Multiple sequence alignment - TraesCS5A01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G249800 chr5A 100.000 1468 0 0 873 2340 464500907 464499440 0.000000e+00 2712.0
1 TraesCS5A01G249800 chr5A 100.000 734 0 0 1 734 464501779 464501046 0.000000e+00 1356.0
2 TraesCS5A01G249800 chr5A 92.073 492 30 2 873 1364 661244544 661244062 0.000000e+00 684.0
3 TraesCS5A01G249800 chr5A 82.594 293 37 10 1358 1639 464482096 464481807 1.800000e-61 246.0
4 TraesCS5A01G249800 chr5A 77.381 252 26 17 1760 2007 464479963 464479739 1.140000e-23 121.0
5 TraesCS5A01G249800 chr1B 96.726 733 22 2 1 733 92336517 92337247 0.000000e+00 1219.0
6 TraesCS5A01G249800 chr1B 92.073 492 28 4 873 1364 220750761 220750281 0.000000e+00 682.0
7 TraesCS5A01G249800 chr2B 96.453 733 25 1 1 733 390803407 390802676 0.000000e+00 1208.0
8 TraesCS5A01G249800 chr2B 92.713 494 27 2 873 1366 793363845 793364329 0.000000e+00 704.0
9 TraesCS5A01G249800 chr2B 91.935 496 30 3 873 1367 484949368 484949854 0.000000e+00 686.0
10 TraesCS5A01G249800 chr1A 96.322 734 25 2 1 734 213935794 213936525 0.000000e+00 1205.0
11 TraesCS5A01G249800 chr1A 91.075 493 34 3 873 1365 558803261 558803743 0.000000e+00 658.0
12 TraesCS5A01G249800 chr3B 96.317 733 26 1 1 733 772414711 772413980 0.000000e+00 1203.0
13 TraesCS5A01G249800 chr3B 95.907 733 29 1 1 733 161678725 161677994 0.000000e+00 1186.0
14 TraesCS5A01G249800 chr3B 91.903 494 30 3 873 1366 727123209 727122726 0.000000e+00 682.0
15 TraesCS5A01G249800 chr4B 96.049 734 28 1 1 734 613148971 613149703 0.000000e+00 1194.0
16 TraesCS5A01G249800 chr4B 95.907 733 28 2 1 733 544605711 544606441 0.000000e+00 1186.0
17 TraesCS5A01G249800 chr4B 92.089 493 30 2 873 1365 613149731 613150214 0.000000e+00 686.0
18 TraesCS5A01G249800 chr4B 91.903 494 30 3 873 1365 22439155 22439639 0.000000e+00 682.0
19 TraesCS5A01G249800 chr4B 91.903 494 30 3 873 1365 166833389 166832905 0.000000e+00 682.0
20 TraesCS5A01G249800 chr5B 96.044 733 28 1 1 733 59780839 59780108 0.000000e+00 1192.0
21 TraesCS5A01G249800 chr5B 96.044 733 28 1 1 733 677677529 677678260 0.000000e+00 1192.0
22 TraesCS5A01G249800 chr5B 87.874 602 37 13 1445 2018 429778584 429777991 0.000000e+00 675.0
23 TraesCS5A01G249800 chr5B 91.498 494 32 6 873 1365 547492333 547491849 0.000000e+00 671.0
24 TraesCS5A01G249800 chr5B 86.605 433 24 16 1447 1845 429897723 429897291 4.590000e-122 448.0
25 TraesCS5A01G249800 chr5B 82.258 496 59 20 1365 1842 429623655 429623171 3.620000e-108 401.0
26 TraesCS5A01G249800 chr5B 79.550 533 61 29 1367 1864 429746517 429745998 1.040000e-88 337.0
27 TraesCS5A01G249800 chr5B 86.290 248 26 5 1390 1630 429828086 429827840 1.780000e-66 263.0
28 TraesCS5A01G249800 chr5B 92.754 69 2 1 2272 2340 429777989 429777924 1.910000e-16 97.1
29 TraesCS5A01G249800 chr4A 92.480 492 29 2 873 1364 683420618 683421101 0.000000e+00 697.0
30 TraesCS5A01G249800 chr6B 92.480 492 28 2 873 1364 257595252 257595734 0.000000e+00 695.0
31 TraesCS5A01G249800 chr6B 90.283 494 39 2 873 1366 54791049 54790565 2.540000e-179 638.0
32 TraesCS5A01G249800 chr6A 92.276 492 28 3 873 1364 177026525 177026044 0.000000e+00 689.0
33 TraesCS5A01G249800 chr7A 91.853 491 30 3 873 1363 11072719 11073199 0.000000e+00 676.0
34 TraesCS5A01G249800 chr7A 91.650 491 31 3 873 1363 11082315 11082795 0.000000e+00 671.0
35 TraesCS5A01G249800 chr4D 91.446 491 33 2 873 1363 469444951 469444470 0.000000e+00 665.0
36 TraesCS5A01G249800 chr5D 90.447 492 38 2 873 1364 383586859 383587341 7.050000e-180 640.0
37 TraesCS5A01G249800 chr5D 85.901 383 19 10 1667 2023 363224954 363224581 2.200000e-100 375.0
38 TraesCS5A01G249800 chr5D 80.451 532 61 27 1365 1864 363001277 363000757 1.320000e-97 366.0
39 TraesCS5A01G249800 chr5D 79.245 530 67 29 1365 1864 363188985 363188469 1.730000e-86 329.0
40 TraesCS5A01G249800 chr5D 92.857 182 12 1 1445 1625 363228083 363227902 1.780000e-66 263.0
