Multiple sequence alignment - TraesCS5A01G255500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G255500 chr5A 100.000 2687 0 0 1 2687 471464459 471461773 0.000000e+00 4963
1 TraesCS5A01G255500 chr5A 91.130 1319 77 20 339 1646 471511266 471512555 0.000000e+00 1751
2 TraesCS5A01G255500 chr5A 90.766 1267 65 26 387 1646 470667552 470668773 0.000000e+00 1644
3 TraesCS5A01G255500 chr5D 92.140 1603 79 13 348 1940 369076127 369077692 0.000000e+00 2218
4 TraesCS5A01G255500 chr5D 95.869 1041 39 1 606 1646 369061541 369060505 0.000000e+00 1681
5 TraesCS5A01G255500 chr5D 88.889 261 27 2 1904 2163 279293131 279292872 1.200000e-83 320
6 TraesCS5A01G255500 chr5D 88.462 260 28 2 1902 2161 269336242 269336499 2.010000e-81 313
7 TraesCS5A01G255500 chr5D 90.741 162 15 0 2168 2329 369058022 369057861 1.620000e-52 217
8 TraesCS5A01G255500 chr5B 91.476 1267 71 11 387 1644 437807232 437808470 0.000000e+00 1707
9 TraesCS5A01G255500 chr5B 90.527 1309 78 15 348 1646 437571790 437573062 0.000000e+00 1688
10 TraesCS5A01G255500 chr5B 89.932 1331 77 29 344 1646 437538357 437537056 0.000000e+00 1663
11 TraesCS5A01G255500 chr5B 90.165 1271 84 26 387 1646 437368297 437367057 0.000000e+00 1616
12 TraesCS5A01G255500 chr5B 94.600 1037 52 1 610 1646 437305583 437304551 0.000000e+00 1602
13 TraesCS5A01G255500 chr5B 87.679 349 29 9 2 340 437440853 437440509 6.970000e-106 394
14 TraesCS5A01G255500 chr5B 87.429 350 28 10 2 341 437518286 437517943 3.240000e-104 388
15 TraesCS5A01G255500 chr5B 87.143 350 30 9 2 341 437345514 437345170 1.510000e-102 383
16 TraesCS5A01G255500 chr5B 88.929 280 19 9 2 270 437553941 437553663 4.290000e-88 335
17 TraesCS5A01G255500 chr5B 88.931 262 29 0 1902 2163 105688452 105688191 9.280000e-85 324
18 TraesCS5A01G255500 chr5B 88.000 275 21 9 2 264 437307934 437307660 5.580000e-82 315
19 TraesCS5A01G255500 chr5B 86.029 272 21 9 2 264 437370494 437370231 2.640000e-70 276
20 TraesCS5A01G255500 chr5B 91.026 78 6 1 264 341 437553416 437553340 1.320000e-18 104
21 TraesCS5A01G255500 chr7D 96.407 334 12 0 2354 2687 427848247 427848580 3.910000e-153 551
22 TraesCS5A01G255500 chr7D 95.808 334 13 1 2354 2687 147026819 147026487 3.040000e-149 538
23 TraesCS5A01G255500 chr7D 90.038 261 26 0 1903 2163 597671553 597671813 3.310000e-89 339
24 TraesCS5A01G255500 chr1A 96.407 334 12 0 2354 2687 58897873 58897540 3.910000e-153 551
25 TraesCS5A01G255500 chr7A 96.108 334 13 0 2354 2687 383950204 383950537 1.820000e-151 545
26 TraesCS5A01G255500 chr7A 95.821 335 14 0 2353 2687 144235390 144235724 2.350000e-150 542
27 TraesCS5A01G255500 chr7A 95.808 334 14 0 2354 2687 294331252 294331585 8.460000e-150 540
28 TraesCS5A01G255500 chr7A 95.808 334 14 0 2354 2687 441182437 441182104 8.460000e-150 540
29 TraesCS5A01G255500 chr2D 95.808 334 13 1 2354 2687 394259370 394259038 3.040000e-149 538
30 TraesCS5A01G255500 chr2D 88.846 260 29 0 1904 2163 558801359 558801618 1.200000e-83 320
31 TraesCS5A01G255500 chr2D 88.462 260 30 0 1904 2163 455942485 455942226 5.580000e-82 315
32 TraesCS5A01G255500 chr4A 95.015 341 17 0 2347 2687 533848658 533848318 1.090000e-148 536
33 TraesCS5A01G255500 chr1B 89.272 261 28 0 1903 2163 442201636 442201896 7.170000e-86 327
34 TraesCS5A01G255500 chr3D 88.302 265 27 3 1899 2163 305497148 305497408 5.580000e-82 315
35 TraesCS5A01G255500 chr6B 88.506 261 27 3 1904 2163 365632637 365632379 2.010000e-81 313


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G255500 chr5A 471461773 471464459 2686 True 4963.0 4963 100.0000 1 2687 1 chr5A.!!$R1 2686
1 TraesCS5A01G255500 chr5A 471511266 471512555 1289 False 1751.0 1751 91.1300 339 1646 1 chr5A.!!$F2 1307
2 TraesCS5A01G255500 chr5A 470667552 470668773 1221 False 1644.0 1644 90.7660 387 1646 1 chr5A.!!$F1 1259
3 TraesCS5A01G255500 chr5D 369076127 369077692 1565 False 2218.0 2218 92.1400 348 1940 1 chr5D.!!$F2 1592
4 TraesCS5A01G255500 chr5D 369057861 369061541 3680 True 949.0 1681 93.3050 606 2329 2 chr5D.!!$R2 1723
5 TraesCS5A01G255500 chr5B 437807232 437808470 1238 False 1707.0 1707 91.4760 387 1644 1 chr5B.!!$F2 1257
6 TraesCS5A01G255500 chr5B 437571790 437573062 1272 False 1688.0 1688 90.5270 348 1646 1 chr5B.!!$F1 1298
7 TraesCS5A01G255500 chr5B 437537056 437538357 1301 True 1663.0 1663 89.9320 344 1646 1 chr5B.!!$R5 1302
8 TraesCS5A01G255500 chr5B 437304551 437307934 3383 True 958.5 1602 91.3000 2 1646 2 chr5B.!!$R6 1644
9 TraesCS5A01G255500 chr5B 437367057 437370494 3437 True 946.0 1616 88.0970 2 1646 2 chr5B.!!$R7 1644
10 TraesCS5A01G255500 chr5B 437553340 437553941 601 True 219.5 335 89.9775 2 341 2 chr5B.!!$R8 339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 2472 0.107214 CTCTCCTCTCCTCTGCTCGT 60.107 60.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 6706 0.17899 GGCATATCTCCAACACCCCC 60.179 60.0 0.0 0.0 0.0 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.265196 TGTGGTTACTTTGAGATTCATGCTTT 59.735 34.615 0.00 0.00 0.00 3.51
69 79 9.907576 TTTCAAAATTTGTTAGCGTTACATTTG 57.092 25.926 5.56 0.00 30.18 2.32
77 87 5.688176 TGTTAGCGTTACATTTGCTTTTTCC 59.312 36.000 0.00 0.00 40.06 3.13
158 168 8.831715 AAAACGATCCAAAATAAGAGCATTTT 57.168 26.923 0.00 0.00 38.37 1.82
193 203 9.712359 CACATAATGAAAAGTGATGATACACAG 57.288 33.333 0.00 0.00 42.45 3.66
200 210 8.849168 TGAAAAGTGATGATACACAGTGAAATT 58.151 29.630 7.81 0.00 42.45 1.82
241 251 8.955061 AACATTCTGAAACGAGATAAATTGTG 57.045 30.769 0.00 0.00 0.00 3.33
291 559 2.667199 GGAACCACGGACGTTGGG 60.667 66.667 9.49 8.44 0.00 4.12
300 568 3.263941 GACGTTGGGTCCATGCAC 58.736 61.111 0.00 0.00 39.90 4.57
304 572 0.744414 CGTTGGGTCCATGCACTAGG 60.744 60.000 0.00 0.00 0.00 3.02
318 586 2.555199 CACTAGGTAATCTGTGCAGCC 58.445 52.381 0.00 0.00 0.00 4.85
321 589 1.819632 GGTAATCTGTGCAGCCCCG 60.820 63.158 0.00 0.00 0.00 5.73
327 595 1.522355 CTGTGCAGCCCCGTAGATG 60.522 63.158 0.00 0.00 0.00 2.90
384 2225 3.431415 ACCCATAGGCAGTTCCTTTTTC 58.569 45.455 0.00 0.00 44.75 2.29
392 2248 2.816672 GCAGTTCCTTTTTCCTCCTCTG 59.183 50.000 0.00 0.00 0.00 3.35
436 2296 1.519455 GATCCCGTTGCAGTCTCGG 60.519 63.158 12.45 12.45 43.30 4.63
437 2297 2.227089 GATCCCGTTGCAGTCTCGGT 62.227 60.000 16.16 3.82 42.30 4.69
439 2299 2.651361 CCGTTGCAGTCTCGGTCT 59.349 61.111 11.58 0.00 39.51 3.85
444 2310 4.500116 GCAGTCTCGGTCTCGCCC 62.500 72.222 0.00 0.00 36.13 6.13
445 2318 3.062466 CAGTCTCGGTCTCGCCCA 61.062 66.667 0.00 0.00 36.13 5.36
465 2340 4.988598 CCACGCAGCGGGTTGACT 62.989 66.667 21.15 0.00 0.00 3.41
479 2360 1.248785 TTGACTTCGAGTCCGGGGAG 61.249 60.000 0.00 0.00 44.44 4.30
556 2457 0.602562 CCATGCGATCCTCTCCTCTC 59.397 60.000 0.00 0.00 0.00 3.20
557 2458 0.602562 CATGCGATCCTCTCCTCTCC 59.397 60.000 0.00 0.00 0.00 3.71
558 2459 0.482446 ATGCGATCCTCTCCTCTCCT 59.518 55.000 0.00 0.00 0.00 3.69
559 2460 0.179004 TGCGATCCTCTCCTCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
560 2461 0.110486 GCGATCCTCTCCTCTCCTCT 59.890 60.000 0.00 0.00 0.00 3.69
561 2462 1.882352 GCGATCCTCTCCTCTCCTCTC 60.882 61.905 0.00 0.00 0.00 3.20
562 2463 1.271379 CGATCCTCTCCTCTCCTCTCC 60.271 61.905 0.00 0.00 0.00 3.71
563 2464 2.065799 GATCCTCTCCTCTCCTCTCCT 58.934 57.143 0.00 0.00 0.00 3.69
