Multiple sequence alignment - TraesCS5A01G256800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G256800 chr5A 100.000 5045 0 0 1 5045 472282478 472287522 0.000000e+00 9317
1 TraesCS5A01G256800 chr5D 93.873 4456 181 53 271 4661 369723878 369728306 0.000000e+00 6632
2 TraesCS5A01G256800 chr5D 84.322 236 25 7 9 242 369723091 369723316 2.360000e-53 220
3 TraesCS5A01G256800 chr5B 92.460 4536 196 72 233 4661 439065783 439070279 0.000000e+00 6348
4 TraesCS5A01G256800 chr5B 86.008 243 31 3 1 242 439065264 439065504 1.800000e-64 257
5 TraesCS5A01G256800 chr2D 81.776 856 122 24 1583 2424 518600971 518600136 0.000000e+00 686
6 TraesCS5A01G256800 chr2D 79.029 453 71 14 2636 3083 518600023 518599590 6.390000e-74 289
7 TraesCS5A01G256800 chr2B 81.723 859 119 26 1582 2424 610694674 610693838 0.000000e+00 682
8 TraesCS5A01G256800 chr2B 86.192 239 27 2 2636 2874 610693725 610693493 2.330000e-63 254
9 TraesCS5A01G256800 chr2A 81.439 862 116 31 1582 2424 662747073 662746237 0.000000e+00 665
10 TraesCS5A01G256800 chr2A 81.153 451 58 17 2636 3083 662746124 662745698 2.250000e-88 337
11 TraesCS5A01G256800 chr1A 74.751 602 126 20 1820 2411 10159826 10159241 3.900000e-61 246
12 TraesCS5A01G256800 chr1D 74.419 602 128 18 1820 2411 8925803 8925218 8.440000e-58 235
13 TraesCS5A01G256800 chr3D 85.616 146 21 0 4899 5044 388262422 388262567 2.430000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G256800 chr5A 472282478 472287522 5044 False 9317.0 9317 100.0000 1 5045 1 chr5A.!!$F1 5044
1 TraesCS5A01G256800 chr5D 369723091 369728306 5215 False 3426.0 6632 89.0975 9 4661 2 chr5D.!!$F1 4652
2 TraesCS5A01G256800 chr5B 439065264 439070279 5015 False 3302.5 6348 89.2340 1 4661 2 chr5B.!!$F1 4660
3 TraesCS5A01G256800 chr2D 518599590 518600971 1381 True 487.5 686 80.4025 1583 3083 2 chr2D.!!$R1 1500
4 TraesCS5A01G256800 chr2B 610693493 610694674 1181 True 468.0 682 83.9575 1582 2874 2 chr2B.!!$R1 1292
5 TraesCS5A01G256800 chr2A 662745698 662747073 1375 True 501.0 665 81.2960 1582 3083 2 chr2A.!!$R1 1501
6 TraesCS5A01G256800 chr1A 10159241 10159826 585 True 246.0 246 74.7510 1820 2411 1 chr1A.!!$R1 591
7 TraesCS5A01G256800 chr1D 8925218 8925803 585 True 235.0 235 74.4190 1820 2411 1 chr1D.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 1023 0.035915 GGGAGAAGCACCAAGAGACC 60.036 60.000 0.00 0.00 0.00 3.85 F
924 1534 1.226888 GATCTCCACACGTACGCCC 60.227 63.158 16.72 0.00 0.00 6.13 F
925 1535 1.940883 GATCTCCACACGTACGCCCA 61.941 60.000 16.72 0.00 0.00 5.36 F
926 1536 1.945354 ATCTCCACACGTACGCCCAG 61.945 60.000 16.72 5.61 0.00 4.45 F
2944 3583 0.107312 GGCACTGATCCAGCTGTGAT 60.107 55.000 13.81 14.55 39.27 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2876 1.295423 CACCTTGGTGACGTAGGGG 59.705 63.158 14.15 0.0 38.66 4.79 R
2607 3242 2.859273 CTTCCAGGTGCCGATCGCTT 62.859 60.000 10.32 0.0 38.78 4.68 R
2944 3583 0.679321 TATGTGCCTGCGCCATGAAA 60.679 50.000 4.18 0.0 31.16 2.69 R
3401 4050 0.463295 CTTGGACGCAGCCAGATCAT 60.463 55.000 0.00 0.0 39.52 2.45 R
4315 4969 0.182299 GAGCTGGAGAAATGGAGGGG 59.818 60.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.934570 GCACAATGTGGGCTGGGTG 61.935 63.158 15.78 0.00 45.01 4.61
98 99 2.028763 GTGATGTACGTTGTGCCGTATG 59.971 50.000 0.00 0.00 44.27 2.39
180 182 7.636150 ACATATCAATGGAGAACAAAAGAGG 57.364 36.000 0.00 0.00 37.43 3.69
184 186 2.543777 TGGAGAACAAAAGAGGACCG 57.456 50.000 0.00 0.00 0.00 4.79
186 188 2.143925 GGAGAACAAAAGAGGACCGTG 58.856 52.381 0.00 0.00 0.00 4.94
206 208 1.731709 GGATCGGCCAATTTTTGTTGC 59.268 47.619 2.24 0.00 36.34 4.17
301 844 0.459585 TCGCGCACTATCTTTCACCC 60.460 55.000 8.75 0.00 0.00 4.61
319 862 2.629002 CCAACGGTTTGGTCTCCTG 58.371 57.895 0.00 0.00 46.63 3.86
321 864 0.944386 CAACGGTTTGGTCTCCTGTG 59.056 55.000 0.00 0.00 0.00 3.66
443 986 1.377987 CCACCACCATTACCACCGG 60.378 63.158 0.00 0.00 0.00 5.28
444 987 1.377987 CACCACCATTACCACCGGG 60.378 63.158 6.32 0.00 41.29 5.73
445 988 2.274104 CCACCATTACCACCGGGG 59.726 66.667 6.32 0.00 44.81 5.73
446 989 2.302509 CCACCATTACCACCGGGGA 61.303 63.158 4.41 0.00 41.15 4.81
474 1020 1.747709 CATGGGAGAAGCACCAAGAG 58.252 55.000 0.00 0.00 40.73 2.85
475 1021 1.280133 CATGGGAGAAGCACCAAGAGA 59.720 52.381 0.00 0.00 40.73 3.10
476 1022 0.687354 TGGGAGAAGCACCAAGAGAC 59.313 55.000 0.00 0.00 32.89 3.36
477 1023 0.035915 GGGAGAAGCACCAAGAGACC 60.036 60.000 0.00 0.00 0.00 3.85
512 1060 3.223674 TCAGCGAGACCATATCTACCA 57.776 47.619 0.00 0.00 38.00 3.25
535 1083 1.594564 GAAATAGGCCTCCGTCCGC 60.595 63.158 9.68 0.00 0.00 5.54
587 1149 2.029073 CACGGCGGTCTGACAGTT 59.971 61.111 13.24 0.00 0.00 3.16
659 1226 3.423154 GCCACCTCTTCCGTTGCG 61.423 66.667 0.00 0.00 0.00 4.85
757 1332 2.200067 GAGCAGATCAATCGTCAGGTG 58.800 52.381 0.00 0.00 0.00 4.00
818 1414 1.935300 GCCTGAACGAACACTGACGAT 60.935 52.381 0.00 0.00 0.00 3.73
924 1534 1.226888 GATCTCCACACGTACGCCC 60.227 63.158 16.72 0.00 0.00 6.13
925 1535 1.940883 GATCTCCACACGTACGCCCA 61.941 60.000 16.72 0.00 0.00 5.36
926 1536 1.945354 ATCTCCACACGTACGCCCAG 61.945 60.000 16.72 5.61 0.00 4.45
927 1537 4.367023 TCCACACGTACGCCCAGC 62.367 66.667 16.72 0.00 0.00 4.85
1008 1631 2.048690 GGAGGCGCGATGGATCTC 60.049 66.667 12.10 5.90 0.00 2.75
1075 1698 3.677527 TCGACTTCGACCAGGACC 58.322 61.111 0.00 0.00 44.22 4.46
1479 2102 2.435059 GTCGCCTTCCAGCAGGAC 60.435 66.667 0.00 0.00 45.73 3.85
1786 2412 2.124695 GGTCGGGCATCCTCAACC 60.125 66.667 0.00 0.00 0.00 3.77
2439 3074 2.815211 GAGAACCGCATGCTCGCA 60.815 61.111 17.13 0.00 0.00 5.10
2493 3128 3.473647 CCCAGCGATCTCCAGGCA 61.474 66.667 0.00 0.00 0.00 4.75
2944 3583 0.107312 GGCACTGATCCAGCTGTGAT 60.107 55.000 13.81 14.55 39.27 3.06
3397 4046 7.670364 CAGGTTAAAATCCTTCCTGTTGATTT 58.330 34.615 0.00 0.00 39.66 2.17
3401 4050 9.974980 GTTAAAATCCTTCCTGTTGATTTTACA 57.025 29.630 13.32 5.87 44.39 2.41
3411 4060 5.359009 CCTGTTGATTTTACATGATCTGGCT 59.641 40.000 0.00 0.00 0.00 4.75
