Multiple sequence alignment - TraesCS5A01G250600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G250600 chr5A 100.000 4437 0 0 1 4437 466025209 466029645 0.000000e+00 8194
1 TraesCS5A01G250600 chr5D 91.431 3326 138 73 590 3858 364744286 364747521 0.000000e+00 4427
2 TraesCS5A01G250600 chr5D 93.570 591 16 7 5 592 364743660 364744231 0.000000e+00 861
3 TraesCS5A01G250600 chr5D 77.961 304 34 14 4156 4437 364747750 364748042 4.590000e-35 159
4 TraesCS5A01G250600 chr5D 92.593 81 6 0 1665 1745 394160599 394160679 2.800000e-22 117
5 TraesCS5A01G250600 chr5D 88.172 93 11 0 1665 1757 387715459 387715367 1.300000e-20 111
6 TraesCS5A01G250600 chr5D 89.773 88 6 1 2307 2391 364746041 364746128 4.690000e-20 110
7 TraesCS5A01G250600 chr5B 92.866 2425 87 44 5 2405 430739483 430741845 0.000000e+00 3441
8 TraesCS5A01G250600 chr5B 89.290 1578 69 32 2351 3874 430741735 430743266 0.000000e+00 1886
9 TraesCS5A01G250600 chr2A 80.702 171 20 4 1587 1757 768206848 768206691 2.170000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G250600 chr5A 466025209 466029645 4436 False 8194.00 8194 100.00000 1 4437 1 chr5A.!!$F1 4436
1 TraesCS5A01G250600 chr5D 364743660 364748042 4382 False 1389.25 4427 88.18375 5 4437 4 chr5D.!!$F2 4432
2 TraesCS5A01G250600 chr5B 430739483 430743266 3783 False 2663.50 3441 91.07800 5 3874 2 chr5B.!!$F1 3869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 767 0.538287 AAGCCTTTGCCTCCACACTC 60.538 55.0 0.00 0.00 38.69 3.51 F
1401 1468 0.837940 GGGAGGGGTACTTGGATCAC 59.162 60.0 0.00 0.00 0.00 3.06 F
2668 2797 0.101040 CTAACCATGCATGCCCAACG 59.899 55.0 21.69 8.92 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2668 2797 0.668535 GCTGTTGTTGACAAGGGACC 59.331 55.0 0.00 0.0 37.93 4.46 R
3000 3151 0.823356 TTTGGGAGCTGTTGACTGCC 60.823 55.0 9.04 0.0 45.29 4.85 R
4113 4340 0.023354 GATCAACGAACACGCTACGC 59.977 55.0 0.00 0.0 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 5.371115 GAAGTGAAATGAAATGGGACGAA 57.629 39.130 0.00 0.00 0.00 3.85
101 103 3.309121 CCCTCCTAATGTTGACCACCAAT 60.309 47.826 0.00 0.00 37.08 3.16
167 169 3.440872 TGTAAATAATTGCCCGTGTCCAC 59.559 43.478 0.00 0.00 0.00 4.02
313 315 1.815840 GCCTCTTTACGCCTGCTCC 60.816 63.158 0.00 0.00 0.00 4.70
314 316 1.901085 CCTCTTTACGCCTGCTCCT 59.099 57.895 0.00 0.00 0.00 3.69
384 386 1.084289 GCAAGTAAGTAACCCAGGCG 58.916 55.000 0.00 0.00 0.00 5.52
400 402 2.202570 CGGAGCGGGTCGTAACTG 60.203 66.667 0.53 0.00 0.00 3.16
496 500 5.405269 GTGCCCTAACACATTTTAAAGCTTG 59.595 40.000 0.00 0.00 40.40 4.01
550 554 0.840617 TGGTGCCCAGTTTGTGACTA 59.159 50.000 0.00 0.00 36.65 2.59
551 555 1.202758 TGGTGCCCAGTTTGTGACTAG 60.203 52.381 0.00 0.00 36.65 2.57
552 556 1.523758 GTGCCCAGTTTGTGACTAGG 58.476 55.000 0.00 0.00 39.83 3.02
553 557 1.071699 GTGCCCAGTTTGTGACTAGGA 59.928 52.381 0.00 0.00 39.26 2.94
554 558 1.347707 TGCCCAGTTTGTGACTAGGAG 59.652 52.381 0.00 0.00 39.26 3.69
555 559 1.348036 GCCCAGTTTGTGACTAGGAGT 59.652 52.381 0.00 0.00 39.26 3.85
556 560 2.565834 GCCCAGTTTGTGACTAGGAGTA 59.434 50.000 0.00 0.00 39.26 2.59
557 561 3.368531 GCCCAGTTTGTGACTAGGAGTAG 60.369 52.174 0.00 0.00 39.26 2.57
558 562 3.195825 CCCAGTTTGTGACTAGGAGTAGG 59.804 52.174 0.00 0.00 39.26 3.18
621 682 3.131400 CACAGAAACTAGTAGGGCCTCTC 59.869 52.174 10.74 4.69 0.00 3.20
703 767 0.538287 AAGCCTTTGCCTCCACACTC 60.538 55.000 0.00 0.00 38.69 3.51
704 768 1.073897 GCCTTTGCCTCCACACTCT 59.926 57.895 0.00 0.00 0.00 3.24
920 984 0.882474 CACTTCGTCTTCCCTCTCGT 59.118 55.000 0.00 0.00 0.00 4.18
1131 1198 3.807538 GCGCACCATCACCAGCAG 61.808 66.667 0.30 0.00 0.00 4.24
1133 1200 2.674033 GCACCATCACCAGCAGCA 60.674 61.111 0.00 0.00 0.00 4.41
1134 1201 2.050350 GCACCATCACCAGCAGCAT 61.050 57.895 0.00 0.00 0.00 3.79
1135 1202 2.001361 GCACCATCACCAGCAGCATC 62.001 60.000 0.00 0.00 0.00 3.91
1136 1203 1.077212 ACCATCACCAGCAGCATCC 60.077 57.895 0.00 0.00 0.00 3.51
1137 1204 1.226542 CCATCACCAGCAGCATCCT 59.773 57.895 0.00 0.00 0.00 3.24
1140 1207 0.844660 ATCACCAGCAGCATCCTCAT 59.155 50.000 0.00 0.00 0.00 2.90
1278 1345 4.207281 TCGGGCTTCATCGAGCGG 62.207 66.667 0.00 0.00 43.62 5.52
1305 1372 2.845861 GATCGTCGTGCTTCGTCGGT 62.846 60.000 16.55 12.15 46.85 4.69
1308 1375 2.981909 TCGTGCTTCGTCGGTCCT 60.982 61.111 0.00 0.00 40.80 3.85
1312 1379 4.070552 GCTTCGTCGGTCCTGGCT 62.071 66.667 0.00 0.00 0.00 4.75
1401 1468 0.837940 GGGAGGGGTACTTGGATCAC 59.162 60.000 0.00 0.00 0.00 3.06
1503 1570 1.376037 CTGCTCGTCCAAAGGGTCC 60.376 63.158 0.00 0.00 34.93 4.46
1548 1615 2.558795 CAGCGAGGTATATACTGCCTGT 59.441 50.000 12.54 0.00 40.55 4.00
1606 1691 0.868406 CAGGTGTTCAAGAACGAGCC 59.132 55.000 8.28 9.74 43.94 4.70
1632 1720 1.971149 TCATTCAGGTGATGGGAGGT 58.029 50.000 0.00 0.00 0.00 3.85
1836 1924 1.529244 AACCAACAGCCACAGCCTC 60.529 57.895 0.00 0.00 41.25 4.70
1914 2002 5.073762 GCAGTATGTATGCATTTGAGCACG 61.074 45.833 3.54 0.00 43.34 5.34
2045 2133 4.261322 GGTACTTCCTTTTTCCACCGAAAC 60.261 45.833 0.00 0.00 37.72 2.78
2084 2172 5.826208 TGATCAGTCCTAGTATTTCGTAGCA 59.174 40.000 0.00 0.00 0.00 3.49
2188 2276 1.876156 CAGTCCCTGCAAAGACAAGTC 59.124 52.381 15.91 0.00 35.38 3.01
2269 2365 9.167311 AGTAGGATTTTAGCTTTGAACATACTG 57.833 33.333 0.00 0.00 0.00 2.74
2298 2394 2.552743 GGTGCAAGGGAAGAAGTACAAC 59.447 50.000 0.00 0.00 0.00 3.32
2305 2433 2.552373 GGGAAGAAGTACAACCACTGGG 60.552 54.545 0.00 0.00 41.29 4.45
2346 2474 5.914898 TTGCTCTAGTAACTAGCATGTCA 57.085 39.130 4.10 0.00 45.09 3.58
2347 2475 5.506686 TGCTCTAGTAACTAGCATGTCAG 57.493 43.478 0.00 0.00 41.15 3.51
2348 2476 4.950475 TGCTCTAGTAACTAGCATGTCAGT 59.050 41.667 0.00 0.00 41.15 3.41
2349 2477 5.163612 TGCTCTAGTAACTAGCATGTCAGTG 60.164 44.000 0.00 0.00 41.15 3.66
2350 2478 5.066634 GCTCTAGTAACTAGCATGTCAGTGA 59.933 44.000 0.00 0.00 34.36 3.41
2351 2479 6.238897 GCTCTAGTAACTAGCATGTCAGTGAT 60.239 42.308 0.00 0.00 34.36 3.06
2352 2480 7.265647 TCTAGTAACTAGCATGTCAGTGATC 57.734 40.000 0.00 0.00 34.36 2.92
2353 2481 5.921962 AGTAACTAGCATGTCAGTGATCA 57.078 39.130 0.00 0.00 0.00 2.92
