3.41
334 335 1.444933 TCACAACCACTCCCTCCATT 58.555 50.000 0.00 0.00 0.00 3.16
335 336 1.351017 TCACAACCACTCCCTCCATTC 59.649 52.381 0.00 0.00 0.00 2.67
336 337 0.698818 ACAACCACTCCCTCCATTCC 59.301 55.000 0.00 0.00 0.00 3.01
337 338 0.034089 CAACCACTCCCTCCATTCCC 60.034 60.000 0.00 0.00 0.00 3.97
338 339 0.477597 AACCACTCCCTCCATTCCCA 60.478 55.000 0.00 0.00 0.00 4.37
339 340 0.477597 ACCACTCCCTCCATTCCCAA 60.478 55.000 0.00 0.00 0.00 4.12
340 341 0.704076 CCACTCCCTCCATTCCCAAA 59.296 55.000 0.00 0.00 0.00 3.28
341 342 1.288932 CCACTCCCTCCATTCCCAAAT 59.711 52.381 0.00 0.00 0.00 2.32
342 343 2.381911 CACTCCCTCCATTCCCAAATG 58.618 52.381 0.00 0.00 41.69 2.32
343 344 2.003072 ACTCCCTCCATTCCCAAATGT 58.997 47.619 0.00 0.00 40.63 2.71
344 345 3.053693 CACTCCCTCCATTCCCAAATGTA 60.054 47.826 0.00 0.00 40.63 2.29
345 346 3.596046 ACTCCCTCCATTCCCAAATGTAA 59.404 43.478 0.00 0.00 40.63 2.41
346 347 4.210331 CTCCCTCCATTCCCAAATGTAAG 58.790 47.826 0.00 0.00 40.63 2.34
347 348 2.695147 CCCTCCATTCCCAAATGTAAGC 59.305 50.000 0.00 0.00 40.63 3.09
348 349 2.695147 CCTCCATTCCCAAATGTAAGCC 59.305 50.000 0.00 0.00 40.63 4.35
349 350 3.628257 CCTCCATTCCCAAATGTAAGCCT 60.628 47.826 0.00 0.00 40.63 4.58
350 351 4.026052 CTCCATTCCCAAATGTAAGCCTT 58.974 43.478 0.00 0.00 40.63 4.35
351 352 4.424842 TCCATTCCCAAATGTAAGCCTTT 58.575 39.130 0.00 0.00 40.63 3.11
352 353 4.843516 TCCATTCCCAAATGTAAGCCTTTT 59.156 37.500 0.00 0.00 40.63 2.27
353 354 5.309282 TCCATTCCCAAATGTAAGCCTTTTT 59.691 36.000 0.00 0.00 40.63 1.94
354 355 6.498651 TCCATTCCCAAATGTAAGCCTTTTTA 59.501 34.615 0.00 0.00 40.63 1.52
355 356 7.016661 TCCATTCCCAAATGTAAGCCTTTTTAA 59.983 33.333 0.00 0.00 40.63 1.52
356 357 7.663493 CCATTCCCAAATGTAAGCCTTTTTAAA 59.337 33.333 0.00 0.00 40.63 1.52
357 358 8.720562 CATTCCCAAATGTAAGCCTTTTTAAAG 58.279 33.333 0.00 0.00 37.97 1.85
358 359 7.604657 TCCCAAATGTAAGCCTTTTTAAAGA 57.395 32.000 3.84 0.00 38.28 2.52
359 360 8.201242 TCCCAAATGTAAGCCTTTTTAAAGAT 57.799 30.769 3.84 0.00 38.28 2.40
360 361 8.655901 TCCCAAATGTAAGCCTTTTTAAAGATT 58.344 29.630 3.84 1.92 38.28 2.40
361 362 8.935844 CCCAAATGTAAGCCTTTTTAAAGATTC 58.064 33.333 3.84 0.00 38.28 2.52
362 363 8.935844 CCAAATGTAAGCCTTTTTAAAGATTCC 58.064 33.333 3.84 0.00 38.28 3.01
363 364 9.487790 CAAATGTAAGCCTTTTTAAAGATTCCA 57.512 29.630 3.84 0.00 38.28 3.53
365 366 9.489084 AATGTAAGCCTTTTTAAAGATTCCAAC 57.511 29.630 3.84 0.00 38.28 3.77
366 367 8.012957 TGTAAGCCTTTTTAAAGATTCCAACA 57.987 30.769 3.84 0.00 38.28 3.33
367 368 8.478877 TGTAAGCCTTTTTAAAGATTCCAACAA 58.521 29.630 3.84 0.00 38.28 2.83
368 369 8.978539 GTAAGCCTTTTTAAAGATTCCAACAAG 58.021 33.333 3.84 0.00 38.28 3.16
369 370 7.124573 AGCCTTTTTAAAGATTCCAACAAGT 57.875 32.000 3.84 0.00 38.28 3.16
370 371 6.986231 AGCCTTTTTAAAGATTCCAACAAGTG 59.014 34.615 3.84 0.00 38.28 3.16
371 372 6.983890 GCCTTTTTAAAGATTCCAACAAGTGA 59.016 34.615 3.84 0.00 38.28 3.41
372 373 7.042725 GCCTTTTTAAAGATTCCAACAAGTGAC 60.043 37.037 3.84 0.00 38.28 3.67
373 374 8.197439 CCTTTTTAAAGATTCCAACAAGTGACT 58.803 33.333 3.84 0.00 38.28 3.41
376 377 8.740123 TTTAAAGATTCCAACAAGTGACTACA 57.260 30.769 0.00 0.00 0.00 2.74
377 378 8.918202 TTAAAGATTCCAACAAGTGACTACAT 57.082 30.769 0.00 0.00 0.00 2.29
380 381 8.498054 AAGATTCCAACAAGTGACTACATATG 57.502 34.615 0.00 0.00 0.00 1.78
381 382 7.851228 AGATTCCAACAAGTGACTACATATGA 58.149 34.615 10.38 0.00 0.00 2.15
382 383 8.321353 AGATTCCAACAAGTGACTACATATGAA 58.679 33.333 10.38 0.00 0.00 2.57
383 384 7.905604 TTCCAACAAGTGACTACATATGAAG 57.094 36.000 10.38 0.00 0.00 3.02
384 385 7.004555 TCCAACAAGTGACTACATATGAAGT 57.995 36.000 10.38 0.00 0.00 3.01
385 386 8.129496 TCCAACAAGTGACTACATATGAAGTA 57.871 34.615 10.38 0.00 0.00 2.24
386 387 8.590204 TCCAACAAGTGACTACATATGAAGTAA 58.410 33.333 10.38 0.00 0.00 2.24
387 388 9.214957 CCAACAAGTGACTACATATGAAGTAAA 57.785 33.333 10.38 0.00 0.00 2.01
492 493 4.828072 AGAAACAAAGGGAGTAGCTAGG 57.172 45.455 0.00 0.00 0.00 3.02
493 494 3.055021 AGAAACAAAGGGAGTAGCTAGGC 60.055 47.826 0.00 0.00 0.00 3.93
494 495 1.205055 ACAAAGGGAGTAGCTAGGCC 58.795 55.000 0.00 0.00 0.00 5.19
495 496 1.204146 CAAAGGGAGTAGCTAGGCCA 58.796 55.000 5.01 0.00 0.00 5.36
496 497 1.559682 CAAAGGGAGTAGCTAGGCCAA 59.440 52.381 5.01 0.00 0.00 4.52
497 498 1.501582 AAGGGAGTAGCTAGGCCAAG 58.498 55.000 5.01 0.00 0.00 3.61
498 499 0.399233 AGGGAGTAGCTAGGCCAAGG 60.399 60.000 5.01 0.00 0.00 3.61
499 500 0.398664 GGGAGTAGCTAGGCCAAGGA 60.399 60.000 5.01 0.00 0.00 3.36
500 501 0.753867 GGAGTAGCTAGGCCAAGGAC 59.246 60.000 5.01 0.00 0.00 3.85
501 502 0.386113 GAGTAGCTAGGCCAAGGACG 59.614 60.000 5.01 0.00 0.00 4.79
502 503 1.043673 AGTAGCTAGGCCAAGGACGG 61.044 60.000 5.01 0.00 0.00 4.79
518 519 4.222847 GGCCGTCATCCCCGTCTC 62.223 72.222 0.00 0.00 0.00 3.36
519 520 4.222847 GCCGTCATCCCCGTCTCC 62.223 72.222 0.00 0.00 0.00 3.71
