Multiple sequence alignment - TraesCS5A01G251200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G251200 chr5A 100.000 3953 0 0 1 3953 466988467 466984515 0.000000e+00 7300
1 TraesCS5A01G251200 chr5D 94.531 3968 148 23 16 3950 365326999 365323068 0.000000e+00 6061
2 TraesCS5A01G251200 chr5B 93.390 3555 136 32 417 3950 431800606 431797130 0.000000e+00 5171
3 TraesCS5A01G251200 chr5B 96.697 333 10 1 16 348 431807171 431806840 1.610000e-153 553
4 TraesCS5A01G251200 chr5B 97.753 89 2 0 333 421 431806657 431806569 1.900000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G251200 chr5A 466984515 466988467 3952 True 7300.0 7300 100.000 1 3953 1 chr5A.!!$R1 3952
1 TraesCS5A01G251200 chr5D 365323068 365326999 3931 True 6061.0 6061 94.531 16 3950 1 chr5D.!!$R1 3934
2 TraesCS5A01G251200 chr5B 431797130 431800606 3476 True 5171.0 5171 93.390 417 3950 1 chr5B.!!$R1 3533
3 TraesCS5A01G251200 chr5B 431806569 431807171 602 True 353.5 553 97.225 16 421 2 chr5B.!!$R2 405


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 864 0.319900 TGCTTCTGCGTCCTTCTCAC 60.32 55.0 0.0 0.0 43.34 3.51 F
1432 1631 0.040204 ATGTTCAAGCCCTTCCCCTG 59.96 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1771 1.533625 TTGGAGCAAATGGTTCCTCG 58.466 50.0 0.0 0.0 46.38 4.63 R
3112 3339 0.250234 CACTCTGCGGGGAAGATCAA 59.750 55.0 0.0 0.0 0.00 2.57 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
296 297 4.062991 GTCACCATGGGACCGAAATATAC 58.937 47.826 18.09 0.00 0.00 1.47
322 323 2.041081 TCCTGTCTGGGGTTTATGGTTG 59.959 50.000 0.00 0.00 36.20 3.77
412 611 1.178534 TGCTTAACAACTGCCCTGGC 61.179 55.000 0.00 0.00 42.35 4.85
459 658 6.488006 AGAATTTTATGAAGCCATGCTATCGT 59.512 34.615 0.00 0.00 38.25 3.73
477 676 4.929819 TCGTCTATTGCTTGCTATGGTA 57.070 40.909 0.17 0.00 0.00 3.25
529 728 5.047802 TGAAATGAGCAAACAAGAAGATCCC 60.048 40.000 0.00 0.00 0.00 3.85
561 760 1.473258 TTTGTGGCAGCAACTTGAGT 58.527 45.000 0.43 0.00 0.00 3.41
569 768 3.127721 GGCAGCAACTTGAGTCTATTTCC 59.872 47.826 0.00 0.00 0.00 3.13
578 777 2.027192 TGAGTCTATTTCCTGGTGTGCC 60.027 50.000 0.00 0.00 0.00 5.01
602 801 6.142320 CCAGACTGTTTAACTCGAAAATTTGC 59.858 38.462 0.93 0.00 0.00 3.68
611 810 4.527564 ACTCGAAAATTTGCAGAAACTCG 58.472 39.130 0.00 0.00 0.00 4.18
665 864 0.319900 TGCTTCTGCGTCCTTCTCAC 60.320 55.000 0.00 0.00 43.34 3.51
884 1083 3.492102 TGGCCTACTATTGATTGCTCC 57.508 47.619 3.32 0.00 0.00 4.70
