Multiple sequence alignment - TraesCS5A01G252900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G252900 chr5A 100.000 2792 0 0 1 2792 468930644 468933435 0.000000e+00 5156
1 TraesCS5A01G252900 chr5D 89.610 2897 146 48 1 2779 366905183 366908042 0.000000e+00 3539
2 TraesCS5A01G252900 chr5B 88.238 2219 113 54 690 2789 434036466 434038655 0.000000e+00 2516
3 TraesCS5A01G252900 chr5B 81.016 669 54 31 27 661 434035841 434036470 5.450000e-127 464
4 TraesCS5A01G252900 chr2D 80.478 712 114 18 1088 1792 449510129 449509436 3.190000e-144 521
5 TraesCS5A01G252900 chr2A 80.223 718 113 21 1084 1792 593509211 593509908 1.920000e-141 512
6 TraesCS5A01G252900 chr2B 80.084 713 121 14 1085 1792 529110277 529110973 6.900000e-141 510


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G252900 chr5A 468930644 468933435 2791 False 5156 5156 100.000 1 2792 1 chr5A.!!$F1 2791
1 TraesCS5A01G252900 chr5D 366905183 366908042 2859 False 3539 3539 89.610 1 2779 1 chr5D.!!$F1 2778
2 TraesCS5A01G252900 chr5B 434035841 434038655 2814 False 1490 2516 84.627 27 2789 2 chr5B.!!$F1 2762
3 TraesCS5A01G252900 chr2D 449509436 449510129 693 True 521 521 80.478 1088 1792 1 chr2D.!!$R1 704
4 TraesCS5A01G252900 chr2A 593509211 593509908 697 False 512 512 80.223 1084 1792 1 chr2A.!!$F1 708
5 TraesCS5A01G252900 chr2B 529110277 529110973 696 False 510 510 80.084 1085 1792 1 chr2B.!!$F1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 490 0.038159 AGTGCTGCTACCGAGAACAC 60.038 55.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 2559 0.109781 GTTGTTGATCGCCACGCATT 60.11 50.0 0.0 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.376340 AACAAAGCACTCCAAGAAACAG 57.624 40.909 0.00 0.00 0.00 3.16
23 24 3.620488 ACAAAGCACTCCAAGAAACAGA 58.380 40.909 0.00 0.00 0.00 3.41
25 26 3.281727 AAGCACTCCAAGAAACAGACA 57.718 42.857 0.00 0.00 0.00 3.41
76 77 0.320160 AAGTAACCGACGGAGCAACC 60.320 55.000 23.38 1.84 0.00 3.77
158 197 3.341823 CAGATGGCCATGGATTAGCTAC 58.658 50.000 26.56 4.04 0.00 3.58
190 229 6.035650 CGTATAACCGTTTCATGATCAGTGTT 59.964 38.462 0.09 0.08 0.00 3.32
194 233 3.181530 CCGTTTCATGATCAGTGTTCGTC 60.182 47.826 0.09 0.00 0.00 4.20
196 235 4.433413 CGTTTCATGATCAGTGTTCGTCTG 60.433 45.833 0.09 0.00 0.00 3.51
250 290 1.202245 CGGTGCGTTTGGATAAATGGG 60.202 52.381 0.00 0.00 34.16 4.00
263 303 7.169158 TGGATAAATGGGTTTCACTTGAATC 57.831 36.000 0.00 0.00 33.54 2.52
268 308 2.158475 TGGGTTTCACTTGAATCCAGCT 60.158 45.455 17.15 0.00 42.74 4.24