41 TraesCS5A01G249800 chr5D 88.889 207 9 5 1448 1640 363024892 363024686 2.320000e-60 243.0
42 TraesCS5A01G249800 chr5D 79.008 262 46 5 2022 2274 61634583 61634322 1.110000e-38 171.0
43 TraesCS5A01G249800 chr5D 92.308 65 1 2 2276 2340 363224580 363224520 3.200000e-14 89.8
44 TraesCS5A01G249800 chr1D 79.771 262 44 4 2022 2274 423732060 423732321 5.140000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G249800 chr5A 464499440 464501779 2339 True 2034.00 2712 100.000000 1 2340 2 chr5A.!!$R3 2339
1 TraesCS5A01G249800 chr1B 92336517 92337247 730 False 1219.00 1219 96.726000 1 733 1 chr1B.!!$F1 732
2 TraesCS5A01G249800 chr2B 390802676 390803407 731 True 1208.00 1208 96.453000 1 733 1 chr2B.!!$R1 732
3 TraesCS5A01G249800 chr1A 213935794 213936525 731 False 1205.00 1205 96.322000 1 734 1 chr1A.!!$F1 733
4 TraesCS5A01G249800 chr3B 772413980 772414711 731 True 1203.00 1203 96.317000 1 733 1 chr3B.!!$R3 732
5 TraesCS5A01G249800 chr3B 161677994 161678725 731 True 1186.00 1186 95.907000 1 733 1 chr3B.!!$R1 732
6 TraesCS5A01G249800 chr4B 544605711 544606441 730 False 1186.00 1186 95.907000 1 733 1 chr4B.!!$F2 732
7 TraesCS5A01G249800 chr4B 613148971 613150214 1243 False 940.00 1194 94.069000 1 1365 2 chr4B.!!$F3 1364
8 TraesCS5A01G249800 chr5B 59780108 59780839 731 True 1192.00 1192 96.044000 1 733 1 chr5B.!!$R1 732
9 TraesCS5A01G249800 chr5B 677677529 677678260 731 False 1192.00 1192 96.044000 1 733 1 chr5B.!!$F1 732
10 TraesCS5A01G249800 chr5B 429777924 429778584 660 True 386.05 675 90.314000 1445 2340 2 chr5B.!!$R7 895
11 TraesCS5A01G249800 chr5B 429745998 429746517 519 True 337.00 337 79.550000 1367 1864 1 chr5B.!!$R3 497
12 TraesCS5A01G249800 chr5D 363000757 363001277 520 True 366.00 366 80.451000 1365 1864 1 chr5D.!!$R2 499
13 TraesCS5A01G249800 chr5D 363188469 363188985 516 True 329.00 329 79.245000 1365 1864 1 chr5D.!!$R4 499
14 TraesCS5A01G249800 chr5D 363224520 363228083 3563 True 242.60 375 90.355333 1445 2340 3 chr5D.!!$R5 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 919 0.111253 CTCAGGGGTATGATTGGGGC 59.889 60.0 0.0 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 5229 0.032952 TCCCTCCGTTCGTGAACAAG 59.967 55.0 12.76 8.79 41.2 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.779489 TGGGATGAAGATCTTCTCAGACAA 59.221 41.667 30.45 13.24 40.14 3.18
128 129 6.205784 TCGTAGCTTGGAATTTCACAAAAAG 58.794 36.000 0.00 0.00 0.00 2.27
171 172 3.768757 TCTGCTTATTTTGTGGAATGGGG 59.231 43.478 0.00 0.00 0.00 4.96
274 275 3.477530 ACTTACTTGTCCAGCAAAGGTC 58.522 45.455 0.00 0.00 36.53 3.85
289 290 9.434420 CCAGCAAAGGTCAAAATATTTATTTGA 57.566 29.630 17.68 10.19 42.73 2.69
335 336 5.796935 TCGTGTCGTGTTAACTTAGCTAATC 59.203 40.000 6.64 0.00 0.00 1.75
357 358 3.735208 CGACATGTGAAAGTCTCGCCTAT 60.735 47.826 1.15 0.00 33.24 2.57
440 441 4.640364 AGCAAAAGAAGTCTGGAGAAGAG 58.360 43.478 0.00 0.00 34.84 2.85
445 446 4.938575 AGAAGTCTGGAGAAGAGTAGGA 57.061 45.455 0.00 0.00 37.61 2.94
557 558 8.357290 ACTATGTATTATGGGCACTCGTAATA 57.643 34.615 0.00 0.00 32.80 0.98
583 584 3.819337 GTGACATGATTGCCATATCAGCT 59.181 43.478 0.00 0.00 39.18 4.24
656 657 5.529800 CAGAATGCACAACAGATATCCATGA 59.470 40.000 0.00 0.00 0.00 3.07
699 700 2.489938 TTTGTTAATGCCTCCTCGCT 57.510 45.000 0.00 0.00 0.00 4.93
894 895 2.844946 TGATGCTTCTTTTGACCACGA 58.155 42.857 0.88 0.00 0.00 4.35
909 910 1.486211 CACGACCTTCTCAGGGGTAT 58.514 55.000 0.00 0.00 46.01 2.73
913 914 2.700897 CGACCTTCTCAGGGGTATGATT 59.299 50.000 0.00 0.00 46.01 2.57
915 916 2.780010 ACCTTCTCAGGGGTATGATTGG 59.220 50.000 0.00 0.00 46.01 3.16
918 919 0.111253 CTCAGGGGTATGATTGGGGC 59.889 60.000 0.00 0.00 0.00 5.80
962 963 1.213430 GGTTCATCGGTGGGGGAAATA 59.787 52.381 0.00 0.00 0.00 1.40
973 974 5.131067 GGTGGGGGAAATAGTAAGATTGAC 58.869 45.833 0.00 0.00 0.00 3.18
