Multiple sequence alignment - TraesCS5A01G253000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G253000 chr5A 100.000 8391 0 0 1 8391 469046702 469055092 0.000000e+00 15496.0
1 TraesCS5A01G253000 chr5B 95.100 3163 106 14 2976 6106 434410595 434413740 0.000000e+00 4937.0
2 TraesCS5A01G253000 chr5B 92.360 2500 137 28 1246 3730 434666922 434669382 0.000000e+00 3509.0
3 TraesCS5A01G253000 chr5B 94.151 2274 90 20 6153 8391 434413749 434416014 0.000000e+00 3422.0
4 TraesCS5A01G253000 chr5B 94.856 1905 55 22 3728 5594 434669458 434671357 0.000000e+00 2935.0
5 TraesCS5A01G253000 chr5B 95.182 1266 35 7 5626 6876 434671606 434672860 0.000000e+00 1977.0
6 TraesCS5A01G253000 chr5B 91.860 1376 93 15 1569 2939 434409237 434410598 0.000000e+00 1903.0
7 TraesCS5A01G253000 chr5B 92.601 419 26 2 834 1247 434408735 434409153 1.560000e-166 597.0
8 TraesCS5A01G253000 chr5B 91.463 246 13 4 1009 1247 434666500 434666744 1.750000e-86 331.0
9 TraesCS5A01G253000 chr5B 90.972 144 5 4 1 140 434408071 434408210 4.000000e-43 187.0
10 TraesCS5A01G253000 chr5B 98.413 63 1 0 5587 5649 434671543 434671605 2.480000e-20 111.0
11 TraesCS5A01G253000 chr5D 93.081 2587 139 18 1244 3807 367233123 367235692 0.000000e+00 3749.0
12 TraesCS5A01G253000 chr5D 91.289 2250 136 25 4549 6783 367236431 367238635 0.000000e+00 3014.0
13 TraesCS5A01G253000 chr5D 93.004 1215 68 9 7191 8391 367238889 367240100 0.000000e+00 1757.0
14 TraesCS5A01G253000 chr5D 95.317 726 32 2 3794 4519 367235708 367236431 0.000000e+00 1151.0
15 TraesCS5A01G253000 chr5D 87.533 377 21 9 877 1247 367232592 367232948 6.060000e-111 412.0
16 TraesCS5A01G253000 chr4B 92.308 39 3 0 709 747 653467040 653467002 1.000000e-03 56.5
17 TraesCS5A01G253000 chr4B 96.774 31 1 0 717 747 653466771 653466741 1.500000e-02 52.8
18 TraesCS5A01G253000 chr3A 100.000 30 0 0 6851 6880 727992754 727992725 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G253000 chr5A 469046702 469055092 8390 False 15496.0 15496 100.0000 1 8391 1 chr5A.!!$F1 8390
1 TraesCS5A01G253000 chr5B 434408071 434416014 7943 False 2209.2 4937 92.9368 1 8391 5 chr5B.!!$F1 8390
2 TraesCS5A01G253000 chr5B 434666500 434672860 6360 False 1772.6 3509 94.4548 1009 6876 5 chr5B.!!$F2 5867
3 TraesCS5A01G253000 chr5D 367232592 367240100 7508 False 2016.6 3749 92.0448 877 8391 5 chr5D.!!$F1 7514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 427 0.038526 GTGGGACGGCCGTGATATAG 60.039 60.000 39.65 0.8 33.83 1.31 F
1185 1229 0.097325 TGTTTCGCCGTGTGTGTTTC 59.903 50.000 0.00 0.0 0.00 2.78 F
1537 1775 0.328258 AAGCTAGGAATGGCACCGTT 59.672 50.000 0.00 0.0 0.00 4.44 F
3025 3338 1.134189 GTATGCTACACCAGAACCCCC 60.134 57.143 0.00 0.0 0.00 5.40 F
3682 3999 1.885157 CATGCGGTCATGCCTGTTT 59.115 52.632 4.92 0.0 43.00 2.83 F
3756 4150 2.030457 ACTTGCTGTTTCTGACGTTTCG 59.970 45.455 0.00 0.0 0.00 3.46 F
5271 5749 0.323629 CACCTGGCGGGAAGACTTTA 59.676 55.000 21.81 0.0 38.76 1.85 F
5376 5855 1.136828 TGGGACCTTGTGCTAGTGTT 58.863 50.000 0.00 0.0 0.00 3.32 F
6672 7398 1.271856 TGTTCAGAGGCATCCGGTAA 58.728 50.000 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1911 1.357991 GCGCTCTTCACCTGCTCTTC 61.358 60.000 0.00 0.0 0.00 2.87 R
2960 3225 1.839354 TCCAGCATGCCAACTATCAGA 59.161 47.619 15.66 0.0 31.97 3.27 R
3361 3678 4.202367 GGCTTACAGCATAACCCTACTGAT 60.202 45.833 0.00 0.0 44.75 2.90 R
4744 5198 1.275010 GGCGAATTGGGGAAATTGTGT 59.725 47.619 0.00 0.0 38.64 3.72 R
5271 5749 1.529948 CAGCCGGGATGCCATGAAT 60.530 57.895 2.18 0.0 0.00 2.57 R
5376 5855 4.160252 GCATGGCCAGAAAGGAAAAGATAA 59.840 41.667 13.05 0.0 41.22 1.75 R
6930 7698 0.960364 GGAATGGCAGCGACTTCCAA 60.960 55.000 11.08 0.0 37.65 3.53 R
6943 7711 4.289672 AGGGCTAACATATAGTGGGAATGG 59.710 45.833 0.00 0.0 0.00 3.16 R
7534 8350 0.814457 CAGAGCGCAGAAGACTACCT 59.186 55.000 11.47 0.0 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.485066 GACGGGGGTTGAGTATGATGT 59.515 52.381 0.00 0.00 0.00 3.06
48 49 2.696707 GACGGGGGTTGAGTATGATGTA 59.303 50.000 0.00 0.00 0.00 2.29
49 50 2.433239 ACGGGGGTTGAGTATGATGTAC 59.567 50.000 0.00 0.00 0.00 2.90
86 91 7.401860 CAACATGTGTATTAATCAAGGTCTCG 58.598 38.462 0.00 0.00 0.00 4.04
87 92 6.049149 ACATGTGTATTAATCAAGGTCTCGG 58.951 40.000 0.00 0.00 0.00 4.63
128 133 4.810790 CTCTTTTGTCCGATGAGTACAGT 58.189 43.478 0.00 0.00 0.00 3.55
129 134 5.209818 TCTTTTGTCCGATGAGTACAGTT 57.790 39.130 0.00 0.00 0.00 3.16
130 135 4.988540 TCTTTTGTCCGATGAGTACAGTTG 59.011 41.667 0.00 0.00 0.00 3.16
131 136 3.313012 TTGTCCGATGAGTACAGTTGG 57.687 47.619 0.00 0.00 0.00 3.77
132 137 2.521126 TGTCCGATGAGTACAGTTGGA 58.479 47.619 0.00 0.00 0.00 3.53
133 138 2.230508 TGTCCGATGAGTACAGTTGGAC 59.769 50.000 17.95 17.95 41.53 4.02
134 139 2.492484 GTCCGATGAGTACAGTTGGACT 59.508 50.000 17.69 0.00 39.82 3.85
135 140 3.056749 GTCCGATGAGTACAGTTGGACTT 60.057 47.826 17.69 0.00 39.82 3.01
136 141 3.576982 TCCGATGAGTACAGTTGGACTTT 59.423 43.478 0.00 0.00 0.00 2.66
137 142 4.039973 TCCGATGAGTACAGTTGGACTTTT 59.960 41.667 0.00 0.00 0.00 2.27
138 143 4.755123 CCGATGAGTACAGTTGGACTTTTT 59.245 41.667 0.00 0.00 0.00 1.94
170 175 0.736053 TCACGGTTGGACTGTTTTGC 59.264 50.000 0.00 0.00 35.04 3.68
187 192 7.388460 TGTTTTGCAGTGGAAATTTTCATTT 57.612 28.000 10.84 0.00 35.12 2.32
188 193 7.470900 TGTTTTGCAGTGGAAATTTTCATTTC 58.529 30.769 10.84 0.00 45.42 2.17
213 218 9.151471 TCATATTTTCTAGTTAGTGTCAACTGC 57.849 33.333 0.00 0.00 39.12 4.40
224 229 2.854185 GTGTCAACTGCAACAGAAAAGC 59.146 45.455 0.78 0.00 35.18 3.51
228 233 1.372128 CTGCAACAGAAAAGCGGGC 60.372 57.895 0.00 0.00 32.44 6.13
268 273 3.882888 GGAAGATGGAATTTGATACGGCA 59.117 43.478 0.00 0.00 0.00 5.69
269 274 4.023707 GGAAGATGGAATTTGATACGGCAG 60.024 45.833 0.00 0.00 0.00 4.85
286 291 5.978814 ACGGCAGTAGAGAAATAATCAAGT 58.021 37.500 0.00 0.00 0.00 3.16
287 292 6.407202 ACGGCAGTAGAGAAATAATCAAGTT 58.593 36.000 0.00 0.00 0.00 2.66
288 293 6.879458 ACGGCAGTAGAGAAATAATCAAGTTT 59.121 34.615 0.00 0.00 0.00 2.66
290 295 8.237267 CGGCAGTAGAGAAATAATCAAGTTTTT 58.763 33.333 0.00 0.00 0.00 1.94
340 345 5.013495 ACAGTCAAAGAGAAGGAATGGATGA 59.987 40.000 0.00 0.00 31.46 2.92
341 346 6.120905 CAGTCAAAGAGAAGGAATGGATGAT 58.879 40.000 0.00 0.00 0.00 2.45
343 352 7.226325 CAGTCAAAGAGAAGGAATGGATGATAC 59.774 40.741 0.00 0.00 0.00 2.24