269 309 2.489722 GGGTTTCACTTGAATCCAGCTC 59.510 50.000 17.15 1.17 42.74 4.09
276 316 2.956964 GAATCCAGCTCGTCGCCG 60.957 66.667 0.00 0.00 40.39 6.46
358 403 1.064654 GTGCGCCATGATTTCTCTTCC 59.935 52.381 4.18 0.00 0.00 3.46
361 406 1.312815 GCCATGATTTCTCTTCCCCG 58.687 55.000 0.00 0.00 0.00 5.73
418 463 2.771089 AGTTGCCGATCGAATGCATAT 58.229 42.857 18.66 6.59 34.51 1.78
419 464 3.141398 AGTTGCCGATCGAATGCATATT 58.859 40.909 18.66 3.87 34.51 1.28
422 467 3.337358 TGCCGATCGAATGCATATTCAT 58.663 40.909 18.66 0.00 42.27 2.57
424 469 4.567959 TGCCGATCGAATGCATATTCATAG 59.432 41.667 18.66 0.00 42.27 2.23
426 471 4.567959 CCGATCGAATGCATATTCATAGCA 59.432 41.667 18.66 0.00 42.27 3.49
427 472 5.276726 CCGATCGAATGCATATTCATAGCAG 60.277 44.000 18.66 0.00 42.27 4.24
428 473 5.290400 CGATCGAATGCATATTCATAGCAGT 59.710 40.000 10.26 0.00 42.27 4.40
429 474 5.851047 TCGAATGCATATTCATAGCAGTG 57.149 39.130 0.00 0.00 42.27 3.66
431 476 4.153655 CGAATGCATATTCATAGCAGTGCT 59.846 41.667 23.44 23.44 42.27 4.40
432 477 5.372547 AATGCATATTCATAGCAGTGCTG 57.627 39.130 27.97 13.01 42.14 4.41
443 488 2.743195 CAGTGCTGCTACCGAGAAC 58.257 57.895 0.00 0.00 0.00 3.01
445 490 0.038159 AGTGCTGCTACCGAGAACAC 60.038 55.000 0.00 0.00 0.00 3.32
499 549 4.996062 TCGTAGTTTTTCCATTTCGGTC 57.004 40.909 0.00 0.00 35.57 4.79
545 595 0.246086 GGGCAGATGAGATCTAGCCG 59.754 60.000 15.08 0.00 45.91 5.52
613 667 0.393537 AGAGTGGCTAGGCATGCAAC 60.394 55.000 23.15 9.01 34.74 4.17
639 693 1.594862 GAGTGCACGATAACTCCATGC 59.405 52.381 12.01 0.00 37.45 4.06
640 694 1.066215 AGTGCACGATAACTCCATGCA 60.066 47.619 12.01 0.00 43.70 3.96
641 695 1.368641 TGCACGATAACTCCATGCAC 58.631 50.000 0.00 0.00 41.18 4.57
680 734 8.475331 TTCTCTATACGAAAAAGAACACCATC 57.525 34.615 0.00 0.00 0.00 3.51
691 745 3.772636 CACCATCTGTGCTCGTCG 58.227 61.111 0.00 0.00 38.34 5.12
696 750 3.286915 ATCTGTGCTCGTCGCTGCA 62.287 57.895 8.31 8.31 40.11 4.41
704 758 1.690283 CTCGTCGCTGCAACATCCAG 61.690 60.000 0.00 0.00 0.00 3.86
711 765 4.465512 GCAACATCCAGCGCCACG 62.466 66.667 2.29 0.00 0.00 4.94
753 807 1.981495 AGGGAGAAGAGAACAAGTGGG 59.019 52.381 0.00 0.00 0.00 4.61
805 859 2.159234 CAGGAAGCGAGAGAAAGCAAAG 59.841 50.000 0.00 0.00 35.48 2.77
806 860 1.135831 GGAAGCGAGAGAAAGCAAAGC 60.136 52.381 0.00 0.00 35.48 3.51
807 861 1.532868 GAAGCGAGAGAAAGCAAAGCA 59.467 47.619 0.00 0.00 35.48 3.91
894 948 2.374781 TTAAACCCCCAGTGCCCACC 62.375 60.000 0.00 0.00 0.00 4.61
1522 1602 2.048503 CCGTCGACAGGGTGTTCC 60.049 66.667 17.16 0.00 0.00 3.62