520 521 2.442272 CCGTCATCCCCGTCTCCT 60.442 66.667 0.00 0.00 0.00 3.69
521 522 2.786495 CCGTCATCCCCGTCTCCTG 61.786 68.421 0.00 0.00 0.00 3.86
522 523 2.501610 GTCATCCCCGTCTCCTGC 59.498 66.667 0.00 0.00 0.00 4.85
523 524 2.060980 GTCATCCCCGTCTCCTGCT 61.061 63.158 0.00 0.00 0.00 4.24
524 525 1.306141 TCATCCCCGTCTCCTGCTT 60.306 57.895 0.00 0.00 0.00 3.91
525 526 1.153289 CATCCCCGTCTCCTGCTTG 60.153 63.158 0.00 0.00 0.00 4.01
526 527 2.370445 ATCCCCGTCTCCTGCTTGG 61.370 63.158 0.00 0.00 37.10 3.61
527 528 2.822643 ATCCCCGTCTCCTGCTTGGA 62.823 60.000 0.00 0.00 43.86 3.53
528 529 2.266055 CCCGTCTCCTGCTTGGAC 59.734 66.667 0.00 0.00 40.56 4.02
531 532 4.580835 GTCTCCTGCTTGGACGAC 57.419 61.111 0.00 10.42 40.56 4.34
532 533 1.968310 GTCTCCTGCTTGGACGACT 59.032 57.895 14.76 0.00 40.56 4.18
533 534 0.389166 GTCTCCTGCTTGGACGACTG 60.389 60.000 14.76 1.52 40.56 3.51
534 535 0.539669 TCTCCTGCTTGGACGACTGA 60.540 55.000 0.00 0.00 40.56 3.41
535 536 0.318441 CTCCTGCTTGGACGACTGAA 59.682 55.000 0.00 0.00 40.56 3.02
536 537 0.033504 TCCTGCTTGGACGACTGAAC 59.966 55.000 0.00 0.00 40.56 3.18
537 538 0.034059 CCTGCTTGGACGACTGAACT 59.966 55.000 0.00 0.00 38.35 3.01
538 539 1.143305 CTGCTTGGACGACTGAACTG 58.857 55.000 0.00 0.00 0.00 3.16
539 540 0.464036 TGCTTGGACGACTGAACTGT 59.536 50.000 0.00 0.00 0.00 3.55
540 541 1.134521 TGCTTGGACGACTGAACTGTT 60.135 47.619 0.00 0.00 0.00 3.16
544 545 4.588278 CTTGGACGACTGAACTGTTTTTC 58.412 43.478 0.00 0.00 0.00 2.29
556 557 7.926018 ACTGAACTGTTTTTCTTTTTCAGTTGT 59.074 29.630 12.43 4.23 46.92 3.32
558 559 7.383843 TGAACTGTTTTTCTTTTTCAGTTGTCC 59.616 33.333 12.43 1.51 45.30 4.02
560 561 8.117813 ACTGTTTTTCTTTTTCAGTTGTCCTA 57.882 30.769 0.00 0.00 36.17 2.94
568 569 6.879458 TCTTTTTCAGTTGTCCTAGGATTAGC 59.121 38.462 16.27 9.56 0.00 3.09
611 615 3.825498 GAACTGCGATGTTCATACGAG 57.175 47.619 13.59 0.00 44.00 4.18
618 622 0.179084 ATGTTCATACGAGGCACCCG 60.179 55.000 0.00 0.00 34.03 5.28
637 642 1.968540 GCACAGCCACCTCTTCACC 60.969 63.158 0.00 0.00 0.00 4.02
639 644 0.976641 CACAGCCACCTCTTCACCTA 59.023 55.000 0.00 0.00 0.00 3.08
641 646 1.270907 CAGCCACCTCTTCACCTACT 58.729 55.000 0.00 0.00 0.00 2.57
702 714 4.988598 AGGGGCACACAAGCGACG 62.989 66.667 0.00 0.00 34.64 5.12
736 754 1.689273 ACTTGCCGTGAGAAGAGAAGT 59.311 47.619 0.00 0.00 0.00 3.01
738 756 0.319900 TGCCGTGAGAAGAGAAGTGC 60.320 55.000 0.00 0.00 0.00 4.40
742 760 2.288457 CCGTGAGAAGAGAAGTGCAGAA 60.288 50.000 0.00 0.00 0.00 3.02
828 846 2.042930 AAATCCCGCTCCCCTCCT 59.957 61.111 0.00 0.00 0.00 3.69
947 965 1.475441 GAGATCAAGAACTCGCCGCG 61.475 60.000 6.39 6.39 0.00 6.46
961 979 3.777925 CGCGCGTTGGTCCTTGAG 61.778 66.667 24.19 0.00 0.00 3.02
962 980 4.090057 GCGCGTTGGTCCTTGAGC 62.090 66.667 8.43 0.00 0.00 4.26
963 981 2.357517 CGCGTTGGTCCTTGAGCT 60.358 61.111 0.00 0.00 0.00 4.09
964 982 1.961277 CGCGTTGGTCCTTGAGCTT 60.961 57.895 0.00 0.00 0.00 3.74
965 983 1.576421 GCGTTGGTCCTTGAGCTTG 59.424 57.895 0.00 0.00 0.00 4.01
966 984 0.884704 GCGTTGGTCCTTGAGCTTGA 60.885 55.000 0.00 0.00 0.00 3.02
967 985 1.151668 CGTTGGTCCTTGAGCTTGAG 58.848 55.000 0.00 0.00 0.00 3.02
983 1001 3.170672 AGCACCCACACAGCTCCA 61.171 61.111 0.00 0.00 32.05 3.86
984 1002 2.670934 GCACCCACACAGCTCCAG 60.671 66.667 0.00 0.00 0.00 3.86
985 1003 2.670934 CACCCACACAGCTCCAGC 60.671 66.667 0.00 0.00 42.49 4.85
1006 1024 3.866582 GGAGGAGGACCATGGCCG 61.867 72.222 13.04 0.00 38.94 6.13
1459 1477 4.767255 CACGTCTCCCCTGCCTGC 62.767 72.222 0.00 0.00 0.00 4.85
1512 1530 3.889196 TGTAATCTGCCGTGTTTTCAC 57.111 42.857 0.00 0.00 46.33 3.18
1558 1585 7.841915 TGGTGTACTATCATGTTTGTATGTG 57.158 36.000 0.00 0.00 0.00 3.21
1565 1592 5.885230 ATCATGTTTGTATGTGTGTGAGG 57.115 39.130 0.00 0.00 0.00 3.86
1574 1601 2.036958 TGTGTGTGAGGTGGTGAAAG 57.963 50.000 0.00 0.00 0.00 2.62
1577 1604 3.214328 GTGTGTGAGGTGGTGAAAGATT 58.786 45.455 0.00 0.00 0.00 2.40
1615 1646 2.247267 GCAACCGCGTGTGTGTAC 59.753 61.111 4.92 0.00 0.00 2.90
1646 1680 7.558807 TGCCACATGAATGATTTTATCTCTCTT 59.441 33.333 0.00 0.00 0.00 2.85
1663 1706 7.808279 TCTCTCTTTTCCCCATAGTAGAAAA 57.192 36.000 0.00 0.00 37.20 2.29
1673 1716 8.519799 TCCCCATAGTAGAAAAGCAATTTTAG 57.480 34.615 0.00 0.00 0.00 1.85
1675 1718 8.190784 CCCCATAGTAGAAAAGCAATTTTAGTG 58.809 37.037 0.00 0.00 0.00 2.74
1689 1732 3.897141 TTTAGTGTGCACGGGATATCA 57.103 42.857 13.13 0.00 36.20 2.15
1695 1738 1.862123 GCACGGGATATCATGTGCG 59.138 57.895 25.94 7.38 46.80 5.34
1698 1741 2.328473 CACGGGATATCATGTGCGTAG 58.672 52.381 12.02 0.00 0.00 3.51
1704 1747 4.177026 GGATATCATGTGCGTAGATCCAC 58.823 47.826 4.83 0.00 33.12 4.02
1709 1752 0.963856 TGTGCGTAGATCCACCGTCT 60.964 55.000 0.00 0.00 0.00 4.18
1711 1754 0.963856 TGCGTAGATCCACCGTCTGT 60.964 55.000 0.00 0.00 0.00 3.41
1722 1765 0.107410 ACCGTCTGTGGTTGCTTTGA 60.107 50.000 0.00 0.00 39.99 2.69