914 1113 8.401709 GTGATCAGTTTGAAGTCTTCTTTCTTT 58.598 33.333 13.67 0.68 33.64 2.52
916 1115 7.321745 TCAGTTTGAAGTCTTCTTTCTTTCC 57.678 36.000 13.67 0.00 33.64 3.13
925 1124 5.063880 GTCTTCTTTCTTTCCCTTGCTACA 58.936 41.667 0.00 0.00 0.00 2.74
1074 1273 2.612972 GGATCGGAGTTTCAGCAGTGAA 60.613 50.000 0.00 0.00 41.13 3.18
1185 1384 1.283029 CTGGAGAGGGGAGAAAATGCA 59.717 52.381 0.00 0.00 0.00 3.96
1188 1387 2.555227 GGAGAGGGGAGAAAATGCACAA 60.555 50.000 0.00 0.00 0.00 3.33
1361 1560 4.480115 TCAACACCTTGTCTCTCTCCTAA 58.520 43.478 0.00 0.00 0.00 2.69
1367 1566 4.714308 ACCTTGTCTCTCTCCTAATGGAAG 59.286 45.833 0.00 0.00 42.66 3.46
1432 1631 0.040204 ATGTTCAAGCCCTTCCCCTG 59.960 55.000 0.00 0.00 0.00 4.45
1528 1727 0.175073 GGGTGGTGCCTACTACTTCG 59.825 60.000 0.00 0.00 38.26 3.79
1572 1771 2.287909 TGCAATTGTAAAGCCAACCGAC 60.288 45.455 7.40 0.00 0.00 4.79
1635 1834 2.450502 ACCCTTGGACAGCCAGGT 60.451 61.111 0.00 0.00 46.91 4.00
1792 1991 2.756760 ACTGTTGGCTGCAATCATAAGG 59.243 45.455 0.50 0.00 0.00 2.69
1806 2005 6.690530 CAATCATAAGGTGTTCCACAACAAT 58.309 36.000 0.00 0.00 44.32 2.71
1813 2012 3.115554 GTGTTCCACAACAATTCACAGC 58.884 45.455 0.00 0.00 44.32 4.40
2028 2227 3.181475 TGCAGACCGAACTCATTCCTATC 60.181 47.826 0.00 0.00 0.00 2.08
2091 2290 1.462616 TTGAATGGATTCACTGGCCG 58.537 50.000 0.00 0.00 45.63 6.13
2149 2348 7.042950 TGAATACATTGCAAATTTGGATCCTG 58.957 34.615 19.47 15.45 0.00 3.86
2159 2358 7.099120 GCAAATTTGGATCCTGTAAAAGATGT 58.901 34.615 19.47 0.00 0.00 3.06
2163 2362 6.817765 TTGGATCCTGTAAAAGATGTTGAC 57.182 37.500 14.23 0.00 0.00 3.18
2169 2368 5.181811 TCCTGTAAAAGATGTTGACATGCTG 59.818 40.000 0.57 0.00 36.57 4.41
2172 2371 0.169672 AAGATGTTGACATGCTGCGC 59.830 50.000 0.00 0.00 36.57 6.09
2538 2740 1.071605 CAAAGCTAGCCGAGTGTGAC 58.928 55.000 12.13 0.00 0.00 3.67
2681 2883 1.279846 TGGGAAAGCTAAACCCTACCG 59.720 52.381 19.04 0.00 43.59 4.02
2999 3221 2.254350 GGTGTTTTCTTCGCGGCC 59.746 61.111 6.13 0.00 0.00 6.13
3002 3224 4.753877 GTTTTCTTCGCGGCCGCC 62.754 66.667 42.07 25.29 37.98 6.13
3021 3243 1.449778 GGAACGGAAGCAGCCCTAC 60.450 63.158 0.00 0.00 0.00 3.18
3069 3296 2.593026 GGATCGTGGAGAGGAGAAGAT 58.407 52.381 0.00 0.00 0.00 2.40
3104 3331 4.025480 CGATAAAAATAAAGACCGTCCCCG 60.025 45.833 0.00 0.00 0.00 5.73
3108 3335 0.251073 ATAAAGACCGTCCCCGTTGG 59.749 55.000 0.00 0.00 0.00 3.77
3112 3339 3.912745 GACCGTCCCCGTTGGCATT 62.913 63.158 0.00 0.00 0.00 3.56