346 355 8.992349 TCAAAGAGAAGGAATGGATGATACTAA 58.008 33.333 0.00 0.00 0.00 2.24
348 357 9.620259 AAAGAGAAGGAATGGATGATACTAAAC 57.380 33.333 0.00 0.00 0.00 2.01
353 362 9.832445 GAAGGAATGGATGATACTAAACTACAA 57.168 33.333 0.00 0.00 0.00 2.41
364 373 5.153950 ACTAAACTACAAGCAGGGAAGAG 57.846 43.478 0.00 0.00 0.00 2.85
367 376 0.615331 CTACAAGCAGGGAAGAGGCA 59.385 55.000 0.00 0.00 0.00 4.75
370 379 2.532532 AAGCAGGGAAGAGGCAGCA 61.533 57.895 0.00 0.00 0.00 4.41
371 380 2.438075 GCAGGGAAGAGGCAGCAG 60.438 66.667 0.00 0.00 0.00 4.24
372 381 2.438075 CAGGGAAGAGGCAGCAGC 60.438 66.667 0.00 0.00 41.10 5.25
375 384 2.188994 GGAAGAGGCAGCAGCGAT 59.811 61.111 0.00 0.00 43.41 4.58
376 385 2.178890 GGAAGAGGCAGCAGCGATG 61.179 63.158 0.00 0.00 43.41 3.84
382 391 2.498248 GCAGCAGCGATGGAGAGA 59.502 61.111 1.46 0.00 0.00 3.10
383 392 1.882167 GCAGCAGCGATGGAGAGAC 60.882 63.158 1.46 0.00 0.00 3.36
384 393 1.815196 CAGCAGCGATGGAGAGACT 59.185 57.895 1.46 0.00 0.00 3.24
385 394 0.528033 CAGCAGCGATGGAGAGACTG 60.528 60.000 1.46 0.00 0.00 3.51
386 395 1.227205 GCAGCGATGGAGAGACTGG 60.227 63.158 1.46 0.00 0.00 4.00
387 396 1.954362 GCAGCGATGGAGAGACTGGT 61.954 60.000 1.46 0.00 0.00 4.00
388 397 0.179116 CAGCGATGGAGAGACTGGTG 60.179 60.000 0.00 0.00 0.00 4.17
389 398 1.142748 GCGATGGAGAGACTGGTGG 59.857 63.158 0.00 0.00 0.00 4.61
390 399 1.142748 CGATGGAGAGACTGGTGGC 59.857 63.158 0.00 0.00 0.00 5.01
391 400 1.524482 GATGGAGAGACTGGTGGCC 59.476 63.158 0.00 0.00 0.00 5.36
392 401 1.977293 GATGGAGAGACTGGTGGCCC 61.977 65.000 0.00 0.00 0.00 5.80
393 402 2.607750 GGAGAGACTGGTGGCCCA 60.608 66.667 0.00 0.00 38.87 5.36
394 403 1.997874 GGAGAGACTGGTGGCCCAT 60.998 63.158 0.00 0.00 40.90 4.00
395 404 1.222936 GAGAGACTGGTGGCCCATG 59.777 63.158 0.00 0.00 40.90 3.66
396 405 2.262774 GAGAGACTGGTGGCCCATGG 62.263 65.000 4.14 4.14 40.90 3.66
414 423 4.082523 CAGTGGGACGGCCGTGAT 62.083 66.667 39.65 12.23 33.83 3.06
415 424 2.363276 AGTGGGACGGCCGTGATA 60.363 61.111 39.65 18.52 33.83 2.15
416 425 1.760875 AGTGGGACGGCCGTGATAT 60.761 57.895 39.65 11.23 33.83 1.63
417 426 0.468585 AGTGGGACGGCCGTGATATA 60.469 55.000 39.65 14.48 33.83 0.86
418 427 0.038526 GTGGGACGGCCGTGATATAG 60.039 60.000 39.65 0.80 33.83 1.31
419 428 0.178984 TGGGACGGCCGTGATATAGA 60.179 55.000 39.65 9.17 33.83 1.98
420 429 0.526662 GGGACGGCCGTGATATAGAG 59.473 60.000 39.65 0.00 33.83 2.43
421 430 1.531423 GGACGGCCGTGATATAGAGA 58.469 55.000 39.65 0.00 0.00 3.10
422 431 1.469308 GGACGGCCGTGATATAGAGAG 59.531 57.143 39.65 0.00 0.00 3.20
423 432 2.424557 GACGGCCGTGATATAGAGAGA 58.575 52.381 39.65 0.00 0.00 3.10
424 433 2.812591 GACGGCCGTGATATAGAGAGAA 59.187 50.000 39.65 0.00 0.00 2.87
425 434 2.814919 ACGGCCGTGATATAGAGAGAAG 59.185 50.000 33.75 0.00 0.00 2.85
426 435 3.075148 CGGCCGTGATATAGAGAGAAGA 58.925 50.000 19.50 0.00 0.00 2.87
427 436 3.120130 CGGCCGTGATATAGAGAGAAGAC 60.120 52.174 19.50 0.00 0.00 3.01
428 437 3.821600 GGCCGTGATATAGAGAGAAGACA 59.178 47.826 0.00 0.00 0.00 3.41
429 438 4.083003 GGCCGTGATATAGAGAGAAGACAG 60.083 50.000 0.00 0.00 0.00 3.51
430 439 4.614993 GCCGTGATATAGAGAGAAGACAGC 60.615 50.000 0.00 0.00 0.00 4.40
431 440 4.517075 CCGTGATATAGAGAGAAGACAGCA 59.483 45.833 0.00 0.00 0.00 4.41
432 441 5.448438 CGTGATATAGAGAGAAGACAGCAC 58.552 45.833 0.00 0.00 0.00 4.40
433 442 5.008118 CGTGATATAGAGAGAAGACAGCACA 59.992 44.000 0.00 0.00 0.00 4.57
434 443 6.205784 GTGATATAGAGAGAAGACAGCACAC 58.794 44.000 0.00 0.00 0.00 3.82
435 444 3.773860 ATAGAGAGAAGACAGCACACG 57.226 47.619 0.00 0.00 0.00 4.49
441 450 3.120086 AAGACAGCACACGGCCCTT 62.120 57.895 0.00 0.00 46.50 3.95
456 465 1.744368 CCTTGCAGCAGCGACAGAT 60.744 57.895 0.00 0.00 46.23 2.90
457 466 1.303799 CCTTGCAGCAGCGACAGATT 61.304 55.000 0.00 0.00 46.23 2.40
462 471 0.877071 CAGCAGCGACAGATTGGTTT 59.123 50.000 0.00 0.00 0.00 3.27
464 473 1.956477 AGCAGCGACAGATTGGTTTTT 59.044 42.857 0.00 0.00 0.00 1.94
465 474 3.058293 CAGCAGCGACAGATTGGTTTTTA 60.058 43.478 0.00 0.00 0.00 1.52
466 475 3.568007 AGCAGCGACAGATTGGTTTTTAA 59.432 39.130 0.00 0.00 0.00 1.52
467 476 4.037446 AGCAGCGACAGATTGGTTTTTAAA 59.963 37.500 0.00 0.00 0.00 1.52
468 477 4.742659 GCAGCGACAGATTGGTTTTTAAAA 59.257 37.500 0.00 0.00 0.00 1.52
470 479 6.073819 GCAGCGACAGATTGGTTTTTAAAATT 60.074 34.615 0.55 0.00 0.00 1.82
471 480 7.501515 CAGCGACAGATTGGTTTTTAAAATTC 58.498 34.615 0.55 0.00 0.00 2.17
472 481 7.168972 CAGCGACAGATTGGTTTTTAAAATTCA 59.831 33.333 0.55 0.93 0.00 2.57
473 482 7.872483 AGCGACAGATTGGTTTTTAAAATTCAT 59.128 29.630 0.55 0.00 0.00 2.57
474 483 7.951565 GCGACAGATTGGTTTTTAAAATTCATG 59.048 33.333 0.55 2.55 0.00 3.07
475 484 9.190858 CGACAGATTGGTTTTTAAAATTCATGA 57.809 29.630 0.55 0.00 0.00 3.07
495 504 9.784680 TTCATGAATTGGTTTTTGAATTTTGTG 57.215 25.926 3.38 0.00 0.00 3.33
496 505 8.404000 TCATGAATTGGTTTTTGAATTTTGTGG 58.596 29.630 0.00 0.00 0.00 4.17
497 506 7.928307 TGAATTGGTTTTTGAATTTTGTGGA 57.072 28.000 0.00 0.00 0.00 4.02
498 507 7.756558 TGAATTGGTTTTTGAATTTTGTGGAC 58.243 30.769 0.00 0.00 0.00 4.02
501 510 7.693969 TTGGTTTTTGAATTTTGTGGACATT 57.306 28.000 0.00 0.00 0.00 2.71
502 511 7.693969 TGGTTTTTGAATTTTGTGGACATTT 57.306 28.000 0.00 0.00 0.00 2.32
503 512 8.115490 TGGTTTTTGAATTTTGTGGACATTTT 57.885 26.923 0.00 0.00 0.00 1.82
516 525 9.658799 TTTGTGGACATTTTTAAAAGTTCATGA 57.341 25.926 14.37 0.00 29.03 3.07
518 527 9.092876 TGTGGACATTTTTAAAAGTTCATGAAC 57.907 29.630 27.69 27.69 41.45 3.18
520 529 9.829507 TGGACATTTTTAAAAGTTCATGAACAT 57.170 25.926 33.92 23.50 43.47 2.71
566 575 9.587772 TTTTTGATTTCCTGAACATTTTTACGA 57.412 25.926 0.00 0.00 0.00 3.43
569 578 9.757227 TTGATTTCCTGAACATTTTTACGAAAT 57.243 25.926 0.00 0.00 32.83 2.17
570 579 9.405587 TGATTTCCTGAACATTTTTACGAAATC 57.594 29.630 10.69 10.69 42.06 2.17
571 580 7.845617 TTTCCTGAACATTTTTACGAAATCG 57.154 32.000 0.48 0.48 46.33 3.34
588 597 7.148733 CGAAATCGTGAACATTTTTGAAAGT 57.851 32.000 0.00 0.00 34.11 2.66
591 600 9.408731 GAAATCGTGAACATTTTTGAAAGTTTC 57.591 29.630 8.75 8.75 0.00 2.78
594 603 6.863645 TCGTGAACATTTTTGAAAGTTTCACA 59.136 30.769 17.85 9.11 39.87 3.58
595 604 7.382488 TCGTGAACATTTTTGAAAGTTTCACAA 59.618 29.630 17.85 14.76 39.87 3.33
596 605 8.006590 CGTGAACATTTTTGAAAGTTTCACAAA 58.993 29.630 24.62 24.62 41.77 2.83
597 606 9.101971 GTGAACATTTTTGAAAGTTTCACAAAC 57.898 29.630 24.81 15.84 40.77 2.93