1727 1770 3.141398 GTCTGTGGTTGCTTTGAGATCA 58.859 45.455 0.00 0.00 0.00 2.92
1735 1778 3.969287 TGCTTTGAGATCAGTGCTACT 57.031 42.857 0.00 0.00 0.00 2.57
1739 1782 6.230472 TGCTTTGAGATCAGTGCTACTTTTA 58.770 36.000 0.00 0.00 0.00 1.52
1740 1783 6.881065 TGCTTTGAGATCAGTGCTACTTTTAT 59.119 34.615 0.00 0.00 0.00 1.40
1741 1784 7.065085 TGCTTTGAGATCAGTGCTACTTTTATC 59.935 37.037 0.00 0.00 0.00 1.75
1746 1789 8.939929 TGAGATCAGTGCTACTTTTATCTTTTG 58.060 33.333 0.00 0.00 0.00 2.44
1747 1790 9.155975 GAGATCAGTGCTACTTTTATCTTTTGA 57.844 33.333 0.00 0.00 0.00 2.69
1748 1791 8.940952 AGATCAGTGCTACTTTTATCTTTTGAC 58.059 33.333 0.00 0.00 0.00 3.18
1749 1792 7.435068 TCAGTGCTACTTTTATCTTTTGACC 57.565 36.000 0.00 0.00 0.00 4.02
1753 1796 8.914011 AGTGCTACTTTTATCTTTTGACCTTTT 58.086 29.630 0.00 0.00 0.00 2.27
1873 1925 6.459298 GGTTAACTCATCTTCAATCATGGCAG 60.459 42.308 5.42 0.00 0.00 4.85
1895 1947 8.062448 GGCAGTACAACGAATATCAGAAATAAC 58.938 37.037 0.00 0.00 0.00 1.89
1929 1981 1.264749 ATTCCGCAGACCACCTAGCA 61.265 55.000 0.00 0.00 0.00 3.49
1943 1995 2.036733 ACCTAGCAACGACTACAAGCAA 59.963 45.455 0.00 0.00 0.00 3.91
1944 1996 3.064207 CCTAGCAACGACTACAAGCAAA 58.936 45.455 0.00 0.00 0.00 3.68
1953 2005 3.248602 CGACTACAAGCAAAGAAGCAAGT 59.751 43.478 0.00 0.00 36.85 3.16
1954 2006 4.260784 CGACTACAAGCAAAGAAGCAAGTT 60.261 41.667 0.00 0.00 36.85 2.66
1961 2013 2.388121 CAAAGAAGCAAGTTGAAGGCG 58.612 47.619 7.16 0.00 0.00 5.52
2003 2055 2.040544 CGCCGGAGCCTGACAAAAT 61.041 57.895 5.05 0.00 34.57 1.82
2018 2070 7.903431 GCCTGACAAAATTTATTGTAGTAGACG 59.097 37.037 0.00 0.00 43.31 4.18
2023 2075 9.275398 ACAAAATTTATTGTAGTAGACGGTTGA 57.725 29.630 0.00 0.00 41.56 3.18
2033 2085 5.996669 AGTAGACGGTTGAAAAATCGTTT 57.003 34.783 0.00 0.00 37.92 3.60
2041 2093 5.457473 CGGTTGAAAAATCGTTTTGCTAAGT 59.543 36.000 0.00 0.00 37.07 2.24
2045 2097 5.300792 TGAAAAATCGTTTTGCTAAGTCCCT 59.699 36.000 0.00 0.00 37.07 4.20
2060 2112 1.344763 GTCCCTATAGAACCAGCGCAT 59.655 52.381 11.47 0.00 0.00 4.73
2065 2117 2.231215 ATAGAACCAGCGCATCAGAC 57.769 50.000 11.47 0.00 0.00 3.51
2086 2138 2.647875 CAACCGCCGCCAATGAAA 59.352 55.556 0.00 0.00 0.00 2.69
2088 2140 0.598680 CAACCGCCGCCAATGAAAAA 60.599 50.000 0.00 0.00 0.00 1.94
2092 2144 1.134175 CCGCCGCCAATGAAAAATAGT 59.866 47.619 0.00 0.00 0.00 2.12
2093 2145 2.356382 CCGCCGCCAATGAAAAATAGTA 59.644 45.455 0.00 0.00 0.00 1.82
2100 2152 7.094805 GCCGCCAATGAAAAATAGTATAGATCA 60.095 37.037 0.00 0.00 0.00 2.92
2101 2153 8.446273 CCGCCAATGAAAAATAGTATAGATCAG 58.554 37.037 0.00 0.00 0.00 2.90
2161 2216 3.624777 ACCAGATCCGAGCAAATTCATT 58.375 40.909 0.00 0.00 0.00 2.57
2178 2233 2.429250 TCATTAAGAACAGATCCGCCGA 59.571 45.455 0.00 0.00 0.00 5.54
2186 2241 0.389817 CAGATCCGCCGAAGACACAA 60.390 55.000 0.00 0.00 0.00 3.33
2188 2243 1.359459 GATCCGCCGAAGACACAACC 61.359 60.000 0.00 0.00 0.00 3.77
2196 2251 0.463116 GAAGACACAACCCCACACGT 60.463 55.000 0.00 0.00 0.00 4.49
2197 2252 0.463116 AAGACACAACCCCACACGTC 60.463 55.000 0.00 0.00 0.00 4.34
2208 2263 0.804364 CCACACGTCCACCAATGATG 59.196 55.000 0.00 0.00 0.00 3.07
2209 2264 0.168788 CACACGTCCACCAATGATGC 59.831 55.000 0.00 0.00 0.00 3.91
2210 2265 0.036732 ACACGTCCACCAATGATGCT 59.963 50.000 0.00 0.00 0.00 3.79
2218 2273 3.200605 TCCACCAATGATGCTAGACACAT 59.799 43.478 0.00 0.00 0.00 3.21
2235 2290 6.111382 AGACACATCATCGAGACAATGAATT 58.889 36.000 0.00 0.00 36.75 2.17
2313 2368 0.976963 CAATTGACATGCGTCGCAAC 59.023 50.000 25.66 18.00 45.80 4.17
2363 2418 5.690097 GCACCCTGATTTACCATCCATCTTA 60.690 44.000 0.00 0.00 0.00 2.10
2364 2419 6.546484 CACCCTGATTTACCATCCATCTTAT 58.454 40.000 0.00 0.00 0.00 1.73
2393 2448 8.703336 CATCAATATGATTACTTACAGGACGTG 58.297 37.037 0.00 0.00 34.28 4.49
2433 2488 9.684448 AACTGAATCAGTACTATCATCAATACG 57.316 33.333 17.04 0.00 44.62 3.06
2434 2489 9.067986 ACTGAATCAGTACTATCATCAATACGA 57.932 33.333 15.09 0.00 43.46 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.769822 TGCCTTTTTGATTTTTCATTGCCTTA 59.230 30.769 0.00 0.00 0.00 2.69
1 2 5.593502 TGCCTTTTTGATTTTTCATTGCCTT 59.406 32.000 0.00 0.00 0.00 4.35
2 3 5.008911 GTGCCTTTTTGATTTTTCATTGCCT 59.991 36.000 0.00 0.00 0.00 4.75
3 4 5.214417 GTGCCTTTTTGATTTTTCATTGCC 58.786 37.500 0.00 0.00 0.00 4.52
4 5 4.905295 CGTGCCTTTTTGATTTTTCATTGC 59.095 37.500 0.00 0.00 0.00 3.56
6 7 7.495135 AATCGTGCCTTTTTGATTTTTCATT 57.505 28.000 0.00 0.00 0.00 2.57
7 8 6.128849 CGAATCGTGCCTTTTTGATTTTTCAT 60.129 34.615 0.00 0.00 31.56 2.57
8 9 5.174761 CGAATCGTGCCTTTTTGATTTTTCA 59.825 36.000 0.00 0.00 31.56 2.69
9 10 5.388371 CCGAATCGTGCCTTTTTGATTTTTC 60.388 40.000 0.82 0.00 31.56 2.29
10 11 4.447389 CCGAATCGTGCCTTTTTGATTTTT 59.553 37.500 0.82 0.00 31.56 1.94
11 12 3.987220 CCGAATCGTGCCTTTTTGATTTT 59.013 39.130 0.82 0.00 31.56 1.82
12 13 3.254657 TCCGAATCGTGCCTTTTTGATTT 59.745 39.130 0.82 0.00 31.56 2.17