564 2465 1.518367 TCCTCTCCTCTCCTCTCCTC 58.482 60.000 0.00 0.00 0.00 3.71
565 2466 1.010793 TCCTCTCCTCTCCTCTCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
566 2467 1.143684 CCTCTCCTCTCCTCTCCTCTG 59.856 61.905 0.00 0.00 0.00 3.35
567 2468 0.550914 TCTCCTCTCCTCTCCTCTGC 59.449 60.000 0.00 0.00 0.00 4.26
568 2469 0.552848 CTCCTCTCCTCTCCTCTGCT 59.447 60.000 0.00 0.00 0.00 4.24
569 2470 0.550914 TCCTCTCCTCTCCTCTGCTC 59.449 60.000 0.00 0.00 0.00 4.26
570 2471 0.819259 CCTCTCCTCTCCTCTGCTCG 60.819 65.000 0.00 0.00 0.00 5.03
571 2472 0.107214 CTCTCCTCTCCTCTGCTCGT 60.107 60.000 0.00 0.00 0.00 4.18
572 2473 0.107410 TCTCCTCTCCTCTGCTCGTC 60.107 60.000 0.00 0.00 0.00 4.20
573 2474 0.107214 CTCCTCTCCTCTGCTCGTCT 60.107 60.000 0.00 0.00 0.00 4.18
574 2475 0.107410 TCCTCTCCTCTGCTCGTCTC 60.107 60.000 0.00 0.00 0.00 3.36
575 2476 1.101049 CCTCTCCTCTGCTCGTCTCC 61.101 65.000 0.00 0.00 0.00 3.71
586 2492 2.368875 TGCTCGTCTCCTTTCCTTTTCT 59.631 45.455 0.00 0.00 0.00 2.52
594 2500 2.802740 CTTTCCTTTTCTGCCGCGCC 62.803 60.000 0.00 0.00 0.00 6.53
651 2580 2.690778 GGCCATCAAGCGCGTCTTT 61.691 57.895 8.43 0.00 31.27 2.52
1128 3067 3.367743 AAGCACATGCACGGGCTG 61.368 61.111 11.75 9.54 45.16 4.85
1320 3259 1.153901 CTACGACGCCACGGTTGAT 60.154 57.895 0.00 0.00 37.61 2.57
1451 3390 1.640593 TTGTTCACCACCTGGCCAGA 61.641 55.000 34.91 10.54 39.32 3.86
1653 3693 0.876399 GGTTCGCCAACGTTACCAAT 59.124 50.000 11.47 0.00 41.50 3.16
1756 6112 8.439993 TGCAAGAACATAAAACTACAACTGTA 57.560 30.769 0.00 0.00 0.00 2.74
1788 6146 3.402628 CACTACTAAGTGTTGGCTGGT 57.597 47.619 0.00 0.00 46.76 4.00
1844 6202 0.327924 TGAACGATGGATTGGTGGCT 59.672 50.000 0.00 0.00 0.00 4.75
1845 6203 0.734889 GAACGATGGATTGGTGGCTG 59.265 55.000 0.00 0.00 0.00 4.85
1895 6253 0.413434 TCACCTGATCCCAGTCCTGA 59.587 55.000 0.00 0.00 38.74 3.86
1907 6265 5.394738 TCCCAGTCCTGATCGAATATACTT 58.605 41.667 0.00 0.00 0.00 2.24
1909 6267 5.478679 CCCAGTCCTGATCGAATATACTTCT 59.521 44.000 0.00 0.00 0.00 2.85
1929 6287 7.582352 ACTTCTTCCGTTTTTATTTACTCTGC 58.418 34.615 0.00 0.00 0.00 4.26
1946 6304 4.814147 CTCTGCACATTAGAGTTGACTGA 58.186 43.478 0.00 0.00 37.48 3.41
1947 6305 5.213891 TCTGCACATTAGAGTTGACTGAA 57.786 39.130 0.00 0.00 0.00 3.02
1948 6306 5.233225 TCTGCACATTAGAGTTGACTGAAG 58.767 41.667 0.00 0.00 0.00 3.02
1949 6307 4.960938 TGCACATTAGAGTTGACTGAAGT 58.039 39.130 0.00 0.00 0.00 3.01
1950 6308 4.991056 TGCACATTAGAGTTGACTGAAGTC 59.009 41.667 3.41 3.41 44.97 3.01
1951 6309 4.390297 GCACATTAGAGTTGACTGAAGTCC 59.610 45.833 7.96 0.00 44.15 3.85
1952 6310 5.541845 CACATTAGAGTTGACTGAAGTCCA 58.458 41.667 7.96 0.00 44.15 4.02
1953 6311 5.991606 CACATTAGAGTTGACTGAAGTCCAA 59.008 40.000 7.96 0.59 44.15 3.53
1954 6312 6.652481 CACATTAGAGTTGACTGAAGTCCAAT 59.348 38.462 7.96 0.00 44.15 3.16
1955 6313 6.876257 ACATTAGAGTTGACTGAAGTCCAATC 59.124 38.462 7.96 6.01 44.15 2.67
1956 6314 6.672266 TTAGAGTTGACTGAAGTCCAATCT 57.328 37.500 15.84 15.84 43.97 2.40
1957 6315 5.146010 AGAGTTGACTGAAGTCCAATCTC 57.854 43.478 8.27 9.54 39.78 2.75
1958 6316 4.590647 AGAGTTGACTGAAGTCCAATCTCA 59.409 41.667 8.27 0.00 39.78 3.27
1959 6317 5.248020 AGAGTTGACTGAAGTCCAATCTCAT 59.752 40.000 8.27 0.00 39.78 2.90
1960 6318 6.438741 AGAGTTGACTGAAGTCCAATCTCATA 59.561 38.462 8.27 0.00 39.78 2.15
1961 6319 7.009179 AGTTGACTGAAGTCCAATCTCATAA 57.991 36.000 7.96 0.00 44.15 1.90
1962 6320 7.453393 AGTTGACTGAAGTCCAATCTCATAAA 58.547 34.615 7.96 0.00 44.15 1.40
1963 6321 7.605691 AGTTGACTGAAGTCCAATCTCATAAAG 59.394 37.037 7.96 0.00 44.15 1.85
1964 6322 7.009179 TGACTGAAGTCCAATCTCATAAAGT 57.991 36.000 7.96 0.00 44.15 2.66
1965 6323 7.453393 TGACTGAAGTCCAATCTCATAAAGTT 58.547 34.615 7.96 0.00 44.15 2.66
1966 6324 7.939039 TGACTGAAGTCCAATCTCATAAAGTTT 59.061 33.333 7.96 0.00 44.15 2.66
1967 6325 8.103948 ACTGAAGTCCAATCTCATAAAGTTTG 57.896 34.615 0.00 0.00 35.36 2.93
1968 6326 7.939039 ACTGAAGTCCAATCTCATAAAGTTTGA 59.061 33.333 0.00 0.00 37.00 2.69
1969 6327 8.099364 TGAAGTCCAATCTCATAAAGTTTGAC 57.901 34.615 0.00 0.00 37.00 3.18
1970 6328 7.174946 TGAAGTCCAATCTCATAAAGTTTGACC 59.825 37.037 0.00 0.00 37.00 4.02
1971 6329 6.542821 AGTCCAATCTCATAAAGTTTGACCA 58.457 36.000 0.00 0.00 37.00 4.02
1972 6330 7.004086 AGTCCAATCTCATAAAGTTTGACCAA 58.996 34.615 0.00 0.00 37.00 3.67
1973 6331 7.175641 AGTCCAATCTCATAAAGTTTGACCAAG 59.824 37.037 0.00 0.00 37.00 3.61
1974 6332 7.004086 TCCAATCTCATAAAGTTTGACCAAGT 58.996 34.615 0.00 0.00 37.00 3.16
1975 6333 7.505585 TCCAATCTCATAAAGTTTGACCAAGTT 59.494 33.333 0.00 0.00 37.00 2.66
1976 6334 8.143835 CCAATCTCATAAAGTTTGACCAAGTTT 58.856 33.333 0.00 0.00 40.52 2.66
2127 6485 9.454859 AAATTTACCAAATTTGACTTTGACCAA 57.545 25.926 19.86 0.28 46.30 3.67
2128 6486 9.454859 AATTTACCAAATTTGACTTTGACCAAA 57.545 25.926 19.86 6.25 37.84 3.28
2141 6499 6.757897 CTTTGACCAAAGCTAATATGTGGA 57.242 37.500 9.25 0.00 40.94 4.02
2142 6500 6.509418 TTTGACCAAAGCTAATATGTGGAC 57.491 37.500 0.00 0.00 33.39 4.02
2143 6501 5.435686 TGACCAAAGCTAATATGTGGACT 57.564 39.130 0.00 0.00 33.39 3.85
2144 6502 6.553953 TGACCAAAGCTAATATGTGGACTA 57.446 37.500 0.00 0.00 33.39 2.59
2145 6503 6.953101 TGACCAAAGCTAATATGTGGACTAA 58.047 36.000 0.00 0.00 33.39 2.24
2146 6504 7.398829 TGACCAAAGCTAATATGTGGACTAAA 58.601 34.615 0.00 0.00 33.39 1.85
2147 6505 8.052748 TGACCAAAGCTAATATGTGGACTAAAT 58.947 33.333 0.00 0.00 33.39 1.40
2148 6506 8.451908 ACCAAAGCTAATATGTGGACTAAATC 57.548 34.615 0.00 0.00 33.39 2.17
2149 6507 8.052748 ACCAAAGCTAATATGTGGACTAAATCA 58.947 33.333 0.00 0.00 33.39 2.57
2150 6508 8.902806 CCAAAGCTAATATGTGGACTAAATCAA 58.097 33.333 0.00 0.00 0.00 2.57
2159 6517 9.799106 ATATGTGGACTAAATCAAAATAGAGGG 57.201 33.333 0.00 0.00 0.00 4.30
2160 6518 7.265599 TGTGGACTAAATCAAAATAGAGGGA 57.734 36.000 0.00 0.00 0.00 4.20
2161 6519 7.338710 TGTGGACTAAATCAAAATAGAGGGAG 58.661 38.462 0.00 0.00 0.00 4.30
2162 6520 7.037586 TGTGGACTAAATCAAAATAGAGGGAGT 60.038 37.037 0.00 0.00 0.00 3.85
2163 6521 7.281100 GTGGACTAAATCAAAATAGAGGGAGTG 59.719 40.741 0.00 0.00 0.00 3.51
2164 6522 6.261158 GGACTAAATCAAAATAGAGGGAGTGC 59.739 42.308 0.00 0.00 0.00 4.40
2165 6523 6.122964 ACTAAATCAAAATAGAGGGAGTGCC 58.877 40.000 0.00 0.00 0.00 5.01
2166 6524 4.870021 AATCAAAATAGAGGGAGTGCCT 57.130 40.909 1.18 1.18 0.00 4.75
2167 6525 4.870021 ATCAAAATAGAGGGAGTGCCTT 57.130 40.909 4.00 0.00 0.00 4.35
2168 6526 4.657814 TCAAAATAGAGGGAGTGCCTTT 57.342 40.909 4.00 0.73 0.00 3.11
2169 6527 4.998051 TCAAAATAGAGGGAGTGCCTTTT 58.002 39.130 4.00 0.00 0.00 2.27
2170 6528 4.766891 TCAAAATAGAGGGAGTGCCTTTTG 59.233 41.667 15.75 15.75 36.45 2.44
2171 6529 3.372440 AATAGAGGGAGTGCCTTTTGG 57.628 47.619 4.00 0.00 44.18 3.28
2193 6551 1.195900 TGAAAACTAACGCATCCGCAC 59.804 47.619 0.00 0.00 38.40 5.34
2205 6563 1.816863 ATCCGCACTTGACCACGAGT 61.817 55.000 0.00 0.00 40.99 4.18
2211 6569 0.962489 ACTTGACCACGAGTGAGAGG 59.038 55.000 4.59 0.00 39.09 3.69
2215 6573 0.609681 GACCACGAGTGAGAGGAGGT 60.610 60.000 4.59 0.00 0.00 3.85
2256 6614 1.929860 CTGTGGAGGACCCCATGCAT 61.930 60.000 0.00 0.00 38.66 3.96
2303 6661 2.357760 GGCCGCACGGACAAAGTA 60.358 61.111 14.43 0.00 44.50 2.24
2306 6664 1.296056 GCCGCACGGACAAAGTACAT 61.296 55.000 14.43 0.00 37.50 2.29
2309 6667 1.156736 GCACGGACAAAGTACATGCT 58.843 50.000 0.00 0.00 0.00 3.79
