Multiple sequence alignment - TraesCS5A01G252500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G252500 chr5A 100.000 3218 0 0 1 3218 468858776 468861993 0.000000e+00 5943
1 TraesCS5A01G252500 chr5A 80.537 149 19 4 2935 3081 31368 31228 4.390000e-19 106
2 TraesCS5A01G252500 chr5B 94.388 1871 83 7 919 2772 433869318 433871183 0.000000e+00 2854
3 TraesCS5A01G252500 chr5B 90.401 823 52 5 115 918 433868078 433868892 0.000000e+00 1057
4 TraesCS5A01G252500 chr5B 93.994 333 12 7 2772 3103 433883201 433883526 6.200000e-137 497
5 TraesCS5A01G252500 chr5B 98.214 112 1 1 3099 3209 433886506 433886617 9.110000e-46 195
6 TraesCS5A01G252500 chr5B 94.958 119 5 1 1 119 433859435 433859552 5.480000e-43 185
7 TraesCS5A01G252500 chr5D 96.027 1485 45 5 844 2323 366674002 366675477 0.000000e+00 2403
8 TraesCS5A01G252500 chr5D 91.082 527 23 13 2636 3148 366675883 366676399 0.000000e+00 691
9 TraesCS5A01G252500 chr5D 97.333 225 5 1 2418 2642 366675620 366675843 6.510000e-102 381
10 TraesCS5A01G252500 chr4A 81.313 198 27 6 2932 3126 132062703 132062893 5.560000e-33 152
11 TraesCS5A01G252500 chrUn 84.354 147 23 0 2932 3078 84535227 84535373 9.300000e-31 145
12 TraesCS5A01G252500 chr7B 84.354 147 23 0 2932 3078 10943724 10943870 9.300000e-31 145
13 TraesCS5A01G252500 chr7A 83.784 148 24 0 2931 3078 70769661 70769514 1.200000e-29 141
14 TraesCS5A01G252500 chr7A 81.325 166 19 7 2936 3099 137830760 137830605 1.210000e-24 124
15 TraesCS5A01G252500 chr7D 83.108 148 16 5 2934 3078 605162810 605162951 3.370000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G252500 chr5A 468858776 468861993 3217 False 5943.000000 5943 100.0000 1 3218 1 chr5A.!!$F1 3217
1 TraesCS5A01G252500 chr5B 433868078 433871183 3105 False 1955.500000 2854 92.3945 115 2772 2 chr5B.!!$F2 2657
2 TraesCS5A01G252500 chr5B 433883201 433886617 3416 False 346.000000 497 96.1040 2772 3209 2 chr5B.!!$F3 437
3 TraesCS5A01G252500 chr5D 366674002 366676399 2397 False 1158.333333 2403 94.8140 844 3148 3 chr5D.!!$F1 2304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 860 0.033796 ATGGATGAACACAGGCCCTG 60.034 55.0 9.83 9.83 37.52 4.45 F
940 1386 0.036952 CCAGTGCATCTGACTTCGGT 60.037 55.0 15.22 0.00 46.27 4.69 F
2006 2458 0.438830 GTGTTGCCGTCGACAATCTC 59.561 55.0 17.16 3.39 38.28 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 2575 0.108992 GTTGCGTACCCTCGACATCA 60.109 55.000 0.0 0.0 0.00 3.07 R
2184 2636 1.075659 GGCTCCCAGGCAAGAACTT 59.924 57.895 0.0 0.0 40.97 2.66 R
2841 3482 3.741245 TCTAGTAGTGAGGACTGGCTT 57.259 47.619 0.0 0.0 33.21 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.775236 GTAGCTTTCTTCCATCATCACCT 58.225 43.478 0.00 0.00 0.00 4.00
23 24 3.883669 AGCTTTCTTCCATCATCACCTC 58.116 45.455 0.00 0.00 0.00 3.85
24 25 2.948315 GCTTTCTTCCATCATCACCTCC 59.052 50.000 0.00 0.00 0.00 4.30
25 26 3.549794 CTTTCTTCCATCATCACCTCCC 58.450 50.000 0.00 0.00 0.00 4.30
26 27 2.268796 TCTTCCATCATCACCTCCCA 57.731 50.000 0.00 0.00 0.00 4.37
27 28 1.839994 TCTTCCATCATCACCTCCCAC 59.160 52.381 0.00 0.00 0.00 4.61
28 29 0.918983 TTCCATCATCACCTCCCACC 59.081 55.000 0.00 0.00 0.00 4.61
29 30 1.146930 CCATCATCACCTCCCACCG 59.853 63.158 0.00 0.00 0.00 4.94
30 31 1.337384 CCATCATCACCTCCCACCGA 61.337 60.000 0.00 0.00 0.00 4.69
31 32 0.541392 CATCATCACCTCCCACCGAA 59.459 55.000 0.00 0.00 0.00 4.30
32 33 1.065491 CATCATCACCTCCCACCGAAA 60.065 52.381 0.00 0.00 0.00 3.46
33 34 1.060729 TCATCACCTCCCACCGAAAA 58.939 50.000 0.00 0.00 0.00 2.29
34 35 1.422024 TCATCACCTCCCACCGAAAAA 59.578 47.619 0.00 0.00 0.00 1.94
69 70 1.839424 GGGTCTTTTCTCCCATGTGG 58.161 55.000 0.00 0.00 42.95 4.17