13 14 2.817258 TCCGAATCGTGCCTTTTTGATT 59.183 40.909 0.82 0.00 33.96 2.57
14 15 2.432444 TCCGAATCGTGCCTTTTTGAT 58.568 42.857 0.82 0.00 0.00 2.57
15 16 1.885560 TCCGAATCGTGCCTTTTTGA 58.114 45.000 0.82 0.00 0.00 2.69
16 17 2.697431 TTCCGAATCGTGCCTTTTTG 57.303 45.000 0.82 0.00 0.00 2.44
17 18 2.556622 ACATTCCGAATCGTGCCTTTTT 59.443 40.909 0.82 0.00 0.00 1.94
18 19 2.095263 CACATTCCGAATCGTGCCTTTT 60.095 45.455 0.82 0.00 0.00 2.27
19 20 1.468520 CACATTCCGAATCGTGCCTTT 59.531 47.619 0.82 0.00 0.00 3.11
20 21 1.086696 CACATTCCGAATCGTGCCTT 58.913 50.000 0.82 0.00 0.00 4.35
21 22 0.249120 TCACATTCCGAATCGTGCCT 59.751 50.000 0.82 0.00 0.00 4.75
22 23 0.652592 CTCACATTCCGAATCGTGCC 59.347 55.000 0.82 0.00 0.00 5.01
23 24 1.061131 CACTCACATTCCGAATCGTGC 59.939 52.381 0.82 0.00 0.00 5.34
24 25 2.345641 GTCACTCACATTCCGAATCGTG 59.654 50.000 0.82 13.32 0.00 4.35
25 26 2.231478 AGTCACTCACATTCCGAATCGT 59.769 45.455 0.82 0.00 0.00 3.73
26 27 2.881074 AGTCACTCACATTCCGAATCG 58.119 47.619 0.00 0.00 0.00 3.34
27 28 5.637810 TGTAAAGTCACTCACATTCCGAATC 59.362 40.000 0.00 0.00 0.00 2.52
28 29 5.547465 TGTAAAGTCACTCACATTCCGAAT 58.453 37.500 0.00 0.00 0.00 3.34
29 30 4.951254 TGTAAAGTCACTCACATTCCGAA 58.049 39.130 0.00 0.00 0.00 4.30
30 31 4.594123 TGTAAAGTCACTCACATTCCGA 57.406 40.909 0.00 0.00 0.00 4.55
31 32 5.862924 AATGTAAAGTCACTCACATTCCG 57.137 39.130 10.57 0.00 37.07 4.30
32 33 9.167311 AGAATAATGTAAAGTCACTCACATTCC 57.833 33.333 17.03 10.37 40.88 3.01
36 37 9.554395 TGAAAGAATAATGTAAAGTCACTCACA 57.446 29.630 0.00 0.00 0.00 3.58
37 38 9.813080 GTGAAAGAATAATGTAAAGTCACTCAC 57.187 33.333 0.00 0.00 32.16 3.51
38 39 9.554395 TGTGAAAGAATAATGTAAAGTCACTCA 57.446 29.630 0.00 0.00 35.14 3.41
48 49 9.671279 AGTGACATCATGTGAAAGAATAATGTA 57.329 29.630 0.00 0.00 0.00 2.29
49 50 8.571461 AGTGACATCATGTGAAAGAATAATGT 57.429 30.769 0.00 0.00 0.00 2.71
50 51 9.499585 GAAGTGACATCATGTGAAAGAATAATG 57.500 33.333 0.00 0.00 0.00 1.90
51 52 9.458727 AGAAGTGACATCATGTGAAAGAATAAT 57.541 29.630 0.00 0.00 0.00 1.28
52 53 8.853077 AGAAGTGACATCATGTGAAAGAATAA 57.147 30.769 0.00 0.00 0.00 1.40
54 55 9.458727 AATAGAAGTGACATCATGTGAAAGAAT 57.541 29.630 0.00 0.00 0.00 2.40
55 56 8.853077 AATAGAAGTGACATCATGTGAAAGAA 57.147 30.769 0.00 0.00 0.00 2.52
56 57 8.853077 AAATAGAAGTGACATCATGTGAAAGA 57.147 30.769 0.00 0.00 0.00 2.52
64 65 9.846248 GCAAGTTTAAAATAGAAGTGACATCAT 57.154 29.630 0.00 0.00 0.00 2.45
65 66 8.296713 GGCAAGTTTAAAATAGAAGTGACATCA 58.703 33.333 0.00 0.00 0.00 3.07
66 67 8.296713 TGGCAAGTTTAAAATAGAAGTGACATC 58.703 33.333 0.00 0.00 0.00 3.06
67 68 8.177119 TGGCAAGTTTAAAATAGAAGTGACAT 57.823 30.769 0.00 0.00 0.00 3.06
68 69 7.575414 TGGCAAGTTTAAAATAGAAGTGACA 57.425 32.000 0.00 0.00 0.00 3.58
69 70 7.381408 GGTTGGCAAGTTTAAAATAGAAGTGAC 59.619 37.037 0.00 0.00 0.00 3.67
70 71 7.286775 AGGTTGGCAAGTTTAAAATAGAAGTGA 59.713 33.333 0.00 0.00 0.00 3.41
71 72 7.433680 AGGTTGGCAAGTTTAAAATAGAAGTG 58.566 34.615 0.00 0.00 0.00 3.16
72 73 7.597288 AGGTTGGCAAGTTTAAAATAGAAGT 57.403 32.000 0.00 0.00 0.00 3.01
73 74 9.406828 GTTAGGTTGGCAAGTTTAAAATAGAAG 57.593 33.333 0.00 0.00 0.00 2.85
74 75 9.138596 AGTTAGGTTGGCAAGTTTAAAATAGAA 57.861 29.630 0.00 0.00 0.00 2.10
75 76 8.700439 AGTTAGGTTGGCAAGTTTAAAATAGA 57.300 30.769 0.00 0.00 0.00 1.98
76 77 9.191995 CAAGTTAGGTTGGCAAGTTTAAAATAG 57.808 33.333 0.00 0.00 0.00 1.73
77 78 8.697292 ACAAGTTAGGTTGGCAAGTTTAAAATA 58.303 29.630 0.00 0.00 0.00 1.40
78 79 7.561251 ACAAGTTAGGTTGGCAAGTTTAAAAT 58.439 30.769 0.00 0.00 0.00 1.82
79 80 6.937392 ACAAGTTAGGTTGGCAAGTTTAAAA 58.063 32.000 0.00 0.00 0.00 1.52
80 81 6.532988 ACAAGTTAGGTTGGCAAGTTTAAA 57.467 33.333 0.00 0.00 0.00 1.52
81 82 6.532988 AACAAGTTAGGTTGGCAAGTTTAA 57.467 33.333 0.00 0.00 0.00 1.52
82 83 7.826918 ATAACAAGTTAGGTTGGCAAGTTTA 57.173 32.000 0.00 0.00 0.00 2.01
83 84 6.724893 ATAACAAGTTAGGTTGGCAAGTTT 57.275 33.333 0.00 0.00 0.00 2.66
84 85 6.724893 AATAACAAGTTAGGTTGGCAAGTT 57.275 33.333 0.00 1.11 0.00 2.66
85 86 6.724893 AAATAACAAGTTAGGTTGGCAAGT 57.275 33.333 0.00 0.00 0.00 3.16
86 87 7.433680 AGAAAATAACAAGTTAGGTTGGCAAG 58.566 34.615 0.00 0.00 0.00 4.01
87 88 7.354751 AGAAAATAACAAGTTAGGTTGGCAA 57.645 32.000 0.00 0.00 0.00 4.52
88 89 6.969993 AGAAAATAACAAGTTAGGTTGGCA 57.030 33.333 0.00 0.00 0.00 4.92
89 90 7.658261 AGAAGAAAATAACAAGTTAGGTTGGC 58.342 34.615 0.00 0.00 0.00 4.52
115 116 9.354673 TCCAACTTCTCATCTTTCTAAAAACAT 57.645 29.630 0.00 0.00 0.00 2.71
116 117 8.746052 TCCAACTTCTCATCTTTCTAAAAACA 57.254 30.769 0.00 0.00 0.00 2.83
123 124 9.917887 ATTTCATATCCAACTTCTCATCTTTCT 57.082 29.630 0.00 0.00 0.00 2.52
187 188 9.337091 CGGTTGAAATTATAAAATCACTCGTTT 57.663 29.630 3.72 0.00 0.00 3.60
188 189 8.723311 TCGGTTGAAATTATAAAATCACTCGTT 58.277 29.630 15.92 0.00 0.00 3.85
189 190 8.259049 TCGGTTGAAATTATAAAATCACTCGT 57.741 30.769 15.92 0.00 0.00 4.18
