Multiple sequence alignment - TraesCS5A01G251200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5A01G251200
chr5A
100.000
3953
0
0
1
3953
466988467
466984515
0.000000e+00
7300
1
TraesCS5A01G251200
chr5D
94.531
3968
148
23
16
3950
365326999
365323068
0.000000e+00
6061
2
TraesCS5A01G251200
chr5B
93.390
3555
136
32
417
3950
431800606
431797130
0.000000e+00
5171
3
TraesCS5A01G251200
chr5B
96.697
333
10
1
16
348
431807171
431806840
1.610000e-153
553
4
TraesCS5A01G251200
chr5B
97.753
89
2
0
333
421
431806657
431806569
1.900000e-33
154
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5A01G251200
chr5A
466984515
466988467
3952
True
7300.0
7300
100.000
1
3953
1
chr5A.!!$R1
3952
1
TraesCS5A01G251200
chr5D
365323068
365326999
3931
True
6061.0
6061
94.531
16
3950
1
chr5D.!!$R1
3934
2
TraesCS5A01G251200
chr5B
431797130
431800606
3476
True
5171.0
5171
93.390
417
3950
1
chr5B.!!$R1
3533
3
TraesCS5A01G251200
chr5B
431806569
431807171
602
True
353.5
553
97.225
16
421
2
chr5B.!!$R2
405
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
665
864
0.319900
TGCTTCTGCGTCCTTCTCAC
60.32
55.0
0.0
0.0
43.34
3.51
F
1432
1631
0.040204
ATGTTCAAGCCCTTCCCCTG
59.96
55.0
0.0
0.0
0.00
4.45
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1572
1771
1.533625
TTGGAGCAAATGGTTCCTCG
58.466
50.0
0.0
0.0
46.38
4.63
R
3112
3339
0.250234
CACTCTGCGGGGAAGATCAA
59.750
55.0
0.0
0.0
0.00
2.57
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
296
297
4.062991
GTCACCATGGGACCGAAATATAC
58.937
47.826
18.09
0.00
0.00
1.47
322
323
2.041081
TCCTGTCTGGGGTTTATGGTTG
59.959
50.000
0.00
0.00
36.20
3.77
412
611
1.178534
TGCTTAACAACTGCCCTGGC
61.179
55.000
0.00
0.00
42.35
4.85
459
658
6.488006
AGAATTTTATGAAGCCATGCTATCGT
59.512
34.615
0.00
0.00
38.25
3.73
477
676
4.929819
TCGTCTATTGCTTGCTATGGTA
57.070
40.909
0.17
0.00
0.00
3.25
529
728
5.047802
TGAAATGAGCAAACAAGAAGATCCC
60.048
40.000
0.00
0.00
0.00
3.85
561
760
1.473258
TTTGTGGCAGCAACTTGAGT
58.527
45.000
0.43
0.00
0.00
3.41
569
768
3.127721
GGCAGCAACTTGAGTCTATTTCC
59.872
47.826
0.00
0.00
0.00
3.13
578
777
2.027192
TGAGTCTATTTCCTGGTGTGCC
60.027
50.000
0.00
0.00
0.00
5.01
602
801
6.142320
CCAGACTGTTTAACTCGAAAATTTGC
59.858
38.462
0.93
0.00
0.00
3.68
611
810
4.527564
ACTCGAAAATTTGCAGAAACTCG
58.472
39.130
0.00
0.00
0.00
4.18
665
864
0.319900
TGCTTCTGCGTCCTTCTCAC
60.320
55.000
0.00
0.00
43.34
3.51
884
1083
3.492102
TGGCCTACTATTGATTGCTCC