3113 3340 2.675075 CCGTCCCCGTTGGCATTT 60.675 61.111 0.00 0.00 0.00 2.32
3123 3350 1.134946 CGTTGGCATTTGATCTTCCCC 59.865 52.381 0.00 0.00 0.00 4.81
3124 3351 1.134946 GTTGGCATTTGATCTTCCCCG 59.865 52.381 0.00 0.00 0.00 5.73
3125 3352 1.037030 TGGCATTTGATCTTCCCCGC 61.037 55.000 0.00 0.00 0.00 6.13
3127 3354 0.383231 GCATTTGATCTTCCCCGCAG 59.617 55.000 0.00 0.00 0.00 5.18
3381 3610 4.233632 TGAATATGCACCTGGATGTTGA 57.766 40.909 0.00 0.00 28.38 3.18
3382 3611 3.947196 TGAATATGCACCTGGATGTTGAC 59.053 43.478 0.00 0.00 28.38 3.18
3404 3633 5.949233 CACGCATGTGCACGTATATATAT 57.051 39.130 12.10 0.00 41.32 0.86
3405 3634 5.951698 CACGCATGTGCACGTATATATATC 58.048 41.667 12.10 0.00 41.32 1.63
3406 3635 5.743872 CACGCATGTGCACGTATATATATCT 59.256 40.000 12.10 0.00 41.32 1.98
3407 3636 6.910433 CACGCATGTGCACGTATATATATCTA 59.090 38.462 12.10 0.00 41.32 1.98
3408 3637 7.431084 CACGCATGTGCACGTATATATATCTAA 59.569 37.037 12.10 0.00 41.32 2.10
3409 3638 8.135529 ACGCATGTGCACGTATATATATCTAAT 58.864 33.333 12.10 0.00 41.48 1.73
3479 3708 2.201732 GCGTGAGTTGTTGAGAGAACA 58.798 47.619 0.00 0.00 31.80 3.18
3490 3719 7.126421 AGTTGTTGAGAGAACATGGGATAGTAT 59.874 37.037 0.00 0.00 31.80 2.12
3504 3733 7.610580 TGGGATAGTATGTTGATGTGATACA 57.389 36.000 0.00 0.00 0.00 2.29
3520 3749 4.447054 GTGATACAAGCGAATGATCTGGAG 59.553 45.833 0.00 0.00 0.00 3.86
3533 3763 1.672356 CTGGAGCTTGGTTCGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
3549 3779 1.152546 GTGGTGTCAAAAGGGCCCT 60.153 57.895 22.28 22.28 0.00 5.19
3568 3800 2.271800 CTCCATGTGCCGTAGAAACTC 58.728 52.381 0.00 0.00 0.00 3.01
3577 3809 1.349259 CGTAGAAACTCGCGGGTTGG 61.349 60.000 27.54 8.85 0.00 3.77
3578 3810 1.375013 TAGAAACTCGCGGGTTGGC 60.375 57.895 27.54 20.26 0.00 4.52
3579 3811 1.823169 TAGAAACTCGCGGGTTGGCT 61.823 55.000 27.54 25.87 0.00 4.75
3580 3812 2.668550 AAACTCGCGGGTTGGCTC 60.669 61.111 27.54 0.00 0.00 4.70
3581 3813 4.699522 AACTCGCGGGTTGGCTCC 62.700 66.667 26.19 0.00 0.00 4.70
3655 3887 2.265683 CAGATGTCGACATGTCTGGTG 58.734 52.381 34.48 14.85 36.57 4.17
3667 3899 1.367471 TCTGGTGACGGAAGCACAG 59.633 57.895 0.00 0.00 44.59 3.66
3680 3912 3.471680 GAAGCACAGATCTATTGACCCC 58.528 50.000 7.54 0.00 0.00 4.95
3682 3914 1.871080 CACAGATCTATTGACCCCGC 58.129 55.000 0.00 0.00 0.00 6.13
3706 3938 4.508128 CCCGCGACGTATGCACCT 62.508 66.667 8.23 0.00 0.00 4.00
3711 3943 1.226974 CGACGTATGCACCTGGGAG 60.227 63.158 0.00 0.00 0.00 4.30