1719 1799 3.655810 CTCCAAGAAGAGCGCGGCT 62.656 63.158 8.83 5.31 43.88 5.52
1843 1924 1.490693 ATTGGCGTGATCGATCGTGC 61.491 55.000 25.26 25.26 39.71 5.34
1846 1927 2.916423 CGTGATCGATCGTGCTGC 59.084 61.111 20.03 0.00 39.71 5.25
1873 1971 3.131396 CGTGTTCCTGTAGTGCTTCTTT 58.869 45.455 0.00 0.00 0.00 2.52
1982 2109 2.803451 CTCGTGCTACATGAGAGGTTC 58.197 52.381 10.63 0.00 46.87 3.62
2003 2130 0.463295 ATGGCATCTTGAGCTCACCG 60.463 55.000 18.03 10.95 0.00 4.94
2060 2187 2.218603 GAGTGAAACCTTGGAGCGAAA 58.781 47.619 0.00 0.00 37.80 3.46
2073 2200 2.976840 GCGAAATTGCTCCGTGCCA 61.977 57.895 0.00 0.00 42.00 4.92
2117 2257 5.561499 CGAATTCTCGTCAACATGTTTTGAG 59.439 40.000 8.77 15.28 40.33 3.02
2120 2260 7.905604 ATTCTCGTCAACATGTTTTGAGATA 57.094 32.000 24.02 17.97 36.15 1.98
2121 2261 6.706055 TCTCGTCAACATGTTTTGAGATAC 57.294 37.500 21.50 7.93 36.15 2.24
2135 2275 7.339721 TGTTTTGAGATACTCCTAGTCCTACAG 59.660 40.741 0.00 0.00 0.00 2.74
2171 2323 4.795278 GCTCAAATTTTCTATGGCGTCTTG 59.205 41.667 0.00 0.00 0.00 3.02
2195 2347 6.037062 TGGTCAGATCGTATAAACAAATGCAG 59.963 38.462 0.00 0.00 0.00 4.41
2272 2424 1.078848 AGCTGTCGGTGGATGCTTC 60.079 57.895 0.00 0.00 33.17 3.86
2340 2495 4.004196 AGTAAAAGTAGTGCAGGTGACC 57.996 45.455 0.00 0.00 0.00 4.02
2349 2507 2.234908 AGTGCAGGTGACCAGTAGAATC 59.765 50.000 3.63 0.00 0.00 2.52
2350 2508 1.555075 TGCAGGTGACCAGTAGAATCC 59.445 52.381 3.63 0.00 0.00 3.01
2351 2509 1.134371 GCAGGTGACCAGTAGAATCCC 60.134 57.143 3.63 0.00 0.00 3.85
2352 2510 2.187958 CAGGTGACCAGTAGAATCCCA 58.812 52.381 3.63 0.00 0.00 4.37
2353 2511 2.774234 CAGGTGACCAGTAGAATCCCAT 59.226 50.000 3.63 0.00 0.00 4.00
2359 2517 6.352737 GGTGACCAGTAGAATCCCATAAAGAA 60.353 42.308 0.00 0.00 0.00 2.52
2360 2518 6.763610 GTGACCAGTAGAATCCCATAAAGAAG 59.236 42.308 0.00 0.00 0.00 2.85
2361 2519 6.672218 TGACCAGTAGAATCCCATAAAGAAGA 59.328 38.462 0.00 0.00 0.00 2.87
2372 2530 4.965532 CCCATAAAGAAGAGAGGAAGGAGA 59.034 45.833 0.00 0.00 0.00 3.71
2400 2559 4.113815 CTTGGCCCGGGCTGATGA 62.114 66.667 42.70 22.92 41.60 2.92
2405 2566 3.282157 CCCGGGCTGATGAATGCG 61.282 66.667 8.08 0.00 0.00 4.73
2418 2579 0.167908 GAATGCGTGGCGATCAACAA 59.832 50.000 0.00 0.00 0.00 2.83
2437 2598 7.262772 TCAACAACGAAAGAAGAAGAGAAGTA 58.737 34.615 0.00 0.00 0.00 2.24
2441 2602 7.010275 ACAACGAAAGAAGAAGAGAAGTAACAC 59.990 37.037 0.00 0.00 0.00 3.32
2547 2726 3.447025 CTGCCGCTAGCCCACTACC 62.447 68.421 9.66 0.00 42.71 3.18