2332 6690 1.664873 GAAGATTACCTTCGGGGCAC 58.335 55.000 0.00 0.00 41.54 5.01
2333 6691 0.107848 AAGATTACCTTCGGGGCACG 60.108 55.000 0.68 0.68 46.11 5.34
2334 6692 2.124860 ATTACCTTCGGGGCACGC 60.125 61.111 3.08 0.00 43.86 5.34
2335 6693 2.862674 GATTACCTTCGGGGCACGCA 62.863 60.000 3.08 0.00 43.53 5.24
2336 6694 3.887335 TTACCTTCGGGGCACGCAC 62.887 63.158 3.08 0.00 43.53 5.34
2366 6724 3.421567 GGGGGTGTTGGAGATATGC 57.578 57.895 0.00 0.00 0.00 3.14
2367 6725 0.178990 GGGGGTGTTGGAGATATGCC 60.179 60.000 0.00 0.00 0.00 4.40
2368 6726 0.178990 GGGGTGTTGGAGATATGCCC 60.179 60.000 0.00 0.00 0.00 5.36
2369 6727 0.846693 GGGTGTTGGAGATATGCCCT 59.153 55.000 0.00 0.00 0.00 5.19
2370 6728 2.054799 GGGTGTTGGAGATATGCCCTA 58.945 52.381 0.00 0.00 0.00 3.53
2371 6729 2.039084 GGGTGTTGGAGATATGCCCTAG 59.961 54.545 0.00 0.00 0.00 3.02
2372 6730 2.972713 GGTGTTGGAGATATGCCCTAGA 59.027 50.000 0.00 0.00 0.00 2.43
2373 6731 3.007398 GGTGTTGGAGATATGCCCTAGAG 59.993 52.174 0.00 0.00 0.00 2.43
2374 6732 3.007398 GTGTTGGAGATATGCCCTAGAGG 59.993 52.174 0.00 0.00 39.47 3.69
2387 6745 4.897509 CCCTAGAGGCAATCATGTATGA 57.102 45.455 0.00 0.00 41.70 2.15
2389 6747 5.183969 CCCTAGAGGCAATCATGTATGATG 58.816 45.833 8.04 4.58 46.22 3.07
2390 6748 5.280368 CCCTAGAGGCAATCATGTATGATGT 60.280 44.000 8.04 0.00 46.22 3.06
2391 6749 6.236409 CCTAGAGGCAATCATGTATGATGTT 58.764 40.000 8.04 0.00 46.22 2.71
2392 6750 7.389232 CCTAGAGGCAATCATGTATGATGTTA 58.611 38.462 8.04 0.00 46.22 2.41
2393 6751 8.045507 CCTAGAGGCAATCATGTATGATGTTAT 58.954 37.037 8.04 0.00 46.22 1.89
2394 6752 9.445878 CTAGAGGCAATCATGTATGATGTTATT 57.554 33.333 8.04 0.00 46.22 1.40
2395 6753 8.701908 AGAGGCAATCATGTATGATGTTATTT 57.298 30.769 8.04 0.00 46.22 1.40
2396 6754 9.139734 AGAGGCAATCATGTATGATGTTATTTT 57.860 29.630 8.04 0.00 46.22 1.82
2397 6755 9.403110 GAGGCAATCATGTATGATGTTATTTTC 57.597 33.333 8.04 0.00 46.22 2.29
2398 6756 9.139734 AGGCAATCATGTATGATGTTATTTTCT 57.860 29.630 8.04 0.00 46.22 2.52
2439 6797 8.915057 AAGATAGTCCTTGGACATTATCAATG 57.085 34.615 20.36 0.00 44.48 2.82
2440 6798 8.267620 AGATAGTCCTTGGACATTATCAATGA 57.732 34.615 20.36 0.00 41.46 2.57
2441 6799 8.888419 AGATAGTCCTTGGACATTATCAATGAT 58.112 33.333 20.36 0.00 41.46 2.45
2442 6800 9.160496 GATAGTCCTTGGACATTATCAATGATC 57.840 37.037 20.36 0.00 41.46 2.92
2443 6801 7.146715 AGTCCTTGGACATTATCAATGATCT 57.853 36.000 20.36 0.00 41.46 2.75
2444 6802 6.996879 AGTCCTTGGACATTATCAATGATCTG 59.003 38.462 20.36 1.61 41.46 2.90
2445 6803 6.769822 GTCCTTGGACATTATCAATGATCTGT 59.230 38.462 14.34 5.05 41.46 3.41
2446 6804 7.933577 GTCCTTGGACATTATCAATGATCTGTA 59.066 37.037 14.34 0.00 41.46 2.74
2447 6805 8.663167 TCCTTGGACATTATCAATGATCTGTAT 58.337 33.333 0.00 0.00 41.46 2.29
2448 6806 8.944029 CCTTGGACATTATCAATGATCTGTATC 58.056 37.037 0.00 2.75 41.46 2.24
2449 6807 9.498176 CTTGGACATTATCAATGATCTGTATCA 57.502 33.333 0.00 5.02 46.01 2.15
2450 6808 9.498176 TTGGACATTATCAATGATCTGTATCAG 57.502 33.333 0.00 0.00 45.17 2.90
2451 6809 8.873144 TGGACATTATCAATGATCTGTATCAGA 58.127 33.333 0.00 1.92 45.17 3.27
2452 6810 9.716531 GGACATTATCAATGATCTGTATCAGAA 57.283 33.333 0.00 0.00 45.17 3.02
2458 6816 8.809159 ATCAATGATCTGTATCAGAAAGTACG 57.191 34.615 3.58 0.00 45.17 3.67
2459 6817 7.772166 TCAATGATCTGTATCAGAAAGTACGT 58.228 34.615 3.58 0.00 45.17 3.57
2460 6818 7.702348 TCAATGATCTGTATCAGAAAGTACGTG 59.298 37.037 0.00 0.00 45.17 4.49
2461 6819 6.753107 TGATCTGTATCAGAAAGTACGTGA 57.247 37.500 0.00 0.00 44.04 4.35
2462 6820 6.552629 TGATCTGTATCAGAAAGTACGTGAC 58.447 40.000 0.00 0.00 44.04 3.67
2463 6821 6.374613 TGATCTGTATCAGAAAGTACGTGACT 59.625 38.462 0.00 0.00 44.04 3.41
2464 6822 7.094334 TGATCTGTATCAGAAAGTACGTGACTT 60.094 37.037 0.00 1.28 44.04 3.01
2465 6823 7.219154 GATCTGTATCAGAAAGTACGTGACTTG 59.781 40.741 0.00 0.00 43.37 3.16
2473 6831 2.557317 AGTACGTGACTTGTTTGTGGG 58.443 47.619 0.00 0.00 33.13 4.61
2474 6832 2.168936 AGTACGTGACTTGTTTGTGGGA 59.831 45.455 0.00 0.00 33.13 4.37
2475 6833 1.375551 ACGTGACTTGTTTGTGGGAC 58.624 50.000 0.00 0.00 0.00 4.46
2476 6834 1.065709 ACGTGACTTGTTTGTGGGACT 60.066 47.619 0.00 0.00 0.00 3.85
2477 6835 2.168936 ACGTGACTTGTTTGTGGGACTA 59.831 45.455 0.00 0.00 0.00 2.59
2478 6836 3.181458 ACGTGACTTGTTTGTGGGACTAT 60.181 43.478 0.00 0.00 0.00 2.12
2479 6837 3.186409 CGTGACTTGTTTGTGGGACTATG 59.814 47.826 0.00 0.00 0.00 2.23
2480 6838 3.058224 GTGACTTGTTTGTGGGACTATGC 60.058 47.826 0.00 0.00 0.00 3.14
2481 6839 3.146066 GACTTGTTTGTGGGACTATGCA 58.854 45.455 0.00 0.00 0.00 3.96
2482 6840 3.758554 GACTTGTTTGTGGGACTATGCAT 59.241 43.478 3.79 3.79 0.00 3.96
2483 6841 4.151883 ACTTGTTTGTGGGACTATGCATT 58.848 39.130 3.54 0.00 0.00 3.56
2484 6842 5.321102 ACTTGTTTGTGGGACTATGCATTA 58.679 37.500 3.54 0.00 0.00 1.90
2485 6843 5.951747 ACTTGTTTGTGGGACTATGCATTAT 59.048 36.000 3.54 0.00 0.00 1.28
2486 6844 7.116075 ACTTGTTTGTGGGACTATGCATTATA 58.884 34.615 3.54 0.00 0.00 0.98
2487 6845 7.779798 ACTTGTTTGTGGGACTATGCATTATAT 59.220 33.333 3.54 0.00 0.00 0.86
2488 6846 7.509141 TGTTTGTGGGACTATGCATTATATG 57.491 36.000 3.54 0.00 0.00 1.78
2489 6847 7.286313 TGTTTGTGGGACTATGCATTATATGA 58.714 34.615 3.54 0.00 0.00 2.15
2490 6848 7.944000 TGTTTGTGGGACTATGCATTATATGAT 59.056 33.333 3.54 0.00 0.00 2.45
2491 6849 7.926674 TTGTGGGACTATGCATTATATGATG 57.073 36.000 3.54 3.14 0.00 3.07
2492 6850 7.256494 TGTGGGACTATGCATTATATGATGA 57.744 36.000 3.54 0.00 0.00 2.92
2493 6851 7.688343 TGTGGGACTATGCATTATATGATGAA 58.312 34.615 3.54 0.82 0.00 2.57
2494 6852 7.607607 TGTGGGACTATGCATTATATGATGAAC 59.392 37.037 3.54 0.00 0.00 3.18
2495 6853 6.818142 TGGGACTATGCATTATATGATGAACG 59.182 38.462 3.54 0.00 0.00 3.95
2496 6854 6.818644 GGGACTATGCATTATATGATGAACGT 59.181 38.462 3.54 2.35 0.00 3.99
2497 6855 7.010552 GGGACTATGCATTATATGATGAACGTC 59.989 40.741 3.54 10.33 0.00 4.34
2498 6856 7.010552 GGACTATGCATTATATGATGAACGTCC 59.989 40.741 16.68 16.68 31.32 4.79
2499 6857 7.615403 ACTATGCATTATATGATGAACGTCCT 58.385 34.615 3.54 0.00 0.00 3.85
2500 6858 8.749354 ACTATGCATTATATGATGAACGTCCTA 58.251 33.333 3.54 0.00 0.00 2.94
2501 6859 9.586435 CTATGCATTATATGATGAACGTCCTAA 57.414 33.333 3.54 0.00 0.00 2.69
2502 6860 8.846943 ATGCATTATATGATGAACGTCCTAAA 57.153 30.769 11.46 0.00 0.00 1.85
2503 6861 8.669946 TGCATTATATGATGAACGTCCTAAAA 57.330 30.769 11.46 0.00 0.00 1.52
2504 6862 8.773645 TGCATTATATGATGAACGTCCTAAAAG 58.226 33.333 11.46 0.00 0.00 2.27
2505 6863 8.230486 GCATTATATGATGAACGTCCTAAAAGG 58.770 37.037 11.46 0.00 36.46 3.11
2506 6864 9.273016 CATTATATGATGAACGTCCTAAAAGGT 57.727 33.333 1.22 0.00 36.53 3.50
2507 6865 8.882415 TTATATGATGAACGTCCTAAAAGGTC 57.118 34.615 0.00 0.00 36.53 3.85
2508 6866 3.934068 TGATGAACGTCCTAAAAGGTCC 58.066 45.455 0.00 0.00 36.53 4.46
2509 6867 2.845363 TGAACGTCCTAAAAGGTCCC 57.155 50.000 0.00 0.00 36.53 4.46
2510 6868 2.332117 TGAACGTCCTAAAAGGTCCCT 58.668 47.619 0.00 0.00 36.53 4.20
2511 6869 3.509442 TGAACGTCCTAAAAGGTCCCTA 58.491 45.455 0.00 0.00 36.53 3.53
2512 6870 3.512724 TGAACGTCCTAAAAGGTCCCTAG 59.487 47.826 0.00 0.00 36.53 3.02
2513 6871 3.181393 ACGTCCTAAAAGGTCCCTAGT 57.819 47.619 0.00 0.00 36.53 2.57
2514 6872 3.095332 ACGTCCTAAAAGGTCCCTAGTC 58.905 50.000 0.00 0.00 36.53 2.59