3511 4161 2.963782 GACCACCATCTTCCTACGGTAT 59.036 50.000 0.00 0.00 0.00 2.73
3691 4341 2.338785 GCCCTTGCTCCTTGCTCAC 61.339 63.158 0.00 0.00 43.37 3.51
3702 4352 3.565307 TCCTTGCTCACCTGAAATTTGT 58.435 40.909 0.00 0.00 0.00 2.83
3739 4393 4.760530 TGTCATGAGCAATACTAAGCCT 57.239 40.909 0.00 0.00 0.00 4.58
3749 4403 7.775093 TGAGCAATACTAAGCCTATGTCATTTT 59.225 33.333 0.00 0.00 0.00 1.82
4052 4706 4.140963 GCGTTGAATTTTTGAAATTCGCC 58.859 39.130 16.76 10.86 38.99 5.54
4065 4719 2.352503 ATTCGCCATGAACACTTTGC 57.647 45.000 0.00 0.00 40.00 3.68
4256 4910 8.641541 ACAAAAAGATTGGACAGACATGTTAAT 58.358 29.630 0.00 0.00 40.68 1.40
4282 4936 4.752879 TGGCACCGAGTAAGGCGC 62.753 66.667 0.00 0.00 38.54 6.53
4292 4946 2.030717 CGAGTAAGGCGCTACATCATCT 60.031 50.000 7.64 0.00 0.00 2.90
4303 4957 5.523369 CGCTACATCATCTAACATGTGAGA 58.477 41.667 15.55 15.55 34.92 3.27
4305 4959 5.694006 GCTACATCATCTAACATGTGAGACC 59.306 44.000 15.52 0.00 34.92 3.85
4308 4962 5.899547 ACATCATCTAACATGTGAGACCCTA 59.100 40.000 15.52 1.94 31.80 3.53
4309 4963 6.041409 ACATCATCTAACATGTGAGACCCTAG 59.959 42.308 15.52 7.38 31.80 3.02
4314 4968 2.435693 ATGTGAGACCCTAGCCGGC 61.436 63.158 21.89 21.89 0.00 6.13
4315 4969 3.851128 GTGAGACCCTAGCCGGCC 61.851 72.222 26.15 6.38 0.00 6.13
4329 4983 2.603580 GGCCCCCTCCATTTCTCC 59.396 66.667 0.00 0.00 0.00 3.71
4341 4995 4.836825 TCCATTTCTCCAGCTCACTAAAG 58.163 43.478 0.00 0.00 0.00 1.85
4353 5007 7.432350 CAGCTCACTAAAGATGGATATTTCC 57.568 40.000 0.00 0.00 42.94 3.13
4354 5008 6.429385 CAGCTCACTAAAGATGGATATTTCCC 59.571 42.308 0.00 0.00 41.83 3.97
4386 5041 5.450453 TGGGACCTTTATTGACTCAAAACA 58.550 37.500 0.00 0.00 0.00 2.83
4388 5043 6.015519 TGGGACCTTTATTGACTCAAAACATG 60.016 38.462 0.00 0.00 0.00 3.21
4389 5044 6.208599 GGGACCTTTATTGACTCAAAACATGA 59.791 38.462 0.00 0.00 36.38 3.07
4390 5045 7.093771 GGGACCTTTATTGACTCAAAACATGAT 60.094 37.037 0.00 0.00 37.44 2.45
4407 5062 4.699735 ACATGATATCGAGGCAAAACAACA 59.300 37.500 0.00 0.00 0.00 3.33
4426 5081 2.061773 CAGCGTAGAGTTCACAACCAG 58.938 52.381 0.00 0.00 0.00 4.00
4430 5085 2.689646 GTAGAGTTCACAACCAGCCTC 58.310 52.381 0.00 0.00 0.00 4.70
4443 5100 4.193826 ACCAGCCTCTGCATATATAACG 57.806 45.455 0.00 0.00 41.13 3.18
4450 5107 7.594386 CAGCCTCTGCATATATAACGAGATATG 59.406 40.741 0.00 0.00 39.34 1.78
4481 5138 6.658816 ACCAAAATATCATGCTTCACACACTA 59.341 34.615 0.00 0.00 0.00 2.74
4482 5139 7.148188 ACCAAAATATCATGCTTCACACACTAG 60.148 37.037 0.00 0.00 0.00 2.57
4485 5142 7.783090 AATATCATGCTTCACACACTAGAAG 57.217 36.000 0.00 0.00 43.12 2.85
4499 5187 6.653740 ACACACTAGAAGCAAATTAAGGTACC 59.346 38.462 2.73 2.73 0.00 3.34
4568 5256 6.892658 TGTGTGTAAACATATCCTTTGCTT 57.107 33.333 0.00 0.00 0.00 3.91
4620 5308 0.401738 AGCTCCTTGTGCTTTAGCCA 59.598 50.000 0.00 0.00 41.18 4.75
4661 5350 0.740737 GTGCATTAGTCCCCATGTGC 59.259 55.000 0.00 0.00 0.00 4.57
4662 5351 0.330941 TGCATTAGTCCCCATGTGCA 59.669 50.000 0.00 0.00 39.94 4.57
4663 5352 1.063792 TGCATTAGTCCCCATGTGCAT 60.064 47.619 0.00 0.00 37.63 3.96
4664 5353 2.034124 GCATTAGTCCCCATGTGCATT 58.966 47.619 0.00 0.00 33.09 3.56
4665 5354 2.223876 GCATTAGTCCCCATGTGCATTG 60.224 50.000 0.00 0.00 33.09 2.82
4666 5355 3.289836 CATTAGTCCCCATGTGCATTGA 58.710 45.455 0.00 0.00 0.00 2.57
4667 5356 2.715749 TAGTCCCCATGTGCATTGAG 57.284 50.000 0.00 0.00 0.00 3.02
4668 5357 0.994247 AGTCCCCATGTGCATTGAGA 59.006 50.000 0.00 0.00 0.00 3.27
4669 5358 1.567649 AGTCCCCATGTGCATTGAGAT 59.432 47.619 0.00 0.00 0.00 2.75
4670 5359 2.779430 AGTCCCCATGTGCATTGAGATA 59.221 45.455 0.00 0.00 0.00 1.98
4671 5360 3.396946 AGTCCCCATGTGCATTGAGATAT 59.603 43.478 0.00 0.00 0.00 1.63
4672 5361 4.598807 AGTCCCCATGTGCATTGAGATATA 59.401 41.667 0.00 0.00 0.00 0.86
4673 5362 5.252397 AGTCCCCATGTGCATTGAGATATAT 59.748 40.000 0.00 0.00 0.00 0.86
4674 5363 6.444816 AGTCCCCATGTGCATTGAGATATATA 59.555 38.462 0.00 0.00 0.00 0.86
4675 5364 7.128418 AGTCCCCATGTGCATTGAGATATATAT 59.872 37.037 0.00 0.00 0.00 0.86
4676 5365 7.228108 GTCCCCATGTGCATTGAGATATATATG 59.772 40.741 0.00 0.00 0.00 1.78
4677 5366 7.127647 TCCCCATGTGCATTGAGATATATATGA 59.872 37.037 0.00 0.00 0.00 2.15
4678 5367 7.776500 CCCCATGTGCATTGAGATATATATGAA 59.224 37.037 0.00 0.00 0.00 2.57
4679 5368 8.837389 CCCATGTGCATTGAGATATATATGAAG 58.163 37.037 0.00 0.00 0.00 3.02
4680 5369 9.609346 CCATGTGCATTGAGATATATATGAAGA 57.391 33.333 0.00 0.00 0.00 2.87
4699 5388 7.677454 TGAAGATATGTTCCATATGTGATGC 57.323 36.000 9.91 0.00 0.00 3.91
4700 5389 7.225725 TGAAGATATGTTCCATATGTGATGCA 58.774 34.615 9.91 0.00 0.00 3.96
4701 5390 7.886446 TGAAGATATGTTCCATATGTGATGCAT 59.114 33.333 9.91 0.00 41.42 3.96
4702 5391 7.625828 AGATATGTTCCATATGTGATGCATG 57.374 36.000 2.46 0.00 38.47 4.06
4703 5392 3.994204 TGTTCCATATGTGATGCATGC 57.006 42.857 11.82 11.82 38.47 4.06
4704 5393 3.288964 TGTTCCATATGTGATGCATGCA 58.711 40.909 25.04 25.04 38.47 3.96
4705 5394 3.316868 TGTTCCATATGTGATGCATGCAG 59.683 43.478 26.69 9.39 38.47 4.41
4706 5395 3.495434 TCCATATGTGATGCATGCAGA 57.505 42.857 26.69 12.36 38.47 4.26
4707 5396 3.143728 TCCATATGTGATGCATGCAGAC 58.856 45.455 26.69 23.18 38.47 3.51
4708 5397 2.095919 CCATATGTGATGCATGCAGACG 60.096 50.000 26.69 11.37 38.47 4.18
4709 5398 2.600470 TATGTGATGCATGCAGACGA 57.400 45.000 26.69 13.40 38.47 4.20
4710 5399 1.963172 ATGTGATGCATGCAGACGAT 58.037 45.000 26.69 16.02 36.26 3.73
4711 5400 1.741528 TGTGATGCATGCAGACGATT 58.258 45.000 26.69 7.85 0.00 3.34
4712 5401 1.399089 TGTGATGCATGCAGACGATTG 59.601 47.619 26.69 0.00 0.00 2.67
4713 5402 1.018910 TGATGCATGCAGACGATTGG 58.981 50.000 26.69 0.00 0.00 3.16
4714 5403 1.302366 GATGCATGCAGACGATTGGA 58.698 50.000 26.69 0.00 0.00 3.53
4715 5404 1.878088 GATGCATGCAGACGATTGGAT 59.122 47.619 26.69 4.49 0.00 3.41
4716 5405 1.018910 TGCATGCAGACGATTGGATG 58.981 50.000 18.46 16.46 46.09 3.51