70 71 1.075536 GGGTCTTTTCTCCCATGTGGT 59.924 52.381 0.00 0.00 42.95 4.16
71 72 2.162681 GGTCTTTTCTCCCATGTGGTG 58.837 52.381 0.00 0.00 34.77 4.17
72 73 2.224769 GGTCTTTTCTCCCATGTGGTGA 60.225 50.000 0.00 0.00 34.85 4.02
73 74 3.077359 GTCTTTTCTCCCATGTGGTGAG 58.923 50.000 9.81 9.81 37.88 3.51
74 75 2.978978 TCTTTTCTCCCATGTGGTGAGA 59.021 45.455 13.06 13.06 37.88 3.27
75 76 2.859165 TTTCTCCCATGTGGTGAGAC 57.141 50.000 15.41 0.00 39.53 3.36
76 77 0.984230 TTCTCCCATGTGGTGAGACC 59.016 55.000 15.41 0.00 39.53 3.85
77 78 0.909610 TCTCCCATGTGGTGAGACCC 60.910 60.000 13.06 0.00 37.50 4.46
78 79 1.151921 TCCCATGTGGTGAGACCCA 60.152 57.895 0.00 0.00 37.50 4.51
87 88 2.903404 GTGAGACCCACCCTAGAGG 58.097 63.158 0.00 0.00 39.86 3.69
88 89 0.335361 GTGAGACCCACCCTAGAGGA 59.665 60.000 0.00 0.00 39.86 3.71
89 90 0.631753 TGAGACCCACCCTAGAGGAG 59.368 60.000 0.00 0.00 39.89 3.69
90 91 0.105913 GAGACCCACCCTAGAGGAGG 60.106 65.000 0.00 5.69 45.68 4.30
91 92 1.762858 GACCCACCCTAGAGGAGGC 60.763 68.421 0.00 0.00 44.78 4.70
92 93 2.446802 CCCACCCTAGAGGAGGCC 60.447 72.222 0.00 0.00 44.78 5.19
93 94 2.368594 CCACCCTAGAGGAGGCCA 59.631 66.667 5.01 0.00 45.17 5.36
94 95 2.066999 CCACCCTAGAGGAGGCCAC 61.067 68.421 5.01 0.00 45.17 5.01
95 96 1.306141 CACCCTAGAGGAGGCCACA 60.306 63.158 5.01 0.00 45.17 4.17
96 97 1.306226 ACCCTAGAGGAGGCCACAC 60.306 63.158 5.01 0.00 45.17 3.82
97 98 1.002274 CCCTAGAGGAGGCCACACT 59.998 63.158 5.01 3.87 45.17 3.55
98 99 0.618968 CCCTAGAGGAGGCCACACTT 60.619 60.000 5.01 0.00 45.17 3.16
99 100 0.827368 CCTAGAGGAGGCCACACTTC 59.173 60.000 5.01 1.79 38.96 3.01
100 101 1.621072 CCTAGAGGAGGCCACACTTCT 60.621 57.143 5.01 9.84 38.96 2.85
101 102 2.183679 CTAGAGGAGGCCACACTTCTT 58.816 52.381 5.01 0.00 0.00 2.52
102 103 1.439543 AGAGGAGGCCACACTTCTTT 58.560 50.000 5.01 0.00 0.00 2.52
103 104 1.777272 AGAGGAGGCCACACTTCTTTT 59.223 47.619 5.01 0.00 0.00 2.27
104 105 2.175715 AGAGGAGGCCACACTTCTTTTT 59.824 45.455 5.01 0.00 0.00 1.94
105 106 3.394606 AGAGGAGGCCACACTTCTTTTTA 59.605 43.478 5.01 0.00 0.00 1.52
106 107 3.487372 AGGAGGCCACACTTCTTTTTAC 58.513 45.455 5.01 0.00 0.00 2.01
107 108 2.557056 GGAGGCCACACTTCTTTTTACC 59.443 50.000 5.01 0.00 0.00 2.85
108 109 3.219281 GAGGCCACACTTCTTTTTACCA 58.781 45.455 5.01 0.00 0.00 3.25
109 110 3.634910 GAGGCCACACTTCTTTTTACCAA 59.365 43.478 5.01 0.00 0.00 3.67
110 111 4.223144 AGGCCACACTTCTTTTTACCAAT 58.777 39.130 5.01 0.00 0.00 3.16
111 112 4.280929 AGGCCACACTTCTTTTTACCAATC 59.719 41.667 5.01 0.00 0.00 2.67
112 113 4.556233 GCCACACTTCTTTTTACCAATCC 58.444 43.478 0.00 0.00 0.00 3.01
113 114 4.560716 GCCACACTTCTTTTTACCAATCCC 60.561 45.833 0.00 0.00 0.00 3.85
131 132 1.131883 CCCAAAGCATCTCTTCTTGCG 59.868 52.381 0.00 0.00 43.61 4.85
197 198 4.241681 GTCTATCCTTCATCGGAATCAGC 58.758 47.826 0.00 0.00 36.49 4.26
199 200 1.203237 TCCTTCATCGGAATCAGCCA 58.797 50.000 0.00 0.00 31.34 4.75
219 220 5.309806 AGCCAACTAAGACTTCCTTTCCTTA 59.690 40.000 0.00 0.00 36.34 2.69
226 227 9.945633 ACTAAGACTTCCTTTCCTTATCTAGAT 57.054 33.333 10.73 10.73 36.34 1.98
239 240 0.454600 TCTAGATGGGCACGACGAAC 59.545 55.000 0.00 0.00 0.00 3.95
266 267 6.916387 GCTTTGGTTTCTTTGTAGGAAGTAAC 59.084 38.462 0.00 0.00 36.66 2.50
306 307 6.172136 AGTAGCTCAGAACTTATGATGCAT 57.828 37.500 0.00 0.00 0.00 3.96
324 325 2.191802 CATGTTCTCTACAGCTGAGCG 58.808 52.381 23.35 8.67 40.83 5.03
325 326 1.534729 TGTTCTCTACAGCTGAGCGA 58.465 50.000 23.35 10.93 31.68 4.93
377 378 2.092267 AGCTGCATACCATCCAATGTGA 60.092 45.455 1.02 0.00 0.00 3.58
388 389 4.499188 CCATCCAATGTGATGACAATCAGC 60.499 45.833 11.53 0.00 43.52 4.26