57.508
47.619
3.32
0.00
0.00
4.70
914
1113
8.401709
GTGATCAGTTTGAAGTCTTCTTTCTTT
58.598
33.333
13.67
0.68
33.64
2.52
916
1115
7.321745
TCAGTTTGAAGTCTTCTTTCTTTCC
57.678
36.000
13.67
0.00
33.64
3.13
925
1124
5.063880
GTCTTCTTTCTTTCCCTTGCTACA
58.936
41.667
0.00
0.00
0.00
2.74
1074
1273
2.612972
GGATCGGAGTTTCAGCAGTGAA
60.613
50.000
0.00
0.00
41.13
3.18
1185
1384
1.283029
CTGGAGAGGGGAGAAAATGCA
59.717
52.381
0.00
0.00
0.00
3.96
1188
1387
2.555227
GGAGAGGGGAGAAAATGCACAA
60.555
50.000
0.00
0.00
0.00
3.33
1361
1560
4.480115
TCAACACCTTGTCTCTCTCCTAA
58.520
43.478
0.00
0.00
0.00
2.69
1367
1566
4.714308
ACCTTGTCTCTCTCCTAATGGAAG
59.286
45.833
0.00
0.00
42.66
3.46
1432
1631
0.040204
ATGTTCAAGCCCTTCCCCTG
59.960
55.000
0.00
0.00
0.00
4.45
1528
1727
0.175073
GGGTGGTGCCTACTACTTCG
59.825
60.000
0.00
0.00
38.26
3.79
1572
1771
2.287909
TGCAATTGTAAAGCCAACCGAC
60.288
45.455
7.40
0.00
0.00
4.79
1635
1834
2.450502
ACCCTTGGACAGCCAGGT
60.451
61.111
0.00
0.00
46.91
4.00
1792
1991
2.756760
ACTGTTGGCTGCAATCATAAGG
59.243
45.455
0.50
0.00
0.00
2.69
1806
2005
6.690530
CAATCATAAGGTGTTCCACAACAAT
58.309
36.000
0.00
0.00
44.32
2.71
1813
2012
3.115554
GTGTTCCACAACAATTCACAGC
58.884
45.455
0.00
0.00
44.32
4.40
2028
2227
3.181475
TGCAGACCGAACTCATTCCTATC
60.181
47.826
0.00
0.00
0.00
2.08
2091
2290
1.462616
TTGAATGGATTCACTGGCCG
58.537
50.000
0.00
0.00
45.63
6.13
2149
2348
7.042950
TGAATACATTGCAAATTTGGATCCTG
58.957
34.615
19.47
15.45
0.00
3.86
2159
2358
7.099120
GCAAATTTGGATCCTGTAAAAGATGT
58.901
34.615
19.47
0.00
0.00
3.06
2163
2362
6.817765
TTGGATCCTGTAAAAGATGTTGAC
57.182
37.500
14.23
0.00
0.00
3.18
2169
2368
5.181811
TCCTGTAAAAGATGTTGACATGCTG
59.818
40.000
0.57
0.00
36.57
4.41
2172
2371
0.169672
AAGATGTTGACATGCTGCGC
59.830
50.000
0.00
0.00
36.57
6.09
2538
2740
1.071605
CAAAGCTAGCCGAGTGTGAC
58.928
55.000
12.13
0.00
0.00
3.67
2681
2883
1.279846
TGGGAAAGCTAAACCCTACCG
59.720
52.381
19.04
0.00
43.59
4.02
2999
3221
2.254350
GGTGTTTTCTTCGCGGCC
59.746
61.111
6.13
0.00
0.00
6.13
3002
3224
4.753877
GTTTTCTTCGCGGCCGCC
62.754
66.667
42.07
25.29
37.98
6.13
3021
3243
1.449778
GGAACGGAAGCAGCCCTAC
60.450
63.158
0.00
0.00
0.00
3.18
3069
3296
2.593026
GGATCGTGGAGAGGAGAAGAT
58.407
52.381
0.00
0.00
0.00
2.40
3104
3331
4.025480
CGATAAAAATAAAGACCGTCCCCG
60.025
45.833
0.00
0.00
0.00
5.73
3108
3335
0.251073
ATAAAGACCGTCCCCGTTGG
59.749
55.000
0.00
0.00
0.00
3.77
3112
3339
3.912745
GACCGTCCCCGTTGGCATT
62.913