598 607 8.830580 TGAACATTTTTGAAAGTTTCACAAACA 58.169 25.926 24.81 17.62 40.77 2.83
599 608 9.824534 GAACATTTTTGAAAGTTTCACAAACAT 57.175 25.926 24.81 16.18 40.77 2.71
664 673 7.784633 TTTTGAAACTCAACATTGATTTCCC 57.215 32.000 17.40 7.78 35.89 3.97
665 674 6.477053 TTGAAACTCAACATTGATTTCCCA 57.523 33.333 17.40 9.39 35.83 4.37
666 675 6.669125 TGAAACTCAACATTGATTTCCCAT 57.331 33.333 17.40 0.00 35.83 4.00
667 676 7.773489 TGAAACTCAACATTGATTTCCCATA 57.227 32.000 17.40 5.78 35.83 2.74
669 678 7.232330 TGAAACTCAACATTGATTTCCCATACA 59.768 33.333 17.40 0.00 35.83 2.29
673 682 8.596293 ACTCAACATTGATTTCCCATACATTTT 58.404 29.630 0.00 0.00 36.46 1.82
674 683 9.439500 CTCAACATTGATTTCCCATACATTTTT 57.561 29.630 0.00 0.00 36.46 1.94
675 684 9.217278 TCAACATTGATTTCCCATACATTTTTG 57.783 29.630 0.00 0.00 31.01 2.44
676 685 9.001542 CAACATTGATTTCCCATACATTTTTGT 57.998 29.630 0.00 0.00 0.00 2.83
679 688 9.217278 CATTGATTTCCCATACATTTTTGTTCA 57.783 29.630 0.00 0.00 0.00 3.18
680 689 9.790344 ATTGATTTCCCATACATTTTTGTTCAA 57.210 25.926 0.00 0.00 0.00 2.69
681 690 9.618890 TTGATTTCCCATACATTTTTGTTCAAA 57.381 25.926 0.00 0.00 0.00 2.69
682 691 9.618890 TGATTTCCCATACATTTTTGTTCAAAA 57.381 25.926 6.61 6.61 38.76 2.44
683 692 9.877137 GATTTCCCATACATTTTTGTTCAAAAC 57.123 29.630 9.76 0.00 37.18 2.43
684 693 7.793927 TTCCCATACATTTTTGTTCAAAACC 57.206 32.000 9.76 0.00 37.18 3.27
685 694 5.986135 TCCCATACATTTTTGTTCAAAACCG 59.014 36.000 9.76 7.10 37.18 4.44
686 695 5.755861 CCCATACATTTTTGTTCAAAACCGT 59.244 36.000 9.76 11.50 37.18 4.83
687 696 6.292596 CCCATACATTTTTGTTCAAAACCGTG 60.293 38.462 9.76 11.00 37.18 4.94
688 697 6.477033 CCATACATTTTTGTTCAAAACCGTGA 59.523 34.615 9.76 0.00 37.18 4.35
689 698 7.010552 CCATACATTTTTGTTCAAAACCGTGAA 59.989 33.333 9.76 0.00 37.18 3.18
691 700 9.751542 ATACATTTTTGTTCAAAACCGTGAATA 57.248 25.926 9.76 0.00 39.61 1.75
694 703 9.928236 CATTTTTGTTCAAAACCGTGAATATTT 57.072 25.926 9.76 0.00 39.61 1.40
723 732 8.991026 TCAAAATCACAAACATTGATTGAATCC 58.009 29.630 12.94 0.00 41.81 3.01
724 733 8.775527 CAAAATCACAAACATTGATTGAATCCA 58.224 29.630 12.94 0.00 41.81 3.41
725 734 7.894376 AATCACAAACATTGATTGAATCCAC 57.106 32.000 12.94 0.00 41.24 4.02
726 735 6.402456 TCACAAACATTGATTGAATCCACA 57.598 33.333 12.94 0.00 0.00 4.17
727 736 6.995364 TCACAAACATTGATTGAATCCACAT 58.005 32.000 12.94 0.00 0.00 3.21
728 737 8.120140 TCACAAACATTGATTGAATCCACATA 57.880 30.769 12.94 0.00 0.00 2.29
729 738 8.028354 TCACAAACATTGATTGAATCCACATAC 58.972 33.333 12.94 0.00 0.00 2.39
730 739 7.813627 CACAAACATTGATTGAATCCACATACA 59.186 33.333 12.94 0.00 0.00 2.29
731 740 8.533657 ACAAACATTGATTGAATCCACATACAT 58.466 29.630 12.94 0.00 0.00 2.29
732 741 9.373603 CAAACATTGATTGAATCCACATACATT 57.626 29.630 2.26 0.00 0.00 2.71
733 742 9.947433 AAACATTGATTGAATCCACATACATTT 57.053 25.926 2.26 0.00 0.00 2.32
734 743 9.947433 AACATTGATTGAATCCACATACATTTT 57.053 25.926 2.26 0.00 0.00 1.82
812 821 3.151022 GGGGACCGCTGGAGAGAG 61.151 72.222 0.24 0.00 40.86 3.20
868 903 4.231718 AGACGTCAGAGAGAACAAAGTC 57.768 45.455 19.50 0.00 0.00 3.01
954 990 3.141488 CCCTCGTCTCCCTGTCCG 61.141 72.222 0.00 0.00 0.00 4.79
958 994 3.827898 CGTCTCCCTGTCCGCTCC 61.828 72.222 0.00 0.00 0.00 4.70
1008 1044 2.679092 CCCAGCAGAATGGAGGCA 59.321 61.111 0.00 0.00 43.57 4.75
1031 1067 2.442272 GCTCCCCCTCTCGCACTA 60.442 66.667 0.00 0.00 0.00 2.74
1185 1229 0.097325 TGTTTCGCCGTGTGTGTTTC 59.903 50.000 0.00 0.00 0.00 2.78
1193 1241 1.562575 CGTGTGTGTTTCGGGTAGGC 61.563 60.000 0.00 0.00 0.00 3.93
1214 1262 1.834822 GAGCAGGGCCTCGAGGTAT 60.835 63.158 31.43 15.58 37.57 2.73
1312 1540 7.547227 ACTCCATATTCAAATTGCTTTACACC 58.453 34.615 0.00 0.00 0.00 4.16
1355 1583 2.099592 GACTCTCTGGTCTCTGCATCAG 59.900 54.545 0.00 0.00 33.81 2.90
1431 1659 0.393808 GGGCCTCACCTAATGCGAAA 60.394 55.000 0.84 0.00 39.10 3.46
1435 1663 2.032178 GCCTCACCTAATGCGAAATCAC 59.968 50.000 0.00 0.00 0.00 3.06
1523 1761 7.510549 AAGATCAAGCAAAGTACAAAAGCTA 57.489 32.000 0.00 0.00 34.66 3.32
1530 1768 5.183904 AGCAAAGTACAAAAGCTAGGAATGG 59.816 40.000 0.00 0.00 33.06 3.16
1532 1770 4.301072 AGTACAAAAGCTAGGAATGGCA 57.699 40.909 0.00 0.00 0.00 4.92
1537 1775 0.328258 AAGCTAGGAATGGCACCGTT 59.672 50.000 0.00 0.00 0.00 4.44
1670 1911 4.098501 GCTTAATCCCAAATTCTCCACCAG 59.901 45.833 0.00 0.00 0.00 4.00
1868 2109 6.051717 CCTTACTTGTATGAATCTCTGGTGG 58.948 44.000 0.00 0.00 0.00 4.61
1869 2110 4.494091 ACTTGTATGAATCTCTGGTGGG 57.506 45.455 0.00 0.00 0.00 4.61
1870 2111 4.104086 ACTTGTATGAATCTCTGGTGGGA 58.896 43.478 0.00 0.00 0.00 4.37
1871 2112 4.723789 ACTTGTATGAATCTCTGGTGGGAT 59.276 41.667 0.00 0.00 0.00 3.85
1872 2113 5.905331 ACTTGTATGAATCTCTGGTGGGATA 59.095 40.000 0.00 0.00 0.00 2.59
1873 2114 6.560304 ACTTGTATGAATCTCTGGTGGGATAT 59.440 38.462 0.00 0.00 0.00 1.63
1874 2115 7.734865 ACTTGTATGAATCTCTGGTGGGATATA 59.265 37.037 0.00 0.00 0.00 0.86
1875 2116 7.724490 TGTATGAATCTCTGGTGGGATATAG 57.276 40.000 0.00 0.00 0.00 1.31
1876 2117 7.248976 TGTATGAATCTCTGGTGGGATATAGT 58.751 38.462 0.00 0.00 0.00 2.12
1877 2118 7.734865 TGTATGAATCTCTGGTGGGATATAGTT 59.265 37.037 0.00 0.00 0.00 2.24
1878 2119 7.639062 ATGAATCTCTGGTGGGATATAGTTT 57.361 36.000 0.00 0.00 0.00 2.66
1879 2120 8.742125 ATGAATCTCTGGTGGGATATAGTTTA 57.258 34.615 0.00 0.00 0.00 2.01
1880 2121 8.742125 TGAATCTCTGGTGGGATATAGTTTAT 57.258 34.615 0.00 0.00 0.00 1.40
1881 2122 9.170890 TGAATCTCTGGTGGGATATAGTTTATT 57.829 33.333 0.00 0.00 0.00 1.40
1882 2123 9.442047 GAATCTCTGGTGGGATATAGTTTATTG 57.558 37.037 0.00 0.00 0.00 1.90
1883 2124 7.316393 TCTCTGGTGGGATATAGTTTATTGG 57.684 40.000 0.00 0.00 0.00 3.16
1884 2125 7.079700 TCTCTGGTGGGATATAGTTTATTGGA 58.920 38.462 0.00 0.00 0.00 3.53
1885 2126 7.739444 TCTCTGGTGGGATATAGTTTATTGGAT 59.261 37.037 0.00 0.00 0.00 3.41
2045 2308 4.340381 GGCTATGTAGAAAGGACGTTAGGA 59.660 45.833 0.00 0.00 0.00 2.94
2051 2314 3.863041 AGAAAGGACGTTAGGATTCAGC 58.137 45.455 0.00 0.00 0.00 4.26
2057 2320 1.271379 ACGTTAGGATTCAGCACACGA 59.729 47.619 0.00 0.00 0.00 4.35
2129 2392 7.915397 ACATGTTGAAATGTTTGTTCTGTCTAC 59.085 33.333 0.00 0.00 37.50 2.59
2130 2393 7.384439 TGTTGAAATGTTTGTTCTGTCTACA 57.616 32.000 0.00 0.00 0.00 2.74
2156 2419 2.955660 TCAGTTTGTTTAGGGGCACTTG 59.044 45.455 0.00 0.00 0.00 3.16