389 390 3.959293 TCCAATGTGATGACAATCAGCT 58.041 40.909 0.00 0.00 43.52 4.24
425 426 1.073199 CCCGCCTTCCTCACAAGTT 59.927 57.895 0.00 0.00 0.00 2.66
426 427 0.323629 CCCGCCTTCCTCACAAGTTA 59.676 55.000 0.00 0.00 0.00 2.24
427 428 1.439679 CCGCCTTCCTCACAAGTTAC 58.560 55.000 0.00 0.00 0.00 2.50
428 429 1.270625 CCGCCTTCCTCACAAGTTACA 60.271 52.381 0.00 0.00 0.00 2.41
475 476 5.952033 ACTAGACAAGTACAAGTCGAATCC 58.048 41.667 0.00 0.00 39.67 3.01
506 507 9.489084 AATACTTTTATTTTGTTGCTTCCCTTC 57.511 29.630 0.00 0.00 0.00 3.46
527 528 8.549731 CCCTTCTTTAATTTCCCTTACTACTCT 58.450 37.037 0.00 0.00 0.00 3.24
532 533 1.772836 TTCCCTTACTACTCTCCGGC 58.227 55.000 0.00 0.00 0.00 6.13
536 537 0.381089 CTTACTACTCTCCGGCGTGG 59.619 60.000 6.01 0.00 40.09 4.94
555 556 3.760035 ACCCAGCTACAGTCGGCG 61.760 66.667 0.00 0.00 0.00 6.46
566 567 1.152943 AGTCGGCGATCCTGCTAGA 60.153 57.895 14.79 0.00 34.52 2.43
568 569 2.050895 CGGCGATCCTGCTAGACG 60.051 66.667 0.00 0.00 34.52 4.18
586 587 0.238289 CGTGGTGTGGAGCATTCAAC 59.762 55.000 0.00 0.00 30.75 3.18
594 595 3.754850 TGTGGAGCATTCAACAGAGATTG 59.245 43.478 0.00 0.00 32.20 2.67
595 596 4.005650 GTGGAGCATTCAACAGAGATTGA 58.994 43.478 0.00 0.00 36.80 2.57
597 598 4.019950 TGGAGCATTCAACAGAGATTGAGA 60.020 41.667 0.00 0.00 39.68 3.27
603 604 8.365647 AGCATTCAACAGAGATTGAGAAAATTT 58.634 29.630 0.00 0.00 39.68 1.82
605 606 8.922676 CATTCAACAGAGATTGAGAAAATTTGG 58.077 33.333 0.00 0.00 39.68 3.28
614 615 8.930846 AGATTGAGAAAATTTGGAGAAGAAGA 57.069 30.769 0.00 0.00 0.00 2.87
616 617 6.545504 TGAGAAAATTTGGAGAAGAAGACG 57.454 37.500 0.00 0.00 0.00 4.18
642 643 4.848357 TGGAAGAAGAGATGATTTGGGAC 58.152 43.478 0.00 0.00 0.00 4.46
681 682 3.558033 CTCCTCTAGGGTTGGTCTAGAC 58.442 54.545 14.87 14.87 38.50 2.59
695 696 4.844085 TGGTCTAGACAGATGGGAGAAAAA 59.156 41.667 23.91 0.00 32.09 1.94
756 757 9.295825 ACTACTGATTCACAATATTGACCAAAA 57.704 29.630 22.16 8.40 0.00 2.44
776 777 6.367422 CCAAAACAACAAGTTAGTCTGCAAAA 59.633 34.615 0.00 0.00 40.26 2.44
777 778 7.095439 CCAAAACAACAAGTTAGTCTGCAAAAA 60.095 33.333 0.00 0.00 40.26 1.94
779 780 5.650543 ACAACAAGTTAGTCTGCAAAAAGG 58.349 37.500 0.00 0.00 0.00 3.11
780 781 4.918810 ACAAGTTAGTCTGCAAAAAGGG 57.081 40.909 0.00 0.00 0.00 3.95
781 782 3.068165 ACAAGTTAGTCTGCAAAAAGGGC 59.932 43.478 0.00 0.00 0.00 5.19
782 783 3.229697 AGTTAGTCTGCAAAAAGGGCT 57.770 42.857 0.00 0.00 0.00 5.19
783 784 4.367039 AGTTAGTCTGCAAAAAGGGCTA 57.633 40.909 0.00 0.00 0.00 3.93
784 785 4.725490 AGTTAGTCTGCAAAAAGGGCTAA 58.275 39.130 0.00 0.00 0.00 3.09
786 787 5.416013 AGTTAGTCTGCAAAAAGGGCTAATC 59.584 40.000 0.95 0.00 0.00 1.75
818 836 5.347342 TCAAAACCATATTATTGCGCAAGG 58.653 37.500 28.62 23.32 38.28 3.61
820 838 1.613437 ACCATATTATTGCGCAAGGCC 59.387 47.619 28.62 0.00 42.61 5.19
821 839 1.067635 CCATATTATTGCGCAAGGCCC 60.068 52.381 28.62 0.00 42.61 5.80
836 854 0.819582 GGCCCAATGGATGAACACAG 59.180 55.000 0.00 0.00 0.00 3.66
842 860 0.033796 ATGGATGAACACAGGCCCTG 60.034 55.000 9.83 9.83 37.52 4.45
863 881 4.899502 TGAGGAAACAAGAGAGGATGAAC 58.100 43.478 0.00 0.00 0.00 3.18
866 884 3.244911 GGAAACAAGAGAGGATGAACCCA 60.245 47.826 0.00 0.00 40.05 4.51
894 912 2.193536 GGGTGTGTGTGTTGAGGCC 61.194 63.158 0.00 0.00 0.00 5.19
903 924 1.227823 TGTTGAGGCCTGGTTCACG 60.228 57.895 12.00 0.00 0.00 4.35
940 1386 0.036952 CCAGTGCATCTGACTTCGGT 60.037 55.000 15.22 0.00 46.27 4.69
1155 1601 4.161295 CGCCGCCTCATCCTGGAA 62.161 66.667 0.00 0.00 0.00 3.53
1174 1620 3.839432 CGTCCTTCCTCTCCCGCC 61.839 72.222 0.00 0.00 0.00 6.13
1230 1676 1.072331 GGCTTCTTCTTCCTGGACACA 59.928 52.381 0.00 0.00 0.00 3.72