974 975 5.104067 GGTGGGGGAAATAGTAAGATTGACT 60.104 44.000 0.00 0.00 0.00 3.41
975 976 5.823045 GTGGGGGAAATAGTAAGATTGACTG 59.177 44.000 0.00 0.00 0.00 3.51
976 977 5.104109 TGGGGGAAATAGTAAGATTGACTGG 60.104 44.000 0.00 0.00 0.00 4.00
977 978 5.104067 GGGGGAAATAGTAAGATTGACTGGT 60.104 44.000 0.00 0.00 0.00 4.00
978 979 5.823045 GGGGAAATAGTAAGATTGACTGGTG 59.177 44.000 0.00 0.00 0.00 4.17
979 980 6.415573 GGGAAATAGTAAGATTGACTGGTGT 58.584 40.000 0.00 0.00 0.00 4.16
980 981 6.316390 GGGAAATAGTAAGATTGACTGGTGTG 59.684 42.308 0.00 0.00 0.00 3.82
1010 1011 3.079578 CAGATGTGTTGATGGCTGAAGT 58.920 45.455 0.00 0.00 0.00 3.01
1041 1042 3.405170 AAATTTGGTCTATCGCTTGCG 57.595 42.857 8.87 8.87 0.00 4.85
1046 1047 0.446222 GGTCTATCGCTTGCGCAAAA 59.554 50.000 25.01 12.89 35.30 2.44
1062 1063 2.224784 GCAAAAGACGGGTTGTAATCGT 59.775 45.455 0.00 0.00 39.99 3.73
1108 1109 3.304257 GAGATGATCGAGACCATGAACG 58.696 50.000 0.00 0.00 0.00 3.95
1122 1123 1.541379 TGAACGAAGGAGGACGATCA 58.459 50.000 0.00 0.00 38.52 2.92
1124 1125 2.496070 TGAACGAAGGAGGACGATCATT 59.504 45.455 0.00 0.00 36.67 2.57
1125 1126 2.586258 ACGAAGGAGGACGATCATTG 57.414 50.000 0.00 0.00 0.00 2.82
1178 1179 7.544217 ACTGTTTTCACTTAGTTTGCGATTTTT 59.456 29.630 0.00 0.00 0.00 1.94
1185 1186 9.959749 TCACTTAGTTTGCGATTTTTCTATTTT 57.040 25.926 0.00 0.00 0.00 1.82
1196 1197 9.704098 GCGATTTTTCTATTTTTAGATTCGAGT 57.296 29.630 0.00 0.00 0.00 4.18
1312 1313 7.658525 TGCAATTGTACCAATCCTCATAAAT 57.341 32.000 7.40 0.00 0.00 1.40
1396 1397 3.350219 ACCATAGTAGGTGCCAACAAG 57.650 47.619 0.00 0.00 41.30 3.16
1428 1429 1.061570 GAGTCGTACTACCACGCGG 59.938 63.158 12.47 0.00 41.67 6.46
1431 1432 2.108514 TCGTACTACCACGCGGAGG 61.109 63.158 12.47 15.17 41.67 4.30
1432 1433 2.108514 CGTACTACCACGCGGAGGA 61.109 63.158 24.06 4.58 34.78 3.71
1434 1435 0.743097 GTACTACCACGCGGAGGAAT 59.257 55.000 24.06 12.05 35.59 3.01
1436 1437 1.700955 ACTACCACGCGGAGGAATAT 58.299 50.000 24.06 6.43 35.59 1.28
1437 1438 2.037144 ACTACCACGCGGAGGAATATT 58.963 47.619 24.06 6.08 35.59 1.28
1440 1441 3.764237 ACCACGCGGAGGAATATTAAT 57.236 42.857 24.06 0.00 35.59 1.40
1441 1442 4.081322 ACCACGCGGAGGAATATTAATT 57.919 40.909 24.06 0.00 35.59 1.40
1443 1444 4.885325 ACCACGCGGAGGAATATTAATTTT 59.115 37.500 24.06 0.00 35.59 1.82
1484 1485 2.983907 TGGACTTGTGTACCGTTTCA 57.016 45.000 0.00 0.00 0.00 2.69
1646 1955 2.098770 CCTAACCACTACTCTACGTGCC 59.901 54.545 0.00 0.00 0.00 5.01
1664 4585 0.179145 CCTGTCTACGGCCGTTGTAG 60.179 60.000 38.94 30.58 40.51 2.74
1745 4682 7.222224 GGCAATAAAAATGAAGCATCAGAGAAG 59.778 37.037 0.00 0.00 39.39 2.85
1746 4683 7.972277 GCAATAAAAATGAAGCATCAGAGAAGA 59.028 33.333 0.00 0.00 39.39 2.87
1747 4684 9.504710 CAATAAAAATGAAGCATCAGAGAAGAG 57.495 33.333 0.00 0.00 39.39 2.85
1748 4685 8.804912 ATAAAAATGAAGCATCAGAGAAGAGT 57.195 30.769 0.00 0.00 39.39 3.24
1749 4686 9.896645 ATAAAAATGAAGCATCAGAGAAGAGTA 57.103 29.630 0.00 0.00 39.39 2.59
1750 4687 8.804912 AAAAATGAAGCATCAGAGAAGAGTAT 57.195 30.769 0.00 0.00 39.39 2.12
1751 4688 8.804912 AAAATGAAGCATCAGAGAAGAGTATT 57.195 30.769 0.00 0.00 39.39 1.89
1752 4689 8.804912 AAATGAAGCATCAGAGAAGAGTATTT 57.195 30.769 0.00 0.00 39.39 1.40
1753 4690 8.804912 AATGAAGCATCAGAGAAGAGTATTTT 57.195 30.769 0.00 0.00 39.39 1.82
1754 4691 7.840342 TGAAGCATCAGAGAAGAGTATTTTC 57.160 36.000 0.00 0.00 0.00 2.29
1755 4692 6.820656 TGAAGCATCAGAGAAGAGTATTTTCC 59.179 38.462 0.00 0.00 0.00 3.13
1756 4693 5.679601 AGCATCAGAGAAGAGTATTTTCCC 58.320 41.667 0.00 0.00 0.00 3.97
1757 4694 4.819088 GCATCAGAGAAGAGTATTTTCCCC 59.181 45.833 0.00 0.00 0.00 4.81
1758 4695 5.630069 GCATCAGAGAAGAGTATTTTCCCCA 60.630 44.000 0.00 0.00 0.00 4.96
1759 4696 6.418101 CATCAGAGAAGAGTATTTTCCCCAA 58.582 40.000 0.00 0.00 0.00 4.12
1760 4697 6.054860 TCAGAGAAGAGTATTTTCCCCAAG 57.945 41.667 0.00 0.00 0.00 3.61
1765 4739 7.017651 AGAGAAGAGTATTTTCCCCAAGAAGAA 59.982 37.037 0.00 0.00 35.40 2.52