190 191 9.716507 AATCGGTTGAAATTATAAAATCACTCG 57.283 29.630 13.12 13.12 0.00 4.18
192 193 9.801873 CCAATCGGTTGAAATTATAAAATCACT 57.198 29.630 10.75 0.00 37.53 3.41
193 194 9.581099 ACCAATCGGTTGAAATTATAAAATCAC 57.419 29.630 10.75 1.35 46.31 3.06
202 203 8.132362 GCATAACATACCAATCGGTTGAAATTA 58.868 33.333 10.75 1.92 46.31 1.40
203 204 6.978080 GCATAACATACCAATCGGTTGAAATT 59.022 34.615 10.75 0.00 46.31 1.82
204 205 6.096141 TGCATAACATACCAATCGGTTGAAAT 59.904 34.615 10.75 0.00 46.31 2.17
205 206 5.416013 TGCATAACATACCAATCGGTTGAAA 59.584 36.000 10.75 0.00 46.31 2.69
206 207 4.944317 TGCATAACATACCAATCGGTTGAA 59.056 37.500 10.75 0.00 46.31 2.69
207 208 4.334203 GTGCATAACATACCAATCGGTTGA 59.666 41.667 10.75 0.00 46.31 3.18
208 209 4.335315 AGTGCATAACATACCAATCGGTTG 59.665 41.667 0.00 0.00 46.31 3.77
209 210 4.523083 AGTGCATAACATACCAATCGGTT 58.477 39.130 0.00 0.00 46.31 4.44
211 212 4.380531 AGAGTGCATAACATACCAATCGG 58.619 43.478 0.00 0.00 38.77 4.18
212 213 5.523552 TGAAGAGTGCATAACATACCAATCG 59.476 40.000 0.00 0.00 0.00 3.34
213 214 6.925610 TGAAGAGTGCATAACATACCAATC 57.074 37.500 0.00 0.00 0.00 2.67
214 215 7.886629 ATTGAAGAGTGCATAACATACCAAT 57.113 32.000 0.00 0.00 0.00 3.16
215 216 7.701539 AATTGAAGAGTGCATAACATACCAA 57.298 32.000 0.00 0.00 0.00 3.67
216 217 7.701539 AAATTGAAGAGTGCATAACATACCA 57.298 32.000 0.00 0.00 0.00 3.25
226 227 9.862371 TTTGTTACTTTAAAATTGAAGAGTGCA 57.138 25.926 4.87 0.00 0.00 4.57
239 240 9.767684 CTCATCGCACATATTTGTTACTTTAAA 57.232 29.630 0.00 0.00 32.34 1.52
240 241 8.941977 ACTCATCGCACATATTTGTTACTTTAA 58.058 29.630 0.00 0.00 32.34 1.52
241 242 8.387354 CACTCATCGCACATATTTGTTACTTTA 58.613 33.333 0.00 0.00 32.34 1.85
242 243 7.119116 TCACTCATCGCACATATTTGTTACTTT 59.881 33.333 0.00 0.00 32.34 2.66
243 244 6.593770 TCACTCATCGCACATATTTGTTACTT 59.406 34.615 0.00 0.00 32.34 2.24
244 245 6.106003 TCACTCATCGCACATATTTGTTACT 58.894 36.000 0.00 0.00 32.34 2.24
245 246 6.344572 TCACTCATCGCACATATTTGTTAC 57.655 37.500 0.00 0.00 32.34 2.50
246 247 7.170828 GGTATCACTCATCGCACATATTTGTTA 59.829 37.037 0.00 0.00 32.34 2.41
247 248 6.017934 GGTATCACTCATCGCACATATTTGTT 60.018 38.462 0.00 0.00 32.34 2.83
248 249 5.466728 GGTATCACTCATCGCACATATTTGT 59.533 40.000 0.00 0.00 36.15 2.83
249 250 5.466393 TGGTATCACTCATCGCACATATTTG 59.534 40.000 0.00 0.00 0.00 2.32
250 251 5.610398 TGGTATCACTCATCGCACATATTT 58.390 37.500 0.00 0.00 0.00 1.40
251 252 5.213891 TGGTATCACTCATCGCACATATT 57.786 39.130 0.00 0.00 0.00 1.28
252 253 4.871933 TGGTATCACTCATCGCACATAT 57.128 40.909 0.00 0.00 0.00 1.78
253 254 4.871933 ATGGTATCACTCATCGCACATA 57.128 40.909 0.00 0.00 0.00 2.29
254 255 3.758755 ATGGTATCACTCATCGCACAT 57.241 42.857 0.00 0.00 0.00 3.21
255 256 4.871933 ATATGGTATCACTCATCGCACA 57.128 40.909 0.00 0.00 0.00 4.57
256 257 5.230182 TGAATATGGTATCACTCATCGCAC 58.770 41.667 0.00 0.00 0.00 5.34
257 258 5.467035 TGAATATGGTATCACTCATCGCA 57.533 39.130 0.00 0.00 0.00 5.10
258 259 8.654230 AATATGAATATGGTATCACTCATCGC 57.346 34.615 1.36 0.00 0.00 4.58
259 260 9.807649 TGAATATGAATATGGTATCACTCATCG 57.192 33.333 1.36 0.00 0.00 3.84
296 297 9.434420 GGTTGTGAAAATTCCATATCAATCAAA 57.566 29.630 0.00 0.00 0.00 2.69
297 298 8.591940 TGGTTGTGAAAATTCCATATCAATCAA 58.408 29.630 0.00 0.00 0.00 2.57
298 299 8.034215 GTGGTTGTGAAAATTCCATATCAATCA 58.966 33.333 0.00 0.00 0.00 2.57
299 300 8.253113 AGTGGTTGTGAAAATTCCATATCAATC 58.747 33.333 0.00 0.00 0.00 2.67
300 301 8.137745 AGTGGTTGTGAAAATTCCATATCAAT 57.862 30.769 0.00 0.00 0.00 2.57
301 302 7.309744 GGAGTGGTTGTGAAAATTCCATATCAA 60.310 37.037 0.00 0.00 0.00 2.57
302 303 6.152661 GGAGTGGTTGTGAAAATTCCATATCA 59.847 38.462 0.00 0.00 0.00 2.15
303 304 6.405842 GGGAGTGGTTGTGAAAATTCCATATC 60.406 42.308 0.00 0.00 0.00 1.63
304 305 5.422012 GGGAGTGGTTGTGAAAATTCCATAT 59.578 40.000 0.00 0.00 0.00 1.78
305 306 4.770010 GGGAGTGGTTGTGAAAATTCCATA 59.230 41.667 0.00 0.00 0.00 2.74
306 307 3.578282 GGGAGTGGTTGTGAAAATTCCAT 59.422 43.478 0.00 0.00 0.00 3.41
307 308 2.962421 GGGAGTGGTTGTGAAAATTCCA 59.038 45.455 0.00 0.00 0.00 3.53
308 309 3.230976 AGGGAGTGGTTGTGAAAATTCC 58.769 45.455 0.00 0.00 0.00 3.01
309 310 3.255888 GGAGGGAGTGGTTGTGAAAATTC 59.744 47.826 0.00 0.00 0.00 2.17
310 311 3.230976 GGAGGGAGTGGTTGTGAAAATT 58.769 45.455 0.00 0.00 0.00 1.82
311 312 2.176798 TGGAGGGAGTGGTTGTGAAAAT 59.823 45.455 0.00 0.00 0.00 1.82
312 313 1.566703 TGGAGGGAGTGGTTGTGAAAA 59.433 47.619 0.00 0.00 0.00 2.29
313 314 1.217916 TGGAGGGAGTGGTTGTGAAA 58.782 50.000 0.00 0.00 0.00 2.69
314 315 1.444933 ATGGAGGGAGTGGTTGTGAA 58.555 50.000 0.00 0.00 0.00 3.18
315 316 1.351017 GAATGGAGGGAGTGGTTGTGA 59.649 52.381 0.00 0.00 0.00 3.58
316 317 1.614317 GGAATGGAGGGAGTGGTTGTG 60.614 57.143 0.00 0.00 0.00 3.33
317 318 0.698818 GGAATGGAGGGAGTGGTTGT 59.301 55.000 0.00 0.00 0.00 3.32
318 319 0.034089 GGGAATGGAGGGAGTGGTTG 60.034 60.000 0.00 0.00 0.00 3.77