63.158
0.00
0.00
0.00
3.56
3113
3340
2.675075
CCGTCCCCGTTGGCATTT
60.675
61.111
0.00
0.00
0.00
2.32
3123
3350
1.134946
CGTTGGCATTTGATCTTCCCC
59.865
52.381
0.00
0.00
0.00
4.81
3124
3351
1.134946
GTTGGCATTTGATCTTCCCCG
59.865
52.381
0.00
0.00
0.00
5.73
3125
3352
1.037030
TGGCATTTGATCTTCCCCGC
61.037
55.000
0.00
0.00
0.00
6.13
3127
3354
0.383231
GCATTTGATCTTCCCCGCAG
59.617
55.000
0.00
0.00
0.00
5.18
3381
3610
4.233632
TGAATATGCACCTGGATGTTGA
57.766
40.909
0.00
0.00
28.38
3.18
3382
3611
3.947196
TGAATATGCACCTGGATGTTGAC
59.053
43.478
0.00
0.00
28.38
3.18
3404
3633
5.949233
CACGCATGTGCACGTATATATAT
57.051
39.130
12.10
0.00
41.32
0.86
3405
3634
5.951698
CACGCATGTGCACGTATATATATC
58.048
41.667
12.10
0.00
41.32
1.63
3406
3635
5.743872
CACGCATGTGCACGTATATATATCT
59.256
40.000
12.10
0.00
41.32
1.98
3407
3636
6.910433
CACGCATGTGCACGTATATATATCTA
59.090
38.462
12.10
0.00
41.32
1.98
3408
3637
7.431084
CACGCATGTGCACGTATATATATCTAA
59.569
37.037
12.10
0.00
41.32
2.10
3409
3638
8.135529
ACGCATGTGCACGTATATATATCTAAT
58.864
33.333
12.10
0.00
41.48
1.73
3479
3708
2.201732
GCGTGAGTTGTTGAGAGAACA
58.798
47.619
0.00
0.00
31.80
3.18
3490
3719
7.126421
AGTTGTTGAGAGAACATGGGATAGTAT
59.874
37.037
0.00
0.00
31.80
2.12
3504
3733
7.610580
TGGGATAGTATGTTGATGTGATACA
57.389
36.000
0.00
0.00
0.00
2.29
3520
3749
4.447054
GTGATACAAGCGAATGATCTGGAG
59.553
45.833
0.00
0.00
0.00
3.86
3533
3763
1.672356
CTGGAGCTTGGTTCGGGTG
60.672
63.158
0.00
0.00
0.00
4.61
3549
3779
1.152546
GTGGTGTCAAAAGGGCCCT
60.153
57.895
22.28
22.28
0.00
5.19
3568
3800
2.271800
CTCCATGTGCCGTAGAAACTC
58.728
52.381
0.00
0.00
0.00
3.01
3577
3809
1.349259
CGTAGAAACTCGCGGGTTGG
61.349
60.000
27.54
8.85
0.00
3.77
3578
3810
1.375013
TAGAAACTCGCGGGTTGGC
60.375
57.895
27.54
20.26
0.00
4.52
3579
3811
1.823169
TAGAAACTCGCGGGTTGGCT
61.823
55.000
27.54
25.87
0.00
4.75
3580
3812
2.668550
AAACTCGCGGGTTGGCTC
60.669
61.111
27.54
0.00
0.00
4.70
3581
3813
4.699522
AACTCGCGGGTTGGCTCC
62.700
66.667
26.19
0.00
0.00
4.70
3655
3887
2.265683
CAGATGTCGACATGTCTGGTG
58.734
52.381
34.48
14.85
36.57
4.17
3667
3899
1.367471
TCTGGTGACGGAAGCACAG
59.633
57.895
0.00
0.00
44.59
3.66
3680
3912
3.471680
GAAGCACAGATCTATTGACCCC
58.528
50.000
7.54
0.00
0.00
4.95
3682
3914
1.871080
CACAGATCTATTGACCCCGC
58.129
55.000
0.00
0.00
0.00
6.13
3706
3938
4.508128
CCCGCGACGTATGCACCT
62.508
66.667
8.23
0.00
0.00
4.00
3711
3943
1.226974
CGACGTATGCACCTGGGAG
60.227
63.158
