Multiple sequence alignment - TraesCS5A01G250200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G250200 chr5A 100.000 3206 0 0 1 3206 465546246 465549451 0.000000 5921.0
1 TraesCS5A01G250200 chr5B 94.178 3229 119 29 1 3206 430471127 430474309 0.000000 4857.0
2 TraesCS5A01G250200 chr5B 95.000 40 2 0 2587 2626 430473642 430473681 0.000003 63.9
3 TraesCS5A01G250200 chr5D 96.968 2441 64 5 1 2435 364399641 364402077 0.000000 4089.0
4 TraesCS5A01G250200 chr5D 91.594 690 54 4 2518 3206 364402114 364402800 0.000000 950.0
5 TraesCS5A01G250200 chr7D 87.572 869 95 7 1008 1875 318252573 318251717 0.000000 994.0
6 TraesCS5A01G250200 chr7B 87.016 801 101 3 1076 1875 302512526 302513324 0.000000 900.0
7 TraesCS5A01G250200 chr7B 86.308 818 109 3 1046 1862 302545711 302546526 0.000000 887.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G250200 chr5A 465546246 465549451 3205 False 5921.00 5921 100.000 1 3206 1 chr5A.!!$F1 3205
1 TraesCS5A01G250200 chr5B 430471127 430474309 3182 False 2460.45 4857 94.589 1 3206 2 chr5B.!!$F1 3205
2 TraesCS5A01G250200 chr5D 364399641 364402800 3159 False 2519.50 4089 94.281 1 3206 2 chr5D.!!$F1 3205
3 TraesCS5A01G250200 chr7D 318251717 318252573 856 True 994.00 994 87.572 1008 1875 1 chr7D.!!$R1 867
4 TraesCS5A01G250200 chr7B 302512526 302513324 798 False 900.00 900 87.016 1076 1875 1 chr7B.!!$F1 799
5 TraesCS5A01G250200 chr7B 302545711 302546526 815 False 887.00 887 86.308 1046 1862 1 chr7B.!!$F2 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 374 0.105090 TGGGTGCGGGTATGGGTATA 60.105 55.0 0.0 0.0 0.00 1.47 F
822 835 0.589708 GGTTTCGGTTTCGTTCCAGG 59.410 55.0 0.0 0.0 37.69 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1912 2.277120 CCGACGCGGTACTTCTCG 60.277 66.667 12.47 8.7 42.73 4.04 R
2447 2467 0.026285 CCGAAAATCAACTAGCGCCG 59.974 55.000 2.29 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
373 374 0.105090 TGGGTGCGGGTATGGGTATA 60.105 55.000 0.00 0.00 0.00 1.47
822 835 0.589708 GGTTTCGGTTTCGTTCCAGG 59.410 55.000 0.00 0.00 37.69 4.45
833 846 0.953960 CGTTCCAGGGGAAACGGAAG 60.954 60.000 0.00 0.00 43.86 3.46
873 888 3.306780 CGAGGATAGAGAGAGGAGAGGTC 60.307 56.522 0.00 0.00 0.00 3.85
879 894 1.208844 AGAGAGGAGAGGTCGGGTGA 61.209 60.000 0.00 0.00 0.00 4.02
909 924 1.513158 CTCCAGATCGAACGGCTGT 59.487 57.895 0.00 0.00 0.00 4.40
1992 2008 1.178276 TCGAGTTCAAGGAGGAGCTC 58.822 55.000 4.71 4.71 40.49 4.09