319 320 0.477597 TGGGAATGGAGGGAGTGGTT 60.478 55.000 0.00 0.00 0.00 3.67
320 321 0.477597 TTGGGAATGGAGGGAGTGGT 60.478 55.000 0.00 0.00 0.00 4.16
321 322 0.704076 TTTGGGAATGGAGGGAGTGG 59.296 55.000 0.00 0.00 0.00 4.00
322 323 2.291800 ACATTTGGGAATGGAGGGAGTG 60.292 50.000 4.39 0.00 45.56 3.51
323 324 2.003072 ACATTTGGGAATGGAGGGAGT 58.997 47.619 4.39 0.00 45.56 3.85
324 325 2.834638 ACATTTGGGAATGGAGGGAG 57.165 50.000 4.39 0.00 45.56 4.30
325 326 3.627237 GCTTACATTTGGGAATGGAGGGA 60.627 47.826 4.39 0.00 45.56 4.20
326 327 2.695147 GCTTACATTTGGGAATGGAGGG 59.305 50.000 4.39 0.00 45.56 4.30
327 328 2.695147 GGCTTACATTTGGGAATGGAGG 59.305 50.000 4.39 0.00 45.56 4.30
328 329 3.635591 AGGCTTACATTTGGGAATGGAG 58.364 45.455 4.39 3.28 45.56 3.86
329 330 3.756082 AGGCTTACATTTGGGAATGGA 57.244 42.857 4.39 0.00 45.56 3.41
330 331 4.824479 AAAGGCTTACATTTGGGAATGG 57.176 40.909 0.00 0.00 45.56 3.16
331 332 8.614469 TTTAAAAAGGCTTACATTTGGGAATG 57.386 30.769 0.00 0.00 46.47 2.67
332 333 8.655901 TCTTTAAAAAGGCTTACATTTGGGAAT 58.344 29.630 0.00 0.00 36.67 3.01
333 334 8.024145 TCTTTAAAAAGGCTTACATTTGGGAA 57.976 30.769 0.00 0.00 36.67 3.97
334 335 7.604657 TCTTTAAAAAGGCTTACATTTGGGA 57.395 32.000 0.00 0.00 36.67 4.37
335 336 8.846943 AATCTTTAAAAAGGCTTACATTTGGG 57.153 30.769 0.00 0.00 36.67 4.12
336 337 8.935844 GGAATCTTTAAAAAGGCTTACATTTGG 58.064 33.333 0.00 0.00 36.67 3.28
337 338 9.487790 TGGAATCTTTAAAAAGGCTTACATTTG 57.512 29.630 0.00 0.00 36.67 2.32
339 340 9.489084 GTTGGAATCTTTAAAAAGGCTTACATT 57.511 29.630 0.00 0.00 36.67 2.71
340 341 8.646900 TGTTGGAATCTTTAAAAAGGCTTACAT 58.353 29.630 0.00 0.00 36.67 2.29
341 342 8.012957 TGTTGGAATCTTTAAAAAGGCTTACA 57.987 30.769 0.00 0.00 36.67 2.41
342 343 8.880878 TTGTTGGAATCTTTAAAAAGGCTTAC 57.119 30.769 0.00 0.00 36.67 2.34
343 344 8.700973 ACTTGTTGGAATCTTTAAAAAGGCTTA 58.299 29.630 0.00 0.00 36.67 3.09
344 345 7.495606 CACTTGTTGGAATCTTTAAAAAGGCTT 59.504 33.333 0.00 0.00 36.67 4.35
345 346 6.986231 CACTTGTTGGAATCTTTAAAAAGGCT 59.014 34.615 2.77 0.00 36.67 4.58
346 347 6.983890 TCACTTGTTGGAATCTTTAAAAAGGC 59.016 34.615 2.77 0.00 36.67 4.35
347 348 8.197439 AGTCACTTGTTGGAATCTTTAAAAAGG 58.803 33.333 2.77 0.00 36.67 3.11
350 351 9.179909 TGTAGTCACTTGTTGGAATCTTTAAAA 57.820 29.630 0.00 0.00 0.00 1.52
351 352 8.740123 TGTAGTCACTTGTTGGAATCTTTAAA 57.260 30.769 0.00 0.00 0.00 1.52
352 353 8.918202 ATGTAGTCACTTGTTGGAATCTTTAA 57.082 30.769 0.00 0.00 0.00 1.52
354 355 8.950210 CATATGTAGTCACTTGTTGGAATCTTT 58.050 33.333 0.00 0.00 0.00 2.52
355 356 8.321353 TCATATGTAGTCACTTGTTGGAATCTT 58.679 33.333 1.90 0.00 0.00 2.40
356 357 7.851228 TCATATGTAGTCACTTGTTGGAATCT 58.149 34.615 1.90 0.00 0.00 2.40
357 358 8.492673 TTCATATGTAGTCACTTGTTGGAATC 57.507 34.615 1.90 0.00 0.00 2.52
358 359 8.103305 ACTTCATATGTAGTCACTTGTTGGAAT 58.897 33.333 9.03 0.00 0.00 3.01
359 360 7.450074 ACTTCATATGTAGTCACTTGTTGGAA 58.550 34.615 9.03 0.00 0.00 3.53
360 361 7.004555 ACTTCATATGTAGTCACTTGTTGGA 57.995 36.000 9.03 0.00 0.00 3.53
361 362 8.771920 TTACTTCATATGTAGTCACTTGTTGG 57.228 34.615 17.20 0.00 0.00 3.77
378 379 9.950496 AGTGTAGATTCACTCATTTTACTTCAT 57.050 29.630 0.00 0.00 44.07 2.57
466 467 8.483758 CCTAGCTACTCCCTTTGTTTCTAAATA 58.516 37.037 0.00 0.00 0.00 1.40
467 468 7.339482 CCTAGCTACTCCCTTTGTTTCTAAAT 58.661 38.462 0.00 0.00 0.00 1.40
468 469 6.708285 CCTAGCTACTCCCTTTGTTTCTAAA 58.292 40.000 0.00 0.00 0.00 1.85
469 470 5.338137 GCCTAGCTACTCCCTTTGTTTCTAA 60.338 44.000 0.00 0.00 0.00 2.10
470 471 4.161754 GCCTAGCTACTCCCTTTGTTTCTA 59.838 45.833 0.00 0.00 0.00 2.10
471 472 3.055021 GCCTAGCTACTCCCTTTGTTTCT 60.055 47.826 0.00 0.00 0.00 2.52
472 473 3.271729 GCCTAGCTACTCCCTTTGTTTC 58.728 50.000 0.00 0.00 0.00 2.78
473 474 2.026169 GGCCTAGCTACTCCCTTTGTTT 60.026 50.000 0.00 0.00 0.00 2.83
474 475 1.560146 GGCCTAGCTACTCCCTTTGTT 59.440 52.381 0.00 0.00 0.00 2.83
475 476 1.205055 GGCCTAGCTACTCCCTTTGT 58.795 55.000 0.00 0.00 0.00 2.83
476 477 1.204146 TGGCCTAGCTACTCCCTTTG 58.796 55.000 3.32 0.00 0.00 2.77
477 478 1.840635 CTTGGCCTAGCTACTCCCTTT 59.159 52.381 3.32 0.00 0.00 3.11
478 479 1.501582 CTTGGCCTAGCTACTCCCTT 58.498 55.000 3.32 0.00 0.00 3.95
479 480 0.399233 CCTTGGCCTAGCTACTCCCT 60.399 60.000 8.91 0.00 0.00 4.20
480 481 0.398664 TCCTTGGCCTAGCTACTCCC 60.399 60.000 8.91 0.00 0.00 4.30
481 482 0.753867 GTCCTTGGCCTAGCTACTCC 59.246 60.000 8.91 0.00 0.00 3.85
482 483 0.386113 CGTCCTTGGCCTAGCTACTC 59.614 60.000 8.91 0.00 0.00 2.59
483 484 1.043673 CCGTCCTTGGCCTAGCTACT 61.044 60.000 8.91 0.00 0.00 2.57
484 485 1.442148 CCGTCCTTGGCCTAGCTAC 59.558 63.158 8.91 8.09 0.00 3.58
485 486 3.950232 CCGTCCTTGGCCTAGCTA 58.050 61.111 8.91 0.00 0.00 3.32
493 494 2.511600 GATGACGGCCGTCCTTGG 60.512 66.667 45.59 13.00 43.97 3.61
494 495 2.511600 GGATGACGGCCGTCCTTG 60.512 66.667 45.59 13.79 45.58 3.61