2354 2482 5.655488 AGTAACTAGCATGTCAGTGATCAC 58.345 41.667 18.47 18.47 0.00 3.06
2355 2483 4.815533 AACTAGCATGTCAGTGATCACT 57.184 40.909 22.89 22.89 43.61 3.41
2379 2507 6.931838 TGGGTACAGATAACTGAGTACTTTG 58.068 40.000 7.05 0.00 46.03 2.77
2380 2508 5.811100 GGGTACAGATAACTGAGTACTTTGC 59.189 44.000 7.05 0.00 46.03 3.68
2381 2509 6.351117 GGGTACAGATAACTGAGTACTTTGCT 60.351 42.308 7.05 0.00 46.03 3.91
2382 2510 6.752815 GGTACAGATAACTGAGTACTTTGCTC 59.247 42.308 7.05 0.00 46.03 4.26
2383 2511 6.597832 ACAGATAACTGAGTACTTTGCTCT 57.402 37.500 7.05 0.00 46.03 4.09
2384 2512 7.704578 ACAGATAACTGAGTACTTTGCTCTA 57.295 36.000 7.05 0.00 46.03 2.43
2385 2513 7.767261 ACAGATAACTGAGTACTTTGCTCTAG 58.233 38.462 7.05 0.00 46.03 2.43
2386 2514 7.394923 ACAGATAACTGAGTACTTTGCTCTAGT 59.605 37.037 7.05 0.00 46.03 2.57
2387 2515 8.894731 CAGATAACTGAGTACTTTGCTCTAGTA 58.105 37.037 0.00 0.00 46.03 1.82
2388 2516 9.463902 AGATAACTGAGTACTTTGCTCTAGTAA 57.536 33.333 0.00 0.00 34.30 2.24
2389 2517 9.505995 GATAACTGAGTACTTTGCTCTAGTAAC 57.494 37.037 0.00 0.00 34.30 2.50
2390 2518 7.527568 AACTGAGTACTTTGCTCTAGTAACT 57.472 36.000 0.00 0.00 34.30 2.24
2391 2519 8.632906 AACTGAGTACTTTGCTCTAGTAACTA 57.367 34.615 0.00 0.00 34.30 2.24
2392 2520 8.271312 ACTGAGTACTTTGCTCTAGTAACTAG 57.729 38.462 0.00 0.00 35.57 2.57
2393 2521 7.086230 TGAGTACTTTGCTCTAGTAACTAGC 57.914 40.000 0.00 0.00 34.36 3.42
2394 2522 6.657966 TGAGTACTTTGCTCTAGTAACTAGCA 59.342 38.462 0.00 0.00 44.15 3.49
2395 2523 7.339721 TGAGTACTTTGCTCTAGTAACTAGCAT 59.660 37.037 0.00 0.00 45.09 3.79
2396 2524 8.068892 AGTACTTTGCTCTAGTAACTAGCATT 57.931 34.615 4.10 0.00 45.09 3.56
2397 2525 8.532819 AGTACTTTGCTCTAGTAACTAGCATTT 58.467 33.333 4.10 0.00 45.09 2.32
2398 2526 7.835634 ACTTTGCTCTAGTAACTAGCATTTC 57.164 36.000 4.10 0.00 45.09 2.17
2407 2535 8.409371 TCTAGTAACTAGCATTTCAGTGATCAG 58.591 37.037 0.00 0.00 34.36 2.90
2449 2577 5.048224 TCAGTAGTGTGTTCTAGTAACTGGC 60.048 44.000 0.00 0.00 0.00 4.85
2489 2618 1.134521 ACCGCAGAGTTTTGACACTCA 60.135 47.619 3.78 0.00 45.08 3.41
2503 2632 2.485814 GACACTCACTCCCTTTGCAATC 59.514 50.000 0.00 0.00 0.00 2.67
2604 2733 9.689976 GATGTAAGAGCATCATCGCTTATATAT 57.310 33.333 0.00 0.00 44.01 0.86
2605 2734 8.862550 TGTAAGAGCATCATCGCTTATATATG 57.137 34.615 0.00 0.00 44.01 1.78
2607 2736 9.521503 GTAAGAGCATCATCGCTTATATATGAA 57.478 33.333 0.00 0.00 44.01 2.57
2609 2738 9.610705 AAGAGCATCATCGCTTATATATGAATT 57.389 29.630 0.00 0.00 44.01 2.17
2611 2740 8.375608 AGCATCATCGCTTATATATGAATTCC 57.624 34.615 2.27 0.00 39.99 3.01
2612 2741 7.443575 AGCATCATCGCTTATATATGAATTCCC 59.556 37.037 2.27 0.00 39.99 3.97
2616 2745 6.867519 TCGCTTATATATGAATTCCCTCCA 57.132 37.500 2.27 0.00 0.00 3.86
2617 2746 6.640518 TCGCTTATATATGAATTCCCTCCAC 58.359 40.000 2.27 0.00 0.00 4.02
2618 2747 6.212589 TCGCTTATATATGAATTCCCTCCACA 59.787 38.462 2.27 0.00 0.00 4.17
2667 2796 1.185315 ACTAACCATGCATGCCCAAC 58.815 50.000 21.69 0.00 0.00 3.77
2668 2797 0.101040 CTAACCATGCATGCCCAACG 59.899 55.000 21.69 8.92 0.00 4.10
2669 2798 1.318886 TAACCATGCATGCCCAACGG 61.319 55.000 21.69 8.30 0.00 4.44
2710 2842 4.410400 CGCTTCCCTGGGGTGTCC 62.410 72.222 14.00 0.00 36.47 4.02
2713 2845 2.204090 TTCCCTGGGGTGTCCTCC 60.204 66.667 14.00 0.00 36.20 4.30
2887 3033 1.986378 CAGGTTAGCGTCTCTTCAACG 59.014 52.381 0.00 0.00 42.87 4.10
2900 3046 6.457122 CGTCTCTTCAACGACTGACATATACT 60.457 42.308 0.00 0.00 42.62 2.12
2901 3047 6.689241 GTCTCTTCAACGACTGACATATACTG 59.311 42.308 0.00 0.00 32.21 2.74
2902 3048 5.891451 TCTTCAACGACTGACATATACTGG 58.109 41.667 0.00 0.00 32.21 4.00
2903 3049 5.417894 TCTTCAACGACTGACATATACTGGT 59.582 40.000 0.00 0.00 32.21 4.00
2904 3050 6.600427 TCTTCAACGACTGACATATACTGGTA 59.400 38.462 0.00 0.00 32.21 3.25
2907 3053 7.868775 TCAACGACTGACATATACTGGTATAC 58.131 38.462 3.00 0.00 31.52 1.47
2989 3138 5.700183 ACAATTTAATTTGCCCCCAAAACT 58.300 33.333 9.46 0.00 43.58 2.66
3000 3151 3.493873 GCCCCCAAAACTATAGTACCTCG 60.494 52.174 5.65 0.00 0.00 4.63
3027 3178 1.067295 ACAGCTCCCAAAGATCCACA 58.933 50.000 0.00 0.00 0.00 4.17
3028 3179 1.004044 ACAGCTCCCAAAGATCCACAG 59.996 52.381 0.00 0.00 0.00 3.66
3071 3222 3.223435 CCATAGTGTGACCGAGACCTAT 58.777 50.000 0.00 0.00 0.00 2.57
3112 3267 4.904241 AGCAGCCTATTAGATCCATTCAC 58.096 43.478 0.00 0.00 0.00 3.18
3113 3268 4.006319 GCAGCCTATTAGATCCATTCACC 58.994 47.826 0.00 0.00 0.00 4.02
3114 3269 4.263243 GCAGCCTATTAGATCCATTCACCT 60.263 45.833 0.00 0.00 0.00 4.00
3115 3270 5.243981 CAGCCTATTAGATCCATTCACCTG 58.756 45.833 0.00 0.00 0.00 4.00
3116 3271 4.288105 AGCCTATTAGATCCATTCACCTGG 59.712 45.833 0.00 0.00 37.66 4.45
3201 3356 3.788766 CTAACGTGTGCGGCAGCC 61.789 66.667 1.18 0.00 44.33 4.85
3240 3395 8.213518 ACATGTGGATGATGAATTACTAACAC 57.786 34.615 0.00 0.00 33.36 3.32
3247 3402 8.116753 GGATGATGAATTACTAACACGTTGAAG 58.883 37.037 0.00 0.00 0.00 3.02
3251 3406 8.718102 ATGAATTACTAACACGTTGAAGCTAT 57.282 30.769 0.00 0.00 0.00 2.97
3301 3456 4.033472 CCGTTTGGTTTTGTTGTTTGGATC 59.967 41.667 0.00 0.00 0.00 3.36
3443 3598 3.709987 GCCTACCAAATGTGATTGATGC 58.290 45.455 0.00 0.00 31.84 3.91
3444 3599 3.491447 GCCTACCAAATGTGATTGATGCC 60.491 47.826 0.00 0.00 31.84 4.40
3446 3601 4.342951 CCTACCAAATGTGATTGATGCCAT 59.657 41.667 0.00 0.00 31.84 4.40
3447 3602 4.395959 ACCAAATGTGATTGATGCCATC 57.604 40.909 0.00 0.00 31.84 3.51
3448 3603 3.181484 ACCAAATGTGATTGATGCCATCG 60.181 43.478 0.00 0.00 31.84 3.84
3449 3604 2.787601 AATGTGATTGATGCCATCGC 57.212 45.000 0.00 0.00 0.00 4.58
3451 3606 0.394080 TGTGATTGATGCCATCGCCA 60.394 50.000 0.00 0.00 0.00 5.69
3452 3607 0.309922 GTGATTGATGCCATCGCCAG 59.690 55.000 0.00 0.00 0.00 4.85
3453 3608 1.285023 GATTGATGCCATCGCCAGC 59.715 57.895 0.00 0.00 0.00 4.85
3454 3609 2.138656 GATTGATGCCATCGCCAGCC 62.139 60.000 0.00 0.00 0.00 4.85
3455 3610 2.914756 ATTGATGCCATCGCCAGCCA 62.915 55.000 0.00 0.00 0.00 4.75
3456 3611 3.285215 GATGCCATCGCCAGCCAG 61.285 66.667 0.00 0.00 0.00 4.85