2515 6873 2.098770 CGTCCTAAAAGGTCCCTAGTCG 59.901 54.545 0.00 0.00 36.53 4.18
2516 6874 3.359950 GTCCTAAAAGGTCCCTAGTCGA 58.640 50.000 0.00 0.00 36.53 4.20
2517 6875 3.766051 GTCCTAAAAGGTCCCTAGTCGAA 59.234 47.826 0.00 0.00 36.53 3.71
2518 6876 4.221482 GTCCTAAAAGGTCCCTAGTCGAAA 59.779 45.833 0.00 0.00 36.53 3.46
2519 6877 4.465305 TCCTAAAAGGTCCCTAGTCGAAAG 59.535 45.833 0.00 0.00 36.53 2.62
2520 6878 3.697619 AAAAGGTCCCTAGTCGAAAGG 57.302 47.619 7.91 7.91 0.00 3.11
2526 6884 3.442996 CCTAGTCGAAAGGGCTGTG 57.557 57.895 7.11 0.00 0.00 3.66
2527 6885 0.608640 CCTAGTCGAAAGGGCTGTGT 59.391 55.000 7.11 0.00 0.00 3.72
2528 6886 1.673033 CCTAGTCGAAAGGGCTGTGTG 60.673 57.143 7.11 0.00 0.00 3.82
2529 6887 0.320374 TAGTCGAAAGGGCTGTGTGG 59.680 55.000 0.00 0.00 0.00 4.17
2530 6888 1.070786 GTCGAAAGGGCTGTGTGGA 59.929 57.895 0.00 0.00 0.00 4.02
2531 6889 1.070786 TCGAAAGGGCTGTGTGGAC 59.929 57.895 0.00 0.00 0.00 4.02
2532 6890 2.317609 CGAAAGGGCTGTGTGGACG 61.318 63.158 0.00 0.00 0.00 4.79
2533 6891 2.594592 AAAGGGCTGTGTGGACGC 60.595 61.111 0.00 0.00 0.00 5.19
2534 6892 4.988598 AAGGGCTGTGTGGACGCG 62.989 66.667 3.53 3.53 0.00 6.01
2551 6909 1.009449 CGCAGCCGACTAGACTAGC 60.009 63.158 9.52 2.09 36.29 3.42
2552 6910 1.715862 CGCAGCCGACTAGACTAGCA 61.716 60.000 9.52 0.00 36.29 3.49
2553 6911 0.671251 GCAGCCGACTAGACTAGCAT 59.329 55.000 9.52 0.00 0.00 3.79
2554 6912 1.880675 GCAGCCGACTAGACTAGCATA 59.119 52.381 9.52 0.00 0.00 3.14
2555 6913 2.490115 GCAGCCGACTAGACTAGCATAT 59.510 50.000 9.52 0.00 0.00 1.78
2556 6914 3.671971 GCAGCCGACTAGACTAGCATATG 60.672 52.174 9.52 0.00 0.00 1.78
2557 6915 3.753797 CAGCCGACTAGACTAGCATATGA 59.246 47.826 6.97 0.00 0.00 2.15
2558 6916 3.754323 AGCCGACTAGACTAGCATATGAC 59.246 47.826 6.97 0.00 0.00 3.06
2559 6917 3.502595 GCCGACTAGACTAGCATATGACA 59.497 47.826 6.97 0.00 0.00 3.58
2560 6918 4.614078 GCCGACTAGACTAGCATATGACAC 60.614 50.000 6.97 0.00 0.00 3.67
2561 6919 4.377533 CCGACTAGACTAGCATATGACACG 60.378 50.000 6.97 2.67 0.00 4.49
2562 6920 4.377533 CGACTAGACTAGCATATGACACGG 60.378 50.000 6.97 0.00 0.00 4.94
2563 6921 4.462133 ACTAGACTAGCATATGACACGGT 58.538 43.478 6.97 0.00 0.00 4.83
2564 6922 3.992260 AGACTAGCATATGACACGGTC 57.008 47.619 6.97 6.74 0.00 4.79
2565 6923 2.290916 AGACTAGCATATGACACGGTCG 59.709 50.000 6.97 0.00 34.95 4.79
2566 6924 2.289820 GACTAGCATATGACACGGTCGA 59.710 50.000 6.97 0.00 34.95 4.20
2567 6925 2.885266 ACTAGCATATGACACGGTCGAT 59.115 45.455 6.97 0.00 34.95 3.59
2568 6926 2.140065 AGCATATGACACGGTCGATG 57.860 50.000 6.97 11.23 34.95 3.84
2569 6927 1.139989 GCATATGACACGGTCGATGG 58.860 55.000 6.97 0.00 34.95 3.51
2570 6928 1.139989 CATATGACACGGTCGATGGC 58.860 55.000 0.00 0.00 34.95 4.40
2571 6929 1.040646 ATATGACACGGTCGATGGCT 58.959 50.000 0.00 0.00 34.95 4.75
2572 6930 0.821517 TATGACACGGTCGATGGCTT 59.178 50.000 0.00 0.00 34.95 4.35
2573 6931 0.740868 ATGACACGGTCGATGGCTTG 60.741 55.000 0.00 0.00 34.95 4.01
2574 6932 2.047274 ACACGGTCGATGGCTTGG 60.047 61.111 0.00 0.00 0.00 3.61
2575 6933 2.047274 CACGGTCGATGGCTTGGT 60.047 61.111 0.00 0.00 0.00 3.67
2576 6934 2.100631 CACGGTCGATGGCTTGGTC 61.101 63.158 0.00 0.00 0.00 4.02
2577 6935 2.283529 ACGGTCGATGGCTTGGTCT 61.284 57.895 0.00 0.00 0.00 3.85
2578 6936 1.519455 CGGTCGATGGCTTGGTCTC 60.519 63.158 0.00 0.00 0.00 3.36
2579 6937 1.596934 GGTCGATGGCTTGGTCTCA 59.403 57.895 0.00 0.00 0.00 3.27
2580 6938 0.741221 GGTCGATGGCTTGGTCTCAC 60.741 60.000 0.00 0.00 0.00 3.51
2581 6939 0.247736 GTCGATGGCTTGGTCTCACT 59.752 55.000 0.00 0.00 0.00 3.41
2582 6940 1.476891 GTCGATGGCTTGGTCTCACTA 59.523 52.381 0.00 0.00 0.00 2.74
2583 6941 1.751351 TCGATGGCTTGGTCTCACTAG 59.249 52.381 0.00 0.00 0.00 2.57
2584 6942 1.478510 CGATGGCTTGGTCTCACTAGT 59.521 52.381 0.00 0.00 0.00 2.57
2585 6943 2.480416 CGATGGCTTGGTCTCACTAGTC 60.480 54.545 0.00 0.00 0.00 2.59
2586 6944 2.009681 TGGCTTGGTCTCACTAGTCA 57.990 50.000 0.00 0.00 0.00 3.41
2587 6945 2.540383 TGGCTTGGTCTCACTAGTCAT 58.460 47.619 0.00 0.00 0.00 3.06
2588 6946 2.234661 TGGCTTGGTCTCACTAGTCATG 59.765 50.000 0.00 0.00 0.00 3.07
2589 6947 2.419297 GGCTTGGTCTCACTAGTCATGG 60.419 54.545 0.00 0.00 0.00 3.66
2590 6948 2.497675 GCTTGGTCTCACTAGTCATGGA 59.502 50.000 0.00 0.00 0.00 3.41
2591 6949 3.430098 GCTTGGTCTCACTAGTCATGGAG 60.430 52.174 0.00 0.00 0.00 3.86
2592 6950 2.103373 TGGTCTCACTAGTCATGGAGC 58.897 52.381 0.00 0.00 0.00 4.70
2593 6951 2.103373 GGTCTCACTAGTCATGGAGCA 58.897 52.381 0.00 0.00 0.00 4.26
2594 6952 2.697751 GGTCTCACTAGTCATGGAGCAT 59.302 50.000 0.00 0.00 0.00 3.79
2595 6953 3.133721 GGTCTCACTAGTCATGGAGCATT 59.866 47.826 0.00 0.00 0.00 3.56
2596 6954 4.118410 GTCTCACTAGTCATGGAGCATTG 58.882 47.826 0.00 0.00 0.00 2.82
2597 6955 3.133542 TCTCACTAGTCATGGAGCATTGG 59.866 47.826 0.00 0.00 0.00 3.16
2598 6956 3.106827 TCACTAGTCATGGAGCATTGGA 58.893 45.455 0.00 0.00 0.00 3.53
2599 6957 3.713248 TCACTAGTCATGGAGCATTGGAT 59.287 43.478 0.00 0.00 0.00 3.41
2600 6958 4.901250 TCACTAGTCATGGAGCATTGGATA 59.099 41.667 0.00 0.00 0.00 2.59
2601 6959 4.993584 CACTAGTCATGGAGCATTGGATAC 59.006 45.833 0.00 0.00 0.00 2.24
2602 6960 4.904251 ACTAGTCATGGAGCATTGGATACT 59.096 41.667 0.00 0.00 37.61 2.12
2603 6961 6.015095 CACTAGTCATGGAGCATTGGATACTA 60.015 42.308 0.00 0.00 37.61 1.82
2604 6962 5.894298 AGTCATGGAGCATTGGATACTAA 57.106 39.130 0.00 0.00 37.61 2.24
2605 6963 5.615289 AGTCATGGAGCATTGGATACTAAC 58.385 41.667 0.00 0.00 37.61 2.34
2606 6964 4.757149 GTCATGGAGCATTGGATACTAACC 59.243 45.833 0.00 0.00 37.61 2.85
2607 6965 3.469008 TGGAGCATTGGATACTAACCG 57.531 47.619 0.00 0.00 37.61 4.44
2608 6966 2.104111 TGGAGCATTGGATACTAACCGG 59.896 50.000 0.00 0.00 37.61 5.28
2609 6967 2.367567 GGAGCATTGGATACTAACCGGA 59.632 50.000 9.46 0.00 37.61 5.14
2610 6968 3.008049 GGAGCATTGGATACTAACCGGAT 59.992 47.826 9.46 0.00 37.61 4.18
2611 6969 4.222145 GGAGCATTGGATACTAACCGGATA 59.778 45.833 9.46 0.00 37.61 2.59
2612 6970 5.279809 GGAGCATTGGATACTAACCGGATAA 60.280 44.000 9.46 0.00 37.61 1.75
2613 6971 6.374417 AGCATTGGATACTAACCGGATAAT 57.626 37.500 9.46 0.00 37.61 1.28
2614 6972 7.364408 GGAGCATTGGATACTAACCGGATAATA 60.364 40.741 9.46 0.00 37.61 0.98
2615 6973 8.090788 AGCATTGGATACTAACCGGATAATAT 57.909 34.615 9.46 0.00 37.61 1.28
2616 6974 7.987458 AGCATTGGATACTAACCGGATAATATG 59.013 37.037 9.46 0.00 37.61 1.78
2617 6975 7.226720 GCATTGGATACTAACCGGATAATATGG 59.773 40.741 9.46 0.00 37.61 2.74
2618 6976 8.482943 CATTGGATACTAACCGGATAATATGGA 58.517 37.037 9.46 0.00 37.61 3.41
2619 6977 7.414222 TGGATACTAACCGGATAATATGGAC 57.586 40.000 9.46 0.00 37.61 4.02
2620 6978 7.186972 TGGATACTAACCGGATAATATGGACT 58.813 38.462 9.46 0.00 37.61 3.85
2621 6979 7.341256 TGGATACTAACCGGATAATATGGACTC 59.659 40.741 9.46 0.00 37.61 3.36
2622 6980 5.640189 ACTAACCGGATAATATGGACTCG 57.360 43.478 9.46 0.00 0.00 4.18
2623 6981 3.955650 AACCGGATAATATGGACTCGG 57.044 47.619 9.46 0.00 41.45 4.63
2624 6982 2.176889 ACCGGATAATATGGACTCGGG 58.823 52.381 9.46 0.00 40.19 5.14
2625 6983 2.225192 ACCGGATAATATGGACTCGGGA 60.225 50.000 9.46 0.00 40.19 5.14
2626 6984 2.427453 CCGGATAATATGGACTCGGGAG 59.573 54.545 0.00 0.00 31.68 4.30
2627 6985 2.427453 CGGATAATATGGACTCGGGAGG 59.573 54.545 0.00 0.00 0.00 4.30