1787 4761 6.811170 AGAAAAGAAGCTGAATTCGAGTCTAG 59.189 38.462 0.04 0.00 34.27 2.43
1826 4800 2.225491 CCACGTGTGGGTTTTACATCTG 59.775 50.000 15.65 0.00 46.81 2.90
1903 4878 3.680786 CGGTCTCCACACGCTCCA 61.681 66.667 0.00 0.00 0.00 3.86
1904 4879 2.982130 GGTCTCCACACGCTCCAT 59.018 61.111 0.00 0.00 0.00 3.41
1905 4880 1.153549 GGTCTCCACACGCTCCATC 60.154 63.158 0.00 0.00 0.00 3.51
1906 4881 1.517257 GTCTCCACACGCTCCATCG 60.517 63.158 0.00 0.00 0.00 3.84
1979 4956 3.351740 TCTTTTGACAACCAGAACTGCA 58.648 40.909 0.00 0.00 0.00 4.41
2023 5000 6.434018 ACCAGTATTTCACTAGACGACTAC 57.566 41.667 0.00 0.00 34.98 2.73
2024 5001 6.179040 ACCAGTATTTCACTAGACGACTACT 58.821 40.000 0.00 0.54 34.98 2.57
2025 5002 6.315891 ACCAGTATTTCACTAGACGACTACTC 59.684 42.308 0.00 0.00 34.98 2.59
2026 5003 6.238429 CCAGTATTTCACTAGACGACTACTCC 60.238 46.154 0.00 0.00 34.98 3.85
2027 5004 5.821995 AGTATTTCACTAGACGACTACTCCC 59.178 44.000 0.00 0.00 34.98 4.30
2028 5005 3.996921 TTCACTAGACGACTACTCCCT 57.003 47.619 0.00 0.00 0.00 4.20
2029 5006 3.540314 TCACTAGACGACTACTCCCTC 57.460 52.381 0.00 0.00 0.00 4.30
2030 5007 2.170187 TCACTAGACGACTACTCCCTCC 59.830 54.545 0.00 0.00 0.00 4.30
2031 5008 2.093075 CACTAGACGACTACTCCCTCCA 60.093 54.545 0.00 0.00 0.00 3.86
2032 5009 2.778850 ACTAGACGACTACTCCCTCCAT 59.221 50.000 0.00 0.00 0.00 3.41
2033 5010 2.351706 AGACGACTACTCCCTCCATC 57.648 55.000 0.00 0.00 0.00 3.51
2034 5011 1.133730 AGACGACTACTCCCTCCATCC 60.134 57.143 0.00 0.00 0.00 3.51
2035 5012 0.465824 ACGACTACTCCCTCCATCCG 60.466 60.000 0.00 0.00 0.00 4.18
2036 5013 1.797211 CGACTACTCCCTCCATCCGC 61.797 65.000 0.00 0.00 0.00 5.54
2037 5014 0.755698 GACTACTCCCTCCATCCGCA 60.756 60.000 0.00 0.00 0.00 5.69
2038 5015 0.325296 ACTACTCCCTCCATCCGCAA 60.325 55.000 0.00 0.00 0.00 4.85
2039 5016 0.830648 CTACTCCCTCCATCCGCAAA 59.169 55.000 0.00 0.00 0.00 3.68
2040 5017 1.417890 CTACTCCCTCCATCCGCAAAT 59.582 52.381 0.00 0.00 0.00 2.32
2041 5018 1.507140 ACTCCCTCCATCCGCAAATA 58.493 50.000 0.00 0.00 0.00 1.40
2042 5019 1.843851 ACTCCCTCCATCCGCAAATAA 59.156 47.619 0.00 0.00 0.00 1.40
2043 5020 2.241176 ACTCCCTCCATCCGCAAATAAA 59.759 45.455 0.00 0.00 0.00 1.40
2044 5021 3.117512 ACTCCCTCCATCCGCAAATAAAT 60.118 43.478 0.00 0.00 0.00 1.40
2045 5022 3.221771 TCCCTCCATCCGCAAATAAATG 58.778 45.455 0.00 0.00 0.00 2.32
2046 5023 2.958355 CCCTCCATCCGCAAATAAATGT 59.042 45.455 0.00 0.00 0.00 2.71
2047 5024 4.141287 CCCTCCATCCGCAAATAAATGTA 58.859 43.478 0.00 0.00 0.00 2.29
2048 5025 4.023193 CCCTCCATCCGCAAATAAATGTAC 60.023 45.833 0.00 0.00 0.00 2.90
2049 5026 4.319477 CCTCCATCCGCAAATAAATGTACG 60.319 45.833 0.00 0.00 0.00 3.67
2050 5027 4.193090 TCCATCCGCAAATAAATGTACGT 58.807 39.130 0.00 0.00 0.00 3.57
2051 5028 4.271533 TCCATCCGCAAATAAATGTACGTC 59.728 41.667 0.00 0.00 0.00 4.34
2052 5029 4.272504 CCATCCGCAAATAAATGTACGTCT 59.727 41.667 0.00 0.00 0.00 4.18
2053 5030 5.464057 CCATCCGCAAATAAATGTACGTCTA 59.536 40.000 0.00 0.00 0.00 2.59
2054 5031 5.954434 TCCGCAAATAAATGTACGTCTAC 57.046 39.130 0.00 0.00 0.00 2.59
2055 5032 4.805192 TCCGCAAATAAATGTACGTCTACC 59.195 41.667 0.00 0.00 0.00 3.18
2056 5033 4.807304 CCGCAAATAAATGTACGTCTACCT 59.193 41.667 0.00 0.00 0.00 3.08
2057 5034 5.292589 CCGCAAATAAATGTACGTCTACCTT 59.707 40.000 0.00 0.00 0.00 3.50
2058 5035 6.183360 CCGCAAATAAATGTACGTCTACCTTT 60.183 38.462 0.00 0.00 0.00 3.11
2059 5036 7.238571 CGCAAATAAATGTACGTCTACCTTTT 58.761 34.615 0.00 0.00 0.00 2.27
2060 5037 7.215568 CGCAAATAAATGTACGTCTACCTTTTG 59.784 37.037 0.00 0.00 0.00 2.44
2061 5038 8.019094 GCAAATAAATGTACGTCTACCTTTTGT 58.981 33.333 0.00 0.00 0.00 2.83
2062 5039 9.887406 CAAATAAATGTACGTCTACCTTTTGTT 57.113 29.630 0.00 0.00 0.00 2.83
2064 5041 8.836268 ATAAATGTACGTCTACCTTTTGTTCA 57.164 30.769 0.00 0.00 0.00 3.18
2065 5042 7.556733 AAATGTACGTCTACCTTTTGTTCAA 57.443 32.000 0.00 0.00 0.00 2.69