4717 5406 3.839654 CATGCAGACGATTGGATGC 57.160 52.632 10.96 5.01 39.49 3.91
4719 5408 3.482147 TGCAGACGATTGGATGCAT 57.518 47.368 0.00 0.00 43.34 3.96
4720 5409 1.753930 TGCAGACGATTGGATGCATT 58.246 45.000 0.00 0.00 43.34 3.56
4721 5410 2.093890 TGCAGACGATTGGATGCATTT 58.906 42.857 0.00 0.00 43.34 2.32
4722 5411 2.159352 TGCAGACGATTGGATGCATTTG 60.159 45.455 0.00 0.00 43.34 2.32
4723 5412 2.797087 GCAGACGATTGGATGCATTTGG 60.797 50.000 0.00 0.00 38.54 3.28
4724 5413 2.684374 CAGACGATTGGATGCATTTGGA 59.316 45.455 0.00 0.00 0.00 3.53
4725 5414 3.129113 CAGACGATTGGATGCATTTGGAA 59.871 43.478 0.00 0.00 0.00 3.53
4726 5415 3.956199 AGACGATTGGATGCATTTGGAAT 59.044 39.130 0.00 0.00 0.00 3.01
4727 5416 4.046462 GACGATTGGATGCATTTGGAATG 58.954 43.478 0.00 0.00 0.00 2.67
4728 5417 3.700539 ACGATTGGATGCATTTGGAATGA 59.299 39.130 0.00 0.00 0.00 2.57
4729 5418 4.160065 ACGATTGGATGCATTTGGAATGAA 59.840 37.500 0.00 0.00 0.00 2.57
4730 5419 5.163385 ACGATTGGATGCATTTGGAATGAAT 60.163 36.000 0.00 0.00 0.00 2.57
4731 5420 5.176774 CGATTGGATGCATTTGGAATGAATG 59.823 40.000 0.00 0.00 37.51 2.67
4740 5429 6.358118 CATTTGGAATGAATGCCATCAAAG 57.642 37.500 0.00 0.00 34.52 2.77
4741 5430 5.486735 TTTGGAATGAATGCCATCAAAGT 57.513 34.783 0.00 0.00 33.53 2.66
4742 5431 4.724074 TGGAATGAATGCCATCAAAGTC 57.276 40.909 0.00 0.00 33.53 3.01
4743 5432 4.087907 TGGAATGAATGCCATCAAAGTCA 58.912 39.130 0.00 0.00 33.53 3.41
4744 5433 4.527427 TGGAATGAATGCCATCAAAGTCAA 59.473 37.500 0.00 0.00 33.53 3.18
4745 5434 5.107133 GGAATGAATGCCATCAAAGTCAAG 58.893 41.667 0.00 0.00 33.53 3.02
4746 5435 5.105635 GGAATGAATGCCATCAAAGTCAAGA 60.106 40.000 0.00 0.00 33.53 3.02
4747 5436 6.406624 GGAATGAATGCCATCAAAGTCAAGAT 60.407 38.462 0.00 0.00 33.53 2.40
4748 5437 5.571784 TGAATGCCATCAAAGTCAAGATC 57.428 39.130 0.00 0.00 0.00 2.75
4749 5438 5.011586 TGAATGCCATCAAAGTCAAGATCA 58.988 37.500 0.00 0.00 0.00 2.92
4750 5439 5.655090 TGAATGCCATCAAAGTCAAGATCAT 59.345 36.000 0.00 0.00 0.00 2.45
4751 5440 6.153851 TGAATGCCATCAAAGTCAAGATCATT 59.846 34.615 0.00 0.00 0.00 2.57
4752 5441 7.339976 TGAATGCCATCAAAGTCAAGATCATTA 59.660 33.333 0.00 0.00 0.00 1.90
4753 5442 7.649533 ATGCCATCAAAGTCAAGATCATTAA 57.350 32.000 0.00 0.00 0.00 1.40
4754 5443 7.092137 TGCCATCAAAGTCAAGATCATTAAG 57.908 36.000 0.00 0.00 0.00 1.85
4755 5444 6.660521 TGCCATCAAAGTCAAGATCATTAAGT 59.339 34.615 0.00 0.00 0.00 2.24
4756 5445 7.177216 TGCCATCAAAGTCAAGATCATTAAGTT 59.823 33.333 0.00 0.00 0.00 2.66
4757 5446 8.677300 GCCATCAAAGTCAAGATCATTAAGTTA 58.323 33.333 0.00 0.00 0.00 2.24
4801 5490 7.707624 ATCTAGAATGTGCAAAAGAAATGGA 57.292 32.000 0.00 0.00 0.00 3.41
4802 5491 6.913170 TCTAGAATGTGCAAAAGAAATGGAC 58.087 36.000 0.00 0.00 39.31 4.02
4803 5492 5.796424 AGAATGTGCAAAAGAAATGGACT 57.204 34.783 0.00 0.00 39.55 3.85
4804 5493 5.776744 AGAATGTGCAAAAGAAATGGACTC 58.223 37.500 0.00 0.00 39.55 3.36
4805 5494 4.525912 ATGTGCAAAAGAAATGGACTCC 57.474 40.909 0.00 0.00 39.55 3.85
4806 5495 2.293122 TGTGCAAAAGAAATGGACTCCG 59.707 45.455 0.00 0.00 39.55 4.63
4807 5496 2.552315 GTGCAAAAGAAATGGACTCCGA 59.448 45.455 0.00 0.00 36.35 4.55
4808 5497 2.813754 TGCAAAAGAAATGGACTCCGAG 59.186 45.455 0.00 0.00 0.00 4.63
4809 5498 2.162408 GCAAAAGAAATGGACTCCGAGG 59.838 50.000 0.00 0.00 0.00 4.63
4810 5499 2.115343 AAAGAAATGGACTCCGAGGC 57.885 50.000 0.00 0.00 0.00 4.70
4811 5500 0.984230 AAGAAATGGACTCCGAGGCA 59.016 50.000 3.00 0.00 0.00 4.75
4812 5501 1.207791 AGAAATGGACTCCGAGGCAT 58.792 50.000 3.00 0.00 0.00 4.40
4813 5502 1.139853 AGAAATGGACTCCGAGGCATC 59.860 52.381 3.00 0.00 0.00 3.91
4814 5503 0.911769 AAATGGACTCCGAGGCATCA 59.088 50.000 3.00 0.00 0.00 3.07
4815 5504 0.911769 AATGGACTCCGAGGCATCAA 59.088 50.000 3.00 0.00 0.00 2.57
4816 5505 0.467384 ATGGACTCCGAGGCATCAAG 59.533 55.000 3.00 0.00 0.00 3.02
4817 5506 0.614697 TGGACTCCGAGGCATCAAGA 60.615 55.000 3.00 0.00 0.00 3.02
4818 5507 0.755686 GGACTCCGAGGCATCAAGAT 59.244 55.000 3.00 0.00 0.00 2.40
4819 5508 1.139853 GGACTCCGAGGCATCAAGATT 59.860 52.381 3.00 0.00 0.00 2.40
4820 5509 2.478831 GACTCCGAGGCATCAAGATTC 58.521 52.381 0.00 0.00 0.00 2.52
4821 5510 1.833630 ACTCCGAGGCATCAAGATTCA 59.166 47.619 0.00 0.00 0.00 2.57
4822 5511 2.237143 ACTCCGAGGCATCAAGATTCAA 59.763 45.455 0.00 0.00 0.00 2.69
4823 5512 3.118112 ACTCCGAGGCATCAAGATTCAAT 60.118 43.478 0.00 0.00 0.00 2.57
4824 5513 4.101585 ACTCCGAGGCATCAAGATTCAATA 59.898 41.667 0.00 0.00 0.00 1.90
4825 5514 5.221803 ACTCCGAGGCATCAAGATTCAATAT 60.222 40.000 0.00 0.00 0.00 1.28
4826 5515 6.014242 ACTCCGAGGCATCAAGATTCAATATA 60.014 38.462 0.00 0.00 0.00 0.86
4827 5516 6.166279 TCCGAGGCATCAAGATTCAATATAC 58.834 40.000 0.00 0.00 0.00 1.47
4828 5517 6.014242 TCCGAGGCATCAAGATTCAATATACT 60.014 38.462 0.00 0.00 0.00 2.12
4829 5518 7.178451 TCCGAGGCATCAAGATTCAATATACTA 59.822 37.037 0.00 0.00 0.00 1.82
4830 5519 7.819415 CCGAGGCATCAAGATTCAATATACTAA 59.181 37.037 0.00 0.00 0.00 2.24
4831 5520 9.376075 CGAGGCATCAAGATTCAATATACTAAT 57.624 33.333 0.00 0.00 0.00 1.73
4876 5565 8.940397 TTAGTATGAGATCCATGTGATGTAGA 57.060 34.615 6.87 0.00 36.71 2.59
4877 5566 7.846101 AGTATGAGATCCATGTGATGTAGAA 57.154 36.000 6.87 0.00 36.71 2.10
4878 5567 8.255111 AGTATGAGATCCATGTGATGTAGAAA 57.745 34.615 6.87 0.00 36.71 2.52
4879 5568 8.708378 AGTATGAGATCCATGTGATGTAGAAAA 58.292 33.333 6.87 0.00 36.71 2.29
4880 5569 9.499479 GTATGAGATCCATGTGATGTAGAAAAT 57.501 33.333 6.87 0.00 36.71 1.82
4881 5570 7.797038 TGAGATCCATGTGATGTAGAAAATG 57.203 36.000 1.91 0.00 32.41 2.32
4882 5571 7.341030 TGAGATCCATGTGATGTAGAAAATGT 58.659 34.615 1.91 0.00 32.41 2.71
4883 5572 8.485392 TGAGATCCATGTGATGTAGAAAATGTA 58.515 33.333 1.91 0.00 32.41 2.29
4884 5573 9.330063 GAGATCCATGTGATGTAGAAAATGTAA 57.670 33.333 1.91 0.00 32.41 2.41
4885 5574 9.685276 AGATCCATGTGATGTAGAAAATGTAAA 57.315 29.630 1.91 0.00 32.41 2.01
4910 5599 8.922058 ATTATGATTGTGTTTTCATCTTGAGC 57.078 30.769 0.00 0.00 34.52 4.26