3597 3769 2.282040 ACCACTGAAGCTGCTGCC 60.282 61.111 12.44 0.00 40.80 4.85
3733 3926 0.471022 TGGAACTGGAAAAAGGGGGC 60.471 55.000 0.00 0.00 0.00 5.80
3813 4006 2.749076 TCTGTCTGCATTTATGTGTGGC 59.251 45.455 0.00 0.00 0.00 5.01
3840 4033 2.045634 GGTGGCAGCAGCTGATGA 60.046 61.111 34.79 12.98 41.70 2.92
3841 4034 1.676635 GGTGGCAGCAGCTGATGAA 60.677 57.895 34.79 19.10 41.70 2.57
3842 4035 1.035932 GGTGGCAGCAGCTGATGAAT 61.036 55.000 34.79 3.00 41.70 2.57
3868 4085 0.033090 TGCTGCTGCAGGATATCTCG 59.967 55.000 29.05 0.08 45.31 4.04
3874 4091 2.230992 GCTGCAGGATATCTCGTCTCAT 59.769 50.000 17.12 0.00 0.00 2.90
3876 4093 3.490348 TGCAGGATATCTCGTCTCATGA 58.510 45.455 2.05 0.00 0.00 3.07
3877 4094 4.085009 TGCAGGATATCTCGTCTCATGAT 58.915 43.478 2.05 0.00 0.00 2.45
3878 4095 4.082354 TGCAGGATATCTCGTCTCATGATG 60.082 45.833 2.05 0.00 0.00 3.07
3879 4096 4.422840 CAGGATATCTCGTCTCATGATGC 58.577 47.826 2.05 0.00 0.00 3.91
3880 4097 4.082354 CAGGATATCTCGTCTCATGATGCA 60.082 45.833 2.05 0.00 0.00 3.96
3882 4099 5.187381 AGGATATCTCGTCTCATGATGCAAT 59.813 40.000 2.05 0.00 0.00 3.56
3885 4102 0.932399 TCGTCTCATGATGCAATGCG 59.068 50.000 0.00 0.00 0.00 4.73
3886 4103 0.041576 CGTCTCATGATGCAATGCGG 60.042 55.000 0.00 0.00 0.00 5.69
3887 4104 0.309922 GTCTCATGATGCAATGCGGG 59.690 55.000 0.00 0.00 0.00 6.13
3888 4105 0.820482 TCTCATGATGCAATGCGGGG 60.820 55.000 0.00 0.00 0.00 5.73
3889 4106 1.802337 CTCATGATGCAATGCGGGGG 61.802 60.000 0.00 0.00 0.00 5.40
3904 4121 3.045518 GGGGGTTTGTGTTGGGTAG 57.954 57.895 0.00 0.00 0.00 3.18
3905 4122 0.479378 GGGGGTTTGTGTTGGGTAGA 59.521 55.000 0.00 0.00 0.00 2.59
3906 4123 1.133419 GGGGGTTTGTGTTGGGTAGAA 60.133 52.381 0.00 0.00 0.00 2.10
3907 4124 2.492010 GGGGGTTTGTGTTGGGTAGAAT 60.492 50.000 0.00 0.00 0.00 2.40
3909 4126 3.644265 GGGGTTTGTGTTGGGTAGAATTT 59.356 43.478 0.00 0.00 0.00 1.82
3911 4128 4.100344 GGGTTTGTGTTGGGTAGAATTTGT 59.900 41.667 0.00 0.00 0.00 2.83
3912 4129 5.395879 GGGTTTGTGTTGGGTAGAATTTGTT 60.396 40.000 0.00 0.00 0.00 2.83
3913 4130 5.751509 GGTTTGTGTTGGGTAGAATTTGTTC 59.248 40.000 0.00 0.00 0.00 3.18
3914 4131 5.523438 TTGTGTTGGGTAGAATTTGTTCC 57.477 39.130 0.00 0.00 0.00 3.62
3915 4132 3.566322 TGTGTTGGGTAGAATTTGTTCCG 59.434 43.478 0.00 0.00 0.00 4.30
3916 4133 3.566742 GTGTTGGGTAGAATTTGTTCCGT 59.433 43.478 0.00 0.00 0.00 4.69
3917 4134 3.566322 TGTTGGGTAGAATTTGTTCCGTG 59.434 43.478 0.00 0.00 0.00 4.94
3918 4135 3.495434 TGGGTAGAATTTGTTCCGTGT 57.505 42.857 0.00 0.00 0.00 4.49
3919 4136 3.142951 TGGGTAGAATTTGTTCCGTGTG 58.857 45.455 0.00 0.00 0.00 3.82
3920 4137 3.181453 TGGGTAGAATTTGTTCCGTGTGA 60.181 43.478 0.00 0.00 0.00 3.58
3921 4138 3.187842 GGGTAGAATTTGTTCCGTGTGAC 59.812 47.826 0.00 0.00 0.00 3.67
3922 4139 4.062991 GGTAGAATTTGTTCCGTGTGACT 58.937 43.478 0.00 0.00 0.00 3.41
3923 4140 4.514066 GGTAGAATTTGTTCCGTGTGACTT 59.486 41.667 0.00 0.00 0.00 3.01
3924 4141 4.552166 AGAATTTGTTCCGTGTGACTTG 57.448 40.909 0.00 0.00 0.00 3.16
3925 4142 3.945285 AGAATTTGTTCCGTGTGACTTGT 59.055 39.130 0.00 0.00 0.00 3.16
3926 4143 3.691049 ATTTGTTCCGTGTGACTTGTG 57.309 42.857 0.00 0.00 0.00 3.33
3927 4144 2.102070 TTGTTCCGTGTGACTTGTGT 57.898 45.000 0.00 0.00 0.00 3.72
3928 4145 2.102070 TGTTCCGTGTGACTTGTGTT 57.898 45.000 0.00 0.00 0.00 3.32
3929 4146 1.735018 TGTTCCGTGTGACTTGTGTTG 59.265 47.619 0.00 0.00 0.00 3.33
3930 4147 0.730265 TTCCGTGTGACTTGTGTTGC 59.270 50.000 0.00 0.00 0.00 4.17
3931 4148 0.107897 TCCGTGTGACTTGTGTTGCT 60.108 50.000 0.00 0.00 0.00 3.91
3932 4149 0.304705 CCGTGTGACTTGTGTTGCTC 59.695 55.000 0.00 0.00 0.00 4.26
3933 4150 0.304705 CGTGTGACTTGTGTTGCTCC 59.695 55.000 0.00 0.00 0.00 4.70
3934 4151 0.304705 GTGTGACTTGTGTTGCTCCG 59.695 55.000 0.00 0.00 0.00 4.63
3935 4152 0.107897 TGTGACTTGTGTTGCTCCGT 60.108 50.000 0.00 0.00 0.00 4.69
3936 4153 1.014352 GTGACTTGTGTTGCTCCGTT 58.986 50.000 0.00 0.00 0.00 4.44
3937 4154 1.400494 GTGACTTGTGTTGCTCCGTTT 59.600 47.619 0.00 0.00 0.00 3.60
3938 4155 1.668751 TGACTTGTGTTGCTCCGTTTC 59.331 47.619 0.00 0.00 0.00 2.78
3939 4156 0.655733 ACTTGTGTTGCTCCGTTTCG 59.344 50.000 0.00 0.00 0.00 3.46
3940 4157 0.934496 CTTGTGTTGCTCCGTTTCGA 59.066 50.000 0.00 0.00 0.00 3.71
3941 4158 1.531149 CTTGTGTTGCTCCGTTTCGAT 59.469 47.619 0.00 0.00 0.00 3.59
3942 4159 0.865111 TGTGTTGCTCCGTTTCGATG 59.135 50.000 0.00 0.00 0.00 3.84
3943 4160 0.452784 GTGTTGCTCCGTTTCGATGC 60.453 55.000 0.00 0.00 0.00 3.91
3944 4161 0.602638 TGTTGCTCCGTTTCGATGCT 60.603 50.000 0.00 0.00 0.00 3.79
3945 4162 0.095417 GTTGCTCCGTTTCGATGCTC 59.905 55.000 0.00 0.00 0.00 4.26
3946 4163 0.320334 TTGCTCCGTTTCGATGCTCA 60.320 50.000 0.00 0.00 0.00 4.26
3947 4164 0.737367 TGCTCCGTTTCGATGCTCAG 60.737 55.000 0.00 0.00 0.00 3.35
3948 4165 1.424493 GCTCCGTTTCGATGCTCAGG 61.424 60.000 0.00 0.00 0.00 3.86
3949 4166 0.173481 CTCCGTTTCGATGCTCAGGA 59.827 55.000 0.00 0.00 0.00 3.86
3950 4167 0.824109 TCCGTTTCGATGCTCAGGAT 59.176 50.000 0.00 0.00 0.00 3.24
3951 4168 1.202417 TCCGTTTCGATGCTCAGGATC 60.202 52.381 0.00 0.00 0.00 3.36
3952 4169 1.471501 CCGTTTCGATGCTCAGGATCA 60.472 52.381 7.00 0.00 0.00 2.92
3953 4170 1.857217 CGTTTCGATGCTCAGGATCAG 59.143 52.381 7.00 0.00 0.00 2.90
3954 4171 2.736719 CGTTTCGATGCTCAGGATCAGT 60.737 50.000 7.00 0.00 0.00 3.41
3955 4172 2.863137 GTTTCGATGCTCAGGATCAGTC 59.137 50.000 7.00 0.00 0.00 3.51
3956 4173 1.035923 TCGATGCTCAGGATCAGTCC 58.964 55.000 7.00 0.00 45.45 3.85
3968 4185 2.436173 GGATCAGTCCTAGAACTTGGGG 59.564 54.545 0.00 0.00 41.60 4.96
3987 4204 2.330041 GCGGGTGGTGTTCAAACG 59.670 61.111 0.00 0.00 0.00 3.60
3989 4206 1.995646 GCGGGTGGTGTTCAAACGTT 61.996 55.000 0.00 0.00 31.93 3.99
3991 4208 0.101579 GGGTGGTGTTCAAACGTTGG 59.898 55.000 0.00 0.00 0.00 3.77
4003 4220 3.961729 CGTTGGACGGAAACCTCC 58.038 61.111 0.00 0.00 38.08 4.30
4005 4222 1.226030 CGTTGGACGGAAACCTCCAC 61.226 60.000 0.00 0.00 42.58 4.02
4008 4225 1.003718 GGACGGAAACCTCCACCTG 60.004 63.158 0.00 0.00 42.58 4.00
4009 4226 1.752833 GACGGAAACCTCCACCTGT 59.247 57.895 0.00 0.00 42.58 4.00