2066 5043 7.556733 AATGTACGTCTACCTTTTGTTCAAA 57.443 32.000 0.00 0.00 0.00 2.69
2067 5044 6.592798 TGTACGTCTACCTTTTGTTCAAAG 57.407 37.500 0.00 0.00 41.64 2.77
2068 5045 6.108015 TGTACGTCTACCTTTTGTTCAAAGT 58.892 36.000 0.00 0.00 40.51 2.66
2069 5046 6.594937 TGTACGTCTACCTTTTGTTCAAAGTT 59.405 34.615 0.00 0.00 40.51 2.66
2070 5047 7.763528 TGTACGTCTACCTTTTGTTCAAAGTTA 59.236 33.333 0.00 0.00 40.51 2.24
2071 5048 7.614124 ACGTCTACCTTTTGTTCAAAGTTAA 57.386 32.000 0.00 0.00 40.51 2.01
2072 5049 8.042944 ACGTCTACCTTTTGTTCAAAGTTAAA 57.957 30.769 0.00 0.00 40.51 1.52
2073 5050 8.179615 ACGTCTACCTTTTGTTCAAAGTTAAAG 58.820 33.333 0.00 0.00 40.51 1.85
2074 5051 8.179615 CGTCTACCTTTTGTTCAAAGTTAAAGT 58.820 33.333 0.00 0.00 40.51 2.66
2075 5052 9.850628 GTCTACCTTTTGTTCAAAGTTAAAGTT 57.149 29.630 0.00 0.00 40.51 2.66
2123 5100 9.717942 AAAAAGTAACAGCATTTATGGCATTAA 57.282 25.926 4.78 2.61 0.00 1.40
2124 5101 9.717942 AAAAGTAACAGCATTTATGGCATTAAA 57.282 25.926 4.78 5.01 0.00 1.52
2125 5102 9.889128 AAAGTAACAGCATTTATGGCATTAAAT 57.111 25.926 4.78 7.14 33.16 1.40
2126 5103 9.889128 AAGTAACAGCATTTATGGCATTAAATT 57.111 25.926 4.78 0.00 31.08 1.82
2129 5106 7.951530 ACAGCATTTATGGCATTAAATTAGC 57.048 32.000 4.78 9.97 31.08 3.09
2130 5107 7.499292 ACAGCATTTATGGCATTAAATTAGCA 58.501 30.769 4.78 0.00 31.08 3.49
2131 5108 8.152246 ACAGCATTTATGGCATTAAATTAGCAT 58.848 29.630 4.78 2.03 31.08 3.79
2132 5109 8.653338 CAGCATTTATGGCATTAAATTAGCATC 58.347 33.333 4.78 0.00 31.08 3.91
2133 5110 8.369424 AGCATTTATGGCATTAAATTAGCATCA 58.631 29.630 4.78 0.00 31.08 3.07
2134 5111 8.437742 GCATTTATGGCATTAAATTAGCATCAC 58.562 33.333 4.78 0.00 31.08 3.06
2135 5112 9.701098 CATTTATGGCATTAAATTAGCATCACT 57.299 29.630 4.78 0.00 31.08 3.41
2138 5115 9.791801 TTATGGCATTAAATTAGCATCACTAGA 57.208 29.630 4.78 0.00 30.79 2.43
2139 5116 8.874744 ATGGCATTAAATTAGCATCACTAGAT 57.125 30.769 0.00 0.00 33.87 1.98
2140 5117 8.696043 TGGCATTAAATTAGCATCACTAGATT 57.304 30.769 0.00 0.00 30.20 2.40
2141 5118 8.786898 TGGCATTAAATTAGCATCACTAGATTC 58.213 33.333 0.00 0.00 30.20 2.52
2142 5119 7.959651 GGCATTAAATTAGCATCACTAGATTCG 59.040 37.037 0.00 0.00 30.20 3.34
2143 5120 8.499162 GCATTAAATTAGCATCACTAGATTCGT 58.501 33.333 0.00 0.00 30.20 3.85
2153 5130 8.730680 AGCATCACTAGATTCGTTTTTAAATGT 58.269 29.630 0.00 0.00 30.20 2.71
2154 5131 9.341899 GCATCACTAGATTCGTTTTTAAATGTT 57.658 29.630 0.00 0.00 30.20 2.71
2264 5241 9.659830 AAGATAAAAATACACTTGTTCACGAAC 57.340 29.630 2.89 2.89 41.50 3.95
2265 5242 8.007716 AGATAAAAATACACTTGTTCACGAACG 58.992 33.333 5.51 0.00 43.94 3.95
2266 5243 4.461992 AAATACACTTGTTCACGAACGG 57.538 40.909 5.51 3.86 43.94 4.44
2267 5244 2.867287 TACACTTGTTCACGAACGGA 57.133 45.000 5.51 0.00 43.94 4.69
2268 5245 1.567504 ACACTTGTTCACGAACGGAG 58.432 50.000 5.51 8.11 43.94 4.63
2269 5246 0.859232 CACTTGTTCACGAACGGAGG 59.141 55.000 14.02 4.75 43.94 4.30
2270 5247 0.249741 ACTTGTTCACGAACGGAGGG 60.250 55.000 14.02 3.45 43.94 4.30
2271 5248 0.032952 CTTGTTCACGAACGGAGGGA 59.967 55.000 5.51 0.00 43.94 4.20
2272 5249 0.032952 TTGTTCACGAACGGAGGGAG 59.967 55.000 5.51 0.00 43.94 4.30
2273 5250 1.111116 TGTTCACGAACGGAGGGAGT 61.111 55.000 5.51 0.00 43.94 3.85
2274 5251 0.666577 GTTCACGAACGGAGGGAGTG 60.667 60.000 0.00 0.00 0.00 3.51
2275 5252 1.812686 TTCACGAACGGAGGGAGTGG 61.813 60.000 0.00 0.00 33.98 4.00
2276 5253 3.692406 ACGAACGGAGGGAGTGGC 61.692 66.667 0.00 0.00 0.00 5.01
2277 5254 3.382832 CGAACGGAGGGAGTGGCT 61.383 66.667 0.00 0.00 0.00 4.75
2278 5255 2.050350 CGAACGGAGGGAGTGGCTA 61.050 63.158 0.00 0.00 0.00 3.93
2279 5256 1.817209 GAACGGAGGGAGTGGCTAG 59.183 63.158 0.00 0.00 0.00 3.42
2280 5257 1.677637 GAACGGAGGGAGTGGCTAGG 61.678 65.000 0.00 0.00 0.00 3.02
2323 5300 2.543861 CGGTAGCGCAGACTGTTATCAT 60.544 50.000 11.47 0.00 0.00 2.45