2549 2728 3.547513 CCGCTAGCCCACTACCCC 61.548 72.222 9.66 0.00 0.00 4.95
2550 2729 2.762459 CGCTAGCCCACTACCCCA 60.762 66.667 9.66 0.00 0.00 4.96
2551 2730 2.140792 CGCTAGCCCACTACCCCAT 61.141 63.158 9.66 0.00 0.00 4.00
2552 2731 0.830444 CGCTAGCCCACTACCCCATA 60.830 60.000 9.66 0.00 0.00 2.74
2597 2801 3.591254 GAGAGTGGACGGTGCACCC 62.591 68.421 29.95 16.96 39.72 4.61
2606 2810 2.262915 GGTGCACCCAGACGAGAG 59.737 66.667 26.31 0.00 0.00 3.20
2618 2822 5.045869 ACCCAGACGAGAGGATTTAATGAAA 60.046 40.000 0.00 0.00 0.00 2.69
2664 2868 0.389948 AGCAATCTCGTGAACGGTCC 60.390 55.000 0.00 0.00 40.29 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.378112 TGTCTGTTTCTTGGAGTGCTTTG 59.622 43.478 0.00 0.00 0.00 2.77
7 8 2.565841 ACTGTCTGTTTCTTGGAGTGC 58.434 47.619 0.00 0.00 0.00 4.40
20 21 1.128878 CTCGTCGAGTGGTACTGTCTG 59.871 57.143 14.27 0.00 0.00 3.51
22 23 0.447011 CCTCGTCGAGTGGTACTGTC 59.553 60.000 20.37 0.00 0.00 3.51
23 24 1.584380 GCCTCGTCGAGTGGTACTGT 61.584 60.000 20.37 0.00 35.96 3.55
25 26 2.045131 GGCCTCGTCGAGTGGTACT 61.045 63.158 20.37 0.00 35.96 2.73
106 107 2.275318 GATTTTCTCTGCGGAGACAGG 58.725 52.381 25.06 0.00 46.89 4.00
107 108 2.670414 GTGATTTTCTCTGCGGAGACAG 59.330 50.000 25.06 0.00 46.89 3.51
108 109 2.300152 AGTGATTTTCTCTGCGGAGACA 59.700 45.455 25.06 16.27 46.89 3.41
109 110 2.966050 AGTGATTTTCTCTGCGGAGAC 58.034 47.619 25.06 13.76 46.89 3.36
110 111 3.429547 GCTAGTGATTTTCTCTGCGGAGA 60.430 47.826 21.62 21.62 45.75 3.71
111 112 2.863137 GCTAGTGATTTTCTCTGCGGAG 59.137 50.000 16.98 16.98 40.73 4.63
112 113 2.233676 TGCTAGTGATTTTCTCTGCGGA 59.766 45.455 0.00 0.00 0.00 5.54
128 152 2.590007 GGCCATCTGCGGTGCTAG 60.590 66.667 0.00 0.00 42.61 3.42
158 197 3.587923 TGAAACGGTTATACGGACTTGG 58.412 45.455 0.00 0.00 38.39 3.61
250 290 2.808543 ACGAGCTGGATTCAAGTGAAAC 59.191 45.455 1.44 0.00 37.61 2.78
334 379 1.226773 GAAATCATGGCGCACTGGC 60.227 57.895 10.83 0.00 45.12 4.85
335 380 0.379669 GAGAAATCATGGCGCACTGG 59.620 55.000 10.83 0.00 0.00 4.00
336 381 1.376543 AGAGAAATCATGGCGCACTG 58.623 50.000 10.83 5.83 0.00 3.66
337 382 2.012673 GAAGAGAAATCATGGCGCACT 58.987 47.619 10.83 0.00 0.00 4.40
358 403 4.776322 TGGAGCAATCACGGCGGG 62.776 66.667 13.24 7.61 36.08 6.13
426 471 0.038159 GTGTTCTCGGTAGCAGCACT 60.038 55.000 0.00 0.00 0.00 4.40
427 472 0.319555 TGTGTTCTCGGTAGCAGCAC 60.320 55.000 0.00 0.00 0.00 4.40
428 473 0.319555 GTGTGTTCTCGGTAGCAGCA 60.320 55.000 0.00 0.00 0.00 4.41
429 474 0.319555 TGTGTGTTCTCGGTAGCAGC 60.320 55.000 0.00 0.00 0.00 5.25