4015 4242 2.159000 GGAAACCTCCACCTGTATACGG 60.159 54.545 4.57 4.57 41.96 4.02
4017 4244 2.537633 ACCTCCACCTGTATACGGAA 57.462 50.000 13.55 1.95 0.00 4.30
4024 4251 3.134081 CCACCTGTATACGGAAGAATGGT 59.866 47.826 13.55 0.00 0.00 3.55
4027 4254 6.342906 CACCTGTATACGGAAGAATGGTAAA 58.657 40.000 13.55 0.00 0.00 2.01
4033 4260 9.051679 TGTATACGGAAGAATGGTAAAATGATG 57.948 33.333 0.00 0.00 0.00 3.07
4036 4263 7.461182 ACGGAAGAATGGTAAAATGATGAAA 57.539 32.000 0.00 0.00 0.00 2.69
4045 4272 3.471495 AAAATGATGAAACGTCTCCGC 57.529 42.857 0.00 0.00 37.70 5.54
4046 4273 2.386661 AATGATGAAACGTCTCCGCT 57.613 45.000 0.00 0.00 37.70 5.52
4051 4278 3.119280 TGATGAAACGTCTCCGCTGATTA 60.119 43.478 0.00 0.00 37.70 1.75
4052 4279 2.876091 TGAAACGTCTCCGCTGATTAG 58.124 47.619 0.00 0.00 37.70 1.73
4053 4280 1.588861 GAAACGTCTCCGCTGATTAGC 59.411 52.381 0.00 0.00 46.62 3.09
4078 4305 3.708195 CTCCTGGCGAGCAAAAATG 57.292 52.632 0.00 0.00 0.00 2.32
4081 4308 2.487762 CTCCTGGCGAGCAAAAATGTTA 59.512 45.455 0.00 0.00 0.00 2.41
4082 4309 2.487762 TCCTGGCGAGCAAAAATGTTAG 59.512 45.455 0.00 0.00 0.00 2.34
4086 4313 2.417243 GGCGAGCAAAAATGTTAGCCAT 60.417 45.455 10.87 0.00 39.69 4.40
4088 4315 3.100817 CGAGCAAAAATGTTAGCCATCG 58.899 45.455 0.00 0.00 31.75 3.84
4089 4316 3.181511 CGAGCAAAAATGTTAGCCATCGA 60.182 43.478 0.00 0.00 31.75 3.59
4090 4317 4.346129 GAGCAAAAATGTTAGCCATCGAG 58.654 43.478 0.00 0.00 31.75 4.04
4091 4318 3.758554 AGCAAAAATGTTAGCCATCGAGT 59.241 39.130 0.00 0.00 31.75 4.18
4092 4319 4.218417 AGCAAAAATGTTAGCCATCGAGTT 59.782 37.500 0.00 0.00 31.75 3.01
4093 4320 5.414454 AGCAAAAATGTTAGCCATCGAGTTA 59.586 36.000 0.00 0.00 31.75 2.24
4095 4322 5.813080 AAAATGTTAGCCATCGAGTTACC 57.187 39.130 0.00 0.00 31.75 2.85
4096 4323 4.755266 AATGTTAGCCATCGAGTTACCT 57.245 40.909 0.00 0.00 31.75 3.08
4097 4324 3.795623 TGTTAGCCATCGAGTTACCTC 57.204 47.619 0.00 0.00 0.00 3.85
4110 4337 1.001597 GTTACCTCGTCCTCCTATGCG 60.002 57.143 0.00 0.00 0.00 4.73
4111 4338 1.170919 TACCTCGTCCTCCTATGCGC 61.171 60.000 0.00 0.00 0.00 6.09
4112 4339 2.490148 CCTCGTCCTCCTATGCGCA 61.490 63.158 14.96 14.96 0.00 6.09
4113 4340 1.007964 CTCGTCCTCCTATGCGCAG 60.008 63.158 18.32 2.21 0.00 5.18
4133 4360 0.638746 CGTAGCGTGTTCGTTGATCC 59.361 55.000 0.00 0.00 39.49 3.36
4134 4361 1.705256 GTAGCGTGTTCGTTGATCCA 58.295 50.000 0.00 0.00 39.49 3.41
4135 4362 1.389106 GTAGCGTGTTCGTTGATCCAC 59.611 52.381 0.00 0.00 39.49 4.02
4136 4363 0.033504 AGCGTGTTCGTTGATCCACT 59.966 50.000 0.00 0.00 39.49 4.00
4137 4364 0.438830 GCGTGTTCGTTGATCCACTC 59.561 55.000 0.00 0.00 39.49 3.51
4138 4365 0.708370 CGTGTTCGTTGATCCACTCG 59.292 55.000 0.00 0.00 0.00 4.18
4139 4366 0.438830 GTGTTCGTTGATCCACTCGC 59.561 55.000 0.00 0.00 0.00 5.03
4140 4367 0.032815 TGTTCGTTGATCCACTCGCA 59.967 50.000 0.00 0.00 0.00 5.10
4141 4368 1.337728 TGTTCGTTGATCCACTCGCAT 60.338 47.619 0.00 0.00 0.00 4.73
4142 4369 1.061131 GTTCGTTGATCCACTCGCATG 59.939 52.381 0.00 0.00 0.00 4.06
4143 4370 1.083806 TCGTTGATCCACTCGCATGC 61.084 55.000 7.91 7.91 0.00 4.06
4144 4371 1.360931 CGTTGATCCACTCGCATGCA 61.361 55.000 19.57 4.02 0.00 3.96
4145 4372 0.097674 GTTGATCCACTCGCATGCAC 59.902 55.000 19.57 0.00 0.00 4.57
4146 4373 1.360931 TTGATCCACTCGCATGCACG 61.361 55.000 19.57 10.12 0.00 5.34
4147 4374 2.512286 ATCCACTCGCATGCACGG 60.512 61.111 19.57 11.66 0.00 4.94
4148 4375 3.315142 ATCCACTCGCATGCACGGT 62.315 57.895 19.57 9.83 0.00 4.83
4149 4376 3.490759 CCACTCGCATGCACGGTC 61.491 66.667 19.57 0.00 0.00 4.79
4150 4377 3.842126 CACTCGCATGCACGGTCG 61.842 66.667 19.57 0.00 0.00 4.79
4151 4378 4.357947 ACTCGCATGCACGGTCGT 62.358 61.111 19.57 1.70 0.00 4.34
4152 4379 2.202557 CTCGCATGCACGGTCGTA 60.203 61.111 19.57 0.00 0.00 3.43
4153 4380 2.505337 TCGCATGCACGGTCGTAC 60.505 61.111 19.57 0.00 0.00 3.67
4154 4381 3.897502 CGCATGCACGGTCGTACG 61.898 66.667 19.57 9.53 40.31 3.67
4226 4453 2.911484 CGCACAAGCCACAGCACAT 61.911 57.895 0.00 0.00 43.56 3.21
4228 4455 0.942410 GCACAAGCCACAGCACATTG 60.942 55.000 0.00 0.00 43.56 2.82
4258 4500 0.392998 CAGGTCGATCTTTGGGGGTG 60.393 60.000 0.00 0.00 0.00 4.61
4262 4504 2.398554 CGATCTTTGGGGGTGCGTG 61.399 63.158 0.00 0.00 0.00 5.34
4276 4518 0.740868 TGCGTGTATTCTGCTCTGCC 60.741 55.000 0.00 0.00 0.00 4.85
4288 4533 4.337060 TCTGCCGGTGTCGTGTCG 62.337 66.667 1.90 0.00 33.95 4.35
4301 4546 1.291272 GTGTCGTCGCTAGGGGTTT 59.709 57.895 6.99 0.00 0.00 3.27
4302 4547 0.735287 GTGTCGTCGCTAGGGGTTTC 60.735 60.000 6.99 0.00 0.00 2.78
4303 4548 1.153686 GTCGTCGCTAGGGGTTTCC 60.154 63.158 6.99 0.00 0.00 3.13
4326 4571 0.469892 CTGCCAGGACAAGGGGTTTT 60.470 55.000 0.00 0.00 0.00 2.43
4333 4578 1.380650 ACAAGGGGTTTTGGCACGT 60.381 52.632 0.00 0.00 32.32 4.49
4336 4581 0.684805 AAGGGGTTTTGGCACGTTCA 60.685 50.000 0.00 0.00 0.00 3.18
4337 4582 0.469144 AGGGGTTTTGGCACGTTCAT 60.469 50.000 0.00 0.00 0.00 2.57
4379 4628 1.827789 GGGCGCTGCATCCCATTTA 60.828 57.895 18.70 0.00 42.18 1.40
4380 4629 1.360192 GGCGCTGCATCCCATTTAC 59.640 57.895 7.64 0.00 0.00 2.01
4381 4630 1.383456 GGCGCTGCATCCCATTTACA 61.383 55.000 7.64 0.00 0.00 2.41
4382 4631 0.248621 GCGCTGCATCCCATTTACAC 60.249 55.000 0.00 0.00 0.00 2.90
4383 4632 0.027979 CGCTGCATCCCATTTACACG 59.972 55.000 0.00 0.00 0.00 4.49
4386 4635 2.358898 GCTGCATCCCATTTACACGATT 59.641 45.455 0.00 0.00 0.00 3.34
4387 4636 3.563808 GCTGCATCCCATTTACACGATTA 59.436 43.478 0.00 0.00 0.00 1.75
4388 4637 4.554723 GCTGCATCCCATTTACACGATTAC 60.555 45.833 0.00 0.00 0.00 1.89
4389 4638 4.518249 TGCATCCCATTTACACGATTACA 58.482 39.130 0.00 0.00 0.00 2.41
4390 4639 5.129634 TGCATCCCATTTACACGATTACAT 58.870 37.500 0.00 0.00 0.00 2.29
4391 4640 6.292150 TGCATCCCATTTACACGATTACATA 58.708 36.000 0.00 0.00 0.00 2.29
4393 4642 6.203915 GCATCCCATTTACACGATTACATACA 59.796 38.462 0.00 0.00 0.00 2.29
4394 4643 7.094805 GCATCCCATTTACACGATTACATACAT 60.095 37.037 0.00 0.00 0.00 2.29
4395 4644 7.956420 TCCCATTTACACGATTACATACATC 57.044 36.000 0.00 0.00 0.00 3.06
4396 4645 7.732025 TCCCATTTACACGATTACATACATCT 58.268 34.615 0.00 0.00 0.00 2.90