501 502 4.222847 GAGACGGGGATGACGGCC 62.223 72.222 0.00 0.00 41.14 6.13
502 503 4.222847 GGAGACGGGGATGACGGC 62.223 72.222 0.00 0.00 40.35 5.68
503 504 2.442272 AGGAGACGGGGATGACGG 60.442 66.667 0.00 0.00 35.23 4.79
504 505 2.808315 CAGGAGACGGGGATGACG 59.192 66.667 0.00 0.00 37.36 4.35
505 506 1.617947 AAGCAGGAGACGGGGATGAC 61.618 60.000 0.00 0.00 0.00 3.06
506 507 1.306141 AAGCAGGAGACGGGGATGA 60.306 57.895 0.00 0.00 0.00 2.92
507 508 1.153289 CAAGCAGGAGACGGGGATG 60.153 63.158 0.00 0.00 0.00 3.51
508 509 2.370445 CCAAGCAGGAGACGGGGAT 61.370 63.158 0.00 0.00 41.22 3.85
509 510 3.003173 CCAAGCAGGAGACGGGGA 61.003 66.667 0.00 0.00 41.22 4.81
510 511 3.003173 TCCAAGCAGGAGACGGGG 61.003 66.667 0.00 0.00 43.07 5.73
517 518 0.033504 GTTCAGTCGTCCAAGCAGGA 59.966 55.000 0.00 0.00 46.75 3.86
518 519 0.034059 AGTTCAGTCGTCCAAGCAGG 59.966 55.000 0.00 0.00 39.47 4.85
519 520 1.143305 CAGTTCAGTCGTCCAAGCAG 58.857 55.000 0.00 0.00 0.00 4.24
520 521 0.464036 ACAGTTCAGTCGTCCAAGCA 59.536 50.000 0.00 0.00 0.00 3.91
521 522 1.583054 AACAGTTCAGTCGTCCAAGC 58.417 50.000 0.00 0.00 0.00 4.01
522 523 4.332819 AGAAAAACAGTTCAGTCGTCCAAG 59.667 41.667 0.00 0.00 0.00 3.61
523 524 4.258543 AGAAAAACAGTTCAGTCGTCCAA 58.741 39.130 0.00 0.00 0.00 3.53
524 525 3.869065 AGAAAAACAGTTCAGTCGTCCA 58.131 40.909 0.00 0.00 0.00 4.02
525 526 4.877323 AAGAAAAACAGTTCAGTCGTCC 57.123 40.909 0.00 0.00 0.00 4.79
526 527 6.799925 TGAAAAAGAAAAACAGTTCAGTCGTC 59.200 34.615 0.00 0.00 0.00 4.20
527 528 6.674066 TGAAAAAGAAAAACAGTTCAGTCGT 58.326 32.000 0.00 0.00 0.00 4.34
528 529 7.197486 CTGAAAAAGAAAAACAGTTCAGTCG 57.803 36.000 0.00 0.00 37.99 4.18
531 532 8.298030 ACAACTGAAAAAGAAAAACAGTTCAG 57.702 30.769 0.00 9.13 45.70 3.02
532 533 7.383843 GGACAACTGAAAAAGAAAAACAGTTCA 59.616 33.333 0.00 0.00 45.70 3.18
533 534 7.598869 AGGACAACTGAAAAAGAAAAACAGTTC 59.401 33.333 0.00 0.00 45.70 3.01
535 536 6.993079 AGGACAACTGAAAAAGAAAAACAGT 58.007 32.000 0.00 0.00 42.40 3.55
536 537 7.702348 CCTAGGACAACTGAAAAAGAAAAACAG 59.298 37.037 1.05 0.00 35.14 3.16
537 538 7.394923 TCCTAGGACAACTGAAAAAGAAAAACA 59.605 33.333 7.62 0.00 0.00 2.83
538 539 7.768240 TCCTAGGACAACTGAAAAAGAAAAAC 58.232 34.615 7.62 0.00 0.00 2.43
539 540 7.948034 TCCTAGGACAACTGAAAAAGAAAAA 57.052 32.000 7.62 0.00 0.00 1.94
540 541 8.533569 AATCCTAGGACAACTGAAAAAGAAAA 57.466 30.769 15.42 0.00 0.00 2.29
544 545 6.655003 TGCTAATCCTAGGACAACTGAAAAAG 59.345 38.462 15.42 1.05 0.00 2.27
556 557 1.752498 TCGCGTTTGCTAATCCTAGGA 59.248 47.619 15.46 15.46 39.65 2.94
558 559 4.795970 ATTTCGCGTTTGCTAATCCTAG 57.204 40.909 5.77 0.00 39.65 3.02
560 561 4.434713 AAATTTCGCGTTTGCTAATCCT 57.565 36.364 5.77 0.00 39.65 3.24
600 604 1.216977 CGGGTGCCTCGTATGAACA 59.783 57.895 0.00 0.00 0.00 3.18
637 642 4.950479 CCAGCAGGCCAAGAGTAG 57.050 61.111 5.01 0.00 0.00 2.57
664 676 4.554292 CTCGAGAGTTACATGGATGGATG 58.446 47.826 6.58 0.00 0.00 3.51
665 677 3.576118 CCTCGAGAGTTACATGGATGGAT 59.424 47.826 15.71 0.00 0.00 3.41
666 678 2.959030 CCTCGAGAGTTACATGGATGGA 59.041 50.000 15.71 0.00 0.00 3.41
667 679 2.036475 CCCTCGAGAGTTACATGGATGG 59.964 54.545 15.71 0.00 0.00 3.51
749 767 4.162509 GGATAAGGTATCTGAGCCATACCC 59.837 50.000 6.70 0.00 44.98 3.69
828 846 0.539986 GGGAATGCGAGGTTAGTGGA 59.460 55.000 0.00 0.00 0.00 4.02
895 913 2.799207 CGTACTACGTGGTGTTTGGTGT 60.799 50.000 15.58 0.00 36.74 4.16
947 965 0.884704 TCAAGCTCAAGGACCAACGC 60.885 55.000 0.00 0.00 0.00 4.84
961 979 2.912624 GCTGTGTGGGTGCTCAAGC 61.913 63.158 0.00 0.00 42.50 4.01
962 980 1.228063 AGCTGTGTGGGTGCTCAAG 60.228 57.895 0.00 0.00 30.41 3.02
963 981 2.918248 AGCTGTGTGGGTGCTCAA 59.082 55.556 0.00 0.00 30.41 3.02
966 984 3.170672 TGGAGCTGTGTGGGTGCT 61.171 61.111 0.00 0.00 40.02 4.40
967 985 2.670934 CTGGAGCTGTGTGGGTGC 60.671 66.667 0.00 0.00 0.00 5.01
983 1001 1.002274 ATGGTCCTCCTCCTTCGCT 59.998 57.895 0.00 0.00 34.23 4.93
984 1002 1.144936 CATGGTCCTCCTCCTTCGC 59.855 63.158 0.00 0.00 34.23 4.70
985 1003 1.826024 CCATGGTCCTCCTCCTTCG 59.174 63.158 2.57 0.00 34.23 3.79
987 1005 2.003548 GGCCATGGTCCTCCTCCTT 61.004 63.158 14.67 0.00 34.23 3.36
990 1008 4.554036 GCGGCCATGGTCCTCCTC 62.554 72.222 11.65 0.00 34.23 3.71
1512 1530 9.723447 CACCATCAGCGTATAATATAGAACTAG 57.277 37.037 0.00 0.00 0.00 2.57
1522 1540 7.462571 TGATAGTACACCATCAGCGTATAAT 57.537 36.000 0.00 0.00 0.00 1.28
1558 1585 3.476552 TCAATCTTTCACCACCTCACAC 58.523 45.455 0.00 0.00 0.00 3.82
1574 1601 6.203723 GCACTACCTGTCCAGATTAATCAATC 59.796 42.308 17.56 5.79 40.85 2.67
1577 1604 4.469586 TGCACTACCTGTCCAGATTAATCA 59.530 41.667 17.56 0.00 0.00 2.57
1592 1623 2.663852 ACACGCGGTTGCACTACC 60.664 61.111 12.47 0.00 42.97 3.18
1615 1646 4.713824 AAATCATTCATGTGGCACTGAG 57.286 40.909 19.83 8.59 0.00 3.35
1646 1680 7.790782 AAATTGCTTTTCTACTATGGGGAAA 57.209 32.000 0.00 0.00 0.00 3.13