4911 5600 5.125100 TGATTGTGTTTTCATCTTGAGCC 57.875 39.130 0.00 0.00 0.00 4.70
4912 5601 4.583907 TGATTGTGTTTTCATCTTGAGCCA 59.416 37.500 0.00 0.00 0.00 4.75
4913 5602 4.998671 TTGTGTTTTCATCTTGAGCCAA 57.001 36.364 0.00 0.00 0.00 4.52
4914 5603 4.572985 TGTGTTTTCATCTTGAGCCAAG 57.427 40.909 8.22 8.22 42.25 3.61
4915 5604 3.243501 TGTGTTTTCATCTTGAGCCAAGC 60.244 43.478 9.35 0.00 40.84 4.01
4916 5605 3.005155 GTGTTTTCATCTTGAGCCAAGCT 59.995 43.478 9.35 0.00 43.88 3.74
4917 5606 3.638160 TGTTTTCATCTTGAGCCAAGCTT 59.362 39.130 9.35 0.00 39.88 3.74
4918 5607 3.928727 TTTCATCTTGAGCCAAGCTTG 57.071 42.857 19.93 19.93 39.88 4.01
4919 5608 2.865119 TCATCTTGAGCCAAGCTTGA 57.135 45.000 28.05 6.10 39.88 3.02
4920 5609 3.144657 TCATCTTGAGCCAAGCTTGAA 57.855 42.857 28.05 12.66 39.88 2.69
4921 5610 3.693807 TCATCTTGAGCCAAGCTTGAAT 58.306 40.909 28.05 15.19 39.88 2.57
4922 5611 3.442625 TCATCTTGAGCCAAGCTTGAATG 59.557 43.478 28.05 12.24 39.88 2.67
4923 5612 2.867624 TCTTGAGCCAAGCTTGAATGT 58.132 42.857 28.05 8.68 39.88 2.71
4924 5613 2.816087 TCTTGAGCCAAGCTTGAATGTC 59.184 45.455 28.05 16.90 39.88 3.06
4925 5614 2.275134 TGAGCCAAGCTTGAATGTCA 57.725 45.000 28.05 19.06 39.88 3.58
4926 5615 2.156917 TGAGCCAAGCTTGAATGTCAG 58.843 47.619 28.05 10.00 39.88 3.51
4927 5616 0.886563 AGCCAAGCTTGAATGTCAGC 59.113 50.000 28.05 19.12 33.89 4.26
4928 5617 0.599558 GCCAAGCTTGAATGTCAGCA 59.400 50.000 28.05 0.00 0.00 4.41
4929 5618 1.203994 GCCAAGCTTGAATGTCAGCAT 59.796 47.619 28.05 0.00 36.80 3.79
4930 5619 2.734492 GCCAAGCTTGAATGTCAGCATC 60.734 50.000 28.05 0.00 33.50 3.91
4931 5620 2.490509 CCAAGCTTGAATGTCAGCATCA 59.509 45.455 28.05 0.00 33.50 3.07
4932 5621 3.057104 CCAAGCTTGAATGTCAGCATCAA 60.057 43.478 28.05 0.00 33.50 2.57
4933 5622 4.166523 CAAGCTTGAATGTCAGCATCAAG 58.833 43.478 22.31 16.04 39.88 3.02
4934 5623 2.527100 GCTTGAATGTCAGCATCAAGC 58.473 47.619 23.66 23.66 46.07 4.01
4947 5636 3.950078 GCATCAAGCTCAAGTAGAATGC 58.050 45.455 0.00 0.00 41.15 3.56
4948 5637 3.626670 GCATCAAGCTCAAGTAGAATGCT 59.373 43.478 0.00 0.00 41.15 3.79
4949 5638 4.260702 GCATCAAGCTCAAGTAGAATGCTC 60.261 45.833 0.00 0.00 41.15 4.26
4950 5639 4.541973 TCAAGCTCAAGTAGAATGCTCA 57.458 40.909 0.00 0.00 33.10 4.26
4951 5640 4.898320 TCAAGCTCAAGTAGAATGCTCAA 58.102 39.130 0.00 0.00 33.10 3.02
4952 5641 4.934001 TCAAGCTCAAGTAGAATGCTCAAG 59.066 41.667 0.00 0.00 33.10 3.02
4953 5642 3.871485 AGCTCAAGTAGAATGCTCAAGG 58.129 45.455 0.00 0.00 0.00 3.61
4954 5643 3.517100 AGCTCAAGTAGAATGCTCAAGGA 59.483 43.478 0.00 0.00 0.00 3.36
4955 5644 4.019860 AGCTCAAGTAGAATGCTCAAGGAA 60.020 41.667 0.00 0.00 0.00 3.36
4956 5645 4.697352 GCTCAAGTAGAATGCTCAAGGAAA 59.303 41.667 0.00 0.00 0.00 3.13
4957 5646 5.182001 GCTCAAGTAGAATGCTCAAGGAAAA 59.818 40.000 0.00 0.00 0.00 2.29
4958 5647 6.622462 GCTCAAGTAGAATGCTCAAGGAAAAG 60.622 42.308 0.00 0.00 0.00 2.27
4959 5648 5.707298 TCAAGTAGAATGCTCAAGGAAAAGG 59.293 40.000 0.00 0.00 0.00 3.11
4960 5649 5.248380 AGTAGAATGCTCAAGGAAAAGGT 57.752 39.130 0.00 0.00 0.00 3.50
4961 5650 6.374417 AGTAGAATGCTCAAGGAAAAGGTA 57.626 37.500 0.00 0.00 0.00 3.08
4962 5651 6.963322 AGTAGAATGCTCAAGGAAAAGGTAT 58.037 36.000 0.00 0.00 0.00 2.73
4963 5652 8.090788 AGTAGAATGCTCAAGGAAAAGGTATA 57.909 34.615 0.00 0.00 0.00 1.47
4964 5653 7.988028 AGTAGAATGCTCAAGGAAAAGGTATAC 59.012 37.037 0.00 0.00 0.00 1.47
4965 5654 6.721318 AGAATGCTCAAGGAAAAGGTATACA 58.279 36.000 5.01 0.00 0.00 2.29
4966 5655 7.349598 AGAATGCTCAAGGAAAAGGTATACAT 58.650 34.615 5.01 0.00 0.00 2.29
4967 5656 7.836183 AGAATGCTCAAGGAAAAGGTATACATT 59.164 33.333 5.01 0.13 0.00 2.71
4968 5657 7.961326 ATGCTCAAGGAAAAGGTATACATTT 57.039 32.000 9.62 9.62 0.00 2.32
4969 5658 7.156876 TGCTCAAGGAAAAGGTATACATTTG 57.843 36.000 15.63 4.64 29.66 2.32
4970 5659 6.036470 GCTCAAGGAAAAGGTATACATTTGC 58.964 40.000 15.63 13.67 29.66 3.68
4971 5660 6.127619 GCTCAAGGAAAAGGTATACATTTGCT 60.128 38.462 18.06 17.19 36.46 3.91
4972 5661 7.067008 GCTCAAGGAAAAGGTATACATTTGCTA 59.933 37.037 18.06 8.34 34.25 3.49
4973 5662 8.506168 TCAAGGAAAAGGTATACATTTGCTAG 57.494 34.615 18.06 9.97 34.25 3.42
4974 5663 7.556275 TCAAGGAAAAGGTATACATTTGCTAGG 59.444 37.037 18.06 15.44 34.25 3.02
4975 5664 6.970191 AGGAAAAGGTATACATTTGCTAGGT 58.030 36.000 18.06 2.23 33.70 3.08
4976 5665 7.410991 AGGAAAAGGTATACATTTGCTAGGTT 58.589 34.615 18.06 1.57 33.70 3.50
4977 5666 7.893833 AGGAAAAGGTATACATTTGCTAGGTTT 59.106 33.333 18.06 0.91 33.70 3.27
4978 5667 8.528643 GGAAAAGGTATACATTTGCTAGGTTTT 58.471 33.333 18.06 0.26 29.66 2.43
4979 5668 9.569167 GAAAAGGTATACATTTGCTAGGTTTTC 57.431 33.333 15.63 3.56 29.66 2.29
4980 5669 8.879427 AAAGGTATACATTTGCTAGGTTTTCT 57.121 30.769 14.31 0.00 0.00 2.52
4981 5670 8.879427 AAGGTATACATTTGCTAGGTTTTCTT 57.121 30.769 5.01 0.00 0.00 2.52
4982 5671 9.969001 AAGGTATACATTTGCTAGGTTTTCTTA 57.031 29.630 5.01 0.00 0.00 2.10
4983 5672 9.969001 AGGTATACATTTGCTAGGTTTTCTTAA 57.031 29.630 5.01 0.00 0.00 1.85
4989 5678 9.476202 ACATTTGCTAGGTTTTCTTAATTTCAC 57.524 29.630 0.00 0.00 0.00 3.18
4990 5679 8.925700 CATTTGCTAGGTTTTCTTAATTTCACC 58.074 33.333 0.00 0.00 0.00 4.02
4991 5680 6.249035 TGCTAGGTTTTCTTAATTTCACCG 57.751 37.500 0.00 0.00 0.00 4.94
4992 5681 5.998981 TGCTAGGTTTTCTTAATTTCACCGA 59.001 36.000 0.00 0.00 0.00 4.69
4993 5682 6.657541 TGCTAGGTTTTCTTAATTTCACCGAT 59.342 34.615 0.00 0.00 0.00 4.18
4994 5683 7.175990 TGCTAGGTTTTCTTAATTTCACCGATT 59.824 33.333 0.00 0.00 0.00 3.34
4995 5684 8.027189 GCTAGGTTTTCTTAATTTCACCGATTT 58.973 33.333 0.00 0.00 0.00 2.17
4996 5685 9.556030 CTAGGTTTTCTTAATTTCACCGATTTC 57.444 33.333 0.00 0.00 0.00 2.17
4997 5686 7.947282 AGGTTTTCTTAATTTCACCGATTTCA 58.053 30.769 0.00 0.00 0.00 2.69
4998 5687 8.417884 AGGTTTTCTTAATTTCACCGATTTCAA 58.582 29.630 0.00 0.00 0.00 2.69
4999 5688 8.699749 GGTTTTCTTAATTTCACCGATTTCAAG 58.300 33.333 0.00 0.00 0.00 3.02
5000 5689 8.699749 GTTTTCTTAATTTCACCGATTTCAAGG 58.300 33.333 0.00 0.00 0.00 3.61