3789 4021 2.079925 CTTCTCCGAGCCCTTCTTTTG 58.920 52.381 0.00 0.00 0.00 2.44
3839 4071 1.226802 CGCCAGAGTGAGACCATCG 60.227 63.158 0.00 0.00 0.00 3.84
3842 4074 0.457851 CCAGAGTGAGACCATCGTCC 59.542 60.000 0.00 0.00 40.12 4.79
3895 4127 5.673337 TGTGAACTACAGATGAAAACTGC 57.327 39.130 0.00 0.00 40.90 4.40
3898 4130 4.515191 TGAACTACAGATGAAAACTGCACC 59.485 41.667 0.00 0.00 40.90 5.01
3923 4155 1.204146 AGTCCAAGCCCATCACGTAT 58.796 50.000 0.00 0.00 0.00 3.06
3924 4156 1.559682 AGTCCAAGCCCATCACGTATT 59.440 47.619 0.00 0.00 0.00 1.89
3925 4157 2.769663 AGTCCAAGCCCATCACGTATTA 59.230 45.455 0.00 0.00 0.00 0.98
3926 4158 3.131396 GTCCAAGCCCATCACGTATTAG 58.869 50.000 0.00 0.00 0.00 1.73
3950 4182 3.999663 AGATCAGAAAACTTCAAGCGAGG 59.000 43.478 0.00 0.00 0.00 4.63
3951 4183 3.469008 TCAGAAAACTTCAAGCGAGGA 57.531 42.857 0.00 0.00 0.00 3.71
3952 4184 3.131396 TCAGAAAACTTCAAGCGAGGAC 58.869 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 4.989279 ACAGCTTCTCACAACAACAAAT 57.011 36.364 0.00 0.00 0.00 2.32
256 257 5.248477 TGGTGACAGTAGGCTTTAGATCTTT 59.752 40.000 0.00 0.00 35.01 2.52
257 258 4.777896 TGGTGACAGTAGGCTTTAGATCTT 59.222 41.667 0.00 0.00 35.01 2.40
296 297 5.133221 CCATAAACCCCAGACAGGAATAAG 58.867 45.833 0.00 0.00 41.22 1.73
322 323 8.273780 AGATTCCACATCTTCACTTAATCAAC 57.726 34.615 0.00 0.00 0.00 3.18
459 658 4.653801 TCCTGTACCATAGCAAGCAATAGA 59.346 41.667 0.00 0.00 0.00 1.98
491 690 8.801715 TTGCTCATTTCAGTATTTCTGTTTTC 57.198 30.769 0.00 0.00 43.97 2.29
493 692 8.196771 TGTTTGCTCATTTCAGTATTTCTGTTT 58.803 29.630 0.00 0.00 43.97 2.83
529 728 2.204237 GCCACAAAACAAAGCCTCTTG 58.796 47.619 0.00 0.00 0.00 3.02
578 777 6.690957 TGCAAATTTTCGAGTTAAACAGTCTG 59.309 34.615 0.00 0.00 0.00 3.51
602 801 1.393539 CGGTAATGGCACGAGTTTCTG 59.606 52.381 0.00 0.00 0.00 3.02
611 810 7.360607 GGACATGTTATTATACGGTAATGGCAC 60.361 40.741 0.00 2.20 0.00 5.01
665 864 5.946942 AGTATGGCAGACATATATCCTGG 57.053 43.478 15.46 0.00 43.55 4.45
746 945 4.142773 ACCATGAATAACGTAGGTTTTGCG 60.143 41.667 6.07 0.00 41.00 4.85
884 1083 3.062763 AGACTTCAAACTGATCACTGCG 58.937 45.455 0.00 0.00 0.00 5.18
914 1113 3.317993 GCAAGAAAACTTGTAGCAAGGGA 59.682 43.478 12.66 0.00 36.74 4.20
916 1115 4.574599 AGCAAGAAAACTTGTAGCAAGG 57.425 40.909 12.66 0.00 36.74 3.61
925 1124 3.633986 CCACCAGAGAAGCAAGAAAACTT 59.366 43.478 0.00 0.00 0.00 2.66