2188 2204 0.470080 GACCGAGATGGATCCCAGGA 60.470 60.000 9.90 0.00 42.00 3.86
2192 2208 1.202580 CGAGATGGATCCCAGGAACAC 60.203 57.143 9.90 0.00 36.75 3.32
2229 2245 0.107268 TGATGGGTGATCGATGCTGG 59.893 55.000 0.54 0.00 33.17 4.85
2237 2253 4.130118 GGTGATCGATGCTGGAACTAAAT 58.870 43.478 0.54 0.00 0.00 1.40
2254 2270 7.116805 GGAACTAAATTTGCTTCATTTGACCTG 59.883 37.037 0.00 0.00 0.00 4.00
2256 2272 7.147976 ACTAAATTTGCTTCATTTGACCTGTC 58.852 34.615 0.00 0.00 0.00 3.51
2257 2273 5.534207 AATTTGCTTCATTTGACCTGTCA 57.466 34.783 0.00 0.00 37.91 3.58
2258 2274 5.733620 ATTTGCTTCATTTGACCTGTCAT 57.266 34.783 0.03 0.00 39.64 3.06
2259 2275 4.508461 TTGCTTCATTTGACCTGTCATG 57.492 40.909 0.03 0.00 39.64 3.07
2261 2277 3.890756 TGCTTCATTTGACCTGTCATGTT 59.109 39.130 0.03 0.00 39.64 2.71
2262 2278 4.232221 GCTTCATTTGACCTGTCATGTTG 58.768 43.478 0.03 0.44 39.64 3.33
2273 2293 3.381272 CCTGTCATGTTGTTTGTTCAGGT 59.619 43.478 0.00 0.00 35.16 4.00
2283 2303 4.523083 TGTTTGTTCAGGTTCAGCTAGTT 58.477 39.130 0.00 0.00 0.00 2.24
2298 2318 6.049149 TCAGCTAGTTCATACTTGTATTGGC 58.951 40.000 0.00 0.00 35.78 4.52
2325 2345 1.279840 GACGCCTTGTCTGTTGTGC 59.720 57.895 0.00 0.00 44.58 4.57
2326 2346 1.436195 GACGCCTTGTCTGTTGTGCA 61.436 55.000 0.00 0.00 44.58 4.57
2401 2421 4.379499 CGCTCATGTTAGAAACTTTTCCCC 60.379 45.833 0.00 0.00 37.92 4.81
2403 2423 4.076394 TCATGTTAGAAACTTTTCCCCGG 58.924 43.478 0.00 0.00 37.92 5.73
2419 2439 0.468648 CCGGAACCAATACCCTCTCC 59.531 60.000 0.00 0.00 0.00 3.71
2435 2455 3.602677 CCGGCGATTAGGGCTCGA 61.603 66.667 9.30 0.00 38.38 4.04
2436 2456 2.049985 CGGCGATTAGGGCTCGAG 60.050 66.667 8.45 8.45 38.38 4.04
2437 2457 2.846652 CGGCGATTAGGGCTCGAGT 61.847 63.158 15.13 0.00 38.38 4.18
2438 2458 1.300233 GGCGATTAGGGCTCGAGTG 60.300 63.158 15.13 0.00 38.38 3.51
2439 2459 1.300233 GCGATTAGGGCTCGAGTGG 60.300 63.158 15.13 0.00 38.38 4.00
2440 2460 1.735376 GCGATTAGGGCTCGAGTGGA 61.735 60.000 15.13 0.00 38.38 4.02
2441 2461 0.962489 CGATTAGGGCTCGAGTGGAT 59.038 55.000 15.13 1.66 38.38 3.41
2442 2462 2.160205 CGATTAGGGCTCGAGTGGATA 58.840 52.381 15.13 0.00 38.38 2.59
2443 2463 2.755655 CGATTAGGGCTCGAGTGGATAT 59.244 50.000 15.13 2.85 38.38 1.63
2444 2464 3.193691 CGATTAGGGCTCGAGTGGATATT 59.806 47.826 15.13 0.00 38.38 1.28
2445 2465 4.499183 GATTAGGGCTCGAGTGGATATTG 58.501 47.826 15.13 0.00 0.00 1.90