2200 2463 7.829211 GCTGGGAAATAGGAATATAATGCTGTA 59.171 37.037 0.00 0.00 0.00 2.74
2332 2595 4.499696 CCTGTGATACAGCGTGTCATGATA 60.500 45.833 0.00 0.00 44.63 2.15
2339 2602 7.872483 TGATACAGCGTGTCATGATAAACATAT 59.128 33.333 0.00 0.00 37.46 1.78
2340 2603 9.353999 GATACAGCGTGTCATGATAAACATATA 57.646 33.333 0.00 0.00 37.46 0.86
2363 2626 2.954989 TGCACAAATGGCTCAGTAACAA 59.045 40.909 0.00 0.00 0.00 2.83
2403 2667 8.768501 ACACACTAATATGACTTCTCTATCCA 57.231 34.615 0.00 0.00 0.00 3.41
2407 2671 7.487509 CACTAATATGACTTCTCTATCCATGCG 59.512 40.741 0.00 0.00 0.00 4.73
2776 3041 4.311520 ACCGGAATTAAGTTAGCCCTTT 57.688 40.909 9.46 0.00 0.00 3.11
2815 3080 3.181397 CCAGAATGTTAAATGCGGCAAG 58.819 45.455 6.82 0.00 0.00 4.01
2899 3164 3.559242 GGCATGTGATACTGAGCTCTTTC 59.441 47.826 16.19 7.01 0.00 2.62
2960 3225 5.680619 TGTAGATGGTTGTGTTTCTGTTCT 58.319 37.500 0.00 0.00 0.00 3.01
2964 3229 4.214986 TGGTTGTGTTTCTGTTCTCTGA 57.785 40.909 0.00 0.00 0.00 3.27
2996 3309 8.840321 GGCATGCTGGATATAAATTATTACGAT 58.160 33.333 18.92 0.00 0.00 3.73
3017 3330 5.336451 CGATAATAGCCAGTATGCTACACCA 60.336 44.000 0.00 0.00 45.97 4.17
3025 3338 1.134189 GTATGCTACACCAGAACCCCC 60.134 57.143 0.00 0.00 0.00 5.40
3037 3350 3.052944 CCAGAACCCCCAAAAGGATGATA 60.053 47.826 0.00 0.00 38.24 2.15
3043 3356 3.897505 CCCCCAAAAGGATGATATGGTTC 59.102 47.826 0.00 0.00 38.24 3.62
3064 3381 6.321435 GGTTCCCTGTTTTAATATCCTGAAGG 59.679 42.308 0.00 0.00 0.00 3.46
3104 3421 8.865090 TGTTCTTTGTTATATGGTGGTTTTCAT 58.135 29.630 0.00 0.00 0.00 2.57
3128 3445 5.630121 ACTTGGTGTGTCCATTATTTGAGA 58.370 37.500 0.00 0.00 46.60 3.27
3361 3678 5.881923 AAAACCTGGTGTACTCAGACTAA 57.118 39.130 15.22 0.00 34.36 2.24
3585 3902 9.760077 CTTCCTAAACTTAGTTGACTTCTGTTA 57.240 33.333 0.00 0.00 0.00 2.41
3629 3946 5.404096 TGCTTCGTTCGTACAATCAATAGA 58.596 37.500 0.00 0.00 0.00 1.98
3631 3948 6.198403 TGCTTCGTTCGTACAATCAATAGATC 59.802 38.462 0.00 0.00 31.90 2.75
3659 3976 7.119116 ACTGCACTGTTGATAACATTCGAATTA 59.881 33.333 8.21 0.32 41.26 1.40
3668 3985 9.502145 TTGATAACATTCGAATTAAACTCATGC 57.498 29.630 8.21 0.00 0.00 4.06
3669 3986 7.850492 TGATAACATTCGAATTAAACTCATGCG 59.150 33.333 8.21 0.00 0.00 4.73
3670 3987 4.908736 ACATTCGAATTAAACTCATGCGG 58.091 39.130 8.21 0.00 0.00 5.69
3671 3988 4.394920 ACATTCGAATTAAACTCATGCGGT 59.605 37.500 8.21 0.00 0.00 5.68
3672 3989 4.593597 TTCGAATTAAACTCATGCGGTC 57.406 40.909 0.00 0.00 0.00 4.79
3673 3990 3.591023 TCGAATTAAACTCATGCGGTCA 58.409 40.909 0.00 0.00 0.00 4.02
3674 3991 4.188462 TCGAATTAAACTCATGCGGTCAT 58.812 39.130 0.00 0.00 0.00 3.06
3682 3999 1.885157 CATGCGGTCATGCCTGTTT 59.115 52.632 4.92 0.00 43.00 2.83
3756 4150 2.030457 ACTTGCTGTTTCTGACGTTTCG 59.970 45.455 0.00 0.00 0.00 3.46
4030 4463 2.745968 AGGGTGAACACAACAAATGGT 58.254 42.857 7.25 0.00 0.00 3.55
4080 4513 6.260936 CGATTGGAAGATTTGCAGGTACTTAT 59.739 38.462 0.00 0.00 34.60 1.73
4592 5028 2.333688 AGAAAGGAAAGGATAGCGCC 57.666 50.000 2.29 0.00 0.00 6.53
4609 5045 2.418197 GCGCCATACTTCTGGTGTCTTA 60.418 50.000 0.00 0.00 46.43 2.10
4744 5198 2.089887 CTGTGCAGCATTTGTGGGCA 62.090 55.000 0.00 0.00 0.00 5.36
4867 5323 2.036475 ACTGGCTGGTATCTTGATAGCG 59.964 50.000 13.05 9.79 35.31 4.26
4966 5422 3.052036 GGCAAGTCGTGAACGTTACTTA 58.948 45.455 12.53 0.00 35.25 2.24
5098 5576 9.992910 CCATTACGTTAAGTATTTACCCTTTTC 57.007 33.333 0.00 0.00 34.88 2.29
5271 5749 0.323629 CACCTGGCGGGAAGACTTTA 59.676 55.000 21.81 0.00 38.76 1.85
5310 5788 2.501723 GGCAGGACAAGGTGAGAGATTA 59.498 50.000 0.00 0.00 0.00 1.75
5328 5806 8.100135 AGAGATTAGAATGAGGGAGTTCAATT 57.900 34.615 0.00 0.00 0.00 2.32
5376 5855 1.136828 TGGGACCTTGTGCTAGTGTT 58.863 50.000 0.00 0.00 0.00 3.32
5501 5984 3.754965 TGTTATTCTTGACAGCCTGCTT 58.245 40.909 0.00 0.00 0.00 3.91
5708 6433 6.265196 TCCACTGAAAACTAGCATTTGTGAAT 59.735 34.615 10.93 0.00 0.00 2.57
5787 6512 8.816894 AGTTCTACCAGATCTGATCTTGTTAAA 58.183 33.333 24.11 16.98 37.58 1.52
5878 6604 6.785466 TGTGCTATTATACAGGGAAGGTATCA 59.215 38.462 0.00 0.00 33.68 2.15
5893 6619 6.995091 GGAAGGTATCAGCTCTTGACATAAAT 59.005 38.462 0.00 0.00 38.99 1.40
6144 6870 8.126700 GGACTTATGGTTAATGTTTTATCCACG 58.873 37.037 0.00 0.00 39.08 4.94
6156 6882 8.846943 ATGTTTTATCCACGCATATGATAAGA 57.153 30.769 6.97 0.00 33.76 2.10
6416 7142 1.428448 CAGACTTGCGTTGGAATCGA 58.572 50.000 0.00 0.00 0.00 3.59
6478 7204 1.876322 CTCCTTGATTCGGCCTCATC 58.124 55.000 0.00 2.27 0.00 2.92
6499 7225 3.987868 TCGTGAGATTCTTGCTGTTACAC 59.012 43.478 0.00 0.00 33.31 2.90
6560 7286 9.624373 ACAGCATCTAAGATTACTTTCAATGAT 57.376 29.630 0.00 0.00 37.53 2.45
6672 7398 1.271856 TGTTCAGAGGCATCCGGTAA 58.728 50.000 0.00 0.00 0.00 2.85
6684 7410 5.542635 AGGCATCCGGTAAGAGTTCATATTA 59.457 40.000 0.00 0.00 0.00 0.98
6716 7457 5.050769 CCATCGATCCTTCACAAAAGATACG 60.051 44.000 0.00 0.00 0.00 3.06
6849 7617 2.910977 ACCAAAATTCTACTCCCTCCGT 59.089 45.455 0.00 0.00 0.00 4.69
6866 7634 5.054477 CCTCCGTCCACGACAATAATTATT 58.946 41.667 4.81 4.81 43.02 1.40
6884 7652 5.750352 TTATTGAACGGAGGGAGTAGTTT 57.250 39.130 0.00 0.00 0.00 2.66
6906 7674 8.515414 AGTTTTCTTTTAGTCATAGCATGAACC 58.485 33.333 0.00 0.00 41.69 3.62
6910 7678 6.312918 TCTTTTAGTCATAGCATGAACCGAAC 59.687 38.462 0.00 0.00 41.69 3.95
6913 7681 4.184629 AGTCATAGCATGAACCGAACTTC 58.815 43.478 0.00 0.00 41.69 3.01
6930 7698 5.297776 CGAACTTCAATCCTTATCCAGCAAT 59.702 40.000 0.00 0.00 0.00 3.56
6943 7711 0.455633 CAGCAATTGGAAGTCGCTGC 60.456 55.000 7.72 0.00 43.09 5.25
6945 7713 1.865788 GCAATTGGAAGTCGCTGCCA 61.866 55.000 7.72 2.72 37.41 4.92
6973 7743 5.511545 CCACTATATGTTAGCCCTCAGTTCC 60.512 48.000 0.00 0.00 0.00 3.62
7010 7780 3.423539 AGCTGCACATTTAACTCTCCA 57.576 42.857 1.02 0.00 0.00 3.86
7012 7782 4.144297 AGCTGCACATTTAACTCTCCAAA 58.856 39.130 1.02 0.00 0.00 3.28
7053 7823 7.145932 AGCATCCTGTAACACTTGTTTTATC 57.854 36.000 0.00 0.00 39.31 1.75
7066 7836 8.612619 ACACTTGTTTTATCTGTAACTGAACAG 58.387 33.333 8.09 8.09 46.78 3.16
7083 7853 8.954950 ACTGAACAGTCTATTATCATTTCTGG 57.045 34.615 1.32 0.00 36.92 3.86
7126 7899 6.533730 TGTTCACTGTCCAAATCAGTTCTAT 58.466 36.000 0.00 0.00 43.14 1.98
7128 7901 7.819415 TGTTCACTGTCCAAATCAGTTCTATAG 59.181 37.037 0.00 0.00 43.14 1.31
7161 7935 9.887406 AATCAAAAGAATGCAATGAAACATTTC 57.113 25.926 0.00 0.00 36.65 2.17
7162 7936 7.565848 TCAAAAGAATGCAATGAAACATTTCG 58.434 30.769 0.00 0.00 40.01 3.46