1542 1988 3.751470 GTCTTTCTCGACGCCGAC 58.249 61.111 0.00 0.00 40.30 4.79
1573 2019 2.747460 GCCTGCTTGCGGTGATGA 60.747 61.111 0.54 0.00 0.00 2.92
1655 2101 3.319198 GACGGCCCCACTTCCTGA 61.319 66.667 0.00 0.00 0.00 3.86
1666 2112 3.054434 CCCACTTCCTGATAACATGGTGA 60.054 47.826 0.00 0.00 0.00 4.02
1981 2433 2.363788 TCACAAGACGGTACATCTGC 57.636 50.000 0.00 0.00 23.53 4.26
2006 2458 0.438830 GTGTTGCCGTCGACAATCTC 59.561 55.000 17.16 3.39 38.28 2.75
2019 2471 3.429960 CGACAATCTCTGATCCTTCTGCA 60.430 47.826 0.00 0.00 0.00 4.41
2026 2478 0.547471 TGATCCTTCTGCAGGGTGGA 60.547 55.000 15.13 18.11 44.12 4.02
2123 2575 0.900647 CTCAACCTGGAGACGGAGGT 60.901 60.000 0.00 0.00 44.94 3.85
2169 2621 3.365265 GCCAAGTTCCTGTGCCCG 61.365 66.667 0.00 0.00 0.00 6.13
2184 2636 0.032952 GCCCGTATGTGGCGAATCTA 59.967 55.000 0.00 0.00 39.48 1.98
2324 2822 8.645814 TTCTACAGGTTTACTCTTATCTGTGA 57.354 34.615 0.00 0.00 36.87 3.58
2328 2826 8.362464 ACAGGTTTACTCTTATCTGTGATGTA 57.638 34.615 0.00 0.00 34.65 2.29
2330 2828 9.469807 CAGGTTTACTCTTATCTGTGATGTATC 57.530 37.037 0.00 0.00 0.00 2.24
2347 2845 8.628630 TGATGTATCACCTGTTTATTTTCACA 57.371 30.769 0.00 0.00 0.00 3.58
2348 2846 9.241919 TGATGTATCACCTGTTTATTTTCACAT 57.758 29.630 0.00 0.00 0.00 3.21
2349 2847 9.722056 GATGTATCACCTGTTTATTTTCACATC 57.278 33.333 0.00 0.00 33.11 3.06
2350 2848 8.862325 TGTATCACCTGTTTATTTTCACATCT 57.138 30.769 0.00 0.00 0.00 2.90
2351 2849 8.729756 TGTATCACCTGTTTATTTTCACATCTG 58.270 33.333 0.00 0.00 0.00 2.90
2352 2850 6.573664 TCACCTGTTTATTTTCACATCTGG 57.426 37.500 0.00 0.00 0.00 3.86
2353 2851 6.303054 TCACCTGTTTATTTTCACATCTGGA 58.697 36.000 0.00 0.00 0.00 3.86
2354 2852 6.430925 TCACCTGTTTATTTTCACATCTGGAG 59.569 38.462 0.00 0.00 0.00 3.86
2355 2853 5.711976 ACCTGTTTATTTTCACATCTGGAGG 59.288 40.000 0.00 0.00 0.00 4.30
2356 2854 5.393461 CCTGTTTATTTTCACATCTGGAGGC 60.393 44.000 0.00 0.00 0.00 4.70
2357 2855 5.324409 TGTTTATTTTCACATCTGGAGGCT 58.676 37.500 0.00 0.00 0.00 4.58
2358 2856 5.774690 TGTTTATTTTCACATCTGGAGGCTT 59.225 36.000 0.00 0.00 0.00 4.35
2359 2857 6.071952 TGTTTATTTTCACATCTGGAGGCTTC 60.072 38.462 0.00 0.00 0.00 3.86
2360 2858 3.507162 TTTTCACATCTGGAGGCTTCA 57.493 42.857 0.00 0.00 0.00 3.02
2361 2859 3.726557 TTTCACATCTGGAGGCTTCAT 57.273 42.857 0.00 0.00 0.00 2.57
2362 2860 4.842531 TTTCACATCTGGAGGCTTCATA 57.157 40.909 0.00 0.00 0.00 2.15
2363 2861 3.827008 TCACATCTGGAGGCTTCATAC 57.173 47.619 0.00 0.00 0.00 2.39
2364 2862 3.378512 TCACATCTGGAGGCTTCATACT 58.621 45.455 0.00 0.00 0.00 2.12
2365 2863 3.133542 TCACATCTGGAGGCTTCATACTG 59.866 47.826 0.00 0.00 0.00 2.74
2366 2864 3.133542 CACATCTGGAGGCTTCATACTGA 59.866 47.826 0.00 0.00 0.00 3.41
2367 2865 3.972638 ACATCTGGAGGCTTCATACTGAT 59.027 43.478 0.00 0.00 0.00 2.90
2368 2866 4.411540 ACATCTGGAGGCTTCATACTGATT 59.588 41.667 0.00 0.00 0.00 2.57
2369 2867 5.104193 ACATCTGGAGGCTTCATACTGATTT 60.104 40.000 0.00 0.00 0.00 2.17
2370 2868 6.100279 ACATCTGGAGGCTTCATACTGATTTA 59.900 38.462 0.00 0.00 0.00 1.40
2371 2869 6.560003 TCTGGAGGCTTCATACTGATTTAA 57.440 37.500 0.00 0.00 0.00 1.52
2372 2870 6.586344 TCTGGAGGCTTCATACTGATTTAAG 58.414 40.000 0.00 0.00 0.00 1.85
2373 2871 6.156949 TCTGGAGGCTTCATACTGATTTAAGT 59.843 38.462 0.00 0.00 0.00 2.24
2374 2872 6.721318 TGGAGGCTTCATACTGATTTAAGTT 58.279 36.000 0.00 0.00 0.00 2.66
2491 3073 4.886163 TGTATGTCCAGTGGGGTTCTATA 58.114 43.478 9.92 0.00 38.11 1.31
2495 3077 4.108570 TGTCCAGTGGGGTTCTATAATGT 58.891 43.478 9.92 0.00 38.11 2.71
2661 3288 3.387699 TGAGGTGACAACTCTTGTGATCA 59.612 43.478 20.91 0.00 45.52 2.92
2673 3300 7.304497 ACTCTTGTGATCAGGTAGTAAAAGT 57.696 36.000 0.00 0.00 0.00 2.66