2446 2466 1.051812 AGGGCTCGAGTGGATATTGG 58.948 55.000 15.13 0.00 0.00 3.16
2447 2467 0.603975 GGGCTCGAGTGGATATTGGC 60.604 60.000 15.13 0.00 0.00 4.52
2448 2468 0.946221 GGCTCGAGTGGATATTGGCG 60.946 60.000 15.13 0.00 0.00 5.69
2449 2469 0.946221 GCTCGAGTGGATATTGGCGG 60.946 60.000 15.13 0.00 0.00 6.13
2450 2470 0.946221 CTCGAGTGGATATTGGCGGC 60.946 60.000 3.62 0.00 0.00 6.53
2451 2471 2.310233 CGAGTGGATATTGGCGGCG 61.310 63.158 0.51 0.51 0.00 6.46
2454 2474 1.301401 GTGGATATTGGCGGCGCTA 60.301 57.895 32.30 24.91 0.00 4.26
2461 2481 0.748005 ATTGGCGGCGCTAGTTGATT 60.748 50.000 32.30 4.53 0.00 2.57
2476 2496 3.683587 GATTTTCGGCAGGGCGCAC 62.684 63.158 10.83 5.15 45.17 5.34
2506 2526 2.425592 CGGCGGGAGATGGCAATA 59.574 61.111 0.00 0.00 0.00 1.90
2507 2527 1.669115 CGGCGGGAGATGGCAATAG 60.669 63.158 0.00 0.00 0.00 1.73
2508 2528 1.451936 GGCGGGAGATGGCAATAGT 59.548 57.895 0.00 0.00 0.00 2.12
2513 2533 2.628178 CGGGAGATGGCAATAGTGACTA 59.372 50.000 0.00 0.00 31.93 2.59
2516 2536 5.047306 CGGGAGATGGCAATAGTGACTAATA 60.047 44.000 0.00 0.00 31.93 0.98
2615 2638 0.744874 TATCACGGAGGAAGAAGCGG 59.255 55.000 0.00 0.00 0.00 5.52
2616 2639 1.258445 ATCACGGAGGAAGAAGCGGT 61.258 55.000 0.00 0.00 0.00 5.68
2626 2649 3.022406 GGAAGAAGCGGTTCCTCTAGTA 58.978 50.000 22.91 0.00 40.46 1.82
2627 2650 3.181488 GGAAGAAGCGGTTCCTCTAGTAC 60.181 52.174 22.91 3.86 40.46 2.73
2639 2662 6.127675 GGTTCCTCTAGTACTTGACGATTCTT 60.128 42.308 0.00 0.00 0.00 2.52
2664 2687 0.741915 TGTTCAAAACCGAAGTGGCC 59.258 50.000 0.00 0.00 43.94 5.36
2669 2692 1.535462 CAAAACCGAAGTGGCCACTAG 59.465 52.381 37.89 30.99 43.94 2.57
2676 2699 0.995024 AAGTGGCCACTAGCAGGAAT 59.005 50.000 37.89 17.72 46.50 3.01
2688 2711 6.994496 CCACTAGCAGGAATGATTCTTTATCA 59.006 38.462 5.03 0.00 46.86 2.15
2692 2715 7.093322 AGCAGGAATGATTCTTTATCACAAC 57.907 36.000 5.03 0.00 45.71 3.32
2712 2735 7.328493 TCACAACTTGTTTCATAGTATCAGACG 59.672 37.037 0.00 0.00 0.00 4.18
2746 2769 3.278574 CTTCGTTAGCATGGGGAAATCA 58.721 45.455 0.00 0.00 0.00 2.57
2759 2782 3.308832 GGGGAAATCATTGTGGTCTGGTA 60.309 47.826 0.00 0.00 0.00 3.25
2767 2790 4.020573 TCATTGTGGTCTGGTATTTCGTCT 60.021 41.667 0.00 0.00 0.00 4.18
2768 2791 3.313012 TGTGGTCTGGTATTTCGTCTG 57.687 47.619 0.00 0.00 0.00 3.51
2820 2844 3.135348 TGAATCTCAGCGGGATCAAGATT 59.865 43.478 0.00 0.00 38.91 2.40
2875 2899 3.947910 ACATGCAGTGATTTTGAAGGG 57.052 42.857 0.00 0.00 0.00 3.95