4397 4646 7.655732 TCCCATTTACACGATTACATACATCTG 59.344 37.037 0.00 0.00 0.00 2.90
4405 4654 3.625649 TTACATACATCTGTGCCTGCA 57.374 42.857 0.00 0.00 0.00 4.41
4426 4675 0.586319 CCTGCACACGTCGAAAACAT 59.414 50.000 0.00 0.00 0.00 2.71
4427 4676 1.002900 CCTGCACACGTCGAAAACATT 60.003 47.619 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.371115 TTCGTCCCATTTCATTTCACTTC 57.629 39.130 0.00 0.00 0.00 3.01
1 2 5.528870 GTTTCGTCCCATTTCATTTCACTT 58.471 37.500 0.00 0.00 0.00 3.16
3 4 3.911964 CGTTTCGTCCCATTTCATTTCAC 59.088 43.478 0.00 0.00 0.00 3.18
18 20 2.527867 AACGCCGCTTTCGTTTCGT 61.528 52.632 2.42 0.00 46.47 3.85
19 21 2.067039 CAACGCCGCTTTCGTTTCG 61.067 57.895 5.06 0.00 46.47 3.46
20 22 2.354560 GCAACGCCGCTTTCGTTTC 61.355 57.895 5.06 0.00 46.47 2.78
21 23 2.353030 GCAACGCCGCTTTCGTTT 60.353 55.556 5.06 0.00 46.47 3.60
167 169 4.023193 ACTGTTTGCACTTCTTTAATCGGG 60.023 41.667 0.00 0.00 0.00 5.14
313 315 1.614903 CATAGCAGGAGCAGAGGAGAG 59.385 57.143 0.00 0.00 45.49 3.20
314 316 1.702182 CATAGCAGGAGCAGAGGAGA 58.298 55.000 0.00 0.00 45.49 3.71
353 355 1.358725 TTACTTGCTCGGCATCGCAC 61.359 55.000 0.00 0.00 38.76 5.34
354 356 1.079474 TTACTTGCTCGGCATCGCA 60.079 52.632 0.00 0.00 38.76 5.10
355 357 1.084370 ACTTACTTGCTCGGCATCGC 61.084 55.000 0.00 0.00 38.76 4.58
356 358 2.203800 TACTTACTTGCTCGGCATCG 57.796 50.000 0.00 0.00 38.76 3.84
357 359 2.608090 GGTTACTTACTTGCTCGGCATC 59.392 50.000 0.00 0.00 38.76 3.91
363 365 2.357075 GCCTGGGTTACTTACTTGCTC 58.643 52.381 0.00 0.00 0.00 4.26
384 386 0.458025 CTTCAGTTACGACCCGCTCC 60.458 60.000 0.00 0.00 0.00 4.70
388 390 2.334838 CTTTCCTTCAGTTACGACCCG 58.665 52.381 0.00 0.00 0.00 5.28
390 392 2.762745 TGCTTTCCTTCAGTTACGACC 58.237 47.619 0.00 0.00 0.00 4.79
393 395 3.564225 ACCTTTGCTTTCCTTCAGTTACG 59.436 43.478 0.00 0.00 0.00 3.18
400 402 4.617959 GGTGTTTACCTTTGCTTTCCTTC 58.382 43.478 0.00 0.00 43.97 3.46
550 554 1.529744 CTCCTCCTCCTCCTACTCCT 58.470 60.000 0.00 0.00 0.00 3.69
551 555 0.178973 GCTCCTCCTCCTCCTACTCC 60.179 65.000 0.00 0.00 0.00 3.85
552 556 0.553819 TGCTCCTCCTCCTCCTACTC 59.446 60.000 0.00 0.00 0.00 2.59
553 557 0.555769 CTGCTCCTCCTCCTCCTACT 59.444 60.000 0.00 0.00 0.00 2.57
554 558 0.553819 TCTGCTCCTCCTCCTCCTAC 59.446 60.000 0.00 0.00 0.00 3.18
555 559 0.850100 CTCTGCTCCTCCTCCTCCTA 59.150 60.000 0.00 0.00 0.00 2.94
556 560 1.620259 CTCTGCTCCTCCTCCTCCT 59.380 63.158 0.00 0.00 0.00 3.69
557 561 1.457455 CCTCTGCTCCTCCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
558 562 1.457455 CCCTCTGCTCCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
603 664 2.099427 CACGAGAGGCCCTACTAGTTTC 59.901 54.545 0.00 0.00 0.00 2.78
621 682 1.891919 CTTGACCACCACCACCACG 60.892 63.158 0.00 0.00 0.00 4.94
731 795 0.815734 TAGGAAAAGAGGGAGACGCG 59.184 55.000 3.53 3.53 0.00 6.01
812 876 2.878406 CAGAAACGGCAAGAAAAGGAGA 59.122 45.455 0.00 0.00 0.00 3.71
991 1055 2.565841 GTTCATGTCCATGGCTCCTAC 58.434 52.381 6.96 0.00 39.24 3.18
1106 1170 3.567797 GATGGTGCGCCGAGAAGC 61.568 66.667 12.58 0.00 37.67 3.86
1107 1171 2.125552 TGATGGTGCGCCGAGAAG 60.126 61.111 12.58 0.00 37.67 2.85
1122 1189 1.499368 TATGAGGATGCTGCTGGTGA 58.501 50.000 0.00 0.00 0.00 4.02
1131 1198 3.518705 AGGAGTCCATCATATGAGGATGC 59.481 47.826 18.64 14.70 40.60 3.91
1133 1200 4.465660 CGAAGGAGTCCATCATATGAGGAT 59.534 45.833 18.64 10.79 33.33 3.24
1134 1201 3.829026 CGAAGGAGTCCATCATATGAGGA 59.171 47.826 18.64 16.95 0.00 3.71
1135 1202 3.616076 GCGAAGGAGTCCATCATATGAGG 60.616 52.174 12.86 11.09 0.00 3.86
1136 1203 3.583806 GCGAAGGAGTCCATCATATGAG 58.416 50.000 12.86 3.67 0.00 2.90
1137 1204 2.029918 CGCGAAGGAGTCCATCATATGA 60.030 50.000 12.86 8.10 0.00 2.15
1140 1207 1.337071 GACGCGAAGGAGTCCATCATA 59.663 52.381 15.93 0.00 37.04 2.15
1242 1309 4.055227 TCCACCGGGAAATGGCCC 62.055 66.667 6.32 0.00 41.32 5.80
1401 1468 2.499685 CCGCCTTCCTTCCTACGG 59.500 66.667 0.00 0.00 0.00 4.02
1548 1615 2.571212 AGCTGGAAACACGATGAACAA 58.429 42.857 0.00 0.00 35.60 2.83
1606 1691 2.422479 CCATCACCTGAATGAAGCACAG 59.578 50.000 0.00 0.00 30.82 3.66
1632 1720 3.554960 CGTTGGAAGACTGAACCTGATCA 60.555 47.826 0.00 0.00 0.00 2.92
1836 1924 2.386661 ATCTGTGTACCCTTTCAGCG 57.613 50.000 0.00 0.00 0.00 5.18
1914 2002 2.399856 TGGTTTCAACACCACTCGC 58.600 52.632 0.00 0.00 42.27 5.03
2028 2116 3.358118 ACTTGTTTCGGTGGAAAAAGGA 58.642 40.909 11.99 0.00 43.39 3.36
2045 2133 5.107453 GGACTGATCAGAAACACGTAACTTG 60.107 44.000 29.27 0.00 0.00 3.16
2084 2172 7.823745 AGACACAGAACATCCTTTACATTTT 57.176 32.000 0.00 0.00 0.00 1.82
2188 2276 2.091588 CGAATTGTTGGTCGTTACCTCG 59.908 50.000 0.00 0.00 46.91 4.63
2269 2365 3.357079 CCCTTGCACCTGACACGC 61.357 66.667 0.00 0.00 0.00 5.34
2281 2377 3.815401 CAGTGGTTGTACTTCTTCCCTTG 59.185 47.826 0.00 0.00 0.00 3.61
2298 2394 4.819105 TTCAGTTATCTGTACCCAGTGG 57.181 45.455 0.63 0.63 41.91 4.00
2305 2433 8.934507 AGAGCAAAGTATTCAGTTATCTGTAC 57.065 34.615 0.83 0.00 41.91 2.90
2346 2474 5.127845 CAGTTATCTGTACCCAGTGATCACT 59.872 44.000 22.89 22.89 39.82 3.41
2347 2475 5.127194 TCAGTTATCTGTACCCAGTGATCAC 59.873 44.000 18.47 18.47 41.91 3.06
2348 2476 5.269189 TCAGTTATCTGTACCCAGTGATCA 58.731 41.667 0.00 0.00 41.91 2.92
2349 2477 5.361285 ACTCAGTTATCTGTACCCAGTGATC 59.639 44.000 0.00 0.00 41.91 2.92
2350 2478 5.273208 ACTCAGTTATCTGTACCCAGTGAT 58.727 41.667 0.00 0.00 41.91 3.06
2351 2479 4.673968 ACTCAGTTATCTGTACCCAGTGA 58.326 43.478 0.00 0.00 41.91 3.41
2352 2480 5.652891 AGTACTCAGTTATCTGTACCCAGTG 59.347 44.000 0.00 0.00 41.91 3.66
2353 2481 5.828871 AGTACTCAGTTATCTGTACCCAGT 58.171 41.667 0.00 0.20 41.91 4.00
2354 2482 6.777213 AAGTACTCAGTTATCTGTACCCAG 57.223 41.667 0.00 0.00 41.91 4.45
2355 2483 6.573680 GCAAAGTACTCAGTTATCTGTACCCA 60.574 42.308 0.00 0.00 41.91 4.51
2356 2484 5.811100 GCAAAGTACTCAGTTATCTGTACCC 59.189 44.000 0.00 0.00 41.91 3.69
2357 2485 6.631962 AGCAAAGTACTCAGTTATCTGTACC 58.368 40.000 0.00 0.00 41.91 3.34
2358 2486 7.540299 AGAGCAAAGTACTCAGTTATCTGTAC 58.460 38.462 0.00 0.00 41.91 2.90