7225 8036 7.365497 ACATCCACTGACATCTAATCATGTA 57.635 36.000 0.00 0.00 37.11 2.29
7228 8039 7.043961 TCCACTGACATCTAATCATGTAGTC 57.956 40.000 0.00 0.00 37.11 2.59
7416 8227 5.665812 ACTCCCTACAATTAGGTGAGCATAA 59.334 40.000 12.51 0.00 43.41 1.90
7428 8243 5.574188 AGGTGAGCATAAGAAGAACCAAAT 58.426 37.500 0.00 0.00 0.00 2.32
7511 8327 7.362662 TGACACATGCTGTAAAAATTCTCTTC 58.637 34.615 0.00 0.00 31.03 2.87
7534 8350 7.850935 TCCCTCTTACAGTTTCTTAGAAGAA 57.149 36.000 0.46 0.46 42.91 2.52
7604 8420 8.491152 CATGCAGTAAGTTGTATAATAGACAGC 58.509 37.037 0.00 0.00 0.00 4.40
7630 8446 3.262915 GCTGAGGTCATCCTTATAGGCAT 59.737 47.826 0.00 0.00 45.24 4.40
7683 8499 6.915544 ATAATGTGTGTTGTGAGCTAGATG 57.084 37.500 0.00 0.00 0.00 2.90
7712 8528 3.958798 GAGTTGTACCTGCTGGATACCTA 59.041 47.826 17.64 0.00 37.04 3.08
7801 8619 4.627467 GTCTTGCACAGTACCAAGTGATAG 59.373 45.833 13.11 9.27 39.47 2.08
7826 8644 9.593565 AGTCTCAAGGTAGATGATCATACATAA 57.406 33.333 8.54 0.00 0.00 1.90
7880 8698 8.598041 AGTGTACTTCAAGAGAACCATAATTCT 58.402 33.333 0.00 0.00 41.74 2.40
7938 8760 4.996788 AGGACCTTACACTATTGGTACG 57.003 45.455 0.00 0.00 38.40 3.67
7944 8766 4.097437 CCTTACACTATTGGTACGAGCAGA 59.903 45.833 0.00 0.00 0.00 4.26
8015 8837 1.941668 GCCTTTGTCCTTCCTCACGAG 60.942 57.143 0.00 0.00 0.00 4.18
8034 8856 3.058432 CGAGCATTGCTTCATAGAATGGG 60.058 47.826 13.35 0.00 39.88 4.00
8196 9018 4.953667 TCACATATTCTGGAGCTGATGAC 58.046 43.478 0.00 0.00 0.00 3.06
8240 9062 5.500931 GCTCGTATCTCTTGGATTCGTTTTG 60.501 44.000 0.00 0.00 42.87 2.44
8253 9075 6.095720 TGGATTCGTTTTGTTCACTTACCTTT 59.904 34.615 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.461032 AAAAATTAATGTGACGGAAGCCA 57.539 34.783 0.00 0.00 0.00 4.75
34 35 8.079203 CCACTCTGATAGTACATCATACTCAAC 58.921 40.741 7.98 0.00 35.76 3.18
47 48 4.222810 ACACATGTTGCCACTCTGATAGTA 59.777 41.667 0.00 0.00 35.76 1.82
48 49 3.008375 ACACATGTTGCCACTCTGATAGT 59.992 43.478 0.00 0.00 39.81 2.12
49 50 3.603532 ACACATGTTGCCACTCTGATAG 58.396 45.455 0.00 0.00 0.00 2.08
67 68 5.163437 ACTCCCGAGACCTTGATTAATACAC 60.163 44.000 0.00 0.00 0.00 2.90
86 91 1.406205 GCTCACTTTCCTGCTACTCCC 60.406 57.143 0.00 0.00 0.00 4.30
87 92 1.552792 AGCTCACTTTCCTGCTACTCC 59.447 52.381 0.00 0.00 33.64 3.85
144 149 0.884704 AGTCCAACCGTGATGTGCAC 60.885 55.000 10.75 10.75 44.21 4.57
145 150 0.884259 CAGTCCAACCGTGATGTGCA 60.884 55.000 0.00 0.00 0.00 4.57
146 151 0.884704 ACAGTCCAACCGTGATGTGC 60.885 55.000 0.00 0.00 0.00 4.57
147 152 1.593196 AACAGTCCAACCGTGATGTG 58.407 50.000 0.00 0.00 0.00 3.21
148 153 2.341846 AAACAGTCCAACCGTGATGT 57.658 45.000 0.00 0.00 0.00 3.06
149 154 2.858260 GCAAAACAGTCCAACCGTGATG 60.858 50.000 0.00 0.00 0.00 3.07
150 155 1.336755 GCAAAACAGTCCAACCGTGAT 59.663 47.619 0.00 0.00 0.00 3.06
151 156 0.736053 GCAAAACAGTCCAACCGTGA 59.264 50.000 0.00 0.00 0.00 4.35
152 157 0.453793 TGCAAAACAGTCCAACCGTG 59.546 50.000 0.00 0.00 0.00 4.94
153 158 0.738389 CTGCAAAACAGTCCAACCGT 59.262 50.000 0.00 0.00 41.86 4.83
154 159 3.549997 CTGCAAAACAGTCCAACCG 57.450 52.632 0.00 0.00 41.86 4.44
187 192 9.151471 GCAGTTGACACTAACTAGAAAATATGA 57.849 33.333 0.00 0.00 38.78 2.15
188 193 8.935844 TGCAGTTGACACTAACTAGAAAATATG 58.064 33.333 0.00 0.00 38.78 1.78
189 194 9.502091 TTGCAGTTGACACTAACTAGAAAATAT 57.498 29.630 0.00 0.00 38.78 1.28
191 196 7.282224 TGTTGCAGTTGACACTAACTAGAAAAT 59.718 33.333 0.00 0.00 38.78 1.82
192 197 6.596106 TGTTGCAGTTGACACTAACTAGAAAA 59.404 34.615 0.00 0.00 38.78 2.29
194 199 5.666462 TGTTGCAGTTGACACTAACTAGAA 58.334 37.500 0.00 0.00 38.78 2.10
196 201 5.289595 TCTGTTGCAGTTGACACTAACTAG 58.710 41.667 0.00 0.00 38.78 2.57
197 202 5.270893 TCTGTTGCAGTTGACACTAACTA 57.729 39.130 0.00 0.00 38.78 2.24
198 203 4.137116 TCTGTTGCAGTTGACACTAACT 57.863 40.909 0.00 0.00 41.37 2.24
199 204 4.875544 TTCTGTTGCAGTTGACACTAAC 57.124 40.909 0.00 0.00 32.61 2.34
200 205 5.676079 GCTTTTCTGTTGCAGTTGACACTAA 60.676 40.000 0.00 0.00 32.61 2.24
201 206 4.201910 GCTTTTCTGTTGCAGTTGACACTA 60.202 41.667 0.00 0.00 32.61 2.74
202 207 3.428045 GCTTTTCTGTTGCAGTTGACACT 60.428 43.478 0.00 0.00 32.61 3.55
210 215 1.372128 GCCCGCTTTTCTGTTGCAG 60.372 57.895 0.00 0.00 0.00 4.41
213 218 0.597568 TGATGCCCGCTTTTCTGTTG 59.402 50.000 0.00 0.00 0.00 3.33
228 233 0.306840 CCATACGCTTGCAGCTGATG 59.693 55.000 20.43 10.09 39.60 3.07
245 250 3.882888 GCCGTATCAAATTCCATCTTCCA 59.117 43.478 0.00 0.00 0.00 3.53
246 251 3.882888 TGCCGTATCAAATTCCATCTTCC 59.117 43.478 0.00 0.00 0.00 3.46
294 299 8.958506 ACTGTACTACTTGATTATTTCTCGTCT 58.041 33.333 0.00 0.00 0.00 4.18
295 300 9.224058 GACTGTACTACTTGATTATTTCTCGTC 57.776 37.037 0.00 0.00 0.00 4.20
296 301 8.737175 TGACTGTACTACTTGATTATTTCTCGT 58.263 33.333 0.00 0.00 0.00 4.18
297 302 9.569167 TTGACTGTACTACTTGATTATTTCTCG 57.431 33.333 0.00 0.00 0.00 4.04
305 310 8.091449 CCTTCTCTTTGACTGTACTACTTGATT 58.909 37.037 0.00 0.00 0.00 2.57
306 311 7.451877 TCCTTCTCTTTGACTGTACTACTTGAT 59.548 37.037 0.00 0.00 0.00 2.57
307 312 6.776116 TCCTTCTCTTTGACTGTACTACTTGA 59.224 38.462 0.00 0.00 0.00 3.02
308 313 6.982852 TCCTTCTCTTTGACTGTACTACTTG 58.017 40.000 0.00 0.00 0.00 3.16
309 314 7.598759 TTCCTTCTCTTTGACTGTACTACTT 57.401 36.000 0.00 0.00 0.00 2.24
310 315 7.310113 CCATTCCTTCTCTTTGACTGTACTACT 60.310 40.741 0.00 0.00 0.00 2.57
311 316 6.814146 CCATTCCTTCTCTTTGACTGTACTAC 59.186 42.308 0.00 0.00 0.00 2.73
312 317 6.724441 TCCATTCCTTCTCTTTGACTGTACTA 59.276 38.462 0.00 0.00 0.00 1.82
313 318 5.544176 TCCATTCCTTCTCTTTGACTGTACT 59.456 40.000 0.00 0.00 0.00 2.73
314 319 5.794894 TCCATTCCTTCTCTTTGACTGTAC 58.205 41.667 0.00 0.00 0.00 2.90
315 320 6.213397 TCATCCATTCCTTCTCTTTGACTGTA 59.787 38.462 0.00 0.00 0.00 2.74
316 321 4.982241 TCCATTCCTTCTCTTTGACTGT 57.018 40.909 0.00 0.00 0.00 3.55
317 322 5.494724 TCATCCATTCCTTCTCTTTGACTG 58.505 41.667 0.00 0.00 0.00 3.51
326 331 9.213777 TGTAGTTTAGTATCATCCATTCCTTCT 57.786 33.333 0.00 0.00 0.00 2.85
340 345 6.127026 CCTCTTCCCTGCTTGTAGTTTAGTAT 60.127 42.308 0.00 0.00 0.00 2.12
341 346 5.187186 CCTCTTCCCTGCTTGTAGTTTAGTA 59.813 44.000 0.00 0.00 0.00 1.82
343 352 4.508662 CCTCTTCCCTGCTTGTAGTTTAG 58.491 47.826 0.00 0.00 0.00 1.85
346 355 1.003696 GCCTCTTCCCTGCTTGTAGTT 59.996 52.381 0.00 0.00 0.00 2.24
348 357 0.615331 TGCCTCTTCCCTGCTTGTAG 59.385 55.000 0.00 0.00 0.00 2.74