0.00
0.00
0.00
4.30
3789
4021
2.079925
CTTCTCCGAGCCCTTCTTTTG
58.920
52.381
0.00
0.00
0.00
2.44
3839
4071
1.226802
CGCCAGAGTGAGACCATCG
60.227
63.158
0.00
0.00
0.00
3.84
3842
4074
0.457851
CCAGAGTGAGACCATCGTCC
59.542
60.000
0.00
0.00
40.12
4.79
3895
4127
5.673337
TGTGAACTACAGATGAAAACTGC
57.327
39.130
0.00
0.00
40.90
4.40
3898
4130
4.515191
TGAACTACAGATGAAAACTGCACC
59.485
41.667
0.00
0.00
40.90
5.01
3923
4155
1.204146
AGTCCAAGCCCATCACGTAT
58.796
50.000
0.00
0.00
0.00
3.06
3924
4156
1.559682
AGTCCAAGCCCATCACGTATT
59.440
47.619
0.00
0.00
0.00
1.89
3925
4157
2.769663
AGTCCAAGCCCATCACGTATTA
59.230
45.455
0.00
0.00
0.00
0.98
3926
4158
3.131396
GTCCAAGCCCATCACGTATTAG
58.869
50.000
0.00
0.00
0.00
1.73
3950
4182
3.999663
AGATCAGAAAACTTCAAGCGAGG
59.000
43.478
0.00
0.00
0.00
4.63
3951
4183
3.469008
TCAGAAAACTTCAAGCGAGGA
57.531
42.857
0.00
0.00
0.00
3.71
3952
4184
3.131396
TCAGAAAACTTCAAGCGAGGAC
58.869
45.455
0.00
0.00
0.00
3.85
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
108
109
4.989279
ACAGCTTCTCACAACAACAAAT
57.011
36.364
0.00
0.00
0.00
2.32
256
257
5.248477
TGGTGACAGTAGGCTTTAGATCTTT
59.752
40.000
0.00
0.00
35.01
2.52
257
258
4.777896
TGGTGACAGTAGGCTTTAGATCTT
59.222
41.667
0.00
0.00
35.01
2.40
296
297
5.133221
CCATAAACCCCAGACAGGAATAAG
58.867
45.833
0.00
0.00
41.22
1.73
322
323
8.273780
AGATTCCACATCTTCACTTAATCAAC
57.726
34.615
0.00
0.00
0.00
3.18
459
658
4.653801
TCCTGTACCATAGCAAGCAATAGA
59.346
41.667
0.00
0.00
0.00
1.98
491
690
8.801715
TTGCTCATTTCAGTATTTCTGTTTTC
57.198
30.769
0.00
0.00
43.97
2.29
493
692
8.196771
TGTTTGCTCATTTCAGTATTTCTGTTT
58.803
29.630
0.00
0.00
43.97
2.83
529
728
2.204237
GCCACAAAACAAAGCCTCTTG
58.796
47.619
0.00
0.00
0.00
3.02
578
777
6.690957
TGCAAATTTTCGAGTTAAACAGTCTG
59.309
34.615
0.00
0.00
0.00
3.51
602
801
1.393539
CGGTAATGGCACGAGTTTCTG
59.606
52.381
0.00
0.00
0.00
3.02
611
810
7.360607
GGACATGTTATTATACGGTAATGGCAC
60.361
40.741
0.00
2.20
0.00
5.01
665
864
5.946942
AGTATGGCAGACATATATCCTGG
57.053
43.478
15.46
0.00
43.55
4.45
746
945
4.142773
ACCATGAATAACGTAGGTTTTGCG
60.143
41.667
6.07
0.00
41.00
4.85
884
1083
3.062763
AGACTTCAAACTGATCACTGCG
58.937
45.455
0.00
0.00
0.00
5.18
914
1113
3.317993
GCAAGAAAACTTGTAGCAAGGGA
59.682
43.478
12.66
0.00
36.74
4.20
916
1115
4.574599
AGCAAGAAAACTTGTAGCAAGG
57.425
40.909
12.66
0.00
36.74
3.61
925
1124
3.633986
CCACCAGAGAAGCAAGAAAACTT
59.366
43.478
0.00
0.00
0.00
2.66
1017
1216