1017 1216 3.324117 CATCTGTGTCTGAACAGGACAG 58.676 50.000 19.30 19.30 46.27 3.51
1203 1402 5.105997 GGAAACATTCAAAGCTATCTGCAGT 60.106 40.000 14.67 3.75 45.94 4.40
1361 1560 3.737172 GTTGCACGCCGCTTCCAT 61.737 61.111 0.00 0.00 43.06 3.41
1432 1631 4.256920 TCCTTAGCAAGCTGTTTCATCTC 58.743 43.478 4.53 0.00 0.00 2.75
1528 1727 5.659440 ACATGTTCACCCCAAATGTTATC 57.341 39.130 0.00 0.00 0.00 1.75
1572 1771 1.533625 TTGGAGCAAATGGTTCCTCG 58.466 50.000 0.00 0.00 46.38 4.63
1635 1834 4.500887 CCAACTCGTACAGACCTTTTGAGA 60.501 45.833 0.00 0.00 0.00 3.27
2091 2290 1.680207 GAGAAAGGGATGGATGCTTGC 59.320 52.381 0.00 0.00 0.00 4.01
2149 2348 3.848019 CGCAGCATGTCAACATCTTTTAC 59.152 43.478 0.00 0.00 39.31 2.01
2169 2368 2.517875 ATGGGAAGCTCCATGCGC 60.518 61.111 6.15 0.00 45.13 6.09
2538 2740 1.697284 TGTCATCATCCTCCTCCTCG 58.303 55.000 0.00 0.00 0.00 4.63
2775 2977 3.136750 CTGGGAGGGAGCATCTCG 58.863 66.667 0.00 0.00 43.84 4.04
2919 3121 1.422161 AAGTTCCCAGCCTCTGCAGT 61.422 55.000 14.67 0.00 41.13 4.40
3002 3224 3.014085 TAGGGCTGCTTCCGTTCCG 62.014 63.158 0.00 0.00 0.00 4.30
3003 3225 1.449778 GTAGGGCTGCTTCCGTTCC 60.450 63.158 0.00 0.00 0.00 3.62
3004 3226 1.810030 CGTAGGGCTGCTTCCGTTC 60.810 63.158 0.00 0.00 0.00 3.95
3005 3227 2.264794 CGTAGGGCTGCTTCCGTT 59.735 61.111 0.00 0.00 0.00 4.44
3006 3228 4.452733 GCGTAGGGCTGCTTCCGT 62.453 66.667 0.00 0.00 39.11 4.69
3021 3243 3.112075 CACACACCTACAGGCGCG 61.112 66.667 0.00 0.00 39.32 6.86
3069 3296 9.947433 TCTTTATTTTTATCGAACCACCTCTAA 57.053 29.630 0.00 0.00 0.00 2.10
3104 3331 1.134946 CGGGGAAGATCAAATGCCAAC 59.865 52.381 0.00 0.00 0.00 3.77
3108 3335 0.383231 CTGCGGGGAAGATCAAATGC 59.617 55.000 0.00 0.00 0.00 3.56
3112 3339 0.250234 CACTCTGCGGGGAAGATCAA 59.750 55.000 0.00 0.00 0.00 2.57
3113 3340 0.904865 ACACTCTGCGGGGAAGATCA 60.905 55.000 0.00 0.00 0.00 2.92
3124 3351 1.132588 GACACGAAGACACACTCTGC 58.867 55.000 0.00 0.00 0.00 4.26
3125 3352 2.223595 ACAGACACGAAGACACACTCTG 60.224 50.000 0.00 0.00 0.00 3.35
3127 3354 2.120232 CACAGACACGAAGACACACTC 58.880 52.381 0.00 0.00 0.00 3.51
3381 3610 1.934589 ATATACGTGCACATGCGTGT 58.065 45.000 18.64 5.51 45.50 4.49
3382 3611 5.743872 AGATATATATACGTGCACATGCGTG 59.256 40.000 18.64 3.82 46.56 5.34
3418 3647 7.038659 GCAGAGAAGTAGACACATAAACAGAT 58.961 38.462 0.00 0.00 0.00 2.90
3419 3648 6.209589 AGCAGAGAAGTAGACACATAAACAGA 59.790 38.462 0.00 0.00 0.00 3.41
3421 3650 6.346477 AGCAGAGAAGTAGACACATAAACA 57.654 37.500 0.00 0.00 0.00 2.83