5001 5690 7.519032 TTCTTAATTTCACCGATTTCAAGGT 57.481 32.000 0.00 0.00 42.34 3.50
5007 5696 1.247567 ACCGATTTCAAGGTGCTTGG 58.752 50.000 0.00 0.00 41.33 3.61
5008 5697 1.202879 ACCGATTTCAAGGTGCTTGGA 60.203 47.619 0.00 0.00 41.33 3.53
5009 5698 1.470098 CCGATTTCAAGGTGCTTGGAG 59.530 52.381 0.00 0.00 41.33 3.86
5010 5699 1.470098 CGATTTCAAGGTGCTTGGAGG 59.530 52.381 0.00 0.00 41.33 4.30
5011 5700 1.821136 GATTTCAAGGTGCTTGGAGGG 59.179 52.381 0.00 0.00 41.33 4.30
5012 5701 0.850100 TTTCAAGGTGCTTGGAGGGA 59.150 50.000 0.00 0.00 41.33 4.20
5013 5702 0.401738 TTCAAGGTGCTTGGAGGGAG 59.598 55.000 0.00 0.00 41.33 4.30
5014 5703 0.473694 TCAAGGTGCTTGGAGGGAGA 60.474 55.000 0.00 0.00 41.33 3.71
5015 5704 0.622665 CAAGGTGCTTGGAGGGAGAT 59.377 55.000 0.00 0.00 37.77 2.75
5016 5705 1.005215 CAAGGTGCTTGGAGGGAGATT 59.995 52.381 0.00 0.00 37.77 2.40
5017 5706 0.622665 AGGTGCTTGGAGGGAGATTG 59.377 55.000 0.00 0.00 0.00 2.67
5018 5707 0.394899 GGTGCTTGGAGGGAGATTGG 60.395 60.000 0.00 0.00 0.00 3.16
5019 5708 0.620556 GTGCTTGGAGGGAGATTGGA 59.379 55.000 0.00 0.00 0.00 3.53
5020 5709 1.213926 GTGCTTGGAGGGAGATTGGAT 59.786 52.381 0.00 0.00 0.00 3.41
5021 5710 1.925255 TGCTTGGAGGGAGATTGGATT 59.075 47.619 0.00 0.00 0.00 3.01
5022 5711 3.117888 GTGCTTGGAGGGAGATTGGATTA 60.118 47.826 0.00 0.00 0.00 1.75
5023 5712 3.723681 TGCTTGGAGGGAGATTGGATTAT 59.276 43.478 0.00 0.00 0.00 1.28
5024 5713 4.913355 TGCTTGGAGGGAGATTGGATTATA 59.087 41.667 0.00 0.00 0.00 0.98
5025 5714 5.013495 TGCTTGGAGGGAGATTGGATTATAG 59.987 44.000 0.00 0.00 0.00 1.31
5026 5715 5.572475 GCTTGGAGGGAGATTGGATTATAGG 60.572 48.000 0.00 0.00 0.00 2.57
5027 5716 5.106631 TGGAGGGAGATTGGATTATAGGT 57.893 43.478 0.00 0.00 0.00 3.08
5028 5717 5.486332 TGGAGGGAGATTGGATTATAGGTT 58.514 41.667 0.00 0.00 0.00 3.50
5029 5718 5.917087 TGGAGGGAGATTGGATTATAGGTTT 59.083 40.000 0.00 0.00 0.00 3.27
5030 5719 6.183361 TGGAGGGAGATTGGATTATAGGTTTG 60.183 42.308 0.00 0.00 0.00 2.93
5031 5720 6.044404 GGAGGGAGATTGGATTATAGGTTTGA 59.956 42.308 0.00 0.00 0.00 2.69
5032 5721 7.257199 GGAGGGAGATTGGATTATAGGTTTGAT 60.257 40.741 0.00 0.00 0.00 2.57
5033 5722 8.757307 AGGGAGATTGGATTATAGGTTTGATA 57.243 34.615 0.00 0.00 0.00 2.15
5034 5723 9.182642 AGGGAGATTGGATTATAGGTTTGATAA 57.817 33.333 0.00 0.00 0.00 1.75
5035 5724 9.232473 GGGAGATTGGATTATAGGTTTGATAAC 57.768 37.037 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.123830 GTGCGCGTGATAATTTAGTAGATTTT 58.876 34.615 8.43 0.00 0.00 1.82
16 17 3.170505 CACATTGTGCGCGTGATAATTT 58.829 40.909 8.43 0.00 32.23 1.82
75 76 1.075542 CGGCACAACGTACATCACAT 58.924 50.000 0.00 0.00 0.00 3.21
163 165 3.181443 ACGGTCCTCTTTTGTTCTCCATT 60.181 43.478 0.00 0.00 0.00 3.16
165 167 1.766496 ACGGTCCTCTTTTGTTCTCCA 59.234 47.619 0.00 0.00 0.00 3.86
169 171 2.249844 TCCACGGTCCTCTTTTGTTC 57.750 50.000 0.00 0.00 0.00 3.18
184 186 2.736192 CAACAAAAATTGGCCGATCCAC 59.264 45.455 5.76 0.00 46.55 4.02
186 188 1.731709 GCAACAAAAATTGGCCGATCC 59.268 47.619 5.76 0.00 34.12 3.36
192 194 0.235404 CGGCAGCAACAAAAATTGGC 59.765 50.000 0.00 0.00 34.12 4.52
206 208 1.061131 CGCTCAATCAAGTTACGGCAG 59.939 52.381 0.00 0.00 0.00 4.85
272 815 1.237954 TAGTGCGCGATGGCCAAAAA 61.238 50.000 10.96 0.00 35.02 1.94
273 816 1.029408 ATAGTGCGCGATGGCCAAAA 61.029 50.000 10.96 0.00 35.02 2.44
319 862 2.228582 TGCATGACAAAGGTGCATACAC 59.771 45.455 0.00 0.00 43.30 2.90
474 1020 1.203994 TGATTCCTTTCCTCGTCGGTC 59.796 52.381 0.00 0.00 0.00 4.79
475 1021 1.204941 CTGATTCCTTTCCTCGTCGGT 59.795 52.381 0.00 0.00 0.00 4.69
476 1022 1.927895 CTGATTCCTTTCCTCGTCGG 58.072 55.000 0.00 0.00 0.00 4.79
477 1023 1.281899 GCTGATTCCTTTCCTCGTCG 58.718 55.000 0.00 0.00 0.00 5.12
512 1060 2.440817 CGGAGGCCTATTTCGGGGT 61.441 63.158 4.42 0.00 0.00 4.95
535 1083 1.598962 CAGTGGTGGTGGTGAGCTG 60.599 63.158 0.00 0.00 0.00 4.24
587 1149 1.821216 GGCGAGGAAATCAAGTTGGA 58.179 50.000 2.34 0.00 0.00 3.53
634 1201 4.711949 AAGAGGTGGCTGCTGCGG 62.712 66.667 9.65 3.55 40.82 5.69
647 1214 2.094659 ATGCGACGCAACGGAAGAG 61.095 57.895 28.24 0.00 43.62 2.85
757 1332 1.819903 GAGTGTAGGTCACCTCACCTC 59.180 57.143 17.87 10.53 44.08 3.85
791 1387 1.291184 TGTTCGTTCAGGCGATGCAG 61.291 55.000 0.00 0.00 40.76 4.41
924 1534 2.356793 GGCTGGATCGATCGGCTG 60.357 66.667 28.25 17.69 0.00 4.85
925 1535 2.522923 AGGCTGGATCGATCGGCT 60.523 61.111 28.25 24.17 0.00 5.52
926 1536 2.048690 GAGGCTGGATCGATCGGC 60.049 66.667 24.43 24.43 0.00 5.54
927 1537 2.653702 GGAGGCTGGATCGATCGG 59.346 66.667 18.81 14.55 0.00 4.18
928 1538 1.872197 GAGGGAGGCTGGATCGATCG 61.872 65.000 18.81 9.36 0.00 3.69
1512 2135 3.203412 CCGTCGGACGAGGAGGAG 61.203 72.222 30.33 9.07 46.05 3.69
1561 2184 3.249189 TCCTGCTCCCGCTTTGGT 61.249 61.111 0.00 0.00 36.97 3.67
1777 2403 3.782443 GCCCGACCGGTTGAGGAT 61.782 66.667 24.20 0.00 34.73 3.24
2241 2876 1.295423 CACCTTGGTGACGTAGGGG 59.705 63.158 14.15 0.00 38.66 4.79
2607 3242 2.859273 CTTCCAGGTGCCGATCGCTT 62.859 60.000 10.32 0.00 38.78 4.68
2944 3583 0.679321 TATGTGCCTGCGCCATGAAA 60.679 50.000 4.18 0.00 31.16 2.69
3397 4046 1.473257 GGACGCAGCCAGATCATGTAA 60.473 52.381 0.00 0.00 0.00 2.41
3401 4050 0.463295 CTTGGACGCAGCCAGATCAT 60.463 55.000 0.00 0.00 39.52 2.45
3411 4060 2.904866 GTGCAACCCTTGGACGCA 60.905 61.111 0.00 0.00 42.06 5.24
3532 4182 2.669569 GCGAGCTTGCTGTTGGGA 60.670 61.111 19.25 0.00 0.00 4.37
3732 4386 8.442632 TGAGATTCAAAATGACATAGGCTTAG 57.557 34.615 0.00 0.00 0.00 2.18
3739 4393 7.568349 AGGTAGCTGAGATTCAAAATGACATA 58.432 34.615 0.00 0.00 0.00 2.29
3749 4403 4.040339 TGTTGTCAAGGTAGCTGAGATTCA 59.960 41.667 0.00 0.00 0.00 2.57
4052 4706 7.747799 CACAATCTAACTAGCAAAGTGTTCATG 59.252 37.037 0.00 0.00 38.88 3.07
4065 4719 7.819900 AGCAACTTTACTCCACAATCTAACTAG 59.180 37.037 0.00 0.00 0.00 2.57
4224 4878 7.816640 TGTCTGTCCAATCTTTTTGTATTAGC 58.183 34.615 0.00 0.00 0.00 3.09
4256 4910 0.961019 ACTCGGTGCCACGTTAGTTA 59.039 50.000 0.00 0.00 34.94 2.24