2708 3335 8.152246 CACATAATAATGGGAATTTGCCAGATT 58.848 33.333 15.24 16.91 42.59 2.40
2709 3336 9.378504 ACATAATAATGGGAATTTGCCAGATTA 57.621 29.630 20.08 20.08 42.59 1.75
2827 3468 7.492669 ACAATATATGTGCACACAGTTCTCTAC 59.507 37.037 24.37 0.00 45.48 2.59
3209 6836 1.745087 CTGGACCACAACCATATGCAC 59.255 52.381 0.00 0.00 36.79 4.57
3210 6837 1.354031 TGGACCACAACCATATGCACT 59.646 47.619 0.00 0.00 32.03 4.40
3211 6838 2.573915 TGGACCACAACCATATGCACTA 59.426 45.455 0.00 0.00 32.03 2.74
3212 6839 3.009584 TGGACCACAACCATATGCACTAA 59.990 43.478 0.00 0.00 32.03 2.24
3213 6840 3.627577 GGACCACAACCATATGCACTAAG 59.372 47.826 0.00 0.00 0.00 2.18
3214 6841 4.513442 GACCACAACCATATGCACTAAGA 58.487 43.478 0.00 0.00 0.00 2.10
3215 6842 4.517285 ACCACAACCATATGCACTAAGAG 58.483 43.478 0.00 0.00 0.00 2.85
3216 6843 3.313526 CCACAACCATATGCACTAAGAGC 59.686 47.826 0.00 0.00 0.00 4.09
3217 6844 4.194640 CACAACCATATGCACTAAGAGCT 58.805 43.478 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.775236 AGGTGATGATGGAAGAAAGCTAC 58.225 43.478 0.00 0.00 0.00 3.58
1 2 4.141620 GGAGGTGATGATGGAAGAAAGCTA 60.142 45.833 0.00 0.00 0.00 3.32
2 3 3.371380 GGAGGTGATGATGGAAGAAAGCT 60.371 47.826 0.00 0.00 0.00 3.74
3 4 2.948315 GGAGGTGATGATGGAAGAAAGC 59.052 50.000 0.00 0.00 0.00 3.51
4 5 3.054139 TGGGAGGTGATGATGGAAGAAAG 60.054 47.826 0.00 0.00 0.00 2.62
5 6 2.918934 TGGGAGGTGATGATGGAAGAAA 59.081 45.455 0.00 0.00 0.00 2.52
6 7 2.239654 GTGGGAGGTGATGATGGAAGAA 59.760 50.000 0.00 0.00 0.00 2.52
7 8 1.839994 GTGGGAGGTGATGATGGAAGA 59.160 52.381 0.00 0.00 0.00 2.87
8 9 1.133976 GGTGGGAGGTGATGATGGAAG 60.134 57.143 0.00 0.00 0.00 3.46
9 10 0.918983 GGTGGGAGGTGATGATGGAA 59.081 55.000 0.00 0.00 0.00 3.53
10 11 1.337384 CGGTGGGAGGTGATGATGGA 61.337 60.000 0.00 0.00 0.00 3.41
11 12 1.146930 CGGTGGGAGGTGATGATGG 59.853 63.158 0.00 0.00 0.00 3.51
12 13 0.541392 TTCGGTGGGAGGTGATGATG 59.459 55.000 0.00 0.00 0.00 3.07
13 14 1.285280 TTTCGGTGGGAGGTGATGAT 58.715 50.000 0.00 0.00 0.00 2.45
14 15 1.060729 TTTTCGGTGGGAGGTGATGA 58.939 50.000 0.00 0.00 0.00 2.92
15 16 1.904287 TTTTTCGGTGGGAGGTGATG 58.096 50.000 0.00 0.00 0.00 3.07
50 51 1.075536 ACCACATGGGAGAAAAGACCC 59.924 52.381 0.00 0.00 45.74 4.46
51 52 2.162681 CACCACATGGGAGAAAAGACC 58.837 52.381 0.00 0.00 41.15 3.85
52 53 3.077359 CTCACCACATGGGAGAAAAGAC 58.923 50.000 0.00 0.00 41.15 3.01
53 54 2.978978 TCTCACCACATGGGAGAAAAGA 59.021 45.455 13.58 0.00 38.04 2.52
54 55 3.077359 GTCTCACCACATGGGAGAAAAG 58.923 50.000 16.20 0.91 39.02 2.27
55 56 2.224769 GGTCTCACCACATGGGAGAAAA 60.225 50.000 16.20 0.00 39.02 2.29
56 57 1.351017 GGTCTCACCACATGGGAGAAA 59.649 52.381 16.20 0.00 39.02 2.52
57 58 0.984230 GGTCTCACCACATGGGAGAA 59.016 55.000 16.20 3.92 39.02 2.87
58 59 0.909610 GGGTCTCACCACATGGGAGA 60.910 60.000 12.48 12.48 39.02 3.71
59 60 1.200760 TGGGTCTCACCACATGGGAG 61.201 60.000 0.00 6.48 39.02 4.30
60 61 1.151921 TGGGTCTCACCACATGGGA 60.152 57.895 0.00 0.00 41.02 4.37
61 62 3.494506 TGGGTCTCACCACATGGG 58.505 61.111 2.32 0.00 41.02 4.00
69 70 0.335361 TCCTCTAGGGTGGGTCTCAC 59.665 60.000 0.00 0.00 45.34 3.51
70 71 0.631753 CTCCTCTAGGGTGGGTCTCA 59.368 60.000 0.00 0.00 36.25 3.27
71 72 0.105913 CCTCCTCTAGGGTGGGTCTC 60.106 65.000 9.38 0.00 43.17 3.36
72 73 2.020137 CCTCCTCTAGGGTGGGTCT 58.980 63.158 9.38 0.00 43.17 3.85
73 74 1.762858 GCCTCCTCTAGGGTGGGTC 60.763 68.421 15.80 2.28 46.65 4.46
74 75 2.369001 GCCTCCTCTAGGGTGGGT 59.631 66.667 15.80 0.00 46.65 4.51
75 76 2.446802 GGCCTCCTCTAGGGTGGG 60.447 72.222 15.80 7.00 46.65 4.61
76 77 2.066999 GTGGCCTCCTCTAGGGTGG 61.067 68.421 3.32 11.83 46.65 4.61