2893 2917 1.612199 GGGGTTTGAGGAATGTACGCA 60.612 52.381 0.00 0.00 0.00 5.24
3021 3045 4.326504 CAACTCCTTTGCAAATTGACCT 57.673 40.909 13.23 0.00 0.00 3.85
3057 3081 1.988107 AGGGTTCATGTCACCACTGAT 59.012 47.619 15.86 0.00 35.80 2.90
3098 3122 2.817258 GGTGGGTTTGTGATTGATTCGA 59.183 45.455 0.00 0.00 0.00 3.71
3145 3170 9.519191 TGGTAGGATATCCAATATGAACAAATG 57.481 33.333 23.81 0.00 38.89 2.32
3146 3171 9.520515 GGTAGGATATCCAATATGAACAAATGT 57.479 33.333 23.81 0.00 38.89 2.71
3173 3198 4.757149 ACTTTTGCTTTTCATCTAGTCGCT 59.243 37.500 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 1.820519 TGCTGGGTTTCATGAATGAGC 59.179 47.619 9.40 13.72 38.19 4.26
373 374 1.161113 ACTCCAACAGCTACCCCCT 59.839 57.895 0.00 0.00 0.00 4.79
521 522 0.546598 CCCCACAATCTCACCCCTAC 59.453 60.000 0.00 0.00 0.00 3.18
822 835 1.032114 CATGCCCTCTTCCGTTTCCC 61.032 60.000 0.00 0.00 0.00 3.97
833 846 2.282745 GCATAGCCCCATGCCCTC 60.283 66.667 4.58 0.00 44.55 4.30
851 864 2.637872 ACCTCTCCTCTCTCTATCCTCG 59.362 54.545 0.00 0.00 0.00 4.63
909 924 0.389817 CACGAACCTTGATGCGAGGA 60.390 55.000 7.70 0.00 37.20 3.71
1140 1155 3.261580 GAGCTTCTTCAGGAGCTTCTTC 58.738 50.000 11.12 0.00 37.79 2.87
1434 1449 2.965147 GCACATGAGCGGCGTGAAA 61.965 57.895 9.37 0.00 36.97 2.69
1896 1912 2.277120 CCGACGCGGTACTTCTCG 60.277 66.667 12.47 8.70 42.73 4.04
1998 2014 2.739704 CTGGTACATGTGCCGCGTG 61.740 63.158 25.41 13.04 38.20 5.34
2188 2204 3.259876 AGCATTCATTCAGCAATGGTGTT 59.740 39.130 12.41 0.00 38.87 3.32
2192 2208 3.793797 TCAGCATTCATTCAGCAATGG 57.206 42.857 0.00 0.00 40.08 3.16
2229 2245 7.653311 ACAGGTCAAATGAAGCAAATTTAGTTC 59.347 33.333 0.00 0.00 0.00 3.01
2237 2253 4.341806 ACATGACAGGTCAAATGAAGCAAA 59.658 37.500 6.17 0.00 43.58 3.68
2254 2270 4.992688 TGAACCTGAACAAACAACATGAC 58.007 39.130 0.00 0.00 0.00 3.06
2256 2272 3.798337 GCTGAACCTGAACAAACAACATG 59.202 43.478 0.00 0.00 0.00 3.21
2257 2273 3.701040 AGCTGAACCTGAACAAACAACAT 59.299 39.130 0.00 0.00 0.00 2.71
2258 2274 3.088532 AGCTGAACCTGAACAAACAACA 58.911 40.909 0.00 0.00 0.00 3.33
2259 2275 3.782889 AGCTGAACCTGAACAAACAAC 57.217 42.857 0.00 0.00 0.00 3.32
2261 2277 4.150897 ACTAGCTGAACCTGAACAAACA 57.849 40.909 0.00 0.00 0.00 2.83
2262 2278 4.574828 TGAACTAGCTGAACCTGAACAAAC 59.425 41.667 0.00 0.00 0.00 2.93
2273 2293 6.538742 GCCAATACAAGTATGAACTAGCTGAA 59.461 38.462 0.00 0.00 33.75 3.02
2283 2303 7.282224 GTCCAATTACAGCCAATACAAGTATGA 59.718 37.037 0.00 0.00 0.00 2.15