2324 5301 3.053455 GGTAGCGCAGACTGTTATCATC 58.947 50.000 11.47 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.252599 TGAACATCAATAGGCCATAGAGTT 57.747 37.500 5.01 0.06 0.00 3.01
171 172 4.535526 AACTTGTTCCCATATTTGTGGC 57.464 40.909 0.00 0.00 37.96 5.01
176 177 7.281549 GGTATGTCGTAACTTGTTCCCATATTT 59.718 37.037 0.00 0.00 0.00 1.40
289 290 0.953727 TAGTGCCGTGAAGTGTACGT 59.046 50.000 0.00 0.00 39.76 3.57
335 336 0.716108 GGCGAGACTTTCACATGTCG 59.284 55.000 0.00 0.00 38.16 4.35
357 358 1.196766 AGATGAGCAGGCAGGACACA 61.197 55.000 0.00 0.00 0.00 3.72
463 464 7.145985 CCGCATAGTCTATTTTACAAGCTCTA 58.854 38.462 0.00 0.00 0.00 2.43
557 558 1.395635 ATGGCAATCATGTCACGCAT 58.604 45.000 0.00 0.00 45.49 4.73
583 584 2.423660 CCTTTCCCACCACAAGTACCAA 60.424 50.000 0.00 0.00 0.00 3.67
699 700 3.074390 TCCTCTTTTCATGGAAGCCTTCA 59.926 43.478 6.80 0.00 0.00 3.02
894 895 2.780010 CCAATCATACCCCTGAGAAGGT 59.220 50.000 0.00 0.00 40.31 3.50
909 910 3.181329 TCTCTTAAGACAGCCCCAATCA 58.819 45.455 0.00 0.00 0.00 2.57
913 914 2.501723 GTCATCTCTTAAGACAGCCCCA 59.498 50.000 0.00 0.00 33.32 4.96
915 916 3.895232 TGTCATCTCTTAAGACAGCCC 57.105 47.619 0.00 0.00 37.36 5.19
918 919 7.038659 CCTACCTTTGTCATCTCTTAAGACAG 58.961 42.308 0.00 0.00 42.54 3.51
962 963 3.557898 CCAGCACACCAGTCAATCTTACT 60.558 47.826 0.00 0.00 0.00 2.24
973 974 2.516695 TGCACACCAGCACACCAG 60.517 61.111 0.00 0.00 40.11 4.00
974 975 2.342073 ATCTGCACACCAGCACACCA 62.342 55.000 0.00 0.00 41.50 4.17
975 976 1.601759 ATCTGCACACCAGCACACC 60.602 57.895 0.00 0.00 41.50 4.16
976 977 1.168407 ACATCTGCACACCAGCACAC 61.168 55.000 0.00 0.00 41.50 3.82
977 978 1.148949 ACATCTGCACACCAGCACA 59.851 52.632 0.00 0.00 41.50 4.57
978 979 1.168407 ACACATCTGCACACCAGCAC 61.168 55.000 0.00 0.00 41.50 4.40
979 980 0.466007 AACACATCTGCACACCAGCA 60.466 50.000 0.00 0.00 41.50 4.41
980 981 0.039798 CAACACATCTGCACACCAGC 60.040 55.000 0.00 0.00 41.50 4.85
1010 1011 6.583050 CGATAGACCAAATTTTAACGCCAAAA 59.417 34.615 0.00 0.00 39.76 2.44
1041 1042 2.224784 ACGATTACAACCCGTCTTTTGC 59.775 45.455 0.00 0.00 29.82 3.68
1090 1091 3.491619 CCTTCGTTCATGGTCTCGATCAT 60.492 47.826 0.00 0.00 30.99 2.45
1108 1109 1.202698 CCCCAATGATCGTCCTCCTTC 60.203 57.143 0.00 0.00 0.00 3.46
1148 1149 6.480651 TCGCAAACTAAGTGAAAACAGTCATA 59.519 34.615 0.00 0.00 0.00 2.15
1334 1335 9.581099 TTTTTAAAGAAAGTTCGAGCTTCATTT 57.419 25.926 15.24 18.46 0.00 2.32
1396 1397 1.068472 ACGACTCGTGTGTTGGATCTC 60.068 52.381 2.53 0.00 39.18 2.75
1428 1429 8.683615 ACGAACTGGGAAAAATTAATATTCCTC 58.316 33.333 22.60 16.45 41.86 3.71
1432 1433 9.855021 CAAGACGAACTGGGAAAAATTAATATT 57.145 29.630 0.00 0.00 0.00 1.28
1434 1435 7.309920 GCAAGACGAACTGGGAAAAATTAATA 58.690 34.615 0.00 0.00 0.00 0.98
1436 1437 5.525199 GCAAGACGAACTGGGAAAAATTAA 58.475 37.500 0.00 0.00 0.00 1.40
1437 1438 5.116069 GCAAGACGAACTGGGAAAAATTA 57.884 39.130 0.00 0.00 0.00 1.40
1570 1576 3.501828 CGGAAAACTGGAACATGATGTGA 59.498 43.478 0.00 0.00 38.20 3.58
1646 1955 0.524862 ACTACAACGGCCGTAGACAG 59.475 55.000 34.44 26.04 38.94 3.51
1684 4605 2.093658 TGAAAGTCCTGGATTAGCCGTC 60.094 50.000 0.00 0.00 40.66 4.79
1745 4682 7.761038 TCTTTTCTTCTTGGGGAAAATACTC 57.239 36.000 0.00 0.00 39.60 2.59
1746 4683 7.255977 GCTTCTTTTCTTCTTGGGGAAAATACT 60.256 37.037 0.00 0.00 39.60 2.12
1747 4684 6.868864 GCTTCTTTTCTTCTTGGGGAAAATAC 59.131 38.462 0.00 0.00 39.60 1.89
1748 4685 6.782494 AGCTTCTTTTCTTCTTGGGGAAAATA 59.218 34.615 0.00 0.00 39.60 1.40
1749 4686 5.604231 AGCTTCTTTTCTTCTTGGGGAAAAT 59.396 36.000 0.00 0.00 39.60 1.82
1750 4687 4.962362 AGCTTCTTTTCTTCTTGGGGAAAA 59.038 37.500 0.00 0.00 38.55 2.29
1751 4688 4.342092 CAGCTTCTTTTCTTCTTGGGGAAA 59.658 41.667 0.00 0.00 33.07 3.13
1752 4689 3.891366 CAGCTTCTTTTCTTCTTGGGGAA 59.109 43.478 0.00 0.00 0.00 3.97
1753 4690 3.138283 TCAGCTTCTTTTCTTCTTGGGGA 59.862 43.478 0.00 0.00 0.00 4.81
1754 4691 3.490348 TCAGCTTCTTTTCTTCTTGGGG 58.510 45.455 0.00 0.00 0.00 4.96