431 476 1.037493 ACTGTGTGTTCTCGGTAGCA 58.963 50.000 0.00 0.00 0.00 3.49
432 477 1.419374 CACTGTGTGTTCTCGGTAGC 58.581 55.000 0.00 0.00 0.00 3.58
434 479 1.037493 AGCACTGTGTGTTCTCGGTA 58.963 50.000 9.86 0.00 35.75 4.02
435 480 1.037493 TAGCACTGTGTGTTCTCGGT 58.963 50.000 9.86 0.00 35.75 4.69
436 481 2.370281 ATAGCACTGTGTGTTCTCGG 57.630 50.000 9.86 0.00 35.75 4.63
438 483 6.622549 AGTAGTAATAGCACTGTGTGTTCTC 58.377 40.000 9.86 0.00 35.75 2.87
440 485 5.512082 CGAGTAGTAATAGCACTGTGTGTTC 59.488 44.000 9.86 0.00 35.75 3.18
441 486 5.048224 ACGAGTAGTAATAGCACTGTGTGTT 60.048 40.000 9.86 4.92 35.75 3.32
442 487 4.458295 ACGAGTAGTAATAGCACTGTGTGT 59.542 41.667 9.86 0.00 35.75 3.72
443 488 4.982999 ACGAGTAGTAATAGCACTGTGTG 58.017 43.478 9.86 0.00 36.51 3.82
445 490 4.095932 TGGACGAGTAGTAATAGCACTGTG 59.904 45.833 2.76 2.76 0.00 3.66
545 595 0.321653 ATCCTTGTGGCTGTCGGTTC 60.322 55.000 0.00 0.00 0.00 3.62
583 637 0.600255 AGCCACTCTGTTCGTTTCCG 60.600 55.000 0.00 0.00 0.00 4.30
595 649 1.709147 CGTTGCATGCCTAGCCACTC 61.709 60.000 16.68 0.00 0.00 3.51
696 750 3.958147 CTCCGTGGCGCTGGATGTT 62.958 63.158 7.64 0.00 32.83 2.71
704 758 2.435938 TTTGGATCTCCGTGGCGC 60.436 61.111 0.00 0.00 39.43 6.53
711 765 2.565841 CCATCTTCGGTTTGGATCTCC 58.434 52.381 0.00 0.00 31.94 3.71
958 1012 2.807045 GACTGAGAGTGGCGTGCG 60.807 66.667 0.00 0.00 0.00 5.34
1254 1334 0.736325 CGGCGGTGAGGTTCTTGTAG 60.736 60.000 0.00 0.00 0.00 2.74
1344 1424 2.436795 CGTGTTCATGACGCCGTTA 58.563 52.632 0.00 0.00 35.29 3.18
1846 1927 1.800315 CTACAGGAACACGCCGTCG 60.800 63.158 0.00 0.00 42.43 5.12
1856 1937 2.413837 GCGAAAGAAGCACTACAGGAA 58.586 47.619 0.00 0.00 34.19 3.36
1859 1940 0.716108 CCGCGAAAGAAGCACTACAG 59.284 55.000 8.23 0.00 34.19 2.74
1873 1971 1.271379 ACACAACTATGTCTTCCGCGA 59.729 47.619 8.23 0.00 37.82 5.87
1982 2109 1.022735 GTGAGCTCAAGATGCCATGG 58.977 55.000 20.19 7.63 0.00 3.66
2003 2130 4.215399 TCGACCAAAAGAACATCAATGTCC 59.785 41.667 0.00 0.00 40.80 4.02
2068 2195 2.483288 CGCCCGTTAACATGGCAC 59.517 61.111 26.76 8.21 45.63 5.01
2073 2200 1.989430 CAAAATGCGCCCGTTAACAT 58.011 45.000 4.18 0.00 0.00 2.71
2105 2238 7.181125 AGGACTAGGAGTATCTCAAAACATGTT 59.819 37.037 4.92 4.92 33.73 2.71
2109 2242 7.179966 TGTAGGACTAGGAGTATCTCAAAACA 58.820 38.462 0.00 0.00 33.73 2.83
2110 2243 7.556996 TCTGTAGGACTAGGAGTATCTCAAAAC 59.443 40.741 0.00 0.00 33.73 2.43
2111 2244 7.640313 TCTGTAGGACTAGGAGTATCTCAAAA 58.360 38.462 0.00 0.00 33.73 2.44