2298 2318 2.416547 CAGACAAGGCGTCCAATTACAG 59.583 50.000 0.00 0.00 46.69 2.74
2324 2344 4.804108 AGATCTAGCATATGACTCGTTGC 58.196 43.478 6.97 0.00 35.34 4.17
2325 2345 6.442112 TCAAGATCTAGCATATGACTCGTTG 58.558 40.000 6.97 1.17 0.00 4.10
2326 2346 6.641169 TCAAGATCTAGCATATGACTCGTT 57.359 37.500 6.97 0.00 0.00 3.85
2401 2421 0.104304 CGGAGAGGGTATTGGTTCCG 59.896 60.000 0.00 0.00 41.15 4.30
2403 2423 0.179054 GCCGGAGAGGGTATTGGTTC 60.179 60.000 5.05 0.00 41.48 3.62
2419 2439 2.049985 CTCGAGCCCTAATCGCCG 60.050 66.667 0.00 0.00 39.98 6.46
2435 2455 1.754380 TAGCGCCGCCAATATCCACT 61.754 55.000 4.98 0.00 0.00 4.00
2436 2456 1.291877 CTAGCGCCGCCAATATCCAC 61.292 60.000 4.98 0.00 0.00 4.02
2437 2457 1.005037 CTAGCGCCGCCAATATCCA 60.005 57.895 4.98 0.00 0.00 3.41
2438 2458 0.602905 AACTAGCGCCGCCAATATCC 60.603 55.000 4.98 0.00 0.00 2.59
2439 2459 0.512952 CAACTAGCGCCGCCAATATC 59.487 55.000 4.98 0.00 0.00 1.63
2440 2460 0.105964 TCAACTAGCGCCGCCAATAT 59.894 50.000 4.98 0.00 0.00 1.28
2441 2461 0.105964 ATCAACTAGCGCCGCCAATA 59.894 50.000 4.98 0.00 0.00 1.90
2442 2462 0.748005 AATCAACTAGCGCCGCCAAT 60.748 50.000 4.98 0.00 0.00 3.16
2443 2463 0.958382 AAATCAACTAGCGCCGCCAA 60.958 50.000 4.98 0.00 0.00 4.52
2444 2464 0.958382 AAAATCAACTAGCGCCGCCA 60.958 50.000 4.98 0.00 0.00 5.69
2445 2465 0.248094 GAAAATCAACTAGCGCCGCC 60.248 55.000 4.98 0.00 0.00 6.13
2446 2466 0.586502 CGAAAATCAACTAGCGCCGC 60.587 55.000 2.29 0.00 0.00 6.53
2447 2467 0.026285 CCGAAAATCAACTAGCGCCG 59.974 55.000 2.29 0.00 0.00 6.46
2448 2468 0.248094 GCCGAAAATCAACTAGCGCC 60.248 55.000 2.29 0.00 0.00 6.53
2449 2469 0.446222 TGCCGAAAATCAACTAGCGC 59.554 50.000 0.00 0.00 0.00 5.92
2450 2470 1.062587 CCTGCCGAAAATCAACTAGCG 59.937 52.381 0.00 0.00 0.00 4.26
2451 2471 1.401905 CCCTGCCGAAAATCAACTAGC 59.598 52.381 0.00 0.00 0.00 3.42
2454 2474 1.586154 CGCCCTGCCGAAAATCAACT 61.586 55.000 0.00 0.00 0.00 3.16
2476 2496 2.503809 CGCCGCAACAAAATCCGG 60.504 61.111 0.00 0.00 43.38 5.14
2505 2525 5.422331 ACCTTTCTGCTGCTATTAGTCACTA 59.578 40.000 0.00 0.00 0.00 2.74
2506 2526 4.223923 ACCTTTCTGCTGCTATTAGTCACT 59.776 41.667 0.00 0.00 0.00 3.41
2507 2527 4.331168 CACCTTTCTGCTGCTATTAGTCAC 59.669 45.833 0.00 0.00 0.00 3.67
2508 2528 4.222810 TCACCTTTCTGCTGCTATTAGTCA 59.777 41.667 0.00 0.00 0.00 3.41
2513 2533 2.744202 CGTTCACCTTTCTGCTGCTATT 59.256 45.455 0.00 0.00 0.00 1.73