3.324117
CATCTGTGTCTGAACAGGACAG
58.676
50.000
19.30
19.30
46.27
3.51
1203
1402
5.105997
GGAAACATTCAAAGCTATCTGCAGT
60.106
40.000
14.67
3.75
45.94
4.40
1361
1560
3.737172
GTTGCACGCCGCTTCCAT
61.737
61.111
0.00
0.00
43.06
3.41
1432
1631
4.256920
TCCTTAGCAAGCTGTTTCATCTC
58.743
43.478
4.53
0.00
0.00
2.75
1528
1727
5.659440
ACATGTTCACCCCAAATGTTATC
57.341
39.130
0.00
0.00
0.00
1.75
1572
1771
1.533625
TTGGAGCAAATGGTTCCTCG
58.466
50.000
0.00
0.00
46.38
4.63
1635
1834
4.500887
CCAACTCGTACAGACCTTTTGAGA
60.501
45.833
0.00
0.00
0.00
3.27
2091
2290
1.680207
GAGAAAGGGATGGATGCTTGC
59.320
52.381
0.00
0.00
0.00
4.01
2149
2348
3.848019
CGCAGCATGTCAACATCTTTTAC
59.152
43.478
0.00
0.00
39.31
2.01
2169
2368
2.517875
ATGGGAAGCTCCATGCGC
60.518
61.111
6.15
0.00
45.13
6.09
2538
2740
1.697284
TGTCATCATCCTCCTCCTCG
58.303
55.000
0.00
0.00
0.00
4.63
2775
2977
3.136750
CTGGGAGGGAGCATCTCG
58.863
66.667
0.00
0.00
43.84
4.04
2919
3121
1.422161
AAGTTCCCAGCCTCTGCAGT
61.422
55.000
14.67
0.00
41.13
4.40
3002
3224
3.014085
TAGGGCTGCTTCCGTTCCG
62.014
63.158
0.00
0.00
0.00
4.30
3003
3225
1.449778
GTAGGGCTGCTTCCGTTCC
60.450
63.158
0.00
0.00
0.00
3.62
3004
3226
1.810030
CGTAGGGCTGCTTCCGTTC
60.810
63.158
0.00
0.00
0.00
3.95
3005
3227
2.264794
CGTAGGGCTGCTTCCGTT
59.735
61.111
0.00
0.00
0.00
4.44
3006
3228
4.452733
GCGTAGGGCTGCTTCCGT
62.453
66.667
0.00
0.00
39.11
4.69
3021
3243
3.112075
CACACACCTACAGGCGCG
61.112
66.667
0.00
0.00
39.32
6.86
3069
3296
9.947433
TCTTTATTTTTATCGAACCACCTCTAA
57.053
29.630
0.00
0.00
0.00
2.10
3104
3331
1.134946
CGGGGAAGATCAAATGCCAAC
59.865
52.381
0.00
0.00
0.00
3.77
3108
3335
0.383231
CTGCGGGGAAGATCAAATGC
59.617
55.000
0.00
0.00
0.00
3.56
3112
3339
0.250234
CACTCTGCGGGGAAGATCAA
59.750
55.000
0.00
0.00
0.00
2.57
3113
3340
0.904865
ACACTCTGCGGGGAAGATCA
60.905
55.000
0.00
0.00
0.00
2.92
3124
3351
1.132588
GACACGAAGACACACTCTGC
58.867
55.000
0.00
0.00
0.00
4.26
3125
3352
2.223595
ACAGACACGAAGACACACTCTG
60.224
50.000
0.00
0.00
0.00
3.35
3127
3354
2.120232
CACAGACACGAAGACACACTC
58.880
52.381
0.00
0.00
0.00
3.51
3381
3610
1.934589
ATATACGTGCACATGCGTGT
58.065
45.000
18.64
5.51
45.50
4.49
3382
3611
5.743872
AGATATATATACGTGCACATGCGTG
59.256
40.000
18.64
3.82
46.56
5.34
3418
3647
7.038659
GCAGAGAAGTAGACACATAAACAGAT
58.961
38.462
0.00
0.00
0.00
2.90
3419
3648
6.209589
AGCAGAGAAGTAGACACATAAACAGA
59.790
38.462
0.00
0.00
0.00
3.41
3421
3650
6.346477
AGCAGAGAAGTAGACACATAAACA