77 78 1.306141 TGTGGCCTCCTCTAGGGTG 60.306 63.158 3.32 0.00 46.65 4.61
78 79 1.306226 GTGTGGCCTCCTCTAGGGT 60.306 63.158 3.32 0.00 46.65 4.34
79 80 0.618968 AAGTGTGGCCTCCTCTAGGG 60.619 60.000 3.32 0.00 46.65 3.53
81 82 1.859302 AGAAGTGTGGCCTCCTCTAG 58.141 55.000 3.32 0.00 0.00 2.43
82 83 2.327325 AAGAAGTGTGGCCTCCTCTA 57.673 50.000 3.32 0.00 0.00 2.43
83 84 1.439543 AAAGAAGTGTGGCCTCCTCT 58.560 50.000 3.32 0.00 0.00 3.69
84 85 2.278332 AAAAGAAGTGTGGCCTCCTC 57.722 50.000 3.32 0.00 0.00 3.71
85 86 2.755952 AAAAAGAAGTGTGGCCTCCT 57.244 45.000 3.32 0.00 0.00 3.69
86 87 2.557056 GGTAAAAAGAAGTGTGGCCTCC 59.443 50.000 3.32 0.00 0.00 4.30
87 88 3.219281 TGGTAAAAAGAAGTGTGGCCTC 58.781 45.455 3.32 0.00 0.00 4.70
88 89 3.306472 TGGTAAAAAGAAGTGTGGCCT 57.694 42.857 3.32 0.00 0.00 5.19
89 90 4.556233 GATTGGTAAAAAGAAGTGTGGCC 58.444 43.478 0.00 0.00 0.00 5.36
90 91 4.556233 GGATTGGTAAAAAGAAGTGTGGC 58.444 43.478 0.00 0.00 0.00 5.01
91 92 4.586841 TGGGATTGGTAAAAAGAAGTGTGG 59.413 41.667 0.00 0.00 0.00 4.17
92 93 5.782893 TGGGATTGGTAAAAAGAAGTGTG 57.217 39.130 0.00 0.00 0.00 3.82
93 94 6.685368 GCTTTGGGATTGGTAAAAAGAAGTGT 60.685 38.462 0.00 0.00 31.01 3.55
94 95 5.696270 GCTTTGGGATTGGTAAAAAGAAGTG 59.304 40.000 0.00 0.00 31.01 3.16
95 96 5.365314 TGCTTTGGGATTGGTAAAAAGAAGT 59.635 36.000 0.00 0.00 31.01 3.01
96 97 5.852827 TGCTTTGGGATTGGTAAAAAGAAG 58.147 37.500 0.00 0.00 31.01 2.85
97 98 5.878406 TGCTTTGGGATTGGTAAAAAGAA 57.122 34.783 0.00 0.00 31.01 2.52
98 99 5.779771 AGATGCTTTGGGATTGGTAAAAAGA 59.220 36.000 0.00 0.00 31.01 2.52
99 100 6.041423 AGATGCTTTGGGATTGGTAAAAAG 57.959 37.500 0.00 0.00 0.00 2.27
100 101 5.779771 AGAGATGCTTTGGGATTGGTAAAAA 59.220 36.000 0.00 0.00 0.00 1.94
101 102 5.332743 AGAGATGCTTTGGGATTGGTAAAA 58.667 37.500 0.00 0.00 0.00 1.52
102 103 4.934356 AGAGATGCTTTGGGATTGGTAAA 58.066 39.130 0.00 0.00 0.00 2.01
103 104 4.591321 AGAGATGCTTTGGGATTGGTAA 57.409 40.909 0.00 0.00 0.00 2.85
104 105 4.228210 AGAAGAGATGCTTTGGGATTGGTA 59.772 41.667 0.00 0.00 36.83 3.25
105 106 3.011032 AGAAGAGATGCTTTGGGATTGGT 59.989 43.478 0.00 0.00 36.83 3.67
106 107 3.629087 AGAAGAGATGCTTTGGGATTGG 58.371 45.455 0.00 0.00 36.83 3.16
107 108 4.677250 GCAAGAAGAGATGCTTTGGGATTG 60.677 45.833 0.00 0.00 39.46 2.67
108 109 3.446516 GCAAGAAGAGATGCTTTGGGATT 59.553 43.478 0.00 0.00 39.46 3.01
109 110 3.022406 GCAAGAAGAGATGCTTTGGGAT 58.978 45.455 0.00 0.00 39.46 3.85
110 111 2.440409 GCAAGAAGAGATGCTTTGGGA 58.560 47.619 0.00 0.00 39.46 4.37
111 112 1.131883 CGCAAGAAGAGATGCTTTGGG 59.868 52.381 0.00 0.00 40.39 4.12
112 113 1.808945 ACGCAAGAAGAGATGCTTTGG 59.191 47.619 0.00 0.00 40.39 3.28
113 114 3.549299 AACGCAAGAAGAGATGCTTTG 57.451 42.857 0.00 0.00 40.39 2.77
178 179 2.972021 TGGCTGATTCCGATGAAGGATA 59.028 45.455 0.00 0.00 40.48 2.59
197 198 7.625469 AGATAAGGAAAGGAAGTCTTAGTTGG 58.375 38.462 0.00 0.00 34.78 3.77
199 200 9.771140 TCTAGATAAGGAAAGGAAGTCTTAGTT 57.229 33.333 0.00 0.00 34.78 2.24
219 220 1.067212 GTTCGTCGTGCCCATCTAGAT 59.933 52.381 0.00 0.00 0.00 1.98
226 227 2.933878 AAAGCAGTTCGTCGTGCCCA 62.934 55.000 2.97 0.00 40.81 5.36
239 240 5.067805 ACTTCCTACAAAGAAACCAAAGCAG 59.932 40.000 0.00 0.00 0.00 4.24
306 307 1.470494 CTCGCTCAGCTGTAGAGAACA 59.530 52.381 22.11 0.00 35.09 3.18
324 325 4.516195 GCCGCCCCTCTCGTTCTC 62.516 72.222 0.00 0.00 0.00 2.87
377 378 2.437281 CTCACCCCTAGCTGATTGTCAT 59.563 50.000 0.00 0.00 0.00 3.06
388 389 1.340114 GGTGCTTTTCCTCACCCCTAG 60.340 57.143 0.15 0.00 45.26 3.02
389 390 0.696501 GGTGCTTTTCCTCACCCCTA 59.303 55.000 0.15 0.00 45.26 3.53
425 426 7.921786 ATTTCAAATCCAAGTTCGATCTGTA 57.078 32.000 0.00 0.00 0.00 2.74