353 362 2.932194 TGCTGCCTCTTCCCTGCT 60.932 61.111 0.00 0.00 0.00 4.24
364 373 2.588314 CTCTCCATCGCTGCTGCC 60.588 66.667 10.24 0.00 35.36 4.85
367 376 1.674764 CCAGTCTCTCCATCGCTGCT 61.675 60.000 0.00 0.00 0.00 4.24
370 379 1.326213 CCACCAGTCTCTCCATCGCT 61.326 60.000 0.00 0.00 0.00 4.93
371 380 1.142748 CCACCAGTCTCTCCATCGC 59.857 63.158 0.00 0.00 0.00 4.58
372 381 1.142748 GCCACCAGTCTCTCCATCG 59.857 63.158 0.00 0.00 0.00 3.84
375 384 2.607750 GGGCCACCAGTCTCTCCA 60.608 66.667 4.39 0.00 36.50 3.86
376 385 2.607750 TGGGCCACCAGTCTCTCC 60.608 66.667 0.00 0.00 43.37 3.71
397 406 2.028125 ATATCACGGCCGTCCCACTG 62.028 60.000 31.80 17.01 0.00 3.66
398 407 0.468585 TATATCACGGCCGTCCCACT 60.469 55.000 31.80 14.75 0.00 4.00
399 408 0.038526 CTATATCACGGCCGTCCCAC 60.039 60.000 31.80 0.00 0.00 4.61
400 409 0.178984 TCTATATCACGGCCGTCCCA 60.179 55.000 31.80 16.27 0.00 4.37
401 410 0.526662 CTCTATATCACGGCCGTCCC 59.473 60.000 31.80 0.00 0.00 4.46
402 411 1.469308 CTCTCTATATCACGGCCGTCC 59.531 57.143 31.80 0.00 0.00 4.79
403 412 2.424557 TCTCTCTATATCACGGCCGTC 58.575 52.381 31.80 0.00 0.00 4.79
404 413 2.563261 TCTCTCTATATCACGGCCGT 57.437 50.000 28.70 28.70 0.00 5.68
405 414 3.075148 TCTTCTCTCTATATCACGGCCG 58.925 50.000 26.86 26.86 0.00 6.13
406 415 3.821600 TGTCTTCTCTCTATATCACGGCC 59.178 47.826 0.00 0.00 0.00 6.13
407 416 4.614993 GCTGTCTTCTCTCTATATCACGGC 60.615 50.000 0.00 0.00 0.00 5.68
408 417 4.517075 TGCTGTCTTCTCTCTATATCACGG 59.483 45.833 0.00 0.00 0.00 4.94
409 418 5.008118 TGTGCTGTCTTCTCTCTATATCACG 59.992 44.000 0.00 0.00 0.00 4.35
410 419 6.205784 GTGTGCTGTCTTCTCTCTATATCAC 58.794 44.000 0.00 0.00 0.00 3.06
411 420 5.008118 CGTGTGCTGTCTTCTCTCTATATCA 59.992 44.000 0.00 0.00 0.00 2.15
412 421 5.448438 CGTGTGCTGTCTTCTCTCTATATC 58.552 45.833 0.00 0.00 0.00 1.63
413 422 4.277174 CCGTGTGCTGTCTTCTCTCTATAT 59.723 45.833 0.00 0.00 0.00 0.86
414 423 3.628032 CCGTGTGCTGTCTTCTCTCTATA 59.372 47.826 0.00 0.00 0.00 1.31
415 424 2.425312 CCGTGTGCTGTCTTCTCTCTAT 59.575 50.000 0.00 0.00 0.00 1.98
416 425 1.813178 CCGTGTGCTGTCTTCTCTCTA 59.187 52.381 0.00 0.00 0.00 2.43
417 426 0.600557 CCGTGTGCTGTCTTCTCTCT 59.399 55.000 0.00 0.00 0.00 3.10
418 427 1.011451 GCCGTGTGCTGTCTTCTCTC 61.011 60.000 0.00 0.00 36.87 3.20
419 428 1.005630 GCCGTGTGCTGTCTTCTCT 60.006 57.895 0.00 0.00 36.87 3.10
420 429 2.029844 GGCCGTGTGCTGTCTTCTC 61.030 63.158 0.00 0.00 40.92 2.87
421 430 2.031163 GGCCGTGTGCTGTCTTCT 59.969 61.111 0.00 0.00 40.92 2.85
422 431 3.050275 GGGCCGTGTGCTGTCTTC 61.050 66.667 0.00 0.00 40.92 2.87
423 432 3.120086 AAGGGCCGTGTGCTGTCTT 62.120 57.895 0.00 0.00 40.92 3.01
424 433 3.560251 AAGGGCCGTGTGCTGTCT 61.560 61.111 0.00 0.00 40.92 3.41
425 434 3.357079 CAAGGGCCGTGTGCTGTC 61.357 66.667 11.63 0.00 40.92 3.51
441 450 2.036571 CCAATCTGTCGCTGCTGCA 61.037 57.895 16.29 0.88 39.64 4.41
449 458 9.190858 TCATGAATTTTAAAAACCAATCTGTCG 57.809 29.630 4.44 0.00 0.00 4.35
470 479 8.404000 CCACAAAATTCAAAAACCAATTCATGA 58.596 29.630 0.00 0.00 0.00 3.07
471 480 8.404000 TCCACAAAATTCAAAAACCAATTCATG 58.596 29.630 0.00 0.00 0.00 3.07
472 481 8.404765 GTCCACAAAATTCAAAAACCAATTCAT 58.595 29.630 0.00 0.00 0.00 2.57
473 482 7.391554 TGTCCACAAAATTCAAAAACCAATTCA 59.608 29.630 0.00 0.00 0.00 2.57
474 483 7.756558 TGTCCACAAAATTCAAAAACCAATTC 58.243 30.769 0.00 0.00 0.00 2.17
475 484 7.693969 TGTCCACAAAATTCAAAAACCAATT 57.306 28.000 0.00 0.00 0.00 2.32
476 485 7.878547 ATGTCCACAAAATTCAAAAACCAAT 57.121 28.000 0.00 0.00 0.00 3.16
477 486 7.693969 AATGTCCACAAAATTCAAAAACCAA 57.306 28.000 0.00 0.00 0.00 3.67
478 487 7.693969 AAATGTCCACAAAATTCAAAAACCA 57.306 28.000 0.00 0.00 0.00 3.67
479 488 8.978564 AAAAATGTCCACAAAATTCAAAAACC 57.021 26.923 0.00 0.00 0.00 3.27
491 500 9.658799 TTCATGAACTTTTAAAAATGTCCACAA 57.341 25.926 3.38 0.00 0.00 3.33
493 502 9.092876 TGTTCATGAACTTTTAAAAATGTCCAC 57.907 29.630 32.57 7.25 41.67 4.02
543 552 9.757227 ATTTCGTAAAAATGTTCAGGAAATCAA 57.243 25.926 0.00 0.00 29.61 2.57
544 553 9.405587 GATTTCGTAAAAATGTTCAGGAAATCA 57.594 29.630 16.92 0.00 43.69 2.57
545 554 8.575454 CGATTTCGTAAAAATGTTCAGGAAATC 58.425 33.333 13.63 13.63 42.14 2.17
546 555 8.447787 CGATTTCGTAAAAATGTTCAGGAAAT 57.552 30.769 0.00 0.00 36.05 2.17
547 556 7.845617 CGATTTCGTAAAAATGTTCAGGAAA 57.154 32.000 0.00 0.00 34.11 3.13
564 573 7.148733 ACTTTCAAAAATGTTCACGATTTCG 57.851 32.000 0.00 0.00 46.33 3.46
565 574 9.408731 GAAACTTTCAAAAATGTTCACGATTTC 57.591 29.630 0.00 0.00 33.10 2.17
566 575 8.930760 TGAAACTTTCAAAAATGTTCACGATTT 58.069 25.926 1.47 0.00 36.59 2.17
569 578 6.863645 TGTGAAACTTTCAAAAATGTTCACGA 59.136 30.769 5.76 8.48 42.15 4.35
570 579 7.043454 TGTGAAACTTTCAAAAATGTTCACG 57.957 32.000 5.76 0.00 42.15 4.35
571 580 9.101971 GTTTGTGAAACTTTCAAAAATGTTCAC 57.898 29.630 18.69 14.93 45.68 3.18
572 581 8.830580 TGTTTGTGAAACTTTCAAAAATGTTCA 58.169 25.926 18.69 11.46 45.68 3.18
641 650 6.882656 TGGGAAATCAATGTTGAGTTTCAAA 58.117 32.000 14.10 2.02 44.40 2.69
642 651 6.477053 TGGGAAATCAATGTTGAGTTTCAA 57.523 33.333 14.10 2.54 44.40 2.69
644 653 7.601856 TGTATGGGAAATCAATGTTGAGTTTC 58.398 34.615 9.44 7.61 44.40 2.78
645 654 7.537596 TGTATGGGAAATCAATGTTGAGTTT 57.462 32.000 9.44 6.44 44.40 2.66
646 655 7.722949 ATGTATGGGAAATCAATGTTGAGTT 57.277 32.000 8.02 8.02 46.67 3.01
647 656 7.722949 AATGTATGGGAAATCAATGTTGAGT 57.277 32.000 1.65 0.00 41.08 3.41
648 657 9.439500 AAAAATGTATGGGAAATCAATGTTGAG 57.561 29.630 1.65 0.00 41.08 3.02
649 658 9.217278 CAAAAATGTATGGGAAATCAATGTTGA 57.783 29.630 0.00 0.00 42.14 3.18
651 660 9.571816 AACAAAAATGTATGGGAAATCAATGTT 57.428 25.926 0.00 0.00 0.00 2.71
652 661 9.218440 GAACAAAAATGTATGGGAAATCAATGT 57.782 29.630 0.00 0.00 0.00 2.71
653 662 9.217278 TGAACAAAAATGTATGGGAAATCAATG 57.783 29.630 0.00 0.00 0.00 2.82
654 663 9.790344 TTGAACAAAAATGTATGGGAAATCAAT 57.210 25.926 0.00 0.00 0.00 2.57
657 666 9.877137 GTTTTGAACAAAAATGTATGGGAAATC 57.123 29.630 13.13 0.00 41.37 2.17
658 667 8.845227 GGTTTTGAACAAAAATGTATGGGAAAT 58.155 29.630 13.13 0.00 41.37 2.17
659 668 7.011482 CGGTTTTGAACAAAAATGTATGGGAAA 59.989 33.333 13.13 0.00 41.37 3.13
660 669 6.480320 CGGTTTTGAACAAAAATGTATGGGAA 59.520 34.615 13.13 0.00 41.37 3.97
661 670 5.986135 CGGTTTTGAACAAAAATGTATGGGA 59.014 36.000 13.13 0.00 41.37 4.37