2113 2246 6.387513 ACTCTGTAGGACTAGGAGTATCTCAA 59.612 42.308 10.97 0.00 35.79 3.02
2117 2257 6.177310 TGACTCTGTAGGACTAGGAGTATC 57.823 45.833 12.03 5.31 37.38 2.24
2120 2260 4.931027 TTGACTCTGTAGGACTAGGAGT 57.069 45.455 11.94 11.94 39.54 3.85
2121 2261 6.605594 AGAAATTGACTCTGTAGGACTAGGAG 59.394 42.308 0.00 7.35 0.00 3.69
2135 2275 7.150640 AGAAAATTTGAGCCAGAAATTGACTC 58.849 34.615 0.00 0.00 36.88 3.36
2171 2323 6.358118 TGCATTTGTTTATACGATCTGACC 57.642 37.500 0.00 0.00 0.00 4.02
2227 2379 5.541484 AGTCCCAAGAAATGAATGAAAGCTT 59.459 36.000 0.00 0.00 0.00 3.74
2272 2424 2.029666 CTTGAGCCGGGGATAGCG 59.970 66.667 2.18 0.00 0.00 4.26
2340 2495 7.288852 TCCTCTCTTCTTTATGGGATTCTACTG 59.711 40.741 0.00 0.00 0.00 2.74
2349 2507 4.965532 TCTCCTTCCTCTCTTCTTTATGGG 59.034 45.833 0.00 0.00 0.00 4.00
2350 2508 5.070313 CCTCTCCTTCCTCTCTTCTTTATGG 59.930 48.000 0.00 0.00 0.00 2.74
2351 2509 5.660864 ACCTCTCCTTCCTCTCTTCTTTATG 59.339 44.000 0.00 0.00 0.00 1.90
2352 2510 5.660864 CACCTCTCCTTCCTCTCTTCTTTAT 59.339 44.000 0.00 0.00 0.00 1.40
2353 2511 5.020132 CACCTCTCCTTCCTCTCTTCTTTA 58.980 45.833 0.00 0.00 0.00 1.85
2359 2517 3.551635 TTTCACCTCTCCTTCCTCTCT 57.448 47.619 0.00 0.00 0.00 3.10
2360 2518 4.574892 CTTTTTCACCTCTCCTTCCTCTC 58.425 47.826 0.00 0.00 0.00 3.20
2361 2519 3.244735 GCTTTTTCACCTCTCCTTCCTCT 60.245 47.826 0.00 0.00 0.00 3.69
2372 2530 1.463553 CGGGCCAAGCTTTTTCACCT 61.464 55.000 4.39 0.00 0.00 4.00
2400 2559 0.109781 GTTGTTGATCGCCACGCATT 60.110 50.000 0.00 0.00 0.00 3.56
2405 2566 1.529438 TCTTTCGTTGTTGATCGCCAC 59.471 47.619 0.00 0.00 0.00 5.01
2418 2579 5.984323 GGTGTTACTTCTCTTCTTCTTTCGT 59.016 40.000 0.00 0.00 0.00 3.85
2437 2598 1.616159 CCGAAATGGAAGGTGGTGTT 58.384 50.000 0.00 0.00 42.00 3.32
2441 2602 0.611896 AAGCCCGAAATGGAAGGTGG 60.612 55.000 0.00 0.00 42.00 4.61
2547 2726 0.557729 ATGTTTGGGCTCCCTATGGG 59.442 55.000 6.50 0.00 46.11 4.00
2549 2728 3.303351 AAGATGTTTGGGCTCCCTATG 57.697 47.619 6.50 0.00 36.94 2.23
2550 2729 4.026052 CAAAAGATGTTTGGGCTCCCTAT 58.974 43.478 6.50 0.00 36.94 2.57
2551 2730 3.430453 CAAAAGATGTTTGGGCTCCCTA 58.570 45.455 6.50 0.00 36.94 3.53
2552 2731 2.250924 CAAAAGATGTTTGGGCTCCCT 58.749 47.619 6.50 0.00 36.94 4.20
2597 2801 6.092670 TGCTTTTCATTAAATCCTCTCGTCTG 59.907 38.462 0.00 0.00 0.00 3.51
2606 2810 5.713025 TGCTGACTGCTTTTCATTAAATCC 58.287 37.500 5.87 0.00 43.37 3.01
2618 2822 2.486982 GACACATGATTGCTGACTGCTT 59.513 45.455 0.00 0.00 43.37 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.