2359 2487 7.704578 AGAGCAAAGTACTCAGTTATCTGTA 57.295 36.000 0.00 0.00 41.91 2.74
2360 2488 6.597832 AGAGCAAAGTACTCAGTTATCTGT 57.402 37.500 0.00 0.00 41.91 3.41
2361 2489 7.767261 ACTAGAGCAAAGTACTCAGTTATCTG 58.233 38.462 0.00 0.00 42.54 2.90
2362 2490 7.948034 ACTAGAGCAAAGTACTCAGTTATCT 57.052 36.000 0.00 0.00 36.58 1.98
2363 2491 9.505995 GTTACTAGAGCAAAGTACTCAGTTATC 57.494 37.037 0.00 0.00 36.58 1.75
2364 2492 9.245481 AGTTACTAGAGCAAAGTACTCAGTTAT 57.755 33.333 0.00 0.00 36.58 1.89
2365 2493 8.632906 AGTTACTAGAGCAAAGTACTCAGTTA 57.367 34.615 0.00 0.00 36.58 2.24
2366 2494 7.527568 AGTTACTAGAGCAAAGTACTCAGTT 57.472 36.000 0.00 0.00 36.58 3.16
2367 2495 7.148205 GCTAGTTACTAGAGCAAAGTACTCAGT 60.148 40.741 22.14 0.00 36.26 3.41
2368 2496 7.148222 TGCTAGTTACTAGAGCAAAGTACTCAG 60.148 40.741 22.14 0.00 43.03 3.35
2369 2497 6.657966 TGCTAGTTACTAGAGCAAAGTACTCA 59.342 38.462 22.14 4.09 43.03 3.41
2370 2498 7.086230 TGCTAGTTACTAGAGCAAAGTACTC 57.914 40.000 22.14 1.63 43.03 2.59
2379 2507 6.565234 TCACTGAAATGCTAGTTACTAGAGC 58.435 40.000 22.14 11.53 36.26 4.09
2380 2508 8.409371 TGATCACTGAAATGCTAGTTACTAGAG 58.591 37.037 22.14 11.74 36.26 2.43
2381 2509 8.293699 TGATCACTGAAATGCTAGTTACTAGA 57.706 34.615 22.14 8.48 36.26 2.43
2382 2510 8.194104 ACTGATCACTGAAATGCTAGTTACTAG 58.806 37.037 14.56 14.56 37.16 2.57
2383 2511 7.976175 CACTGATCACTGAAATGCTAGTTACTA 59.024 37.037 0.00 0.00 0.00 1.82
2384 2512 6.815641 CACTGATCACTGAAATGCTAGTTACT 59.184 38.462 0.00 0.00 0.00 2.24
2385 2513 6.036517 CCACTGATCACTGAAATGCTAGTTAC 59.963 42.308 4.11 0.00 0.00 2.50
2386 2514 6.070824 TCCACTGATCACTGAAATGCTAGTTA 60.071 38.462 4.11 0.00 0.00 2.24
2387 2515 4.940046 CCACTGATCACTGAAATGCTAGTT 59.060 41.667 4.11 0.00 0.00 2.24
2388 2516 4.223700 TCCACTGATCACTGAAATGCTAGT 59.776 41.667 4.11 0.00 0.00 2.57
2389 2517 4.763073 TCCACTGATCACTGAAATGCTAG 58.237 43.478 4.11 0.00 0.00 3.42
2390 2518 4.824479 TCCACTGATCACTGAAATGCTA 57.176 40.909 4.11 0.00 0.00 3.49
2391 2519 3.708403 TCCACTGATCACTGAAATGCT 57.292 42.857 4.11 0.00 0.00 3.79
2392 2520 4.877823 TGTATCCACTGATCACTGAAATGC 59.122 41.667 4.11 2.75 32.18 3.56
2393 2521 6.343703 TCTGTATCCACTGATCACTGAAATG 58.656 40.000 4.11 0.00 32.18 2.32
2394 2522 6.550938 TCTGTATCCACTGATCACTGAAAT 57.449 37.500 4.11 1.24 32.18 2.17
2395 2523 6.550938 ATCTGTATCCACTGATCACTGAAA 57.449 37.500 4.11 0.00 38.55 2.69
2396 2524 7.343057 AGTTATCTGTATCCACTGATCACTGAA 59.657 37.037 4.11 0.00 41.86 3.02
2397 2525 6.836007 AGTTATCTGTATCCACTGATCACTGA 59.164 38.462 4.11 0.00 41.86 3.41
2398 2526 6.922407 CAGTTATCTGTATCCACTGATCACTG 59.078 42.308 17.14 17.14 46.82 3.66
2407 2535 8.079203 CACTACTGATCAGTTATCTGTATCCAC 58.921 40.741 32.14 0.00 43.78 4.02
2449 2577 2.761559 TGGTTTACCATCACTGACGTG 58.238 47.619 0.00 0.00 42.01 4.49
2468 2596 1.261619 GAGTGTCAAAACTCTGCGGTG 59.738 52.381 0.00 0.00 42.78 4.94
2472 2600 2.545946 GGAGTGAGTGTCAAAACTCTGC 59.454 50.000 5.97 0.12 45.69 4.26
2503 2632 4.025896 CAGCTTCATCGATAAGAACTGCAG 60.026 45.833 13.48 13.48 0.00 4.41
2604 2733 1.780309 ACTGGTTGTGGAGGGAATTCA 59.220 47.619 7.93 0.00 0.00 2.57
2605 2734 2.558359 CAACTGGTTGTGGAGGGAATTC 59.442 50.000 0.00 0.00 35.92 2.17
2607 2736 1.823250 GCAACTGGTTGTGGAGGGAAT 60.823 52.381 13.85 0.00 42.31 3.01
2609 2738 1.150536 GCAACTGGTTGTGGAGGGA 59.849 57.895 13.85 0.00 42.31 4.20
2611 2740 3.763671 GGCAACTGGTTGTGGAGG 58.236 61.111 13.85 0.00 42.31 4.30
2667 2796 0.944386 CTGTTGTTGACAAGGGACCG 59.056 55.000 0.00 0.00 37.93 4.79
2668 2797 0.668535 GCTGTTGTTGACAAGGGACC 59.331 55.000 0.00 0.00 37.93 4.46
2669 2798 1.680338 AGCTGTTGTTGACAAGGGAC 58.320 50.000 0.00 0.00 37.93 4.46
2710 2842 1.268352 GAGAATCCCATCGACGAGGAG 59.732 57.143 11.71 0.00 31.94 3.69
2803 2935 2.052157 CTTCTGAACACGTCCGAGTTC 58.948 52.381 18.74 18.74 42.94 3.01
2902 3048 8.405531 TGGAGTAACTAAACACGGTATGTATAC 58.594 37.037 0.00 0.00 42.31 1.47
2903 3049 8.518430 TGGAGTAACTAAACACGGTATGTATA 57.482 34.615 0.00 0.00 42.31 1.47
2904 3050 7.408756 TGGAGTAACTAAACACGGTATGTAT 57.591 36.000 0.00 0.00 42.31 2.29
2907 3053 4.565564 GCTGGAGTAACTAAACACGGTATG 59.434 45.833 0.00 0.00 0.00 2.39
2980 3129 3.493873 GCCGAGGTACTATAGTTTTGGGG 60.494 52.174 11.40 8.85 41.55 4.96
2989 3138 3.623703 TGTTGACTGCCGAGGTACTATA 58.376 45.455 0.00 0.00 41.55 1.31
3000 3151 0.823356 TTTGGGAGCTGTTGACTGCC 60.823 55.000 9.04 0.00 45.29 4.85
3027 3178 4.282195 GTCTATCTAGCACATTGGTAGGCT 59.718 45.833 11.45 0.00 45.63 4.58
3028 3179 4.561105 GTCTATCTAGCACATTGGTAGGC 58.439 47.826 11.45 0.00 45.63 3.93
3174 3329 2.034842 CGCACACGTTAGCTATGTAAGC 60.035 50.000 7.32 3.75 42.60 3.09
3201 3356 5.313520 TCCACATGTTGTTTATGCATGAG 57.686 39.130 10.16 3.10 41.62 2.90
3247 3402 2.019984 AGCAAGCAACCAAGCTATAGC 58.980 47.619 17.33 17.33 45.89 2.97
3251 3406 2.205022 ATCAGCAAGCAACCAAGCTA 57.795 45.000 0.00 0.00 45.89 3.32
3448 3603 3.991725 CTTCAGGAGGCTGGCTGGC 62.992 68.421 9.06 10.02 42.15 4.85
3449 3604 2.254737 CTCTTCAGGAGGCTGGCTGG 62.255 65.000 9.06 0.00 38.35 4.85
3451 3606 2.668120 GCTCTTCAGGAGGCTGGCT 61.668 63.158 2.24 2.24 42.08 4.75
3452 3607 2.124778 GCTCTTCAGGAGGCTGGC 60.125 66.667 0.00 0.00 42.08 4.85
3458 3613 2.581354 CGGGTGGCTCTTCAGGAG 59.419 66.667 0.00 0.00 44.49 3.69
3459 3614 3.003173 CCGGGTGGCTCTTCAGGA 61.003 66.667 0.00 0.00 0.00 3.86
3516 3688 1.957668 TGGCGGTCAGATGATTGATG 58.042 50.000 0.00 0.00 0.00 3.07
3548 3720 2.113433 CATGTGGCCTCTGCTCTGC 61.113 63.158 3.32 0.00 37.74 4.26
3549 3721 2.113433 GCATGTGGCCTCTGCTCTG 61.113 63.158 16.87 5.31 37.74 3.35
3550 3722 2.271497 GCATGTGGCCTCTGCTCT 59.729 61.111 16.87 0.00 37.74 4.09
3551 3723 2.045634 TGCATGTGGCCTCTGCTC 60.046 61.111 21.58 5.74 43.89 4.26
3552 3724 2.360852 GTGCATGTGGCCTCTGCT 60.361 61.111 21.58 1.45 43.89 4.24
3690 3883 2.412325 CCCGAATACAACAAGAACACGC 60.412 50.000 0.00 0.00 0.00 5.34
3751 3944 2.489329 CACGCCACAGGATTTCATTTCT 59.511 45.455 0.00 0.00 0.00 2.52
3832 4025 0.456221 GCAGCAGCAATTCATCAGCT 59.544 50.000 0.00 0.00 41.58 4.24