662 671 5.755861 ACGGTTTTGAACAAAAATGTATGGG 59.244 36.000 13.13 2.15 41.37 4.00
663 672 6.477033 TCACGGTTTTGAACAAAAATGTATGG 59.523 34.615 13.13 5.39 41.37 2.74
664 673 7.456684 TCACGGTTTTGAACAAAAATGTATG 57.543 32.000 13.13 8.59 41.37 2.39
665 674 8.655651 ATTCACGGTTTTGAACAAAAATGTAT 57.344 26.923 13.13 9.15 41.37 2.29
666 675 9.751542 ATATTCACGGTTTTGAACAAAAATGTA 57.248 25.926 13.13 7.67 41.37 2.29
667 676 6.976636 ATTCACGGTTTTGAACAAAAATGT 57.023 29.167 13.13 11.60 41.37 2.71
697 706 8.991026 GGATTCAATCAATGTTTGTGATTTTGA 58.009 29.630 0.00 0.00 41.82 2.69
698 707 8.775527 TGGATTCAATCAATGTTTGTGATTTTG 58.224 29.630 0.00 0.00 41.82 2.44
699 708 8.776470 GTGGATTCAATCAATGTTTGTGATTTT 58.224 29.630 0.00 0.00 41.82 1.82
700 709 7.932491 TGTGGATTCAATCAATGTTTGTGATTT 59.068 29.630 0.00 0.00 41.82 2.17
701 710 7.443477 TGTGGATTCAATCAATGTTTGTGATT 58.557 30.769 0.00 0.00 44.63 2.57
702 711 6.995364 TGTGGATTCAATCAATGTTTGTGAT 58.005 32.000 0.00 1.15 37.31 3.06
703 712 6.402456 TGTGGATTCAATCAATGTTTGTGA 57.598 33.333 0.00 0.00 0.00 3.58
704 713 7.813627 TGTATGTGGATTCAATCAATGTTTGTG 59.186 33.333 0.00 0.00 0.00 3.33
705 714 7.894708 TGTATGTGGATTCAATCAATGTTTGT 58.105 30.769 0.00 0.00 0.00 2.83
706 715 8.936070 ATGTATGTGGATTCAATCAATGTTTG 57.064 30.769 0.00 0.00 0.00 2.93
707 716 9.947433 AAATGTATGTGGATTCAATCAATGTTT 57.053 25.926 0.00 0.00 0.00 2.83
708 717 9.947433 AAAATGTATGTGGATTCAATCAATGTT 57.053 25.926 0.00 0.00 0.00 2.71
768 777 9.771534 TCGAAAAGTTCCAAATTTCCAAATAAT 57.228 25.926 0.00 0.00 31.03 1.28
769 778 9.255304 CTCGAAAAGTTCCAAATTTCCAAATAA 57.745 29.630 0.00 0.00 31.03 1.40
770 779 7.870445 CCTCGAAAAGTTCCAAATTTCCAAATA 59.130 33.333 0.00 0.00 31.03 1.40
771 780 6.705825 CCTCGAAAAGTTCCAAATTTCCAAAT 59.294 34.615 0.00 0.00 31.03 2.32
772 781 6.045955 CCTCGAAAAGTTCCAAATTTCCAAA 58.954 36.000 0.00 0.00 31.03 3.28
773 782 5.452636 CCCTCGAAAAGTTCCAAATTTCCAA 60.453 40.000 0.00 0.00 31.03 3.53
774 783 4.038642 CCCTCGAAAAGTTCCAAATTTCCA 59.961 41.667 0.00 0.00 31.03 3.53
775 784 4.556233 CCCTCGAAAAGTTCCAAATTTCC 58.444 43.478 0.00 0.00 31.03 3.13
776 785 4.279922 TCCCCTCGAAAAGTTCCAAATTTC 59.720 41.667 0.00 0.00 0.00 2.17
777 786 4.038763 GTCCCCTCGAAAAGTTCCAAATTT 59.961 41.667 0.00 0.00 0.00 1.82
778 787 3.572682 GTCCCCTCGAAAAGTTCCAAATT 59.427 43.478 0.00 0.00 0.00 1.82
779 788 3.154710 GTCCCCTCGAAAAGTTCCAAAT 58.845 45.455 0.00 0.00 0.00 2.32
780 789 2.578786 GTCCCCTCGAAAAGTTCCAAA 58.421 47.619 0.00 0.00 0.00 3.28
781 790 1.202842 GGTCCCCTCGAAAAGTTCCAA 60.203 52.381 0.00 0.00 0.00 3.53
782 791 0.399075 GGTCCCCTCGAAAAGTTCCA 59.601 55.000 0.00 0.00 0.00 3.53
783 792 0.672711 CGGTCCCCTCGAAAAGTTCC 60.673 60.000 0.00 0.00 0.00 3.62
784 793 1.296755 GCGGTCCCCTCGAAAAGTTC 61.297 60.000 0.00 0.00 0.00 3.01
785 794 1.302271 GCGGTCCCCTCGAAAAGTT 60.302 57.895 0.00 0.00 0.00 2.66
786 795 2.214920 AGCGGTCCCCTCGAAAAGT 61.215 57.895 0.00 0.00 0.00 2.66
787 796 1.741770 CAGCGGTCCCCTCGAAAAG 60.742 63.158 0.00 0.00 0.00 2.27
820 829 9.342308 ACTCAATACAAATTCTCTTTGTCTCAA 57.658 29.630 6.61 0.00 42.10 3.02
821 830 8.908786 ACTCAATACAAATTCTCTTTGTCTCA 57.091 30.769 6.61 0.00 42.10 3.27
826 835 8.926710 ACGTCTACTCAATACAAATTCTCTTTG 58.073 33.333 0.00 0.00 35.64 2.77
827 836 9.141400 GACGTCTACTCAATACAAATTCTCTTT 57.859 33.333 8.70 0.00 0.00 2.52
828 837 8.304596 TGACGTCTACTCAATACAAATTCTCTT 58.695 33.333 17.92 0.00 0.00 2.85
829 838 7.827701 TGACGTCTACTCAATACAAATTCTCT 58.172 34.615 17.92 0.00 0.00 3.10
830 839 7.968956 TCTGACGTCTACTCAATACAAATTCTC 59.031 37.037 17.92 0.00 0.00 2.87
831 840 7.827701 TCTGACGTCTACTCAATACAAATTCT 58.172 34.615 17.92 0.00 0.00 2.40
832 841 7.968956 TCTCTGACGTCTACTCAATACAAATTC 59.031 37.037 17.92 0.00 0.00 2.17
849 884 2.693591 TGGACTTTGTTCTCTCTGACGT 59.306 45.455 0.00 0.00 0.00 4.34
868 903 3.612247 CTCGTGGAGGCCCTGTTGG 62.612 68.421 0.00 0.00 37.09 3.77
896 931 4.476479 AGAGGATAATATGAAGATGGGCCC 59.524 45.833 17.59 17.59 0.00 5.80
1008 1044 3.403558 GAGAGGGGGAGCGCCTTT 61.404 66.667 2.29 0.00 46.94 3.11
1134 1170 2.659016 CCGAGCAGAACAGCCTGA 59.341 61.111 0.00 0.00 36.29 3.86
1185 1229 3.854669 CCTGCTCCTGCCTACCCG 61.855 72.222 0.00 0.00 38.71 5.28
1193 1241 3.847602 CTCGAGGCCCTGCTCCTG 61.848 72.222 3.91 0.00 33.24 3.86
1269 1497 5.989477 TGGAGTAACAAATGTCAGGGATAG 58.011 41.667 0.00 0.00 0.00 2.08
1312 1540 6.151144 AGTCAACCCATTTTTCGGATAAGAAG 59.849 38.462 0.00 0.00 0.00 2.85
1318 1546 4.010349 GAGAGTCAACCCATTTTTCGGAT 58.990 43.478 0.00 0.00 0.00 4.18
1431 1659 4.343526 AGAAAGATATGACCAGAGCGTGAT 59.656 41.667 0.00 0.00 0.00 3.06
1435 1663 6.428385 AAAAAGAAAGATATGACCAGAGCG 57.572 37.500 0.00 0.00 0.00 5.03
1523 1761 1.883926 GTTGTTAACGGTGCCATTCCT 59.116 47.619 0.26 0.00 0.00 3.36
1530 1768 2.747446 AGGATCATGTTGTTAACGGTGC 59.253 45.455 0.26 0.00 0.00 5.01
1532 1770 3.606687 GGAGGATCATGTTGTTAACGGT 58.393 45.455 0.26 0.00 36.25 4.83
1537 1775 9.615660 ATTATACTAGGGAGGATCATGTTGTTA 57.384 33.333 0.00 0.00 36.25 2.41
1574 1815 8.481314 ACAATCAGCTTAACATAGAGATGAAGA 58.519 33.333 0.00 0.00 41.09 2.87
1670 1911 1.357991 GCGCTCTTCACCTGCTCTTC 61.358 60.000 0.00 0.00 0.00 2.87
1690 1931 6.412072 GCAACTTAGCTACATTATTTCAAGCG 59.588 38.462 0.00 0.00 38.23 4.68
2045 2308 2.503331 TCCAAATGTCGTGTGCTGAAT 58.497 42.857 0.00 0.00 0.00 2.57
2051 2314 2.160219 CCTGTCATCCAAATGTCGTGTG 59.840 50.000 0.00 0.00 34.32 3.82
2057 2320 7.392766 TCTTATATCCCTGTCATCCAAATGT 57.607 36.000 0.00 0.00 34.32 2.71
2129 2392 5.236263 GTGCCCCTAAACAAACTGAAATTTG 59.764 40.000 0.00 0.00 43.81 2.32
2130 2393 5.130311 AGTGCCCCTAAACAAACTGAAATTT 59.870 36.000 0.00 0.00 0.00 1.82
2156 2419 3.181487 CCAGCAATAACCCAACATAGTGC 60.181 47.826 0.00 0.00 41.88 4.40
2269 2532 8.474006 AAAGTGAATAAACAAAACTGACAACC 57.526 30.769 0.00 0.00 0.00 3.77
2321 2584 8.281893 TGTGCAATATATGTTTATCATGACACG 58.718 33.333 0.00 0.00 37.91 4.49
2332 2595 6.876155 TGAGCCATTTGTGCAATATATGTTT 58.124 32.000 0.00 0.00 0.00 2.83
2339 2602 4.764308 TGTTACTGAGCCATTTGTGCAATA 59.236 37.500 0.00 0.00 0.00 1.90
2340 2603 3.573538 TGTTACTGAGCCATTTGTGCAAT 59.426 39.130 0.00 0.00 0.00 3.56
2387 2651 5.416013 CCTACGCATGGATAGAGAAGTCATA 59.584 44.000 0.00 0.00 0.00 2.15
2395 2659 5.139435 TGAATTCCTACGCATGGATAGAG 57.861 43.478 2.27 0.00 33.09 2.43
2401 2665 3.016736 AGGTTTGAATTCCTACGCATGG 58.983 45.455 2.27 0.00 31.66 3.66