2628 6986 3.709587 GGATAATATGGACTCGGGAGGA 58.290 50.000 0.00 0.00 0.00 3.71
2629 6987 4.290942 GGATAATATGGACTCGGGAGGAT 58.709 47.826 0.00 0.00 0.00 3.24
2630 6988 4.342665 GGATAATATGGACTCGGGAGGATC 59.657 50.000 0.00 0.00 0.00 3.36
2631 6989 3.551635 AATATGGACTCGGGAGGATCT 57.448 47.619 0.00 0.00 33.73 2.75
2632 6990 2.294449 TATGGACTCGGGAGGATCTG 57.706 55.000 0.00 0.00 33.73 2.90
2633 6991 0.470833 ATGGACTCGGGAGGATCTGG 60.471 60.000 0.00 0.00 33.73 3.86
2634 6992 1.075896 GGACTCGGGAGGATCTGGT 60.076 63.158 0.00 0.00 33.73 4.00
2635 6993 1.110518 GGACTCGGGAGGATCTGGTC 61.111 65.000 0.00 0.00 33.73 4.02
2636 6994 1.448922 GACTCGGGAGGATCTGGTCG 61.449 65.000 0.00 0.00 33.73 4.79
2637 6995 2.123854 TCGGGAGGATCTGGTCGG 60.124 66.667 0.00 0.00 33.73 4.79
2638 6996 2.123854 CGGGAGGATCTGGTCGGA 60.124 66.667 0.00 0.00 33.73 4.55
2639 6997 1.531840 CGGGAGGATCTGGTCGGAT 60.532 63.158 0.00 0.00 33.73 4.18
2640 6998 1.115930 CGGGAGGATCTGGTCGGATT 61.116 60.000 0.00 0.00 33.73 3.01
2641 6999 0.682292 GGGAGGATCTGGTCGGATTC 59.318 60.000 0.00 0.00 33.73 2.52
2642 7000 0.315568 GGAGGATCTGGTCGGATTCG 59.684 60.000 0.00 0.00 33.73 3.34
2643 7001 1.319541 GAGGATCTGGTCGGATTCGA 58.680 55.000 0.00 0.00 43.86 3.71
2669 7027 1.871676 TCGGATCCGAGTTGAGATACG 59.128 52.381 32.59 2.64 46.14 3.06
2670 7028 1.069159 CGGATCCGAGTTGAGATACGG 60.069 57.143 30.62 0.00 42.04 4.02
2671 7029 1.955080 GGATCCGAGTTGAGATACGGT 59.045 52.381 0.00 0.00 44.72 4.83
2672 7030 2.030981 GGATCCGAGTTGAGATACGGTC 60.031 54.545 0.00 0.00 44.72 4.79
2673 7031 1.386533 TCCGAGTTGAGATACGGTCC 58.613 55.000 0.00 0.00 44.72 4.46
2674 7032 0.029035 CCGAGTTGAGATACGGTCCG 59.971 60.000 10.48 10.48 40.42 4.79
2675 7033 1.012086 CGAGTTGAGATACGGTCCGA 58.988 55.000 20.51 1.60 0.00 4.55
2676 7034 1.003759 CGAGTTGAGATACGGTCCGAG 60.004 57.143 20.51 0.00 0.00 4.63
2677 7035 2.015587 GAGTTGAGATACGGTCCGAGT 58.984 52.381 20.51 5.48 0.00 4.18
2678 7036 2.015587 AGTTGAGATACGGTCCGAGTC 58.984 52.381 20.51 14.79 0.00 3.36
2679 7037 1.012086 TTGAGATACGGTCCGAGTCG 58.988 55.000 20.51 5.29 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.621596 GCATGAATCTCAAAGTAACCACAGAC 60.622 42.308 0.00 0.00 0.00 3.51
4 5 5.886960 AGCATGAATCTCAAAGTAACCAC 57.113 39.130 0.00 0.00 0.00 4.16
48 49 7.707774 AAGCAAATGTAACGCTAACAAATTT 57.292 28.000 0.00 0.00 34.11 1.82
56 57 5.472137 AGAGGAAAAAGCAAATGTAACGCTA 59.528 36.000 0.00 0.00 34.11 4.26
165 175 8.400947 GTGTATCATCACTTTTCATTATGTGCT 58.599 33.333 0.00 0.00 35.68 4.40
209 219 6.429791 TCTCGTTTCAGAATGTTTTGTTCA 57.570 33.333 0.00 0.00 37.40 3.18
291 559 4.122776 CACAGATTACCTAGTGCATGGAC 58.877 47.826 9.70 9.70 0.00 4.02
300 568 1.202698 GGGGCTGCACAGATTACCTAG 60.203 57.143 3.46 0.00 0.00 3.02
304 572 0.177141 TACGGGGCTGCACAGATTAC 59.823 55.000 9.50 0.00 0.00 1.89
318 586 1.409427 GGAGAGTGGTTCATCTACGGG 59.591 57.143 0.00 0.00 32.65 5.28
321 589 2.497675 TGCTGGAGAGTGGTTCATCTAC 59.502 50.000 0.00 0.00 0.00 2.59
327 595 1.609072 GGTTTTGCTGGAGAGTGGTTC 59.391 52.381 0.00 0.00 0.00 3.62
384 2225 1.118356 ATTCCTAGCCGCAGAGGAGG 61.118 60.000 12.43 0.00 42.80 4.30
458 2333 1.080025 CCCGGACTCGAAGTCAACC 60.080 63.158 0.73 0.00 46.79 3.77
465 2340 3.068691 CTGCTCCCCGGACTCGAA 61.069 66.667 0.73 0.00 39.00 3.71
506 2387 5.221461 CCGTATATATAGAGGTTGGGATGCC 60.221 48.000 0.00 0.00 0.00 4.40
556 2457 1.101049 GGAGACGAGCAGAGGAGAGG 61.101 65.000 0.00 0.00 0.00 3.69
557 2458 0.107214 AGGAGACGAGCAGAGGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
558 2459 0.329931 AAGGAGACGAGCAGAGGAGA 59.670 55.000 0.00 0.00 0.00 3.71
559 2460 1.134175 GAAAGGAGACGAGCAGAGGAG 59.866 57.143 0.00 0.00 0.00 3.69
560 2461 1.178276 GAAAGGAGACGAGCAGAGGA 58.822 55.000 0.00 0.00 0.00 3.71
561 2462 0.174617 GGAAAGGAGACGAGCAGAGG 59.825 60.000 0.00 0.00 0.00 3.69
562 2463 1.181786 AGGAAAGGAGACGAGCAGAG 58.818 55.000 0.00 0.00 0.00 3.35
563 2464 1.633774 AAGGAAAGGAGACGAGCAGA 58.366 50.000 0.00 0.00 0.00 4.26
564 2465 2.464157 AAAGGAAAGGAGACGAGCAG 57.536 50.000 0.00 0.00 0.00 4.24
565 2466 2.368875 AGAAAAGGAAAGGAGACGAGCA 59.631 45.455 0.00 0.00 0.00 4.26
566 2467 2.739379 CAGAAAAGGAAAGGAGACGAGC 59.261 50.000 0.00 0.00 0.00 5.03
567 2468 2.739379 GCAGAAAAGGAAAGGAGACGAG 59.261 50.000 0.00 0.00 0.00 4.18
568 2469 2.550208 GGCAGAAAAGGAAAGGAGACGA 60.550 50.000 0.00 0.00 0.00 4.20
569 2470 1.807142 GGCAGAAAAGGAAAGGAGACG 59.193 52.381 0.00 0.00 0.00 4.18
570 2471 1.807142 CGGCAGAAAAGGAAAGGAGAC 59.193 52.381 0.00 0.00 0.00 3.36
571 2472 1.882352 GCGGCAGAAAAGGAAAGGAGA 60.882 52.381 0.00 0.00 0.00 3.71
572 2473 0.523519 GCGGCAGAAAAGGAAAGGAG 59.476 55.000 0.00 0.00 0.00 3.69
573 2474 1.234615 CGCGGCAGAAAAGGAAAGGA 61.235 55.000 0.00 0.00 0.00 3.36
574 2475 1.210155 CGCGGCAGAAAAGGAAAGG 59.790 57.895 0.00 0.00 0.00 3.11
575 2476 1.442688 GCGCGGCAGAAAAGGAAAG 60.443 57.895 8.83 0.00 0.00 2.62
594 2500 0.528684 GGAGGTCGATGGAAGAAGCG 60.529 60.000 0.00 0.00 0.00 4.68
1320 3259 2.731571 GCAGCCGAGGGACCACATA 61.732 63.158 0.00 0.00 0.00 2.29
1451 3390 0.179134 GAGCGGCAATGACTCGTAGT 60.179 55.000 1.45 0.00 0.00 2.73
1653 3693 5.619625 TGTGATCAACGCAATACAAATCA 57.380 34.783 0.00 0.00 35.99 2.57
1716 6072 4.014569 TCTTGCAACAAGCTATACACCA 57.985 40.909 0.00 0.00 45.94 4.17
1717 6073 4.215399 TGTTCTTGCAACAAGCTATACACC 59.785 41.667 0.00 0.00 45.94 4.16
1756 6112 4.082354 CACTTAGTAGTGTTTAGGACGCCT 60.082 45.833 3.87 3.87 45.46 5.52
1844 6202 1.147473 CAGTCACGCTGTAACATGCA 58.853 50.000 0.00 0.00 40.27 3.96
1845 6203 0.443869 CCAGTCACGCTGTAACATGC 59.556 55.000 0.00 0.00 43.55 4.06
1864 6222 2.345760 CAGGTGACTTGCCCATGGC 61.346 63.158 6.09 2.35 45.38 4.40
1873 6231 1.203364 AGGACTGGGATCAGGTGACTT 60.203 52.381 0.00 0.00 44.99 3.01
1907 6265 6.483974 TGTGCAGAGTAAATAAAAACGGAAGA 59.516 34.615 0.00 0.00 0.00 2.87
1909 6267 6.621316 TGTGCAGAGTAAATAAAAACGGAA 57.379 33.333 0.00 0.00 0.00 4.30
1929 6287 5.541845 TGGACTTCAGTCAACTCTAATGTG 58.458 41.667 9.18 0.00 46.47 3.21
1940 6298 7.009179 ACTTTATGAGATTGGACTTCAGTCA 57.991 36.000 9.18 0.00 46.47 3.41
1941 6299 7.913674 AACTTTATGAGATTGGACTTCAGTC 57.086 36.000 0.00 0.00 44.04 3.51
1942 6300 7.939039 TCAAACTTTATGAGATTGGACTTCAGT 59.061 33.333 0.00 0.00 38.35 3.41
1943 6301 8.233190 GTCAAACTTTATGAGATTGGACTTCAG 58.767 37.037 0.00 0.00 38.35 3.02
1944 6302 7.174946 GGTCAAACTTTATGAGATTGGACTTCA 59.825 37.037 0.00 0.00 38.35 3.02
1945 6303 7.174946 TGGTCAAACTTTATGAGATTGGACTTC 59.825 37.037 0.00 0.00 38.35 3.01
1946 6304 7.004086 TGGTCAAACTTTATGAGATTGGACTT 58.996 34.615 0.00 0.00 38.35 3.01
1947 6305 6.542821 TGGTCAAACTTTATGAGATTGGACT 58.457 36.000 0.00 0.00 38.35 3.85
1948 6306 6.817765 TGGTCAAACTTTATGAGATTGGAC 57.182 37.500 0.00 0.00 38.35 4.02
1949 6307 7.004086 ACTTGGTCAAACTTTATGAGATTGGA 58.996 34.615 0.00 0.00 38.35 3.53
1950 6308 7.219484 ACTTGGTCAAACTTTATGAGATTGG 57.781 36.000 0.00 0.00 38.35 3.16
2099 6457 9.715123 GGTCAAAGTCAAATTTGGTAAATTTTG 57.285 29.630 17.90 15.73 46.01 2.44
2100 6458 9.454859 TGGTCAAAGTCAAATTTGGTAAATTTT 57.545 25.926 17.90 5.48 46.01 1.82
2102 6460 9.454859 TTTGGTCAAAGTCAAATTTGGTAAATT 57.545 25.926 17.90 2.02 42.62 1.82
2103 6461 9.108284 CTTTGGTCAAAGTCAAATTTGGTAAAT 57.892 29.630 17.90 0.00 42.02 1.40