3835 4028 0.172578 GCAGCAGCAGCAATTCATCA 59.827 50.000 4.63 0.00 45.49 3.07
3837 4030 0.173481 CAGCAGCAGCAGCAATTCAT 59.827 50.000 12.92 0.00 45.49 2.57
3838 4031 1.584495 CAGCAGCAGCAGCAATTCA 59.416 52.632 12.92 0.00 45.49 2.57
3868 4085 0.309922 CCCGCATTGCATCATGAGAC 59.690 55.000 9.69 0.00 0.00 3.36
3886 4103 0.479378 TCTACCCAACACAAACCCCC 59.521 55.000 0.00 0.00 0.00 5.40
3887 4104 2.368311 TTCTACCCAACACAAACCCC 57.632 50.000 0.00 0.00 0.00 4.95
3888 4105 4.100344 ACAAATTCTACCCAACACAAACCC 59.900 41.667 0.00 0.00 0.00 4.11
3889 4106 5.270893 ACAAATTCTACCCAACACAAACC 57.729 39.130 0.00 0.00 0.00 3.27
3890 4107 5.751509 GGAACAAATTCTACCCAACACAAAC 59.248 40.000 0.00 0.00 34.98 2.93
3891 4108 5.450688 CGGAACAAATTCTACCCAACACAAA 60.451 40.000 0.00 0.00 34.98 2.83
3892 4109 4.036971 CGGAACAAATTCTACCCAACACAA 59.963 41.667 0.00 0.00 34.98 3.33
3894 4111 3.566742 ACGGAACAAATTCTACCCAACAC 59.433 43.478 0.00 0.00 34.98 3.32
3895 4112 3.566322 CACGGAACAAATTCTACCCAACA 59.434 43.478 0.00 0.00 34.98 3.33
3898 4115 3.142951 CACACGGAACAAATTCTACCCA 58.857 45.455 0.00 0.00 34.98 4.51
3899 4116 3.187842 GTCACACGGAACAAATTCTACCC 59.812 47.826 0.00 0.00 34.98 3.69
3900 4117 4.062991 AGTCACACGGAACAAATTCTACC 58.937 43.478 0.00 0.00 34.98 3.18
3901 4118 5.007332 ACAAGTCACACGGAACAAATTCTAC 59.993 40.000 0.00 0.00 34.98 2.59
3902 4119 5.007234 CACAAGTCACACGGAACAAATTCTA 59.993 40.000 0.00 0.00 34.98 2.10
3904 4121 4.035017 CACAAGTCACACGGAACAAATTC 58.965 43.478 0.00 0.00 0.00 2.17
3905 4122 3.442273 ACACAAGTCACACGGAACAAATT 59.558 39.130 0.00 0.00 0.00 1.82
3906 4123 3.013921 ACACAAGTCACACGGAACAAAT 58.986 40.909 0.00 0.00 0.00 2.32
3907 4124 2.428491 ACACAAGTCACACGGAACAAA 58.572 42.857 0.00 0.00 0.00 2.83
3909 4126 1.735018 CAACACAAGTCACACGGAACA 59.265 47.619 0.00 0.00 0.00 3.18
3911 4128 0.730265 GCAACACAAGTCACACGGAA 59.270 50.000 0.00 0.00 0.00 4.30
3912 4129 0.107897 AGCAACACAAGTCACACGGA 60.108 50.000 0.00 0.00 0.00 4.69
3913 4130 0.304705 GAGCAACACAAGTCACACGG 59.695 55.000 0.00 0.00 0.00 4.94
3914 4131 0.304705 GGAGCAACACAAGTCACACG 59.695 55.000 0.00 0.00 0.00 4.49
3915 4132 0.304705 CGGAGCAACACAAGTCACAC 59.695 55.000 0.00 0.00 0.00 3.82
3916 4133 0.107897 ACGGAGCAACACAAGTCACA 60.108 50.000 0.00 0.00 0.00 3.58
3917 4134 1.014352 AACGGAGCAACACAAGTCAC 58.986 50.000 0.00 0.00 0.00 3.67
3918 4135 1.668751 GAAACGGAGCAACACAAGTCA 59.331 47.619 0.00 0.00 0.00 3.41
3919 4136 1.332904 CGAAACGGAGCAACACAAGTC 60.333 52.381 0.00 0.00 0.00 3.01
3920 4137 0.655733 CGAAACGGAGCAACACAAGT 59.344 50.000 0.00 0.00 0.00 3.16
3921 4138 0.934496 TCGAAACGGAGCAACACAAG 59.066 50.000 0.00 0.00 0.00 3.16
3922 4139 1.262950 CATCGAAACGGAGCAACACAA 59.737 47.619 0.00 0.00 0.00 3.33
3923 4140 0.865111 CATCGAAACGGAGCAACACA 59.135 50.000 0.00 0.00 0.00 3.72
3924 4141 0.452784 GCATCGAAACGGAGCAACAC 60.453 55.000 0.00 0.00 0.00 3.32
3925 4142 0.602638 AGCATCGAAACGGAGCAACA 60.603 50.000 0.00 0.00 31.83 3.33
3926 4143 0.095417 GAGCATCGAAACGGAGCAAC 59.905 55.000 0.00 0.00 31.83 4.17
3927 4144 0.320334 TGAGCATCGAAACGGAGCAA 60.320 50.000 0.00 0.00 38.61 3.91
3928 4145 0.737367 CTGAGCATCGAAACGGAGCA 60.737 55.000 0.00 0.00 38.61 4.26
3929 4146 1.424493 CCTGAGCATCGAAACGGAGC 61.424 60.000 0.00 0.00 38.61 4.70
3930 4147 0.173481 TCCTGAGCATCGAAACGGAG 59.827 55.000 0.00 0.00 38.61 4.63
3931 4148 0.824109 ATCCTGAGCATCGAAACGGA 59.176 50.000 0.00 0.00 38.61 4.69
3932 4149 1.212616 GATCCTGAGCATCGAAACGG 58.787 55.000 0.00 0.00 38.61 4.44
3933 4150 1.857217 CTGATCCTGAGCATCGAAACG 59.143 52.381 0.00 0.00 38.61 3.60
3934 4151 2.863137 GACTGATCCTGAGCATCGAAAC 59.137 50.000 0.00 0.00 38.61 2.78
3935 4152 2.159043 GGACTGATCCTGAGCATCGAAA 60.159 50.000 0.00 0.00 42.45 3.46
3936 4153 1.410517 GGACTGATCCTGAGCATCGAA 59.589 52.381 0.00 0.00 42.45 3.71
3937 4154 1.035923 GGACTGATCCTGAGCATCGA 58.964 55.000 0.00 0.00 42.45 3.59
3938 4155 3.584586 GGACTGATCCTGAGCATCG 57.415 57.895 0.00 0.00 42.45 3.84
3947 4164 2.436173 CCCCAAGTTCTAGGACTGATCC 59.564 54.545 3.86 0.00 46.69 3.36
3948 4165 2.436173 CCCCCAAGTTCTAGGACTGATC 59.564 54.545 3.86 0.00 0.00 2.92
3949 4166 2.482494 CCCCCAAGTTCTAGGACTGAT 58.518 52.381 3.86 0.00 0.00 2.90
3950 4167 1.952621 CCCCCAAGTTCTAGGACTGA 58.047 55.000 3.86 0.00 0.00 3.41
3968 4185 2.519780 TTTGAACACCACCCGCCC 60.520 61.111 0.00 0.00 0.00 6.13
3970 4187 1.995646 AACGTTTGAACACCACCCGC 61.996 55.000 0.00 0.00 0.00 6.13
3971 4188 0.248296 CAACGTTTGAACACCACCCG 60.248 55.000 0.00 0.00 0.00 5.28
3972 4189 0.101579 CCAACGTTTGAACACCACCC 59.898 55.000 0.00 0.00 0.00 4.61
3975 4192 0.727970 CGTCCAACGTTTGAACACCA 59.272 50.000 3.30 0.00 36.74 4.17
3977 4194 1.008329 TCCGTCCAACGTTTGAACAC 58.992 50.000 3.30 0.00 40.58 3.32
3978 4195 1.735386 TTCCGTCCAACGTTTGAACA 58.265 45.000 3.30 0.00 40.58 3.18
3996 4213 2.823959 TCCGTATACAGGTGGAGGTTT 58.176 47.619 3.32 0.00 0.00 3.27
4000 4217 4.501571 CCATTCTTCCGTATACAGGTGGAG 60.502 50.000 3.32 6.12 0.00 3.86
4001 4218 3.386726 CCATTCTTCCGTATACAGGTGGA 59.613 47.826 3.32 0.00 0.00 4.02
4002 4219 3.134081 ACCATTCTTCCGTATACAGGTGG 59.866 47.826 3.32 10.15 0.00 4.61
4003 4220 4.402056 ACCATTCTTCCGTATACAGGTG 57.598 45.455 3.32 4.14 0.00 4.00
4005 4222 7.713507 TCATTTTACCATTCTTCCGTATACAGG 59.286 37.037 3.32 5.62 0.00 4.00
4008 4225 9.268268 TCATCATTTTACCATTCTTCCGTATAC 57.732 33.333 0.00 0.00 0.00 1.47
4009 4226 9.839817 TTCATCATTTTACCATTCTTCCGTATA 57.160 29.630 0.00 0.00 0.00 1.47
4015 4242 8.237267 AGACGTTTCATCATTTTACCATTCTTC 58.763 33.333 0.00 0.00 0.00 2.87
4017 4244 7.148239 GGAGACGTTTCATCATTTTACCATTCT 60.148 37.037 8.50 0.00 0.00 2.40
4053 4280 4.504916 CTCGCCAGGAGCACCGAG 62.505 72.222 0.00 0.00 44.04 4.63
4073 4300 5.813080 GGTAACTCGATGGCTAACATTTT 57.187 39.130 0.00 0.00 40.72 1.82
4090 4317 1.001597 CGCATAGGAGGACGAGGTAAC 60.002 57.143 0.00 0.00 0.00 2.50
4091 4318 1.315690 CGCATAGGAGGACGAGGTAA 58.684 55.000 0.00 0.00 0.00 2.85
4092 4319 1.170919 GCGCATAGGAGGACGAGGTA 61.171 60.000 0.30 0.00 0.00 3.08