57.654
37.500
0.00
0.00
0.00
2.83
3422
3651
7.360438
CCAAAGCAGAGAAGTAGACACATAAAC
60.360
40.741
0.00
0.00
0.00
2.01
3423
3652
6.650807
CCAAAGCAGAGAAGTAGACACATAAA
59.349
38.462
0.00
0.00
0.00
1.40
3424
3653
6.166279
CCAAAGCAGAGAAGTAGACACATAA
58.834
40.000
0.00
0.00
0.00
1.90
3425
3654
5.724328
CCAAAGCAGAGAAGTAGACACATA
58.276
41.667
0.00
0.00
0.00
2.29
3426
3655
4.573900
CCAAAGCAGAGAAGTAGACACAT
58.426
43.478
0.00
0.00
0.00
3.21
3427
3656
3.803715
GCCAAAGCAGAGAAGTAGACACA
60.804
47.826
0.00
0.00
39.53
3.72
3479
3708
8.206126
TGTATCACATCAACATACTATCCCAT
57.794
34.615
0.00
0.00
0.00
4.00
3490
3719
4.934602
TCATTCGCTTGTATCACATCAACA
59.065
37.500
0.00
0.00
0.00
3.33
3504
3733
2.286872
CAAGCTCCAGATCATTCGCTT
58.713
47.619
0.00
0.98
38.14
4.68
3520
3749
2.203294
ACACCACCCGAACCAAGC
60.203
61.111
0.00
0.00
0.00
4.01
3533
3763
1.606601
GGAGGGCCCTTTTGACACC
60.607
63.158
29.39
17.37
0.00
4.16
3549
3779
1.403647
CGAGTTTCTACGGCACATGGA
60.404
52.381
0.00
0.00
0.00
3.41
3655
3887
3.799420
GTCAATAGATCTGTGCTTCCGTC
59.201
47.826
5.18
0.00
0.00
4.79
3667
3899
0.321996
GAGGGCGGGGTCAATAGATC
59.678
60.000
0.00
0.00
0.00
2.75
3705
3937
0.036875
GTCCAGTCCAAACCTCCCAG
59.963
60.000
0.00
0.00
0.00
4.45
3706
3938
1.423794
GGTCCAGTCCAAACCTCCCA
61.424
60.000
0.00
0.00
0.00
4.37
3711
3943
1.074951
CCAGGGTCCAGTCCAAACC
59.925
63.158
0.00
0.00
0.00
3.27
3789
4021
2.436115
GCCACCTAACCTGACGGC
60.436
66.667
0.00
0.00
0.00
5.68
3814
4046
0.244721
TCTCACTCTGGCGTGTGATG
59.755
55.000
12.18
8.47
41.29
3.07
3815
4047
0.244994
GTCTCACTCTGGCGTGTGAT
59.755
55.000
12.18
0.00
41.29
3.06
3842
4074
0.615850
GGAAAGGGACCTCCACTGAG
59.384
60.000
0.00
0.00
38.24
3.35
3855
4087
1.004044
ACAGTCCAGATGCAGGAAAGG
59.996
52.381
0.00
0.00
36.80
3.11
3887
4119
2.031944
GGACTTCTTCGGTGCAGTTTTC
60.032
50.000
0.00
0.00
0.00
2.29
3894
4126
1.578206
GGCTTGGACTTCTTCGGTGC
61.578
60.000
0.00
0.00
0.00
5.01
3895
4127
0.955919
GGGCTTGGACTTCTTCGGTG
60.956
60.000
0.00
0.00
0.00
4.94
3898
4130
1.339055
TGATGGGCTTGGACTTCTTCG
60.339
52.381
0.00
0.00
0.00
3.79
3923
4155
7.375834
TCGCTTGAAGTTTTCTGATCTACTAA
58.624
34.615
0.00
0.00
0.00
2.24
3924
4156
6.920817
TCGCTTGAAGTTTTCTGATCTACTA
58.079
36.000
0.00
0.00
0.00
1.82
3925
4157
5.784177
TCGCTTGAAGTTTTCTGATCTACT
58.216
37.500
0.00
0.00
0.00
2.57
3926
4158
5.062809
CCTCGCTTGAAGTTTTCTGATCTAC
59.937
44.000
0.00
0.00
0.00
2.59
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.