2104 6462 8.485976 CTTTGGTCAAAGTCAAATTTGGTAAA 57.514 30.769 17.90 0.00 42.02 2.01
2119 6477 6.245408 AGTCCACATATTAGCTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
2120 6478 5.815581 AGTCCACATATTAGCTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
2121 6479 5.435686 AGTCCACATATTAGCTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
2122 6480 7.859325 TTTAGTCCACATATTAGCTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
2123 6481 8.052748 TGATTTAGTCCACATATTAGCTTTGGT 58.947 33.333 0.00 0.00 0.00 3.67
2124 6482 8.450578 TGATTTAGTCCACATATTAGCTTTGG 57.549 34.615 0.00 0.00 0.00 3.28
2133 6491 9.799106 CCCTCTATTTTGATTTAGTCCACATAT 57.201 33.333 0.00 0.00 0.00 1.78
2134 6492 8.998814 TCCCTCTATTTTGATTTAGTCCACATA 58.001 33.333 0.00 0.00 0.00 2.29
2135 6493 7.872138 TCCCTCTATTTTGATTTAGTCCACAT 58.128 34.615 0.00 0.00 0.00 3.21
2136 6494 7.037586 ACTCCCTCTATTTTGATTTAGTCCACA 60.038 37.037 0.00 0.00 0.00 4.17
2137 6495 7.281100 CACTCCCTCTATTTTGATTTAGTCCAC 59.719 40.741 0.00 0.00 0.00 4.02
2138 6496 7.338710 CACTCCCTCTATTTTGATTTAGTCCA 58.661 38.462 0.00 0.00 0.00 4.02
2139 6497 6.261158 GCACTCCCTCTATTTTGATTTAGTCC 59.739 42.308 0.00 0.00 0.00 3.85
2140 6498 6.261158 GGCACTCCCTCTATTTTGATTTAGTC 59.739 42.308 0.00 0.00 0.00 2.59
2141 6499 6.069381 AGGCACTCCCTCTATTTTGATTTAGT 60.069 38.462 0.00 0.00 41.21 2.24
2142 6500 6.360618 AGGCACTCCCTCTATTTTGATTTAG 58.639 40.000 0.00 0.00 41.21 1.85
2143 6501 6.327386 AGGCACTCCCTCTATTTTGATTTA 57.673 37.500 0.00 0.00 41.21 1.40
2144 6502 5.198602 AGGCACTCCCTCTATTTTGATTT 57.801 39.130 0.00 0.00 41.21 2.17
2145 6503 4.870021 AGGCACTCCCTCTATTTTGATT 57.130 40.909 0.00 0.00 41.21 2.57
2146 6504 4.870021 AAGGCACTCCCTCTATTTTGAT 57.130 40.909 0.00 0.00 45.62 2.57
2147 6505 4.657814 AAAGGCACTCCCTCTATTTTGA 57.342 40.909 0.00 0.00 45.62 2.69
2148 6506 4.082026 CCAAAAGGCACTCCCTCTATTTTG 60.082 45.833 0.00 0.00 45.62 2.44
2149 6507 4.089361 CCAAAAGGCACTCCCTCTATTTT 58.911 43.478 0.00 0.00 45.62 1.82
2150 6508 3.701664 CCAAAAGGCACTCCCTCTATTT 58.298 45.455 0.00 0.00 45.62 1.40
2151 6509 2.621668 GCCAAAAGGCACTCCCTCTATT 60.622 50.000 0.84 0.00 45.62 1.73
2152 6510 1.064389 GCCAAAAGGCACTCCCTCTAT 60.064 52.381 0.84 0.00 45.62 1.98
2153 6511 0.328258 GCCAAAAGGCACTCCCTCTA 59.672 55.000 0.84 0.00 45.62 2.43
2154 6512 1.075659 GCCAAAAGGCACTCCCTCT 59.924 57.895 0.84 0.00 45.62 3.69
2155 6513 1.075659 AGCCAAAAGGCACTCCCTC 59.924 57.895 9.42 0.00 45.62 4.30
2157 6515 0.827507 TTCAGCCAAAAGGCACTCCC 60.828 55.000 9.42 0.00 38.49 4.30
2158 6516 1.039856 TTTCAGCCAAAAGGCACTCC 58.960 50.000 9.42 0.00 38.49 3.85
2159 6517 2.101415 AGTTTTCAGCCAAAAGGCACTC 59.899 45.455 9.42 0.00 38.49 3.51
2161 6519 2.602257 AGTTTTCAGCCAAAAGGCAC 57.398 45.000 9.42 0.00 34.49 5.01
2162 6520 3.490078 CGTTAGTTTTCAGCCAAAAGGCA 60.490 43.478 9.42 0.00 34.49 4.75
2163 6521 3.049912 CGTTAGTTTTCAGCCAAAAGGC 58.950 45.455 0.00 0.00 34.49 4.35
2164 6522 3.049912 GCGTTAGTTTTCAGCCAAAAGG 58.950 45.455 0.00 0.00 34.49 3.11
2165 6523 3.701241 TGCGTTAGTTTTCAGCCAAAAG 58.299 40.909 0.00 0.00 34.49 2.27
2166 6524 3.784701 TGCGTTAGTTTTCAGCCAAAA 57.215 38.095 0.00 0.00 0.00 2.44
2167 6525 3.305064 GGATGCGTTAGTTTTCAGCCAAA 60.305 43.478 0.00 0.00 35.28 3.28
2168 6526 2.227865 GGATGCGTTAGTTTTCAGCCAA 59.772 45.455 0.00 0.00 35.28 4.52
2169 6527 1.810151 GGATGCGTTAGTTTTCAGCCA 59.190 47.619 0.00 0.00 35.28 4.75
2170 6528 1.202031 CGGATGCGTTAGTTTTCAGCC 60.202 52.381 0.00 0.00 0.00 4.85
2171 6529 1.790481 GCGGATGCGTTAGTTTTCAGC 60.790 52.381 8.84 0.00 0.00 4.26
2193 6551 1.201181 CTCCTCTCACTCGTGGTCAAG 59.799 57.143 0.00 0.00 0.00 3.02
2205 6563 1.403814 CGATAAGGCACCTCCTCTCA 58.596 55.000 0.00 0.00 46.94 3.27
2256 6614 0.884259 CTGTCGGGACATGCAACACA 60.884 55.000 1.41 0.00 41.01 3.72
2303 6661 4.396166 CGAAGGTAATCTTCCAAAGCATGT 59.604 41.667 0.00 0.00 46.93 3.21
2306 6664 3.343617 CCGAAGGTAATCTTCCAAAGCA 58.656 45.455 0.00 0.00 46.93 3.91
2348 6706 0.178990 GGCATATCTCCAACACCCCC 60.179 60.000 0.00 0.00 0.00 5.40
2349 6707 0.178990 GGGCATATCTCCAACACCCC 60.179 60.000 0.00 0.00 0.00 4.95
2350 6708 0.846693 AGGGCATATCTCCAACACCC 59.153 55.000 0.00 0.00 36.04 4.61
2351 6709 2.972713 TCTAGGGCATATCTCCAACACC 59.027 50.000 0.00 0.00 0.00 4.16
2352 6710 3.007398 CCTCTAGGGCATATCTCCAACAC 59.993 52.174 0.00 0.00 0.00 3.32
2353 6711 3.242867 CCTCTAGGGCATATCTCCAACA 58.757 50.000 0.00 0.00 0.00 3.33
2354 6712 3.971245 CCTCTAGGGCATATCTCCAAC 57.029 52.381 0.00 0.00 0.00 3.77
2366 6724 4.897509 TCATACATGATTGCCTCTAGGG 57.102 45.455 0.00 0.00 35.18 3.53
2367 6725 5.802465 ACATCATACATGATTGCCTCTAGG 58.198 41.667 0.00 0.00 44.70 3.02
2368 6726 9.445878 AATAACATCATACATGATTGCCTCTAG 57.554 33.333 0.00 0.00 44.70 2.43
2369 6727 9.797642 AAATAACATCATACATGATTGCCTCTA 57.202 29.630 0.00 0.00 44.70 2.43
2370 6728 8.701908 AAATAACATCATACATGATTGCCTCT 57.298 30.769 0.00 0.00 44.70 3.69
2371 6729 9.403110 GAAAATAACATCATACATGATTGCCTC 57.597 33.333 0.00 0.00 44.70 4.70
2372 6730 9.139734 AGAAAATAACATCATACATGATTGCCT 57.860 29.630 0.00 0.00 44.70 4.75
2413 6771 9.347240 CATTGATAATGTCCAAGGACTATCTTT 57.653 33.333 19.20 8.56 44.80 2.52
2414 6772 8.717717 TCATTGATAATGTCCAAGGACTATCTT 58.282 33.333 19.20 10.29 44.80 2.40
2415 6773 8.267620 TCATTGATAATGTCCAAGGACTATCT 57.732 34.615 19.20 3.24 44.80 1.98
2416 6774 9.160496 GATCATTGATAATGTCCAAGGACTATC 57.840 37.037 19.20 17.35 44.80 2.08
2417 6775 8.888419 AGATCATTGATAATGTCCAAGGACTAT 58.112 33.333 19.20 10.13 44.80 2.12
2418 6776 8.152898 CAGATCATTGATAATGTCCAAGGACTA 58.847 37.037 19.20 5.83 44.80 2.59
2419 6777 6.996879 CAGATCATTGATAATGTCCAAGGACT 59.003 38.462 19.20 3.73 44.80 3.85
2420 6778 6.769822 ACAGATCATTGATAATGTCCAAGGAC 59.230 38.462 12.30 12.30 44.77 3.85
2421 6779 6.903516 ACAGATCATTGATAATGTCCAAGGA 58.096 36.000 9.94 0.00 39.87 3.36
2422 6780 8.859236 ATACAGATCATTGATAATGTCCAAGG 57.141 34.615 16.28 0.00 39.87 3.61
2423 6781 9.498176 TGATACAGATCATTGATAATGTCCAAG 57.502 33.333 16.28 0.00 37.15 3.61
2424 6782 9.498176 CTGATACAGATCATTGATAATGTCCAA 57.502 33.333 16.28 4.81 41.33 3.53
2425 6783 8.873144 TCTGATACAGATCATTGATAATGTCCA 58.127 33.333 16.28 14.45 41.33 4.02
2426 6784 9.716531 TTCTGATACAGATCATTGATAATGTCC 57.283 33.333 16.28 11.84 41.33 4.02
2432 6790 9.899226 CGTACTTTCTGATACAGATCATTGATA 57.101 33.333 0.00 0.00 41.33 2.15
2433 6791 8.417106 ACGTACTTTCTGATACAGATCATTGAT 58.583 33.333 0.00 0.00 41.33 2.57
2434 6792 7.702348 CACGTACTTTCTGATACAGATCATTGA 59.298 37.037 2.30 0.00 41.33 2.57
2435 6793 7.702348 TCACGTACTTTCTGATACAGATCATTG 59.298 37.037 2.30 0.00 41.33 2.82
2436 6794 7.702772 GTCACGTACTTTCTGATACAGATCATT 59.297 37.037 2.30 0.00 41.33 2.57
2437 6795 7.067615 AGTCACGTACTTTCTGATACAGATCAT 59.932 37.037 2.30 0.00 40.39 2.45
2438 6796 6.374613 AGTCACGTACTTTCTGATACAGATCA 59.625 38.462 2.30 0.00 40.39 2.92
2439 6797 6.787225 AGTCACGTACTTTCTGATACAGATC 58.213 40.000 2.30 0.00 40.39 2.75
2440 6798 6.761099 AGTCACGTACTTTCTGATACAGAT 57.239 37.500 2.30 0.00 40.39 2.90
2441 6799 6.016527 ACAAGTCACGTACTTTCTGATACAGA 60.017 38.462 7.43 0.00 46.61 3.41
2442 6800 6.150318 ACAAGTCACGTACTTTCTGATACAG 58.850 40.000 7.43 0.00 46.61 2.74
2443 6801 6.080648 ACAAGTCACGTACTTTCTGATACA 57.919 37.500 7.43 0.00 46.61 2.29