1755 4692 5.718724 ATTCAGCTTCTTTTCTTCTTGGG 57.281 39.130 0.00 0.00 0.00 4.12
1756 4693 5.855395 CGAATTCAGCTTCTTTTCTTCTTGG 59.145 40.000 6.22 0.00 0.00 3.61
1757 4694 6.662616 TCGAATTCAGCTTCTTTTCTTCTTG 58.337 36.000 6.22 0.00 0.00 3.02
1758 4695 6.484977 ACTCGAATTCAGCTTCTTTTCTTCTT 59.515 34.615 6.22 0.00 0.00 2.52
1759 4696 5.994668 ACTCGAATTCAGCTTCTTTTCTTCT 59.005 36.000 6.22 0.00 0.00 2.85
1760 4697 6.147000 AGACTCGAATTCAGCTTCTTTTCTTC 59.853 38.462 6.22 0.00 0.00 2.87
1765 4739 6.274157 TCTAGACTCGAATTCAGCTTCTTT 57.726 37.500 6.22 0.00 0.00 2.52
1787 4761 3.242712 CGTGGCATGTGTTCAAGTTTTTC 59.757 43.478 0.00 0.00 0.00 2.29
1879 4854 4.293648 TGTGGAGACCGTGCGTGG 62.294 66.667 0.00 0.00 0.00 4.94
1880 4855 3.036084 GTGTGGAGACCGTGCGTG 61.036 66.667 0.00 0.00 0.00 5.34
1881 4856 4.640855 CGTGTGGAGACCGTGCGT 62.641 66.667 0.00 0.00 0.00 5.24
1903 4878 3.034635 AGTAGACTTTGGCCTGATCGAT 58.965 45.455 3.32 0.00 0.00 3.59
1904 4879 2.457598 AGTAGACTTTGGCCTGATCGA 58.542 47.619 3.32 0.00 0.00 3.59
1905 4880 2.969628 AGTAGACTTTGGCCTGATCG 57.030 50.000 3.32 0.00 0.00 3.69
1906 4881 3.536570 GGAAGTAGACTTTGGCCTGATC 58.463 50.000 3.32 0.00 36.11 2.92
1979 4956 1.895238 CCAGTGGTATTCGGTCGGT 59.105 57.895 0.00 0.00 0.00 4.69
2007 4984 4.260170 GAGGGAGTAGTCGTCTAGTGAAA 58.740 47.826 1.59 0.00 30.79 2.69
2010 4987 2.093075 TGGAGGGAGTAGTCGTCTAGTG 60.093 54.545 1.59 0.00 30.79 2.74
2023 5000 2.638480 TTATTTGCGGATGGAGGGAG 57.362 50.000 0.00 0.00 0.00 4.30
2024 5001 3.221771 CATTTATTTGCGGATGGAGGGA 58.778 45.455 0.00 0.00 0.00 4.20
2025 5002 2.958355 ACATTTATTTGCGGATGGAGGG 59.042 45.455 0.00 0.00 0.00 4.30
2026 5003 4.319477 CGTACATTTATTTGCGGATGGAGG 60.319 45.833 0.00 0.00 0.00 4.30
2027 5004 4.272504 ACGTACATTTATTTGCGGATGGAG 59.727 41.667 0.00 0.00 0.00 3.86
2028 5005 4.193090 ACGTACATTTATTTGCGGATGGA 58.807 39.130 0.00 0.00 0.00 3.41
2029 5006 4.272504 AGACGTACATTTATTTGCGGATGG 59.727 41.667 0.00 0.00 0.00 3.51
2030 5007 5.403897 AGACGTACATTTATTTGCGGATG 57.596 39.130 0.00 0.00 0.00 3.51
2031 5008 5.464389 GGTAGACGTACATTTATTTGCGGAT 59.536 40.000 0.00 0.00 0.00 4.18
2032 5009 4.805192 GGTAGACGTACATTTATTTGCGGA 59.195 41.667 0.00 0.00 0.00 5.54
2033 5010 4.807304 AGGTAGACGTACATTTATTTGCGG 59.193 41.667 0.00 0.00 0.00 5.69
2034 5011 5.961395 AGGTAGACGTACATTTATTTGCG 57.039 39.130 0.00 0.00 0.00 4.85
2035 5012 8.019094 ACAAAAGGTAGACGTACATTTATTTGC 58.981 33.333 1.91 0.00 41.20 3.68
2036 5013 9.887406 AACAAAAGGTAGACGTACATTTATTTG 57.113 29.630 1.91 5.38 41.20 2.32
2038 5015 9.275398 TGAACAAAAGGTAGACGTACATTTATT 57.725 29.630 1.91 1.03 41.20 1.40
2039 5016 8.836268 TGAACAAAAGGTAGACGTACATTTAT 57.164 30.769 1.91 0.00 41.20 1.40
2040 5017 8.659925 TTGAACAAAAGGTAGACGTACATTTA 57.340 30.769 1.91 0.00 41.20 1.40
2041 5018 7.556733 TTGAACAAAAGGTAGACGTACATTT 57.443 32.000 0.00 0.00 43.30 2.32
2042 5019 7.556733 TTTGAACAAAAGGTAGACGTACATT 57.443 32.000 0.00 0.00 34.63 2.71
2043 5020 7.186021 CTTTGAACAAAAGGTAGACGTACAT 57.814 36.000 0.00 0.00 41.46 2.29
2044 5021 6.592798 CTTTGAACAAAAGGTAGACGTACA 57.407 37.500 0.00 0.00 41.46 2.90
2045 5022 7.008440 AACTTTGAACAAAAGGTAGACGTAC 57.992 36.000 0.00 0.00 44.26 3.67
2046 5023 8.715191 TTAACTTTGAACAAAAGGTAGACGTA 57.285 30.769 0.00 0.00 46.31 3.57
2047 5024 7.614124 TTAACTTTGAACAAAAGGTAGACGT 57.386 32.000 0.00 0.00 46.31 4.34
2048 5025 8.179615 ACTTTAACTTTGAACAAAAGGTAGACG 58.820 33.333 3.15 0.00 46.31 4.18
2049 5026 9.850628 AACTTTAACTTTGAACAAAAGGTAGAC 57.149 29.630 3.15 0.00 46.31 2.59
2097 5074 9.717942 TTAATGCCATAAATGCTGTTACTTTTT 57.282 25.926 0.00 0.00 0.00 1.94
2098 5075 9.717942 TTTAATGCCATAAATGCTGTTACTTTT 57.282 25.926 0.00 0.00 0.00 2.27
2099 5076 9.889128 ATTTAATGCCATAAATGCTGTTACTTT 57.111 25.926 3.74 0.00 34.90 2.66
2100 5077 9.889128 AATTTAATGCCATAAATGCTGTTACTT 57.111 25.926 5.01 0.00 36.03 2.24