4257 4911 0.961019 TACTCGGTGCCACGTTAGTT 59.039 50.000 1.48 0.00 34.94 2.24
4258 4912 0.961019 TTACTCGGTGCCACGTTAGT 59.039 50.000 0.00 0.00 34.94 2.24
4282 4936 6.041409 AGGGTCTCACATGTTAGATGATGTAG 59.959 42.308 12.70 0.00 31.46 2.74
4292 4946 1.754803 CGGCTAGGGTCTCACATGTTA 59.245 52.381 0.00 0.00 0.00 2.41
4314 4968 1.228510 GCTGGAGAAATGGAGGGGG 59.771 63.158 0.00 0.00 0.00 5.40
4315 4969 0.182299 GAGCTGGAGAAATGGAGGGG 59.818 60.000 0.00 0.00 0.00 4.79
4321 4975 5.296283 CCATCTTTAGTGAGCTGGAGAAATG 59.704 44.000 0.00 0.00 35.44 2.32
4329 4983 7.432350 GGAAATATCCATCTTTAGTGAGCTG 57.568 40.000 0.00 0.00 45.79 4.24
4360 5015 7.726291 TGTTTTGAGTCAATAAAGGTCCCATTA 59.274 33.333 6.36 0.00 0.00 1.90
4386 5041 4.201950 GCTGTTGTTTTGCCTCGATATCAT 60.202 41.667 3.12 0.00 0.00 2.45
4388 5043 3.685058 GCTGTTGTTTTGCCTCGATATC 58.315 45.455 0.00 0.00 0.00 1.63
4389 5044 2.095853 CGCTGTTGTTTTGCCTCGATAT 59.904 45.455 0.00 0.00 0.00 1.63
4390 5045 1.463056 CGCTGTTGTTTTGCCTCGATA 59.537 47.619 0.00 0.00 0.00 2.92
4407 5062 1.605712 GCTGGTTGTGAACTCTACGCT 60.606 52.381 0.00 0.00 0.00 5.07
4426 5081 7.865875 CATATCTCGTTATATATGCAGAGGC 57.134 40.000 0.00 0.00 41.68 4.70
4443 5100 9.999009 CATGATATTTTGGTATGTGCATATCTC 57.001 33.333 0.00 0.00 0.00 2.75
4450 5107 6.418819 GTGAAGCATGATATTTTGGTATGTGC 59.581 38.462 0.00 0.00 0.00 4.57
4481 5138 4.514401 CTCCGGTACCTTAATTTGCTTCT 58.486 43.478 10.90 0.00 0.00 2.85
4482 5139 3.626217 CCTCCGGTACCTTAATTTGCTTC 59.374 47.826 10.90 0.00 0.00 3.86
4485 5142 3.271055 TCCTCCGGTACCTTAATTTGC 57.729 47.619 10.90 0.00 0.00 3.68
4486 5143 7.937394 AGATAAATCCTCCGGTACCTTAATTTG 59.063 37.037 10.90 0.00 0.00 2.32
4487 5144 7.937394 CAGATAAATCCTCCGGTACCTTAATTT 59.063 37.037 10.90 10.61 0.00 1.82
4490 5147 6.138263 TCAGATAAATCCTCCGGTACCTTAA 58.862 40.000 10.90 0.00 0.00 1.85
4499 5187 6.642707 AGTACTCTTCAGATAAATCCTCCG 57.357 41.667 0.00 0.00 0.00 4.63
4530 5218 9.674068 TGTTTACACACATATATGTATGTTGGT 57.326 29.630 29.30 14.87 45.29 3.67
4547 5235 5.417580 GGGAAGCAAAGGATATGTTTACACA 59.582 40.000 0.00 0.00 37.31 3.72
4549 5237 4.638421 CGGGAAGCAAAGGATATGTTTACA 59.362 41.667 0.00 0.00 0.00 2.41
4583 5271 4.884164 GGAGCTTCTTTTAGTGGCATGTAT 59.116 41.667 0.00 0.00 0.00 2.29
4592 5280 4.092116 AGCACAAGGAGCTTCTTTTAGT 57.908 40.909 3.86 0.00 39.87 2.24
4614 5302 2.158682 TGGTCTTTGCTTCAGTGGCTAA 60.159 45.455 0.00 0.00 0.00 3.09
4615 5303 1.419762 TGGTCTTTGCTTCAGTGGCTA 59.580 47.619 0.00 0.00 0.00 3.93
4616 5304 0.183492 TGGTCTTTGCTTCAGTGGCT 59.817 50.000 0.00 0.00 0.00 4.75
4620 5308 3.281727 TTCAGTGGTCTTTGCTTCAGT 57.718 42.857 0.00 0.00 0.00 3.41
4676 5365 8.182227 CATGCATCACATATGGAACATATCTTC 58.818 37.037 7.80 0.00 39.67 2.87
4677 5366 7.362660 GCATGCATCACATATGGAACATATCTT 60.363 37.037 14.21 0.00 39.67 2.40
4678 5367 6.095021 GCATGCATCACATATGGAACATATCT 59.905 38.462 14.21 0.00 39.67 1.98
4679 5368 6.127842 TGCATGCATCACATATGGAACATATC 60.128 38.462 18.46 6.44 39.67 1.63
4680 5369 5.712917 TGCATGCATCACATATGGAACATAT 59.287 36.000 18.46 0.00 39.67 1.78
4681 5370 5.071370 TGCATGCATCACATATGGAACATA 58.929 37.500 18.46 0.00 39.67 2.29
4682 5371 3.892588 TGCATGCATCACATATGGAACAT 59.107 39.130 18.46 7.27 39.67 2.71
4683 5372 3.288964 TGCATGCATCACATATGGAACA 58.711 40.909 18.46 5.46 39.50 3.18
4684 5373 3.566742 TCTGCATGCATCACATATGGAAC 59.433 43.478 22.97 0.28 36.64 3.62
4685 5374 3.566742 GTCTGCATGCATCACATATGGAA 59.433 43.478 22.97 0.00 36.64 3.53
4686 5375 3.143728 GTCTGCATGCATCACATATGGA 58.856 45.455 22.97 8.68 36.64 3.41
4687 5376 2.095919 CGTCTGCATGCATCACATATGG 60.096 50.000 22.97 6.12 36.64 2.74
4688 5377 2.803956 TCGTCTGCATGCATCACATATG 59.196 45.455 22.97 6.92 36.64 1.78
4689 5378 3.116079 TCGTCTGCATGCATCACATAT 57.884 42.857 22.97 0.00 36.64 1.78
4690 5379 2.600470 TCGTCTGCATGCATCACATA 57.400 45.000 22.97 9.05 36.64 2.29
4691 5380 1.963172 ATCGTCTGCATGCATCACAT 58.037 45.000 22.97 13.18 40.66 3.21
4692 5381 1.399089 CAATCGTCTGCATGCATCACA 59.601 47.619 22.97 11.63 0.00 3.58
4693 5382 1.268386 CCAATCGTCTGCATGCATCAC 60.268 52.381 22.97 19.06 0.00 3.06
4694 5383 1.018910 CCAATCGTCTGCATGCATCA 58.981 50.000 22.97 8.23 0.00 3.07
4695 5384 1.302366 TCCAATCGTCTGCATGCATC 58.698 50.000 22.97 16.05 0.00 3.91
4696 5385 1.607148 CATCCAATCGTCTGCATGCAT 59.393 47.619 22.97 2.13 0.00 3.96
4697 5386 1.018910 CATCCAATCGTCTGCATGCA 58.981 50.000 21.29 21.29 0.00 3.96
4698 5387 0.317603 GCATCCAATCGTCTGCATGC 60.318 55.000 11.82 11.82 34.77 4.06
4699 5388 1.018910 TGCATCCAATCGTCTGCATG 58.981 50.000 0.00 0.00 39.54 4.06
4700 5389 3.482147 TGCATCCAATCGTCTGCAT 57.518 47.368 0.00 0.00 39.54 3.96
4702 5391 2.456989 CAAATGCATCCAATCGTCTGC 58.543 47.619 0.00 0.00 35.21 4.26
4703 5392 2.684374 TCCAAATGCATCCAATCGTCTG 59.316 45.455 0.00 0.00 0.00 3.51
4704 5393 3.003394 TCCAAATGCATCCAATCGTCT 57.997 42.857 0.00 0.00 0.00 4.18
4705 5394 3.781079 TTCCAAATGCATCCAATCGTC 57.219 42.857 0.00 0.00 0.00 4.20
4706 5395 3.700539 TCATTCCAAATGCATCCAATCGT 59.299 39.130 0.00 0.00 0.00 3.73
4707 5396 4.310357 TCATTCCAAATGCATCCAATCG 57.690 40.909 0.00 0.00 0.00 3.34
4708 5397 6.539649 CATTCATTCCAAATGCATCCAATC 57.460 37.500 0.00 0.00 0.00 2.67
4717 5406 5.878116 ACTTTGATGGCATTCATTCCAAATG 59.122 36.000 0.00 3.86 35.97 2.32
4718 5407 6.057321 ACTTTGATGGCATTCATTCCAAAT 57.943 33.333 0.00 0.00 35.97 2.32
4719 5408 5.011840 TGACTTTGATGGCATTCATTCCAAA 59.988 36.000 0.00 5.56 35.97 3.28
4720 5409 4.527427 TGACTTTGATGGCATTCATTCCAA 59.473 37.500 0.00 0.00 35.97 3.53
4721 5410 4.087907 TGACTTTGATGGCATTCATTCCA 58.912 39.130 0.00 0.00 35.97 3.53
4722 5411 4.724074 TGACTTTGATGGCATTCATTCC 57.276 40.909 0.00 0.00 35.97 3.01
4723 5412 5.957798 TCTTGACTTTGATGGCATTCATTC 58.042 37.500 0.00 0.00 35.97 2.67
4724 5413 5.988310 TCTTGACTTTGATGGCATTCATT 57.012 34.783 0.00 0.00 35.97 2.57
4725 5414 5.655090 TGATCTTGACTTTGATGGCATTCAT 59.345 36.000 0.00 0.00 39.13 2.57