2444 6802 7.042925 ACAAACAAGTCACGTACTTTCTGATAC 60.043 37.037 7.43 0.00 46.61 2.24
2445 6803 6.982141 ACAAACAAGTCACGTACTTTCTGATA 59.018 34.615 7.43 0.00 46.61 2.15
2446 6804 5.815740 ACAAACAAGTCACGTACTTTCTGAT 59.184 36.000 7.43 0.00 46.61 2.90
2447 6805 5.062934 CACAAACAAGTCACGTACTTTCTGA 59.937 40.000 7.43 0.00 46.61 3.27
2448 6806 5.255596 CACAAACAAGTCACGTACTTTCTG 58.744 41.667 7.43 7.73 46.61 3.02
2449 6807 4.331717 CCACAAACAAGTCACGTACTTTCT 59.668 41.667 7.43 0.00 46.61 2.52
2450 6808 4.495184 CCCACAAACAAGTCACGTACTTTC 60.495 45.833 7.43 0.00 46.61 2.62
2451 6809 3.375922 CCCACAAACAAGTCACGTACTTT 59.624 43.478 7.43 0.00 46.61 2.66
2453 6811 2.168936 TCCCACAAACAAGTCACGTACT 59.831 45.455 0.00 0.00 41.49 2.73
2454 6812 2.286025 GTCCCACAAACAAGTCACGTAC 59.714 50.000 0.00 0.00 0.00 3.67
2455 6813 2.168936 AGTCCCACAAACAAGTCACGTA 59.831 45.455 0.00 0.00 0.00 3.57
2456 6814 1.065709 AGTCCCACAAACAAGTCACGT 60.066 47.619 0.00 0.00 0.00 4.49
2457 6815 1.663695 AGTCCCACAAACAAGTCACG 58.336 50.000 0.00 0.00 0.00 4.35
2458 6816 3.058224 GCATAGTCCCACAAACAAGTCAC 60.058 47.826 0.00 0.00 0.00 3.67
2459 6817 3.146066 GCATAGTCCCACAAACAAGTCA 58.854 45.455 0.00 0.00 0.00 3.41
2460 6818 3.146066 TGCATAGTCCCACAAACAAGTC 58.854 45.455 0.00 0.00 0.00 3.01
2461 6819 3.222173 TGCATAGTCCCACAAACAAGT 57.778 42.857 0.00 0.00 0.00 3.16
2462 6820 4.789012 AATGCATAGTCCCACAAACAAG 57.211 40.909 0.00 0.00 0.00 3.16
2463 6821 7.777440 TCATATAATGCATAGTCCCACAAACAA 59.223 33.333 0.00 0.00 0.00 2.83
2464 6822 7.286313 TCATATAATGCATAGTCCCACAAACA 58.714 34.615 0.00 0.00 0.00 2.83
2465 6823 7.744087 TCATATAATGCATAGTCCCACAAAC 57.256 36.000 0.00 0.00 0.00 2.93
2466 6824 8.162746 TCATCATATAATGCATAGTCCCACAAA 58.837 33.333 0.00 0.00 0.00 2.83
2467 6825 7.688343 TCATCATATAATGCATAGTCCCACAA 58.312 34.615 0.00 0.00 0.00 3.33
2468 6826 7.256494 TCATCATATAATGCATAGTCCCACA 57.744 36.000 0.00 0.00 0.00 4.17
2469 6827 7.201556 CGTTCATCATATAATGCATAGTCCCAC 60.202 40.741 0.00 0.00 0.00 4.61
2470 6828 6.818142 CGTTCATCATATAATGCATAGTCCCA 59.182 38.462 0.00 0.00 0.00 4.37
2471 6829 6.818644 ACGTTCATCATATAATGCATAGTCCC 59.181 38.462 0.00 0.00 0.00 4.46
2472 6830 7.010552 GGACGTTCATCATATAATGCATAGTCC 59.989 40.741 0.00 6.77 33.77 3.85
2473 6831 7.761704 AGGACGTTCATCATATAATGCATAGTC 59.238 37.037 0.00 0.00 0.00 2.59
2474 6832 7.615403 AGGACGTTCATCATATAATGCATAGT 58.385 34.615 0.00 0.00 0.00 2.12
2475 6833 9.586435 TTAGGACGTTCATCATATAATGCATAG 57.414 33.333 0.00 0.00 0.00 2.23
2476 6834 9.936759 TTTAGGACGTTCATCATATAATGCATA 57.063 29.630 0.00 0.00 0.00 3.14
2477 6835 8.846943 TTTAGGACGTTCATCATATAATGCAT 57.153 30.769 0.00 0.00 0.00 3.96
2478 6836 8.669946 TTTTAGGACGTTCATCATATAATGCA 57.330 30.769 0.00 0.00 0.00 3.96
2479 6837 8.230486 CCTTTTAGGACGTTCATCATATAATGC 58.770 37.037 0.00 0.00 37.67 3.56
2480 6838 9.273016 ACCTTTTAGGACGTTCATCATATAATG 57.727 33.333 0.00 0.00 37.67 1.90
2481 6839 9.490379 GACCTTTTAGGACGTTCATCATATAAT 57.510 33.333 0.00 0.00 37.67 1.28
2482 6840 7.929785 GGACCTTTTAGGACGTTCATCATATAA 59.070 37.037 0.00 0.00 37.67 0.98
2483 6841 7.439381 GGACCTTTTAGGACGTTCATCATATA 58.561 38.462 0.00 0.00 37.67 0.86
2484 6842 6.289064 GGACCTTTTAGGACGTTCATCATAT 58.711 40.000 0.00 0.00 37.67 1.78
2485 6843 5.395990 GGGACCTTTTAGGACGTTCATCATA 60.396 44.000 0.00 0.00 37.67 2.15
2486 6844 4.514401 GGACCTTTTAGGACGTTCATCAT 58.486 43.478 0.00 0.00 37.67 2.45
2487 6845 3.307199 GGGACCTTTTAGGACGTTCATCA 60.307 47.826 0.00 0.00 37.67 3.07
2488 6846 3.055312 AGGGACCTTTTAGGACGTTCATC 60.055 47.826 0.00 0.00 37.67 2.92
2489 6847 2.910977 AGGGACCTTTTAGGACGTTCAT 59.089 45.455 0.00 0.00 37.67 2.57
2490 6848 2.332117 AGGGACCTTTTAGGACGTTCA 58.668 47.619 0.00 0.00 37.67 3.18
2491 6849 3.513119 ACTAGGGACCTTTTAGGACGTTC 59.487 47.826 0.00 0.00 37.67 3.95
2492 6850 3.513119 GACTAGGGACCTTTTAGGACGTT 59.487 47.826 0.00 0.00 37.67 3.99
2493 6851 3.095332 GACTAGGGACCTTTTAGGACGT 58.905 50.000 0.00 0.00 37.67 4.34
2494 6852 2.098770 CGACTAGGGACCTTTTAGGACG 59.901 54.545 0.00 0.00 37.67 4.79
2495 6853 3.359950 TCGACTAGGGACCTTTTAGGAC 58.640 50.000 0.00 0.00 37.67 3.85
2496 6854 3.744940 TCGACTAGGGACCTTTTAGGA 57.255 47.619 0.00 0.00 37.67 2.94
2497 6855 4.382793 CCTTTCGACTAGGGACCTTTTAGG 60.383 50.000 0.00 0.00 42.49 2.69
2498 6856 4.756502 CCTTTCGACTAGGGACCTTTTAG 58.243 47.826 0.00 0.00 0.00 1.85
2499 6857 4.813750 CCTTTCGACTAGGGACCTTTTA 57.186 45.455 0.00 0.00 0.00 1.52
2500 6858 3.697619 CCTTTCGACTAGGGACCTTTT 57.302 47.619 0.00 0.00 0.00 2.27
2508 6866 0.608640 ACACAGCCCTTTCGACTAGG 59.391 55.000 5.89 5.89 0.00 3.02
2509 6867 1.673033 CCACACAGCCCTTTCGACTAG 60.673 57.143 0.00 0.00 0.00 2.57
2510 6868 0.320374 CCACACAGCCCTTTCGACTA 59.680 55.000 0.00 0.00 0.00 2.59
2511 6869 1.071471 CCACACAGCCCTTTCGACT 59.929 57.895 0.00 0.00 0.00 4.18
2512 6870 1.070786 TCCACACAGCCCTTTCGAC 59.929 57.895 0.00 0.00 0.00 4.20
2513 6871 1.070786 GTCCACACAGCCCTTTCGA 59.929 57.895 0.00 0.00 0.00 3.71
2514 6872 2.317609 CGTCCACACAGCCCTTTCG 61.318 63.158 0.00 0.00 0.00 3.46
2515 6873 2.617274 GCGTCCACACAGCCCTTTC 61.617 63.158 0.00 0.00 0.00 2.62
2516 6874 2.594592 GCGTCCACACAGCCCTTT 60.595 61.111 0.00 0.00 0.00 3.11
2517 6875 4.988598 CGCGTCCACACAGCCCTT 62.989 66.667 0.00 0.00 0.00 3.95
2529 6887 4.175489 TCTAGTCGGCTGCGCGTC 62.175 66.667 8.43 0.00 0.00 5.19
2530 6888 4.477975 GTCTAGTCGGCTGCGCGT 62.478 66.667 8.43 0.00 0.00 6.01
2531 6889 2.703425 CTAGTCTAGTCGGCTGCGCG 62.703 65.000 0.00 0.00 0.00 6.86
2532 6890 1.009449 CTAGTCTAGTCGGCTGCGC 60.009 63.158 0.00 0.00 0.00 6.09
2533 6891 1.009449 GCTAGTCTAGTCGGCTGCG 60.009 63.158 0.00 0.00 0.00 5.18
2534 6892 0.671251 ATGCTAGTCTAGTCGGCTGC 59.329 55.000 0.00 0.00 0.00 5.25
2535 6893 3.753797 TCATATGCTAGTCTAGTCGGCTG 59.246 47.826 0.00 0.00 0.00 4.85
2536 6894 3.754323 GTCATATGCTAGTCTAGTCGGCT 59.246 47.826 8.68 0.00 0.00 5.52
2537 6895 3.502595 TGTCATATGCTAGTCTAGTCGGC 59.497 47.826 8.68 0.00 0.00 5.54
2538 6896 4.377533 CGTGTCATATGCTAGTCTAGTCGG 60.378 50.000 8.68 0.00 0.00 4.79
2539 6897 4.377533 CCGTGTCATATGCTAGTCTAGTCG 60.378 50.000 8.68 1.47 0.00 4.18
2540 6898 4.515944 ACCGTGTCATATGCTAGTCTAGTC 59.484 45.833 8.68 2.17 0.00 2.59
2541 6899 4.462133 ACCGTGTCATATGCTAGTCTAGT 58.538 43.478 8.68 0.00 0.00 2.57
2542 6900 4.377533 CGACCGTGTCATATGCTAGTCTAG 60.378 50.000 2.18 2.18 32.09 2.43
2543 6901 3.497262 CGACCGTGTCATATGCTAGTCTA 59.503 47.826 0.00 0.00 32.09 2.59
2544 6902 2.290916 CGACCGTGTCATATGCTAGTCT 59.709 50.000 0.00 0.00 32.09 3.24
2545 6903 2.289820 TCGACCGTGTCATATGCTAGTC 59.710 50.000 0.00 0.18 32.09 2.59
2546 6904 2.294979 TCGACCGTGTCATATGCTAGT 58.705 47.619 0.00 0.00 32.09 2.57
2547 6905 3.237628 CATCGACCGTGTCATATGCTAG 58.762 50.000 0.00 0.00 32.09 3.42
2548 6906 2.030274 CCATCGACCGTGTCATATGCTA 60.030 50.000 0.00 0.00 32.09 3.49
2549 6907 1.269778 CCATCGACCGTGTCATATGCT 60.270 52.381 0.00 0.00 32.09 3.79
2550 6908 1.139989 CCATCGACCGTGTCATATGC 58.860 55.000 0.00 0.00 32.09 3.14
2551 6909 1.139989 GCCATCGACCGTGTCATATG 58.860 55.000 0.00 0.00 32.09 1.78
2552 6910 1.040646 AGCCATCGACCGTGTCATAT 58.959 50.000 0.00 0.00 32.09 1.78
2553 6911 0.821517 AAGCCATCGACCGTGTCATA 59.178 50.000 0.00 0.00 32.09 2.15