4093 4320 2.491022 GCGCATAGGAGGACGAGGT 61.491 63.158 0.30 0.00 0.00 3.85
4095 4322 1.007964 CTGCGCATAGGAGGACGAG 60.008 63.158 12.24 0.00 34.34 4.18
4096 4323 3.120105 CTGCGCATAGGAGGACGA 58.880 61.111 12.24 0.00 34.34 4.20
4097 4324 2.659897 GCTGCGCATAGGAGGACG 60.660 66.667 12.24 0.00 38.88 4.79
4098 4325 2.071844 TACGCTGCGCATAGGAGGAC 62.072 60.000 23.51 0.00 38.88 3.85
4099 4326 1.796190 CTACGCTGCGCATAGGAGGA 61.796 60.000 23.51 0.00 38.88 3.71
4100 4327 1.372251 CTACGCTGCGCATAGGAGG 60.372 63.158 23.51 0.00 38.88 4.30
4102 4329 2.027605 GCTACGCTGCGCATAGGA 59.972 61.111 23.51 3.31 0.00 2.94
4110 4337 2.654912 AACGAACACGCTACGCTGC 61.655 57.895 0.00 0.00 0.00 5.25
4111 4338 1.127817 CAACGAACACGCTACGCTG 59.872 57.895 0.00 0.00 0.00 5.18
4112 4339 0.388134 ATCAACGAACACGCTACGCT 60.388 50.000 0.00 0.00 0.00 5.07
4113 4340 0.023354 GATCAACGAACACGCTACGC 59.977 55.000 0.00 0.00 0.00 4.42
4114 4341 0.638746 GGATCAACGAACACGCTACG 59.361 55.000 0.00 0.00 0.00 3.51
4115 4342 1.389106 GTGGATCAACGAACACGCTAC 59.611 52.381 0.00 0.00 0.00 3.58
4116 4343 1.271379 AGTGGATCAACGAACACGCTA 59.729 47.619 0.00 0.00 38.78 4.26
4117 4344 0.033504 AGTGGATCAACGAACACGCT 59.966 50.000 0.00 0.00 38.78 5.07
4118 4345 0.438830 GAGTGGATCAACGAACACGC 59.561 55.000 0.00 0.00 38.78 5.34
4119 4346 0.708370 CGAGTGGATCAACGAACACG 59.292 55.000 0.00 0.00 38.78 4.49
4120 4347 0.438830 GCGAGTGGATCAACGAACAC 59.561 55.000 0.00 0.00 0.00 3.32
4121 4348 0.032815 TGCGAGTGGATCAACGAACA 59.967 50.000 0.00 0.00 0.00 3.18
4122 4349 1.061131 CATGCGAGTGGATCAACGAAC 59.939 52.381 0.00 0.00 0.00 3.95
4123 4350 1.358877 CATGCGAGTGGATCAACGAA 58.641 50.000 0.00 0.00 0.00 3.85
4124 4351 1.083806 GCATGCGAGTGGATCAACGA 61.084 55.000 0.00 0.00 0.00 3.85
4125 4352 1.349627 GCATGCGAGTGGATCAACG 59.650 57.895 0.00 0.00 0.00 4.10
4126 4353 0.097674 GTGCATGCGAGTGGATCAAC 59.902 55.000 14.09 0.00 0.00 3.18
4127 4354 1.360931 CGTGCATGCGAGTGGATCAA 61.361 55.000 14.09 0.00 0.00 2.57
4128 4355 1.810853 CGTGCATGCGAGTGGATCA 60.811 57.895 14.09 0.00 0.00 2.92
4129 4356 2.528743 CCGTGCATGCGAGTGGATC 61.529 63.158 14.09 0.00 0.00 3.36
4130 4357 2.512286 CCGTGCATGCGAGTGGAT 60.512 61.111 14.09 0.00 0.00 3.41
4131 4358 3.932580 GACCGTGCATGCGAGTGGA 62.933 63.158 19.99 0.00 0.00 4.02
4132 4359 3.490759 GACCGTGCATGCGAGTGG 61.491 66.667 14.09 13.86 0.00 4.00
4133 4360 3.842126 CGACCGTGCATGCGAGTG 61.842 66.667 14.09 3.97 0.00 3.51
4134 4361 2.985117 TACGACCGTGCATGCGAGT 61.985 57.895 14.09 10.06 0.00 4.18
4135 4362 2.202557 TACGACCGTGCATGCGAG 60.203 61.111 14.09 9.25 0.00 5.03
4136 4363 2.505337 GTACGACCGTGCATGCGA 60.505 61.111 14.09 0.00 0.00 5.10
4137 4364 3.897502 CGTACGACCGTGCATGCG 61.898 66.667 10.44 2.14 0.00 4.73
4138 4365 3.550992 CCGTACGACCGTGCATGC 61.551 66.667 18.76 11.82 0.00 4.06
4139 4366 3.550992 GCCGTACGACCGTGCATG 61.551 66.667 18.76 0.00 0.00 4.06
4209 4436 0.942410 CAATGTGCTGTGGCTTGTGC 60.942 55.000 0.00 0.00 39.59 4.57
4211 4438 1.364901 GCAATGTGCTGTGGCTTGT 59.635 52.632 0.00 0.00 40.96 3.16
4228 4455 4.048241 AGATCGACCTGCTTTTAGTAGC 57.952 45.455 0.00 0.00 41.59 3.58
4233 4460 3.343617 CCCAAAGATCGACCTGCTTTTA 58.656 45.455 0.00 0.00 30.00 1.52
4237 4468 1.604378 CCCCAAAGATCGACCTGCT 59.396 57.895 0.00 0.00 0.00 4.24
4238 4469 1.452108 CCCCCAAAGATCGACCTGC 60.452 63.158 0.00 0.00 0.00 4.85
4241 4472 1.749258 GCACCCCCAAAGATCGACC 60.749 63.158 0.00 0.00 0.00 4.79
4258 4500 1.756375 CGGCAGAGCAGAATACACGC 61.756 60.000 0.00 0.00 0.00 5.34
4262 4504 0.108138 ACACCGGCAGAGCAGAATAC 60.108 55.000 0.00 0.00 0.00 1.89
4276 4518 3.299304 TAGCGACGACACGACACCG 62.299 63.158 0.00 0.00 42.50 4.94
4288 4533 1.449778 GCAGGAAACCCCTAGCGAC 60.450 63.158 0.00 0.00 45.60 5.19
4301 4546 2.853542 TTGTCCTGGCAGGCAGGA 60.854 61.111 36.27 36.27 45.76 3.86
4302 4547 2.360852 CTTGTCCTGGCAGGCAGG 60.361 66.667 33.05 33.05 41.08 4.85
4303 4548 2.360852 CCTTGTCCTGGCAGGCAG 60.361 66.667 29.02 21.54 34.61 4.85
4304 4549 3.970410 CCCTTGTCCTGGCAGGCA 61.970 66.667 29.02 24.75 34.61 4.75
4305 4550 4.748144 CCCCTTGTCCTGGCAGGC 62.748 72.222 29.02 22.51 34.61 4.85
4308 4553 0.758685 CAAAACCCCTTGTCCTGGCA 60.759 55.000 0.00 0.00 0.00 4.92
4326 4571 2.696989 ATCTGATCATGAACGTGCCA 57.303 45.000 0.00 0.00 0.00 4.92
4333 4578 4.162131 TCGTTGGAGGAATCTGATCATGAA 59.838 41.667 0.00 0.00 0.00 2.57
4336 4581 3.963374 TCTCGTTGGAGGAATCTGATCAT 59.037 43.478 0.00 0.00 40.85 2.45
4337 4582 3.365472 TCTCGTTGGAGGAATCTGATCA 58.635 45.455 0.00 0.00 40.85 2.92
4363 4612 0.248621 GTGTAAATGGGATGCAGCGC 60.249 55.000 12.67 12.67 0.00 5.92
4370 4619 8.375506 AGATGTATGTAATCGTGTAAATGGGAT 58.624 33.333 0.00 0.00 0.00 3.85
4373 4622 8.275632 CACAGATGTATGTAATCGTGTAAATGG 58.724 37.037 0.00 0.00 30.72 3.16
4374 4623 7.793888 GCACAGATGTATGTAATCGTGTAAATG 59.206 37.037 0.00 0.00 34.25 2.32
4375 4624 7.042051 GGCACAGATGTATGTAATCGTGTAAAT 60.042 37.037 0.00 0.00 34.25 1.40
4377 4626 5.751509 GGCACAGATGTATGTAATCGTGTAA 59.248 40.000 0.00 0.00 34.25 2.41
4379 4628 4.119862 GGCACAGATGTATGTAATCGTGT 58.880 43.478 0.00 0.00 34.25 4.49
4380 4629 4.209911 CAGGCACAGATGTATGTAATCGTG 59.790 45.833 0.00 0.00 34.56 4.35
4381 4630 4.371786 CAGGCACAGATGTATGTAATCGT 58.628 43.478 0.00 0.00 0.00 3.73
4382 4631 3.185188 GCAGGCACAGATGTATGTAATCG 59.815 47.826 0.00 0.00 0.00 3.34
4383 4632 4.129380 TGCAGGCACAGATGTATGTAATC 58.871 43.478 0.00 0.00 0.00 1.75
4386 4635 2.742856 GCTGCAGGCACAGATGTATGTA 60.743 50.000 17.12 0.00 40.25 2.29
4387 4636 2.015588 GCTGCAGGCACAGATGTATGT 61.016 52.381 17.12 0.00 40.25 2.29
4388 4637 0.661552 GCTGCAGGCACAGATGTATG 59.338 55.000 17.12 0.00 40.25 2.39
4389 4638 0.465097 GGCTGCAGGCACAGATGTAT 60.465 55.000 33.31 0.00 44.01 2.29
4390 4639 1.078214 GGCTGCAGGCACAGATGTA 60.078 57.895 33.31 0.00 44.01 2.29
4391 4640 2.360852 GGCTGCAGGCACAGATGT 60.361 61.111 33.31 0.00 44.01 3.06
4393 4642 2.045242 CAGGCTGCAGGCACAGAT 60.045 61.111 37.94 17.65 44.01 2.90
4405 4654 1.522806 TTTTCGACGTGTGCAGGCT 60.523 52.632 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.