426 427 6.824305 ATTTCAAATCCAAGTTCGATCTGT 57.176 33.333 0.00 0.00 0.00 3.41
427 428 9.065871 GTTAATTTCAAATCCAAGTTCGATCTG 57.934 33.333 0.00 0.00 0.00 2.90
428 429 9.014297 AGTTAATTTCAAATCCAAGTTCGATCT 57.986 29.630 0.00 0.00 0.00 2.75
497 498 6.663953 AGTAAGGGAAATTAAAGAAGGGAAGC 59.336 38.462 0.00 0.00 0.00 3.86
502 503 9.602568 GAGAGTAGTAAGGGAAATTAAAGAAGG 57.397 37.037 0.00 0.00 0.00 3.46
506 507 6.985059 CCGGAGAGTAGTAAGGGAAATTAAAG 59.015 42.308 0.00 0.00 0.00 1.85
532 533 2.434884 CTGTAGCTGGGTGCCACG 60.435 66.667 0.00 0.00 44.23 4.94
536 537 2.125512 CCGACTGTAGCTGGGTGC 60.126 66.667 0.00 0.00 43.29 5.01
555 556 0.818296 ACACCACGTCTAGCAGGATC 59.182 55.000 0.00 0.00 0.00 3.36
566 567 0.179032 TTGAATGCTCCACACCACGT 60.179 50.000 0.00 0.00 0.00 4.49
568 569 1.267806 CTGTTGAATGCTCCACACCAC 59.732 52.381 0.00 0.00 0.00 4.16
586 587 8.332996 TCTTCTCCAAATTTTCTCAATCTCTG 57.667 34.615 0.00 0.00 0.00 3.35
594 595 6.202954 TGACGTCTTCTTCTCCAAATTTTCTC 59.797 38.462 17.92 0.00 0.00 2.87
595 596 6.055588 TGACGTCTTCTTCTCCAAATTTTCT 58.944 36.000 17.92 0.00 0.00 2.52
597 598 6.294176 CCATGACGTCTTCTTCTCCAAATTTT 60.294 38.462 17.92 0.00 0.00 1.82
603 604 2.525368 TCCATGACGTCTTCTTCTCCA 58.475 47.619 17.92 0.00 0.00 3.86
605 606 4.442375 TCTTCCATGACGTCTTCTTCTC 57.558 45.455 17.92 0.00 0.00 2.87
614 615 5.350504 AATCATCTCTTCTTCCATGACGT 57.649 39.130 0.00 0.00 0.00 4.34
616 617 5.298777 CCCAAATCATCTCTTCTTCCATGAC 59.701 44.000 0.00 0.00 0.00 3.06
642 643 1.448540 GGCCACGAGTGATCACCAG 60.449 63.158 22.21 17.82 0.00 4.00
716 717 4.669866 TCAGTAGTAGAAGGTGAGGGAA 57.330 45.455 0.00 0.00 0.00 3.97
717 718 4.883021 ATCAGTAGTAGAAGGTGAGGGA 57.117 45.455 0.00 0.00 0.00 4.20
718 719 4.956700 TGAATCAGTAGTAGAAGGTGAGGG 59.043 45.833 0.00 0.00 0.00 4.30
719 720 5.419155 TGTGAATCAGTAGTAGAAGGTGAGG 59.581 44.000 0.00 0.00 0.00 3.86
729 730 9.952030 TTTGGTCAATATTGTGAATCAGTAGTA 57.048 29.630 14.97 0.00 0.00 1.82
756 757 5.394115 CCCTTTTTGCAGACTAACTTGTTGT 60.394 40.000 0.00 0.00 0.00 3.32
818 836 0.819582 CCTGTGTTCATCCATTGGGC 59.180 55.000 2.09 0.00 0.00 5.36
820 838 0.819582 GGCCTGTGTTCATCCATTGG 59.180 55.000 0.00 0.00 0.00 3.16
821 839 0.819582 GGGCCTGTGTTCATCCATTG 59.180 55.000 0.84 0.00 0.00 2.82
836 854 0.693049 TCTCTTGTTTCCTCAGGGCC 59.307 55.000 0.00 0.00 0.00 5.80
842 860 4.257731 GGTTCATCCTCTCTTGTTTCCTC 58.742 47.826 0.00 0.00 0.00 3.71
863 881 3.737172 CACCCTCGCGCTTTTGGG 61.737 66.667 18.03 18.03 44.89 4.12
866 884 2.203153 ACACACCCTCGCGCTTTT 60.203 55.556 5.56 0.00 0.00 2.27
894 912 1.526575 AATTGCCAGGCGTGAACCAG 61.527 55.000 8.24 0.00 0.00 4.00
903 924 3.004946 AGCCCCAAATTGCCAGGC 61.005 61.111 3.66 3.66 44.20 4.85
1155 1601 2.362632 CGGGAGAGGAAGGACGGT 60.363 66.667 0.00 0.00 0.00 4.83
1230 1676 3.801997 CGGGGCAGCTTCTGGGAT 61.802 66.667 0.00 0.00 31.21 3.85
1470 1916 1.081277 GAGGAAGGTGGAGGTCCCT 59.919 63.158 0.00 0.00 35.38 4.20
1568 2014 0.034574 CCCCATTGGTCGGTTCATCA 60.035 55.000 1.20 0.00 0.00 3.07
1573 2019 1.613061 GGATCCCCATTGGTCGGTT 59.387 57.895 0.00 0.00 34.77 4.44
1578 2024 2.696125 AGGCGGATCCCCATTGGT 60.696 61.111 18.32 0.00 34.51 3.67
1646 2092 4.818546 GGATCACCATGTTATCAGGAAGTG 59.181 45.833 0.00 0.00 35.97 3.16
1666 2112 1.692042 CAGGGGAGCAGAGGTGGAT 60.692 63.158 0.00 0.00 0.00 3.41
2019 2471 1.305718 GACAGAGAGCCTCCACCCT 60.306 63.158 0.00 0.00 0.00 4.34
2026 2478 1.028905 GATGCTACGACAGAGAGCCT 58.971 55.000 0.00 0.00 35.24 4.58
2052 2504 1.722034 AGAACAAGGAGCCACTCTGA 58.278 50.000 0.00 0.00 0.00 3.27
2123 2575 0.108992 GTTGCGTACCCTCGACATCA 60.109 55.000 0.00 0.00 0.00 3.07