4726 5415 5.011586 TGATCTTGACTTTGATGGCATTCA 58.988 37.500 0.00 0.00 0.00 2.57
4727 5416 5.571784 TGATCTTGACTTTGATGGCATTC 57.428 39.130 0.00 0.00 0.00 2.67
4728 5417 6.540438 AATGATCTTGACTTTGATGGCATT 57.460 33.333 0.00 0.00 0.00 3.56
4729 5418 7.341256 ACTTAATGATCTTGACTTTGATGGCAT 59.659 33.333 0.00 0.00 0.00 4.40
4730 5419 6.660521 ACTTAATGATCTTGACTTTGATGGCA 59.339 34.615 0.00 0.00 0.00 4.92
4731 5420 7.093322 ACTTAATGATCTTGACTTTGATGGC 57.907 36.000 0.00 0.00 0.00 4.40
4775 5464 9.241919 TCCATTTCTTTTGCACATTCTAGATTA 57.758 29.630 0.00 0.00 0.00 1.75
4776 5465 8.031277 GTCCATTTCTTTTGCACATTCTAGATT 58.969 33.333 0.00 0.00 0.00 2.40
4777 5466 7.395489 AGTCCATTTCTTTTGCACATTCTAGAT 59.605 33.333 0.00 0.00 0.00 1.98
4778 5467 6.716628 AGTCCATTTCTTTTGCACATTCTAGA 59.283 34.615 0.00 0.00 0.00 2.43
4779 5468 6.917533 AGTCCATTTCTTTTGCACATTCTAG 58.082 36.000 0.00 0.00 0.00 2.43
4780 5469 6.071952 GGAGTCCATTTCTTTTGCACATTCTA 60.072 38.462 3.60 0.00 0.00 2.10
4781 5470 5.279156 GGAGTCCATTTCTTTTGCACATTCT 60.279 40.000 3.60 0.00 0.00 2.40
4782 5471 4.925646 GGAGTCCATTTCTTTTGCACATTC 59.074 41.667 3.60 0.00 0.00 2.67
4783 5472 4.559300 CGGAGTCCATTTCTTTTGCACATT 60.559 41.667 10.49 0.00 0.00 2.71
4784 5473 3.057315 CGGAGTCCATTTCTTTTGCACAT 60.057 43.478 10.49 0.00 0.00 3.21
4785 5474 2.293122 CGGAGTCCATTTCTTTTGCACA 59.707 45.455 10.49 0.00 0.00 4.57
4786 5475 2.552315 TCGGAGTCCATTTCTTTTGCAC 59.448 45.455 10.49 0.00 0.00 4.57
4787 5476 2.813754 CTCGGAGTCCATTTCTTTTGCA 59.186 45.455 10.49 0.00 0.00 4.08
4788 5477 2.162408 CCTCGGAGTCCATTTCTTTTGC 59.838 50.000 10.49 0.00 0.00 3.68
4789 5478 2.162408 GCCTCGGAGTCCATTTCTTTTG 59.838 50.000 10.49 0.00 0.00 2.44
4790 5479 2.224769 TGCCTCGGAGTCCATTTCTTTT 60.225 45.455 10.49 0.00 0.00 2.27
4791 5480 1.351017 TGCCTCGGAGTCCATTTCTTT 59.649 47.619 10.49 0.00 0.00 2.52
4792 5481 0.984230 TGCCTCGGAGTCCATTTCTT 59.016 50.000 10.49 0.00 0.00 2.52
4793 5482 1.139853 GATGCCTCGGAGTCCATTTCT 59.860 52.381 10.49 0.00 0.00 2.52
4794 5483 1.134401 TGATGCCTCGGAGTCCATTTC 60.134 52.381 10.49 0.00 0.00 2.17
4795 5484 0.911769 TGATGCCTCGGAGTCCATTT 59.088 50.000 10.49 0.00 0.00 2.32
4796 5485 0.911769 TTGATGCCTCGGAGTCCATT 59.088 50.000 10.49 0.00 0.00 3.16
4797 5486 0.467384 CTTGATGCCTCGGAGTCCAT 59.533 55.000 10.49 6.22 0.00 3.41
4798 5487 0.614697 TCTTGATGCCTCGGAGTCCA 60.615 55.000 10.49 1.30 0.00 4.02
4799 5488 0.755686 ATCTTGATGCCTCGGAGTCC 59.244 55.000 0.00 0.00 0.00 3.85
4800 5489 2.159043 TGAATCTTGATGCCTCGGAGTC 60.159 50.000 4.02 0.00 0.00 3.36
4801 5490 1.833630 TGAATCTTGATGCCTCGGAGT 59.166 47.619 4.02 0.00 0.00 3.85
4802 5491 2.609427 TGAATCTTGATGCCTCGGAG 57.391 50.000 0.00 0.00 0.00 4.63
4803 5492 3.565764 ATTGAATCTTGATGCCTCGGA 57.434 42.857 0.00 0.00 0.00 4.55
4804 5493 6.169094 AGTATATTGAATCTTGATGCCTCGG 58.831 40.000 0.00 0.00 0.00 4.63
4805 5494 8.763049 TTAGTATATTGAATCTTGATGCCTCG 57.237 34.615 0.00 0.00 0.00 4.63
4850 5539 9.539194 TCTACATCACATGGATCTCATACTAAT 57.461 33.333 0.00 0.00 32.57 1.73
4851 5540 8.940397 TCTACATCACATGGATCTCATACTAA 57.060 34.615 0.00 0.00 32.57 2.24
4852 5541 8.940397 TTCTACATCACATGGATCTCATACTA 57.060 34.615 0.00 0.00 32.57 1.82
4853 5542 7.846101 TTCTACATCACATGGATCTCATACT 57.154 36.000 0.00 0.00 32.57 2.12
4854 5543 8.893219 TTTTCTACATCACATGGATCTCATAC 57.107 34.615 0.00 0.00 32.57 2.39
4855 5544 9.498176 CATTTTCTACATCACATGGATCTCATA 57.502 33.333 0.00 0.00 32.57 2.15
4856 5545 7.997223 ACATTTTCTACATCACATGGATCTCAT 59.003 33.333 0.00 0.00 32.57 2.90
4857 5546 7.341030 ACATTTTCTACATCACATGGATCTCA 58.659 34.615 0.00 0.00 32.57 3.27
4858 5547 7.798596 ACATTTTCTACATCACATGGATCTC 57.201 36.000 0.00 0.00 32.57 2.75
4859 5548 9.685276 TTTACATTTTCTACATCACATGGATCT 57.315 29.630 0.00 0.00 32.57 2.75
4884 5573 9.362539 GCTCAAGATGAAAACACAATCATAATT 57.637 29.630 0.00 0.00 36.45 1.40
4885 5574 7.977853 GGCTCAAGATGAAAACACAATCATAAT 59.022 33.333 0.00 0.00 36.45 1.28
4886 5575 7.039853 TGGCTCAAGATGAAAACACAATCATAA 60.040 33.333 0.00 0.00 36.45 1.90
4887 5576 6.433716 TGGCTCAAGATGAAAACACAATCATA 59.566 34.615 0.00 0.00 36.45 2.15
4888 5577 5.244402 TGGCTCAAGATGAAAACACAATCAT 59.756 36.000 0.00 0.00 38.93 2.45
4889 5578 4.583907 TGGCTCAAGATGAAAACACAATCA 59.416 37.500 0.00 0.00 0.00 2.57
4890 5579 5.125100 TGGCTCAAGATGAAAACACAATC 57.875 39.130 0.00 0.00 0.00 2.67
4891 5580 5.534207 TTGGCTCAAGATGAAAACACAAT 57.466 34.783 0.00 0.00 0.00 2.71
4892 5581 4.737352 GCTTGGCTCAAGATGAAAACACAA 60.737 41.667 16.28 0.00 43.42 3.33
4893 5582 3.243501 GCTTGGCTCAAGATGAAAACACA 60.244 43.478 16.28 0.00 43.42 3.72
4894 5583 3.005155 AGCTTGGCTCAAGATGAAAACAC 59.995 43.478 16.28 0.00 43.42 3.32
4895 5584 3.225104 AGCTTGGCTCAAGATGAAAACA 58.775 40.909 16.28 0.00 43.42 2.83
4896 5585 3.930634 AGCTTGGCTCAAGATGAAAAC 57.069 42.857 16.28 0.62 43.42 2.43
4897 5586 3.890756 TCAAGCTTGGCTCAAGATGAAAA 59.109 39.130 25.73 0.00 43.42 2.29
4898 5587 3.489355 TCAAGCTTGGCTCAAGATGAAA 58.511 40.909 25.73 0.00 43.42 2.69
4899 5588 3.144657 TCAAGCTTGGCTCAAGATGAA 57.855 42.857 25.73 0.00 43.42 2.57
4900 5589 2.865119 TCAAGCTTGGCTCAAGATGA 57.135 45.000 25.73 15.07 43.42 2.92
4901 5590 3.192844 ACATTCAAGCTTGGCTCAAGATG 59.807 43.478 25.73 17.87 43.42 2.90
4902 5591 3.428532 ACATTCAAGCTTGGCTCAAGAT 58.571 40.909 25.73 9.00 43.42 2.40
4903 5592 2.816087 GACATTCAAGCTTGGCTCAAGA 59.184 45.455 25.73 1.89 43.42 3.02
4904 5593 2.555325 TGACATTCAAGCTTGGCTCAAG 59.445 45.455 25.73 12.39 43.57 3.02
4905 5594 2.555325 CTGACATTCAAGCTTGGCTCAA 59.445 45.455 25.73 13.23 38.25 3.02
4906 5595 2.156917 CTGACATTCAAGCTTGGCTCA 58.843 47.619 25.73 17.83 38.25 4.26
4907 5596 1.135460 GCTGACATTCAAGCTTGGCTC 60.135 52.381 25.73 14.63 38.25 4.70
4908 5597 0.886563 GCTGACATTCAAGCTTGGCT 59.113 50.000 25.73 10.94 42.56 4.75
4909 5598 0.599558 TGCTGACATTCAAGCTTGGC 59.400 50.000 25.73 18.59 0.00 4.52