2554 6912 0.740868 CAAGCCATCGACCGTGTCAT 60.741 55.000 0.00 0.00 32.09 3.06
2555 6913 1.374125 CAAGCCATCGACCGTGTCA 60.374 57.895 0.00 0.00 32.09 3.58
2556 6914 2.100631 CCAAGCCATCGACCGTGTC 61.101 63.158 0.00 0.00 0.00 3.67
2557 6915 2.047274 CCAAGCCATCGACCGTGT 60.047 61.111 0.00 0.00 0.00 4.49
2558 6916 2.047274 ACCAAGCCATCGACCGTG 60.047 61.111 0.00 0.00 0.00 4.94
2559 6917 2.227089 GAGACCAAGCCATCGACCGT 62.227 60.000 0.00 0.00 0.00 4.83
2560 6918 1.519455 GAGACCAAGCCATCGACCG 60.519 63.158 0.00 0.00 0.00 4.79
2561 6919 0.741221 GTGAGACCAAGCCATCGACC 60.741 60.000 0.00 0.00 0.00 4.79
2562 6920 0.247736 AGTGAGACCAAGCCATCGAC 59.752 55.000 0.00 0.00 0.00 4.20
2563 6921 1.751351 CTAGTGAGACCAAGCCATCGA 59.249 52.381 0.00 0.00 0.00 3.59
2564 6922 1.478510 ACTAGTGAGACCAAGCCATCG 59.521 52.381 0.00 0.00 0.00 3.84
2565 6923 2.497675 TGACTAGTGAGACCAAGCCATC 59.502 50.000 0.00 0.00 0.00 3.51
2566 6924 2.540383 TGACTAGTGAGACCAAGCCAT 58.460 47.619 0.00 0.00 0.00 4.40
2567 6925 2.009681 TGACTAGTGAGACCAAGCCA 57.990 50.000 0.00 0.00 0.00 4.75
2568 6926 2.419297 CCATGACTAGTGAGACCAAGCC 60.419 54.545 0.00 0.00 0.00 4.35
2569 6927 2.497675 TCCATGACTAGTGAGACCAAGC 59.502 50.000 0.00 0.00 0.00 4.01
2570 6928 3.430098 GCTCCATGACTAGTGAGACCAAG 60.430 52.174 0.00 0.00 0.00 3.61
2571 6929 2.497675 GCTCCATGACTAGTGAGACCAA 59.502 50.000 0.00 0.00 0.00 3.67
2572 6930 2.103373 GCTCCATGACTAGTGAGACCA 58.897 52.381 0.00 0.00 0.00 4.02
2573 6931 2.103373 TGCTCCATGACTAGTGAGACC 58.897 52.381 0.00 0.00 0.00 3.85
2574 6932 4.118410 CAATGCTCCATGACTAGTGAGAC 58.882 47.826 0.00 0.00 0.00 3.36
2575 6933 3.133542 CCAATGCTCCATGACTAGTGAGA 59.866 47.826 0.00 0.00 0.00 3.27
2576 6934 3.133542 TCCAATGCTCCATGACTAGTGAG 59.866 47.826 0.00 1.36 0.00 3.51
2577 6935 3.106827 TCCAATGCTCCATGACTAGTGA 58.893 45.455 0.00 0.00 0.00 3.41
2578 6936 3.548745 TCCAATGCTCCATGACTAGTG 57.451 47.619 0.00 0.00 0.00 2.74
2579 6937 4.904251 AGTATCCAATGCTCCATGACTAGT 59.096 41.667 0.00 0.00 0.00 2.57
2580 6938 5.480642 AGTATCCAATGCTCCATGACTAG 57.519 43.478 0.00 0.00 0.00 2.57
2581 6939 6.239600 GGTTAGTATCCAATGCTCCATGACTA 60.240 42.308 0.00 0.00 0.00 2.59
2582 6940 5.455326 GGTTAGTATCCAATGCTCCATGACT 60.455 44.000 0.00 0.00 0.00 3.41
2583 6941 4.757149 GGTTAGTATCCAATGCTCCATGAC 59.243 45.833 0.00 0.00 0.00 3.06
2584 6942 4.503123 CGGTTAGTATCCAATGCTCCATGA 60.503 45.833 0.00 0.00 0.00 3.07
2585 6943 3.748048 CGGTTAGTATCCAATGCTCCATG 59.252 47.826 0.00 0.00 0.00 3.66
2586 6944 3.244561 CCGGTTAGTATCCAATGCTCCAT 60.245 47.826 0.00 0.00 0.00 3.41
2587 6945 2.104111 CCGGTTAGTATCCAATGCTCCA 59.896 50.000 0.00 0.00 0.00 3.86
2588 6946 2.367567 TCCGGTTAGTATCCAATGCTCC 59.632 50.000 0.00 0.00 0.00 4.70
2589 6947 3.746045 TCCGGTTAGTATCCAATGCTC 57.254 47.619 0.00 0.00 0.00 4.26
2590 6948 5.818678 TTATCCGGTTAGTATCCAATGCT 57.181 39.130 0.00 0.00 0.00 3.79
2591 6949 7.226720 CCATATTATCCGGTTAGTATCCAATGC 59.773 40.741 0.00 0.00 0.00 3.56
2592 6950 8.482943 TCCATATTATCCGGTTAGTATCCAATG 58.517 37.037 0.00 0.00 0.00 2.82
2593 6951 8.483758 GTCCATATTATCCGGTTAGTATCCAAT 58.516 37.037 0.00 0.00 0.00 3.16
2594 6952 7.676893 AGTCCATATTATCCGGTTAGTATCCAA 59.323 37.037 0.00 0.00 0.00 3.53
2595 6953 7.186972 AGTCCATATTATCCGGTTAGTATCCA 58.813 38.462 0.00 0.00 0.00 3.41
2596 6954 7.468357 CGAGTCCATATTATCCGGTTAGTATCC 60.468 44.444 0.00 0.00 0.00 2.59
2597 6955 7.416022 CGAGTCCATATTATCCGGTTAGTATC 58.584 42.308 0.00 0.00 0.00 2.24
2598 6956 6.320672 CCGAGTCCATATTATCCGGTTAGTAT 59.679 42.308 0.00 1.20 0.00 2.12
2599 6957 5.649395 CCGAGTCCATATTATCCGGTTAGTA 59.351 44.000 0.00 0.00 0.00 1.82
2600 6958 4.461781 CCGAGTCCATATTATCCGGTTAGT 59.538 45.833 0.00 0.00 0.00 2.24
2601 6959 4.142227 CCCGAGTCCATATTATCCGGTTAG 60.142 50.000 0.00 0.00 34.25 2.34
2602 6960 3.765511 CCCGAGTCCATATTATCCGGTTA 59.234 47.826 0.00 0.00 34.25 2.85
2603 6961 2.565834 CCCGAGTCCATATTATCCGGTT 59.434 50.000 0.00 0.00 34.25 4.44
2604 6962 2.176889 CCCGAGTCCATATTATCCGGT 58.823 52.381 0.00 0.00 34.25 5.28
2605 6963 2.427453 CTCCCGAGTCCATATTATCCGG 59.573 54.545 0.00 0.00 35.68 5.14
2606 6964 2.427453 CCTCCCGAGTCCATATTATCCG 59.573 54.545 0.00 0.00 0.00 4.18
2607 6965 3.709587 TCCTCCCGAGTCCATATTATCC 58.290 50.000 0.00 0.00 0.00 2.59
2608 6966 5.068460 CAGATCCTCCCGAGTCCATATTATC 59.932 48.000 0.00 0.00 0.00 1.75
2609 6967 4.959210 CAGATCCTCCCGAGTCCATATTAT 59.041 45.833 0.00 0.00 0.00 1.28
2610 6968 4.344978 CAGATCCTCCCGAGTCCATATTA 58.655 47.826 0.00 0.00 0.00 0.98
2611 6969 3.169099 CAGATCCTCCCGAGTCCATATT 58.831 50.000 0.00 0.00 0.00 1.28
2612 6970 2.558575 CCAGATCCTCCCGAGTCCATAT 60.559 54.545 0.00 0.00 0.00 1.78
2613 6971 1.203063 CCAGATCCTCCCGAGTCCATA 60.203 57.143 0.00 0.00 0.00 2.74
2614 6972 0.470833 CCAGATCCTCCCGAGTCCAT 60.471 60.000 0.00 0.00 0.00 3.41
2615 6973 1.075970 CCAGATCCTCCCGAGTCCA 60.076 63.158 0.00 0.00 0.00 4.02
2616 6974 1.075896 ACCAGATCCTCCCGAGTCC 60.076 63.158 0.00 0.00 0.00 3.85
2617 6975 1.448922 CGACCAGATCCTCCCGAGTC 61.449 65.000 0.00 0.00 0.00 3.36
2618 6976 1.454111 CGACCAGATCCTCCCGAGT 60.454 63.158 0.00 0.00 0.00 4.18
2619 6977 2.196925 CCGACCAGATCCTCCCGAG 61.197 68.421 0.00 0.00 0.00 4.63
2620 6978 2.008006 ATCCGACCAGATCCTCCCGA 62.008 60.000 0.00 0.00 0.00 5.14
2621 6979 1.115930 AATCCGACCAGATCCTCCCG 61.116 60.000 0.00 0.00 0.00 5.14
2622 6980 0.682292 GAATCCGACCAGATCCTCCC 59.318 60.000 0.00 0.00 0.00 4.30
2623 6981 0.315568 CGAATCCGACCAGATCCTCC 59.684 60.000 0.00 0.00 38.22 4.30
2624 6982 1.319541 TCGAATCCGACCAGATCCTC 58.680 55.000 0.00 0.00 40.30 3.71
2625 6983 3.515059 TCGAATCCGACCAGATCCT 57.485 52.632 0.00 0.00 40.30 3.24
2642 7000 1.012841 AACTCGGATCCGACTACGTC 58.987 55.000 32.59 0.00 44.01 4.34
2643 7001 0.731417 CAACTCGGATCCGACTACGT 59.269 55.000 32.59 24.66 44.01 3.57
2644 7002 1.003759 CTCAACTCGGATCCGACTACG 60.004 57.143 32.59 23.99 44.01 3.51
2645 7003 2.286872 TCTCAACTCGGATCCGACTAC 58.713 52.381 32.59 0.00 44.01 2.73
2646 7004 2.704464 TCTCAACTCGGATCCGACTA 57.296 50.000 32.59 13.44 44.01 2.59
2647 7005 2.060050 ATCTCAACTCGGATCCGACT 57.940 50.000 32.59 20.95 44.01 4.18
2648 7006 2.349627 CGTATCTCAACTCGGATCCGAC 60.350 54.545 32.59 18.39 44.01 4.79
2649 7007 1.871676 CGTATCTCAACTCGGATCCGA 59.128 52.381 33.55 33.55 46.87 4.55
2650 7008 1.069159 CCGTATCTCAACTCGGATCCG 60.069 57.143 28.62 28.62 44.86 4.18
2651 7009 1.955080 ACCGTATCTCAACTCGGATCC 59.045 52.381 0.00 0.00 44.86 3.36
2652 7010 2.030981 GGACCGTATCTCAACTCGGATC 60.031 54.545 9.37 3.66 44.86 3.36
2653 7011 1.955080 GGACCGTATCTCAACTCGGAT 59.045 52.381 9.37 0.00 44.86 4.18
2654 7012 1.386533 GGACCGTATCTCAACTCGGA 58.613 55.000 9.37 0.00 44.86 4.55
2655 7013 0.029035 CGGACCGTATCTCAACTCGG 59.971 60.000 5.48 0.00 46.98 4.63
2656 7014 1.003759 CTCGGACCGTATCTCAACTCG 60.004 57.143 14.79 0.00 0.00 4.18
2657 7015 2.015587 ACTCGGACCGTATCTCAACTC 58.984 52.381 14.79 0.00 0.00 3.01
2658 7016 2.015587 GACTCGGACCGTATCTCAACT 58.984 52.381 14.79 0.00 0.00 3.16
2659 7017 1.267932 CGACTCGGACCGTATCTCAAC 60.268 57.143 14.79 0.00 0.00 3.18
2660 7018 1.012086 CGACTCGGACCGTATCTCAA 58.988 55.000 14.79 0.00 0.00 3.02
2661 7019 2.686602 CGACTCGGACCGTATCTCA 58.313 57.895 14.79 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.