2169 2621 5.502544 GCAAGAACTTAGATTCGCCACATAC 60.503 44.000 0.00 0.00 33.57 2.39
2184 2636 1.075659 GGCTCCCAGGCAAGAACTT 59.924 57.895 0.00 0.00 40.97 2.66
2278 2730 9.088512 GTAGAATACATCGAAACAGAACTGAAT 57.911 33.333 8.87 0.00 42.43 2.57
2323 2821 9.722056 GATGTGAAAATAAACAGGTGATACATC 57.278 33.333 0.00 0.00 34.73 3.06
2324 2822 9.466497 AGATGTGAAAATAAACAGGTGATACAT 57.534 29.630 0.00 0.00 0.00 2.29
2328 2826 6.947733 TCCAGATGTGAAAATAAACAGGTGAT 59.052 34.615 0.00 0.00 0.00 3.06
2330 2828 6.349611 CCTCCAGATGTGAAAATAAACAGGTG 60.350 42.308 0.00 0.00 0.00 4.00
2332 2830 5.393461 GCCTCCAGATGTGAAAATAAACAGG 60.393 44.000 0.00 0.00 0.00 4.00
2333 2831 5.416952 AGCCTCCAGATGTGAAAATAAACAG 59.583 40.000 0.00 0.00 0.00 3.16
2335 2833 5.904362 AGCCTCCAGATGTGAAAATAAAC 57.096 39.130 0.00 0.00 0.00 2.01
2337 2835 5.569355 TGAAGCCTCCAGATGTGAAAATAA 58.431 37.500 0.00 0.00 0.00 1.40
2338 2836 5.178096 TGAAGCCTCCAGATGTGAAAATA 57.822 39.130 0.00 0.00 0.00 1.40
2339 2837 4.038271 TGAAGCCTCCAGATGTGAAAAT 57.962 40.909 0.00 0.00 0.00 1.82
2340 2838 3.507162 TGAAGCCTCCAGATGTGAAAA 57.493 42.857 0.00 0.00 0.00 2.29
2341 2839 3.726557 ATGAAGCCTCCAGATGTGAAA 57.273 42.857 0.00 0.00 0.00 2.69
2342 2840 3.776969 AGTATGAAGCCTCCAGATGTGAA 59.223 43.478 0.00 0.00 0.00 3.18
2343 2841 3.133542 CAGTATGAAGCCTCCAGATGTGA 59.866 47.826 0.00 0.00 39.69 3.58
2344 2842 3.133542 TCAGTATGAAGCCTCCAGATGTG 59.866 47.826 0.00 0.00 45.97 3.21
2345 2843 3.378512 TCAGTATGAAGCCTCCAGATGT 58.621 45.455 0.00 0.00 45.97 3.06
2366 2864 9.567848 CCGCATACAATAAACTGAAACTTAAAT 57.432 29.630 0.00 0.00 0.00 1.40
2367 2865 7.539366 GCCGCATACAATAAACTGAAACTTAAA 59.461 33.333 0.00 0.00 0.00 1.52
2368 2866 7.024768 GCCGCATACAATAAACTGAAACTTAA 58.975 34.615 0.00 0.00 0.00 1.85
2369 2867 6.373216 AGCCGCATACAATAAACTGAAACTTA 59.627 34.615 0.00 0.00 0.00 2.24
2370 2868 5.183140 AGCCGCATACAATAAACTGAAACTT 59.817 36.000 0.00 0.00 0.00 2.66
2371 2869 4.700213 AGCCGCATACAATAAACTGAAACT 59.300 37.500 0.00 0.00 0.00 2.66
2372 2870 4.981794 AGCCGCATACAATAAACTGAAAC 58.018 39.130 0.00 0.00 0.00 2.78
2373 2871 5.398169 CAAGCCGCATACAATAAACTGAAA 58.602 37.500 0.00 0.00 0.00 2.69
2374 2872 4.674101 GCAAGCCGCATACAATAAACTGAA 60.674 41.667 0.00 0.00 41.79 3.02
2379 2877 5.766150 ATAAGCAAGCCGCATACAATAAA 57.234 34.783 0.00 0.00 46.13 1.40
2389 2887 2.280628 AGACTACAATAAGCAAGCCGC 58.719 47.619 0.00 0.00 42.91 6.53
2390 2888 3.932710 TGAAGACTACAATAAGCAAGCCG 59.067 43.478 0.00 0.00 0.00 5.52
2491 3073 6.773976 TCCTGTTTCTTTCAGTTTCACATT 57.226 33.333 0.00 0.00 0.00 2.71
2689 3316 9.772605 ATCATATAATCTGGCAAATTCCCATTA 57.227 29.630 0.00 0.00 0.00 1.90
2709 3336 9.355916 TGTAACTGTCAGCTCTAGTAATCATAT 57.644 33.333 0.00 0.00 0.00 1.78
2827 3468 8.807118 TGAGGACTGGCTTAATTAGATATACAG 58.193 37.037 0.00 0.00 0.00 2.74
2829 3470 8.808092 AGTGAGGACTGGCTTAATTAGATATAC 58.192 37.037 0.00 0.00 0.00 1.47
2831 3472 7.863901 AGTGAGGACTGGCTTAATTAGATAT 57.136 36.000 0.00 0.00 0.00 1.63
2834 3475 6.195700 AGTAGTGAGGACTGGCTTAATTAGA 58.804 40.000 0.00 0.00 33.21 2.10
2835 3476 6.472686 AGTAGTGAGGACTGGCTTAATTAG 57.527 41.667 0.00 0.00 33.21 1.73
2837 3478 6.195700 TCTAGTAGTGAGGACTGGCTTAATT 58.804 40.000 0.00 0.00 33.21 1.40
2838 3479 5.767670 TCTAGTAGTGAGGACTGGCTTAAT 58.232 41.667 0.00 0.00 33.21 1.40
2839 3480 5.188988 TCTAGTAGTGAGGACTGGCTTAA 57.811 43.478 0.00 0.00 33.21 1.85
2840 3481 4.857130 TCTAGTAGTGAGGACTGGCTTA 57.143 45.455 0.00 0.00 33.21 3.09
2841 3482 3.741245 TCTAGTAGTGAGGACTGGCTT 57.259 47.619 0.00 0.00 33.21 4.35
3032 3674 5.300969 TCAGCTTCACAATCATACTTTGC 57.699 39.130 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.