4910 5599 2.490509 TGATGCTGACATTCAAGCTTGG 59.509 45.455 25.73 12.70 36.35 3.61
4911 5600 3.842732 TGATGCTGACATTCAAGCTTG 57.157 42.857 20.81 20.81 36.35 4.01
4912 5601 4.436242 CTTGATGCTGACATTCAAGCTT 57.564 40.909 0.00 0.00 36.35 3.74
4914 5603 2.527100 GCTTGATGCTGACATTCAAGC 58.473 47.619 21.89 21.89 46.97 4.01
4926 5615 3.626670 AGCATTCTACTTGAGCTTGATGC 59.373 43.478 0.00 0.00 43.29 3.91
4927 5616 4.874396 TGAGCATTCTACTTGAGCTTGATG 59.126 41.667 0.00 0.00 35.36 3.07
4928 5617 5.095145 TGAGCATTCTACTTGAGCTTGAT 57.905 39.130 0.00 0.00 35.36 2.57
4929 5618 4.541973 TGAGCATTCTACTTGAGCTTGA 57.458 40.909 0.00 0.00 35.36 3.02
4930 5619 4.094590 CCTTGAGCATTCTACTTGAGCTTG 59.905 45.833 0.00 0.00 35.36 4.01
4931 5620 4.019860 TCCTTGAGCATTCTACTTGAGCTT 60.020 41.667 0.00 0.00 35.36 3.74
4932 5621 3.517100 TCCTTGAGCATTCTACTTGAGCT 59.483 43.478 0.00 0.00 38.43 4.09
4933 5622 3.866651 TCCTTGAGCATTCTACTTGAGC 58.133 45.455 0.00 0.00 0.00 4.26
4934 5623 6.128063 CCTTTTCCTTGAGCATTCTACTTGAG 60.128 42.308 0.00 0.00 0.00 3.02
4935 5624 5.707298 CCTTTTCCTTGAGCATTCTACTTGA 59.293 40.000 0.00 0.00 0.00 3.02
4936 5625 5.474876 ACCTTTTCCTTGAGCATTCTACTTG 59.525 40.000 0.00 0.00 0.00 3.16
4937 5626 5.635120 ACCTTTTCCTTGAGCATTCTACTT 58.365 37.500 0.00 0.00 0.00 2.24
4938 5627 5.248380 ACCTTTTCCTTGAGCATTCTACT 57.752 39.130 0.00 0.00 0.00 2.57
4939 5628 7.769044 TGTATACCTTTTCCTTGAGCATTCTAC 59.231 37.037 0.00 0.00 0.00 2.59
4940 5629 7.857456 TGTATACCTTTTCCTTGAGCATTCTA 58.143 34.615 0.00 0.00 0.00 2.10
4941 5630 6.721318 TGTATACCTTTTCCTTGAGCATTCT 58.279 36.000 0.00 0.00 0.00 2.40
4942 5631 7.573968 ATGTATACCTTTTCCTTGAGCATTC 57.426 36.000 0.00 0.00 0.00 2.67
4943 5632 7.961326 AATGTATACCTTTTCCTTGAGCATT 57.039 32.000 0.00 0.00 0.00 3.56
4944 5633 7.631377 GCAAATGTATACCTTTTCCTTGAGCAT 60.631 37.037 3.65 0.00 0.00 3.79
4945 5634 6.350110 GCAAATGTATACCTTTTCCTTGAGCA 60.350 38.462 3.65 0.00 0.00 4.26
4946 5635 6.036470 GCAAATGTATACCTTTTCCTTGAGC 58.964 40.000 3.65 0.26 0.00 4.26
4947 5636 7.396540 AGCAAATGTATACCTTTTCCTTGAG 57.603 36.000 3.65 0.00 0.00 3.02
4948 5637 7.556275 CCTAGCAAATGTATACCTTTTCCTTGA 59.444 37.037 3.65 0.00 0.00 3.02
4949 5638 7.339466 ACCTAGCAAATGTATACCTTTTCCTTG 59.661 37.037 3.65 5.11 0.00 3.61
4950 5639 7.410991 ACCTAGCAAATGTATACCTTTTCCTT 58.589 34.615 3.65 0.00 0.00 3.36
4951 5640 6.970191 ACCTAGCAAATGTATACCTTTTCCT 58.030 36.000 3.65 6.23 0.00 3.36
4952 5641 7.640597 AACCTAGCAAATGTATACCTTTTCC 57.359 36.000 3.65 0.00 0.00 3.13
4953 5642 9.569167 GAAAACCTAGCAAATGTATACCTTTTC 57.431 33.333 3.65 0.11 0.00 2.29
4954 5643 9.309224 AGAAAACCTAGCAAATGTATACCTTTT 57.691 29.630 3.65 0.16 0.00 2.27
4955 5644 8.879427 AGAAAACCTAGCAAATGTATACCTTT 57.121 30.769 0.00 0.04 0.00 3.11
4956 5645 8.879427 AAGAAAACCTAGCAAATGTATACCTT 57.121 30.769 0.00 0.00 0.00 3.50
4957 5646 9.969001 TTAAGAAAACCTAGCAAATGTATACCT 57.031 29.630 0.00 0.00 0.00 3.08
4963 5652 9.476202 GTGAAATTAAGAAAACCTAGCAAATGT 57.524 29.630 0.00 0.00 0.00 2.71
4964 5653 8.925700 GGTGAAATTAAGAAAACCTAGCAAATG 58.074 33.333 0.00 0.00 0.00 2.32
4965 5654 7.812669 CGGTGAAATTAAGAAAACCTAGCAAAT 59.187 33.333 0.00 0.00 0.00 2.32
4966 5655 7.013464 TCGGTGAAATTAAGAAAACCTAGCAAA 59.987 33.333 0.00 0.00 0.00 3.68
4967 5656 6.487331 TCGGTGAAATTAAGAAAACCTAGCAA 59.513 34.615 0.00 0.00 0.00 3.91
4968 5657 5.998981 TCGGTGAAATTAAGAAAACCTAGCA 59.001 36.000 0.00 0.00 0.00 3.49
4969 5658 6.490566 TCGGTGAAATTAAGAAAACCTAGC 57.509 37.500 0.00 0.00 0.00 3.42
4970 5659 9.556030 GAAATCGGTGAAATTAAGAAAACCTAG 57.444 33.333 0.00 0.00 0.00 3.02
4971 5660 9.069082 TGAAATCGGTGAAATTAAGAAAACCTA 57.931 29.630 0.00 0.00 0.00 3.08
4972 5661 7.947282 TGAAATCGGTGAAATTAAGAAAACCT 58.053 30.769 0.00 0.00 0.00 3.50
4973 5662 8.582433 TTGAAATCGGTGAAATTAAGAAAACC 57.418 30.769 0.00 0.00 0.00 3.27
4974 5663 8.699749 CCTTGAAATCGGTGAAATTAAGAAAAC 58.300 33.333 0.00 0.00 0.00 2.43
4975 5664 8.417884 ACCTTGAAATCGGTGAAATTAAGAAAA 58.582 29.630 0.00 0.00 30.90 2.29
4976 5665 7.947282 ACCTTGAAATCGGTGAAATTAAGAAA 58.053 30.769 0.00 0.00 30.90 2.52
4977 5666 7.519032 ACCTTGAAATCGGTGAAATTAAGAA 57.481 32.000 0.00 0.00 30.90 2.52
4988 5677 1.202879 TCCAAGCACCTTGAAATCGGT 60.203 47.619 6.54 0.00 43.42 4.69
4989 5678 1.470098 CTCCAAGCACCTTGAAATCGG 59.530 52.381 6.54 0.00 43.42 4.18
4990 5679 1.470098 CCTCCAAGCACCTTGAAATCG 59.530 52.381 6.54 0.00 43.42 3.34
4991 5680 1.821136 CCCTCCAAGCACCTTGAAATC 59.179 52.381 6.54 0.00 43.42 2.17
4992 5681 1.428912 TCCCTCCAAGCACCTTGAAAT 59.571 47.619 6.54 0.00 43.42 2.17
4993 5682 0.850100 TCCCTCCAAGCACCTTGAAA 59.150 50.000 6.54 0.00 43.42 2.69
4994 5683 0.401738 CTCCCTCCAAGCACCTTGAA 59.598 55.000 6.54 0.00 43.42 2.69
4995 5684 0.473694 TCTCCCTCCAAGCACCTTGA 60.474 55.000 6.54 0.00 43.42 3.02
4996 5685 0.622665 ATCTCCCTCCAAGCACCTTG 59.377 55.000 0.00 0.00 40.75 3.61
4997 5686 1.005215 CAATCTCCCTCCAAGCACCTT 59.995 52.381 0.00 0.00 0.00 3.50
4998 5687 0.622665 CAATCTCCCTCCAAGCACCT 59.377 55.000 0.00 0.00 0.00 4.00
4999 5688 0.394899 CCAATCTCCCTCCAAGCACC 60.395 60.000 0.00 0.00 0.00 5.01
5000 5689 0.620556 TCCAATCTCCCTCCAAGCAC 59.379 55.000 0.00 0.00 0.00 4.40
5001 5690 1.600058 ATCCAATCTCCCTCCAAGCA 58.400 50.000 0.00 0.00 0.00 3.91
5002 5691 2.744352 AATCCAATCTCCCTCCAAGC 57.256 50.000 0.00 0.00 0.00 4.01
5003 5692 5.549619 ACCTATAATCCAATCTCCCTCCAAG 59.450 44.000 0.00 0.00 0.00 3.61
5004 5693 5.486332 ACCTATAATCCAATCTCCCTCCAA 58.514 41.667 0.00 0.00 0.00 3.53
5005 5694 5.106631 ACCTATAATCCAATCTCCCTCCA 57.893 43.478 0.00 0.00 0.00 3.86
5006 5695 6.044404 TCAAACCTATAATCCAATCTCCCTCC 59.956 42.308 0.00 0.00 0.00 4.30
5007 5696 7.079451 TCAAACCTATAATCCAATCTCCCTC 57.921 40.000 0.00 0.00 0.00 4.30
5008 5697 7.654287 ATCAAACCTATAATCCAATCTCCCT 57.346 36.000 0.00 0.00 0.00 4.20
5009 5698 9.232473 GTTATCAAACCTATAATCCAATCTCCC 57.768 37.037 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.