1649 1683 8.190784 CACTAAAATTGCTTTTCTACTATGGGG 58.809 37.037 0.00 0.00 36.09 4.96
1663 1706 1.269448 CCCGTGCACACTAAAATTGCT 59.731 47.619 18.64 0.00 37.16 3.91
1673 1716 1.599071 CACATGATATCCCGTGCACAC 59.401 52.381 18.64 0.00 0.00 3.82
1689 1732 0.102481 GACGGTGGATCTACGCACAT 59.898 55.000 2.84 0.00 0.00 3.21
1704 1747 0.588252 CTCAAAGCAACCACAGACGG 59.412 55.000 0.00 0.00 0.00 4.79
1709 1752 2.880268 CACTGATCTCAAAGCAACCACA 59.120 45.455 0.00 0.00 0.00 4.17
1711 1754 1.881973 GCACTGATCTCAAAGCAACCA 59.118 47.619 0.00 0.00 0.00 3.67
1722 1765 8.940952 GTCAAAAGATAAAAGTAGCACTGATCT 58.059 33.333 0.00 0.00 29.45 2.75
1727 1770 8.465273 AAAGGTCAAAAGATAAAAGTAGCACT 57.535 30.769 0.00 0.00 0.00 4.40
1739 1782 9.579932 AAGACAGATTCTAAAAGGTCAAAAGAT 57.420 29.630 4.50 0.00 32.51 2.40
1740 1783 8.840321 CAAGACAGATTCTAAAAGGTCAAAAGA 58.160 33.333 4.50 0.00 32.51 2.52
1741 1784 7.592903 GCAAGACAGATTCTAAAAGGTCAAAAG 59.407 37.037 4.50 0.00 32.51 2.27
1746 1789 6.428159 TGAAGCAAGACAGATTCTAAAAGGTC 59.572 38.462 0.00 0.00 35.10 3.85
1747 1790 6.299141 TGAAGCAAGACAGATTCTAAAAGGT 58.701 36.000 0.00 0.00 35.10 3.50
1748 1791 6.808008 TGAAGCAAGACAGATTCTAAAAGG 57.192 37.500 0.00 0.00 35.10 3.11
1749 1792 8.725212 CTTTGAAGCAAGACAGATTCTAAAAG 57.275 34.615 0.00 0.00 35.10 2.27
1804 1850 9.586435 AAAATCTCGTTTCAAATGTTTTCTTCT 57.414 25.926 0.00 0.00 0.00 2.85
1838 1890 7.992008 TGAAGATGAGTTAACCGAAAGTTTTT 58.008 30.769 0.88 0.00 40.05 1.94
1848 1900 5.357878 TGCCATGATTGAAGATGAGTTAACC 59.642 40.000 0.88 0.00 0.00 2.85
1849 1901 6.094603 ACTGCCATGATTGAAGATGAGTTAAC 59.905 38.462 0.00 0.00 0.00 2.01
1852 1904 4.597004 ACTGCCATGATTGAAGATGAGTT 58.403 39.130 0.00 0.00 0.00 3.01
1854 1906 5.121105 TGTACTGCCATGATTGAAGATGAG 58.879 41.667 0.00 0.00 0.00 2.90
1895 1947 7.432252 GGTCTGCGGAATTAGATGTAATTTTTG 59.568 37.037 9.06 4.33 38.70 2.44
1908 1960 1.138266 GCTAGGTGGTCTGCGGAATTA 59.862 52.381 0.00 0.00 0.00 1.40
1910 1962 1.264749 TGCTAGGTGGTCTGCGGAAT 61.265 55.000 0.00 0.00 0.00 3.01
1911 1963 1.476845 TTGCTAGGTGGTCTGCGGAA 61.477 55.000 0.00 0.00 0.00 4.30
1929 1981 3.202906 TGCTTCTTTGCTTGTAGTCGTT 58.797 40.909 0.00 0.00 0.00 3.85
1943 1995 0.312102 GCGCCTTCAACTTGCTTCTT 59.688 50.000 0.00 0.00 0.00 2.52
1944 1996 1.845809 CGCGCCTTCAACTTGCTTCT 61.846 55.000 0.00 0.00 0.00 2.85
1967 2019 0.816825 CGAGGGAGGTGCATTGATGG 60.817 60.000 0.00 0.00 0.00 3.51
1969 2021 1.153086 GCGAGGGAGGTGCATTGAT 60.153 57.895 0.00 0.00 0.00 2.57
1995 2047 8.836268 ACCGTCTACTACAATAAATTTTGTCA 57.164 30.769 0.00 0.00 40.25 3.58
2018 2070 6.074516 GGACTTAGCAAAACGATTTTTCAACC 60.075 38.462 0.00 0.00 32.27 3.77
2023 2075 5.784578 AGGGACTTAGCAAAACGATTTTT 57.215 34.783 0.00 0.00 31.37 1.94
2027 2079 6.726490 TCTATAGGGACTTAGCAAAACGAT 57.274 37.500 0.00 0.00 41.75 3.73
2033 2085 4.101119 GCTGGTTCTATAGGGACTTAGCAA 59.899 45.833 19.13 0.00 41.75 3.91
2041 2093 1.618837 GATGCGCTGGTTCTATAGGGA 59.381 52.381 9.73 0.00 0.00 4.20
2045 2097 2.035961 GGTCTGATGCGCTGGTTCTATA 59.964 50.000 9.73 0.00 0.00 1.31
2060 2112 4.680237 CGGCGGTTGCTGGTCTGA 62.680 66.667 0.00 0.00 44.10 3.27
2100 2152 8.912988 TCATGTGTTTTTAGGTTGAATTCTTCT 58.087 29.630 7.05 4.29 0.00 2.85
2101 2153 9.528018 TTCATGTGTTTTTAGGTTGAATTCTTC 57.472 29.630 7.05 0.00 0.00 2.87
2108 2160 8.564574 GTCTACATTCATGTGTTTTTAGGTTGA 58.435 33.333 2.50 0.00 41.89 3.18
2161 2216 2.097036 TCTTCGGCGGATCTGTTCTTA 58.903 47.619 7.21 0.00 0.00 2.10
2178 2233 0.463116 GACGTGTGGGGTTGTGTCTT 60.463 55.000 0.00 0.00 0.00 3.01
2186 2241 2.457323 ATTGGTGGACGTGTGGGGT 61.457 57.895 0.00 0.00 0.00 4.95
2188 2243 0.322456 ATCATTGGTGGACGTGTGGG 60.322 55.000 0.00 0.00 0.00 4.61
2196 2251 2.571202 TGTGTCTAGCATCATTGGTGGA 59.429 45.455 0.00 0.00 38.35 4.02
2197 2252 2.989909 TGTGTCTAGCATCATTGGTGG 58.010 47.619 0.00 0.00 34.79 4.61
2208 2263 3.699779 TGTCTCGATGATGTGTCTAGC 57.300 47.619 0.00 0.00 0.00 3.42
2209 2264 5.825507 TCATTGTCTCGATGATGTGTCTAG 58.174 41.667 0.00 0.00 30.18 2.43
2210 2265 5.835113 TCATTGTCTCGATGATGTGTCTA 57.165 39.130 0.00 0.00 30.18 2.59
2218 2273 4.877251 TGCATGAATTCATTGTCTCGATGA 59.123 37.500 18.41 0.00 33.61 2.92
2223 2278 3.127548 ACCGTGCATGAATTCATTGTCTC 59.872 43.478 18.41 10.14 33.61 3.36
2224 2279 3.084039 ACCGTGCATGAATTCATTGTCT 58.916 40.909 18.41 0.00 33.61 3.41
2235 2290 0.175760 GGCTTCTCTACCGTGCATGA 59.824 55.000 7.72 0.00 0.00 3.07
2286 2341 3.761657 ACGCATGTCAATTGCATGTAAG 58.238 40.909 27.97 23.42 43.93 2.34
2292 2347 1.154244 GCGACGCATGTCAATTGCA 60.154 52.632 16.42 2.71 45.80 4.08
2297 2352 2.548787 CGTTGCGACGCATGTCAA 59.451 55.556 25.09 5.00 45.80 3.18
2386 2441 0.037232 GCAGCTAAAGTCCACGTCCT 60.037 55.000 0.00 0.00 0.00 3.85
2387 2442 1.019805 GGCAGCTAAAGTCCACGTCC 61.020 60.000 0.00 0.00 0.00 4.79
2393 2448 2.185004 TCAGTTGGCAGCTAAAGTCC 57.815 50.000 2.72 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.