2516 2536 1.510480 GCGTTCACCTTTCTGCTGCT 61.510 55.000 0.00 0.00 0.00 4.24
2543 2563 2.749044 AACCGAGCCGAGCGACTA 60.749 61.111 0.00 0.00 0.00 2.59
2552 2572 2.267681 ATCTGACGACGAACCGAGCC 62.268 60.000 0.00 0.00 0.00 4.70
2563 2586 0.614697 TGGCTTCCTCCATCTGACGA 60.615 55.000 0.00 0.00 0.00 4.20
2584 2607 4.224147 TCCTCCGTGATATCAAGTTTTCCA 59.776 41.667 16.05 0.00 0.00 3.53
2615 2638 6.439675 AGAATCGTCAAGTACTAGAGGAAC 57.560 41.667 0.00 0.00 33.09 3.62
2616 2639 7.463961 AAAGAATCGTCAAGTACTAGAGGAA 57.536 36.000 0.00 0.00 33.09 3.36
2626 2649 5.584649 TGAACACTCAAAAGAATCGTCAAGT 59.415 36.000 0.00 0.00 0.00 3.16
2627 2650 6.048073 TGAACACTCAAAAGAATCGTCAAG 57.952 37.500 0.00 0.00 0.00 3.02
2639 2662 7.834449 GCCACTTCGGTTTTGAACACTCAAA 62.834 44.000 0.00 0.00 42.06 2.69
2664 2687 7.496920 TGTGATAAAGAATCATTCCTGCTAGTG 59.503 37.037 0.00 0.00 46.21 2.74
2669 2692 7.093322 AGTTGTGATAAAGAATCATTCCTGC 57.907 36.000 0.00 0.00 46.21 4.85
2688 2711 7.375834 TCGTCTGATACTATGAAACAAGTTGT 58.624 34.615 1.64 1.64 0.00 3.32
2703 2726 3.242804 GGGCGCTAGATATCGTCTGATAC 60.243 52.174 7.64 0.00 39.81 2.24
2704 2727 2.943690 GGGCGCTAGATATCGTCTGATA 59.056 50.000 7.64 0.00 41.19 2.15
2705 2728 1.746220 GGGCGCTAGATATCGTCTGAT 59.254 52.381 7.64 0.00 37.83 2.90
2712 2735 2.726832 AACGAAGGGCGCTAGATATC 57.273 50.000 7.64 0.00 46.04 1.63
2746 2769 4.253685 CAGACGAAATACCAGACCACAAT 58.746 43.478 0.00 0.00 0.00 2.71
2759 2782 3.244215 TGTTCTCCTCAAGCAGACGAAAT 60.244 43.478 0.00 0.00 0.00 2.17
2767 2790 5.674525 CCTATAACATGTTCTCCTCAAGCA 58.325 41.667 15.85 0.00 0.00 3.91
2768 2791 4.513318 GCCTATAACATGTTCTCCTCAAGC 59.487 45.833 15.85 5.12 0.00 4.01
2820 2844 0.615331 GATGAGCCTTCCCAGACACA 59.385 55.000 0.00 0.00 0.00 3.72
2875 2899 1.130561 GCTGCGTACATTCCTCAAACC 59.869 52.381 0.00 0.00 0.00 3.27
2893 2917 2.185310 AAAAGCGAGTCCCGATGGCT 62.185 55.000 0.00 0.00 41.76 4.75
2963 2987 3.711863 ACACCAAGCCCATGTATCATTT 58.288 40.909 0.00 0.00 0.00 2.32
3021 3045 2.424793 ACCCTTAGAAAACCTCCCACA 58.575 47.619 0.00 0.00 0.00 4.17
3098 3122 5.256474 CCAATCACTATGGTTCCTTCTTGT 58.744 41.667 0.00 0.00 33.08 3.16
3145 3170 7.195839 ACTAGATGAAAAGCAAAAGTGAGAC 57.804 36.000 0.00 0.00 0.00 3.36
3146 3171 6.146184 CGACTAGATGAAAAGCAAAAGTGAGA 59.854 38.462 0.00 0.00 0.00 3.27
3173 3198 3.987745 AGAGAAGATCTGAGTGGCCTAA 58.012 45.455 3.32 0.00 36.69 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.