3422 3651 7.360438 CCAAAGCAGAGAAGTAGACACATAAAC 60.360 40.741 0.00 0.00 0.00 2.01
3423 3652 6.650807 CCAAAGCAGAGAAGTAGACACATAAA 59.349 38.462 0.00 0.00 0.00 1.40
3424 3653 6.166279 CCAAAGCAGAGAAGTAGACACATAA 58.834 40.000 0.00 0.00 0.00 1.90
3425 3654 5.724328 CCAAAGCAGAGAAGTAGACACATA 58.276 41.667 0.00 0.00 0.00 2.29
3426 3655 4.573900 CCAAAGCAGAGAAGTAGACACAT 58.426 43.478 0.00 0.00 0.00 3.21
3427 3656 3.803715 GCCAAAGCAGAGAAGTAGACACA 60.804 47.826 0.00 0.00 39.53 3.72
3479 3708 8.206126 TGTATCACATCAACATACTATCCCAT 57.794 34.615 0.00 0.00 0.00 4.00
3490 3719 4.934602 TCATTCGCTTGTATCACATCAACA 59.065 37.500 0.00 0.00 0.00 3.33
3504 3733 2.286872 CAAGCTCCAGATCATTCGCTT 58.713 47.619 0.00 0.98 38.14 4.68
3520 3749 2.203294 ACACCACCCGAACCAAGC 60.203 61.111 0.00 0.00 0.00 4.01
3533 3763 1.606601 GGAGGGCCCTTTTGACACC 60.607 63.158 29.39 17.37 0.00 4.16
3549 3779 1.403647 CGAGTTTCTACGGCACATGGA 60.404 52.381 0.00 0.00 0.00 3.41
3655 3887 3.799420 GTCAATAGATCTGTGCTTCCGTC 59.201 47.826 5.18 0.00 0.00 4.79
3667 3899 0.321996 GAGGGCGGGGTCAATAGATC 59.678 60.000 0.00 0.00 0.00 2.75
3705 3937 0.036875 GTCCAGTCCAAACCTCCCAG 59.963 60.000 0.00 0.00 0.00 4.45
3706 3938 1.423794 GGTCCAGTCCAAACCTCCCA 61.424 60.000 0.00 0.00 0.00 4.37
3711 3943 1.074951 CCAGGGTCCAGTCCAAACC 59.925 63.158 0.00 0.00 0.00 3.27
3789 4021 2.436115 GCCACCTAACCTGACGGC 60.436 66.667 0.00 0.00 0.00 5.68
3814 4046 0.244721 TCTCACTCTGGCGTGTGATG 59.755 55.000 12.18 8.47 41.29 3.07
3815 4047 0.244994 GTCTCACTCTGGCGTGTGAT 59.755 55.000 12.18 0.00 41.29 3.06
3842 4074 0.615850 GGAAAGGGACCTCCACTGAG 59.384 60.000 0.00 0.00 38.24 3.35
3855 4087 1.004044 ACAGTCCAGATGCAGGAAAGG 59.996 52.381 0.00 0.00 36.80 3.11
3887 4119 2.031944 GGACTTCTTCGGTGCAGTTTTC 60.032 50.000 0.00 0.00 0.00 2.29
3894 4126 1.578206 GGCTTGGACTTCTTCGGTGC 61.578 60.000 0.00 0.00 0.00 5.01
3895 4127 0.955919 GGGCTTGGACTTCTTCGGTG 60.956 60.000 0.00 0.00 0.00 4.94
3898 4130 1.339055 TGATGGGCTTGGACTTCTTCG 60.339 52.381 0.00 0.00 0.00 3.79
3923 4155 7.375834 TCGCTTGAAGTTTTCTGATCTACTAA 58.624 34.615 0.00 0.00 0.00 2.24
3924 4156 6.920817 TCGCTTGAAGTTTTCTGATCTACTA 58.079 36.000 0.00 0.00 0.00 1.82
3925 4157 5.784177 TCGCTTGAAGTTTTCTGATCTACT 58.216 37.500 0.00 0.00 0.00 2.57
3926 4158 5.062809 CCTCGCTTGAAGTTTTCTGATCTAC 59.937 44.000 0.00 0.00 0.00 2.59



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.