2403 2667 4.396166 CAGAAGGTTTGAATTCCTACGCAT 59.604 41.667 2.27 0.00 33.27 4.73
2407 2671 7.826744 AGAGAATCAGAAGGTTTGAATTCCTAC 59.173 37.037 2.27 0.81 37.82 3.18
2757 3022 5.638596 AACAAAGGGCTAACTTAATTCCG 57.361 39.130 0.00 0.00 0.00 4.30
2862 3127 4.128643 CACATGCCCACATTTGTTCTTTT 58.871 39.130 0.00 0.00 32.87 2.27
2960 3225 1.839354 TCCAGCATGCCAACTATCAGA 59.161 47.619 15.66 0.00 31.97 3.27
2964 3229 9.705103 ATAATTTATATCCAGCATGCCAACTAT 57.295 29.630 15.66 9.55 31.97 2.12
3017 3330 4.387891 CCATATCATCCTTTTGGGGGTTCT 60.388 45.833 0.00 0.00 40.87 3.01
3043 3356 6.663734 AGACCTTCAGGATATTAAAACAGGG 58.336 40.000 0.00 0.00 38.94 4.45
3064 3381 7.549615 AACAAAGAACAGTAACAAGGTAGAC 57.450 36.000 0.00 0.00 0.00 2.59
3361 3678 4.202367 GGCTTACAGCATAACCCTACTGAT 60.202 45.833 0.00 0.00 44.75 2.90
3629 3946 6.256539 CGAATGTTATCAACAGTGCAGTAGAT 59.743 38.462 0.00 1.22 45.95 1.98
3631 3948 5.576774 TCGAATGTTATCAACAGTGCAGTAG 59.423 40.000 0.00 0.00 45.95 2.57
3682 3999 5.068460 CCAGTTAACAAGGACATTGGTTGAA 59.932 40.000 8.61 0.00 43.68 2.69
4080 4513 8.197592 TGGAACTCAGGTACTAAGAATTAACA 57.802 34.615 0.00 0.00 36.02 2.41
4188 4621 1.951209 TCAAGGCAGAGTATGACCCA 58.049 50.000 0.00 0.00 37.86 4.51
4571 5007 3.132160 GGCGCTATCCTTTCCTTTCTAC 58.868 50.000 7.64 0.00 0.00 2.59
4717 5171 3.384467 ACAAATGCTGCACAGGTTACTTT 59.616 39.130 3.57 0.00 0.00 2.66
4744 5198 1.275010 GGCGAATTGGGGAAATTGTGT 59.725 47.619 0.00 0.00 38.64 3.72
4815 5270 6.080009 AGAGGCATTATAAGAAATGGGCATT 58.920 36.000 0.00 0.00 37.34 3.56
4816 5271 5.648247 AGAGGCATTATAAGAAATGGGCAT 58.352 37.500 0.00 0.00 37.34 4.40
4820 5275 6.459066 TCTCGAGAGGCATTATAAGAAATGG 58.541 40.000 12.08 0.00 37.34 3.16
4822 5277 9.030452 AGTATCTCGAGAGGCATTATAAGAAAT 57.970 33.333 21.52 0.21 0.00 2.17
5098 5576 4.189231 CAAGACTTGGAACCGTATAAGGG 58.811 47.826 9.64 0.00 35.02 3.95
5139 5617 7.036220 CGGGTTATCTATAGCGATCTTCAATT 58.964 38.462 0.00 0.00 0.00 2.32
5271 5749 1.529948 CAGCCGGGATGCCATGAAT 60.530 57.895 2.18 0.00 0.00 2.57
5310 5788 6.310149 ACAGAAAATTGAACTCCCTCATTCT 58.690 36.000 0.00 0.00 0.00 2.40
5328 5806 6.003326 TCTCCAGTTGCAATATCAACAGAAA 58.997 36.000 0.59 0.00 46.44 2.52
5376 5855 4.160252 GCATGGCCAGAAAGGAAAAGATAA 59.840 41.667 13.05 0.00 41.22 1.75
5708 6433 4.221041 TCTTGTCGGTGTGGAATGTATACA 59.779 41.667 8.27 8.27 0.00 2.29
5787 6512 3.727726 TCCGCATCGATGACATAATGTT 58.272 40.909 29.20 0.00 0.00 2.71
5878 6604 4.576463 CGGCCTTTATTTATGTCAAGAGCT 59.424 41.667 0.00 0.00 0.00 4.09
5893 6619 0.450184 GAATTCGCAAGCGGCCTTTA 59.550 50.000 14.98 0.00 40.31 1.85
6144 6870 6.149973 TGTGCATAAGCCTTCTTATCATATGC 59.850 38.462 0.00 7.67 42.10 3.14
6156 6882 1.739466 CGTGTCATGTGCATAAGCCTT 59.261 47.619 0.00 0.00 41.13 4.35
6416 7142 5.511386 ACTCCTCCAGATCTTCAAATTGT 57.489 39.130 0.00 0.00 0.00 2.71
6478 7204 3.181540 CGTGTAACAGCAAGAATCTCACG 60.182 47.826 3.23 3.23 39.57 4.35
6499 7225 7.484471 TTGCTTGCACAAAATTTTAAAAACG 57.516 28.000 4.44 0.00 0.00 3.60
6560 7286 7.206687 CAGGTTTTACCAATCTGCAAGTAAAA 58.793 34.615 11.34 11.34 41.95 1.52
6684 7410 7.880160 TTGTGAAGGATCGATGGATAATTTT 57.120 32.000 0.54 0.00 31.51 1.82
6692 7418 5.050769 CGTATCTTTTGTGAAGGATCGATGG 60.051 44.000 0.54 0.00 34.00 3.51
6716 7457 9.060347 TGCCTAGATCAATTGAATATTGAGTTC 57.940 33.333 13.09 2.01 40.80 3.01
6811 7579 9.476202 GAATTTTGGTGATAATAATACTTGGGC 57.524 33.333 0.00 0.00 0.00 5.36
6849 7617 6.107343 TCCGTTCAATAATTATTGTCGTGGA 58.893 36.000 30.63 27.51 42.70 4.02
6866 7634 3.236896 AGAAAACTACTCCCTCCGTTCA 58.763 45.455 0.00 0.00 0.00 3.18
6884 7652 6.403049 TCGGTTCATGCTATGACTAAAAGAA 58.597 36.000 0.00 0.00 39.39 2.52
6906 7674 4.191544 TGCTGGATAAGGATTGAAGTTCG 58.808 43.478 0.00 0.00 0.00 3.95
6930 7698 0.960364 GGAATGGCAGCGACTTCCAA 60.960 55.000 11.08 0.00 37.65 3.53
6943 7711 4.289672 AGGGCTAACATATAGTGGGAATGG 59.710 45.833 0.00 0.00 0.00 3.16
6945 7713 5.162637 TGAGGGCTAACATATAGTGGGAAT 58.837 41.667 0.00 0.00 0.00 3.01
6973 7743 7.575365 TGTGCAGCTATATCATTGTTAAATCG 58.425 34.615 0.00 0.00 0.00 3.34
7012 7782 8.421002 ACAGGATGCTTAAATGTGTAAACTTTT 58.579 29.630 2.75 2.75 42.53 2.27
7027 7797 6.952773 AAAACAAGTGTTACAGGATGCTTA 57.047 33.333 0.00 0.00 37.02 3.09
7029 7799 6.942576 AGATAAAACAAGTGTTACAGGATGCT 59.057 34.615 0.00 0.00 37.02 3.79
7030 7800 7.023575 CAGATAAAACAAGTGTTACAGGATGC 58.976 38.462 0.00 0.00 37.02 3.91
7031 7801 8.099364 ACAGATAAAACAAGTGTTACAGGATG 57.901 34.615 0.00 0.00 38.90 3.51
7032 7802 9.787435 TTACAGATAAAACAAGTGTTACAGGAT 57.213 29.630 0.00 0.00 37.25 3.24
7033 7803 9.048446 GTTACAGATAAAACAAGTGTTACAGGA 57.952 33.333 0.00 0.00 37.25 3.86
7034 7804 9.052759 AGTTACAGATAAAACAAGTGTTACAGG 57.947 33.333 0.00 0.00 37.25 4.00
7156 7930 6.202954 ACTGAGTAAGGAAAGAACACGAAATG 59.797 38.462 0.00 0.00 0.00 2.32
7161 7935 4.617959 TCACTGAGTAAGGAAAGAACACG 58.382 43.478 0.00 0.00 0.00 4.49
7162 7936 8.779354 ATAATCACTGAGTAAGGAAAGAACAC 57.221 34.615 0.00 0.00 0.00 3.32
7171 7950 6.932356 ACATGCAATAATCACTGAGTAAGG 57.068 37.500 0.00 0.00 0.00 2.69
7205 7984 7.048629 AGACTACATGATTAGATGTCAGTGG 57.951 40.000 0.00 0.00 37.70 4.00
7451 8266 7.340232 TCTTGAAGGGGAAATTCAGTTCATATG 59.660 37.037 0.00 0.00 37.91 1.78
7511 8327 7.100409 CCTTCTTCTAAGAAACTGTAAGAGGG 58.900 42.308 6.61 0.00 43.84 4.30
7534 8350 0.814457 CAGAGCGCAGAAGACTACCT 59.186 55.000 11.47 0.00 0.00 3.08
7683 8499 1.900486 AGCAGGTACAACTCCAGGTAC 59.100 52.381 0.00 0.00 39.25 3.34
7712 8528 3.181443 GGGCCTACCTAATACACATGCTT 60.181 47.826 0.84 0.00 35.85 3.91
7784 8602 5.644977 TGAGACTATCACTTGGTACTGTG 57.355 43.478 0.00 0.52 35.59 3.66
7785 8603 5.186021 CCTTGAGACTATCACTTGGTACTGT 59.814 44.000 0.00 0.00 37.77 3.55
7938 8760 1.300971 TTGCGATGTTGGCTCTGCTC 61.301 55.000 0.00 0.00 0.00 4.26
7944 8766 1.533625 TTAGCTTTGCGATGTTGGCT 58.466 45.000 0.00 0.00 0.00 4.75
8015 8837 6.770746 ATATCCCATTCTATGAAGCAATGC 57.229 37.500 0.00 0.00 0.00 3.56
8034 8856 6.148480 GTGGAATGCTAGTGATCACCAATATC 59.852 42.308 22.21 13.09 0.00 1.63
8102 8924 1.909700 TCAAATTCTGACAGGTGGCC 58.090 50.000 1.81 0.00 0.00 5.36
8196 9018 3.382546 AGCAAGAAATCATGGAATTCGGG 59.617 43.478 0.00 0.00 0.00 5.14
8253 9075 6.402442 CGAAGATGACATTTGCAGTTACATCA 60.402 38.462 17.94 7.47 36.26 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.