2103 5080 9.474920 GCTAATTTAATGCCATAAATGCTGTTA 57.525 29.630 5.01 0.00 36.03 2.41
2104 5081 7.986320 TGCTAATTTAATGCCATAAATGCTGTT 59.014 29.630 5.01 0.00 36.03 3.16
2105 5082 7.499292 TGCTAATTTAATGCCATAAATGCTGT 58.501 30.769 5.01 0.00 36.03 4.40
2106 5083 7.949903 TGCTAATTTAATGCCATAAATGCTG 57.050 32.000 5.01 1.72 36.03 4.41
2107 5084 8.369424 TGATGCTAATTTAATGCCATAAATGCT 58.631 29.630 5.01 0.00 36.03 3.79
2108 5085 8.437742 GTGATGCTAATTTAATGCCATAAATGC 58.562 33.333 5.01 5.94 36.03 3.56
2109 5086 9.701098 AGTGATGCTAATTTAATGCCATAAATG 57.299 29.630 5.01 0.00 36.03 2.32
2112 5089 9.791801 TCTAGTGATGCTAATTTAATGCCATAA 57.208 29.630 0.00 0.00 0.00 1.90
2113 5090 9.964354 ATCTAGTGATGCTAATTTAATGCCATA 57.036 29.630 0.00 0.00 0.00 2.74
2114 5091 8.874744 ATCTAGTGATGCTAATTTAATGCCAT 57.125 30.769 0.00 0.00 0.00 4.40
2115 5092 8.696043 AATCTAGTGATGCTAATTTAATGCCA 57.304 30.769 0.00 0.00 32.44 4.92
2116 5093 7.959651 CGAATCTAGTGATGCTAATTTAATGCC 59.040 37.037 0.00 0.00 32.44 4.40
2117 5094 8.499162 ACGAATCTAGTGATGCTAATTTAATGC 58.501 33.333 0.00 0.00 32.44 3.56
2127 5104 8.730680 ACATTTAAAAACGAATCTAGTGATGCT 58.269 29.630 0.00 0.00 32.44 3.79
2128 5105 8.895932 ACATTTAAAAACGAATCTAGTGATGC 57.104 30.769 0.00 0.00 32.44 3.91
2238 5215 9.659830 GTTCGTGAACAAGTGTATTTTTATCTT 57.340 29.630 7.83 0.00 40.84 2.40
2239 5216 8.007716 CGTTCGTGAACAAGTGTATTTTTATCT 58.992 33.333 12.76 0.00 41.20 1.98
2240 5217 7.267600 CCGTTCGTGAACAAGTGTATTTTTATC 59.732 37.037 12.76 0.00 41.20 1.75
2241 5218 7.041916 TCCGTTCGTGAACAAGTGTATTTTTAT 60.042 33.333 12.76 0.00 41.20 1.40
2242 5219 6.257411 TCCGTTCGTGAACAAGTGTATTTTTA 59.743 34.615 12.76 0.00 41.20 1.52
2243 5220 5.064962 TCCGTTCGTGAACAAGTGTATTTTT 59.935 36.000 12.76 0.00 41.20 1.94
2244 5221 4.571580 TCCGTTCGTGAACAAGTGTATTTT 59.428 37.500 12.76 0.00 41.20 1.82
2245 5222 4.121317 TCCGTTCGTGAACAAGTGTATTT 58.879 39.130 12.76 0.00 41.20 1.40
2246 5223 3.719924 TCCGTTCGTGAACAAGTGTATT 58.280 40.909 12.76 0.00 41.20 1.89
2247 5224 3.314553 CTCCGTTCGTGAACAAGTGTAT 58.685 45.455 12.76 0.00 41.20 2.29
2248 5225 2.544277 CCTCCGTTCGTGAACAAGTGTA 60.544 50.000 12.76 0.00 41.20 2.90
2249 5226 1.567504 CTCCGTTCGTGAACAAGTGT 58.432 50.000 12.76 0.00 41.20 3.55
2250 5227 0.859232 CCTCCGTTCGTGAACAAGTG 59.141 55.000 12.76 4.71 41.20 3.16
2251 5228 0.249741 CCCTCCGTTCGTGAACAAGT 60.250 55.000 12.76 0.00 41.20 3.16
2252 5229 0.032952 TCCCTCCGTTCGTGAACAAG 59.967 55.000 12.76 8.79 41.20 3.16
2253 5230 0.032952 CTCCCTCCGTTCGTGAACAA 59.967 55.000 12.76 0.02 41.20 2.83
2254 5231 1.111116 ACTCCCTCCGTTCGTGAACA 61.111 55.000 12.76 0.00 41.20 3.18
2255 5232 0.666577 CACTCCCTCCGTTCGTGAAC 60.667 60.000 2.63 2.63 37.92 3.18
2256 5233 1.663739 CACTCCCTCCGTTCGTGAA 59.336 57.895 0.00 0.00 0.00 3.18
2257 5234 2.273179 CCACTCCCTCCGTTCGTGA 61.273 63.158 0.00 0.00 0.00 4.35
2258 5235 2.261671 CCACTCCCTCCGTTCGTG 59.738 66.667 0.00 0.00 0.00 4.35
2259 5236 2.776370 TAGCCACTCCCTCCGTTCGT 62.776 60.000 0.00 0.00 0.00 3.85
2260 5237 2.005960 CTAGCCACTCCCTCCGTTCG 62.006 65.000 0.00 0.00 0.00 3.95
2261 5238 1.677637 CCTAGCCACTCCCTCCGTTC 61.678 65.000 0.00 0.00 0.00 3.95
2262 5239 1.686110 CCTAGCCACTCCCTCCGTT 60.686 63.158 0.00 0.00 0.00 4.44
2263 5240 2.042843 CCTAGCCACTCCCTCCGT 60.043 66.667 0.00 0.00 0.00 4.69
2264 5241 1.830408 CTCCTAGCCACTCCCTCCG 60.830 68.421 0.00 0.00 0.00 4.63
2265 5242 0.325765 AACTCCTAGCCACTCCCTCC 60.326 60.000 0.00 0.00 0.00 4.30
2266 5243 0.827368 CAACTCCTAGCCACTCCCTC 59.173 60.000 0.00 0.00 0.00 4.30
2267 5244 0.618968 CCAACTCCTAGCCACTCCCT 60.619 60.000 0.00 0.00 0.00 4.20
2268 5245 1.908483 CCAACTCCTAGCCACTCCC 59.092 63.158 0.00 0.00 0.00 4.30
2269 5246 1.222113 GCCAACTCCTAGCCACTCC 59.778 63.158 0.00 0.00 0.00 3.85
2270 5247 0.391793 GTGCCAACTCCTAGCCACTC 60.392 60.000 0.00 0.00 0.00 3.51
2271 5248 1.679898 GTGCCAACTCCTAGCCACT 59.320 57.895 0.00 0.00 0.00 4.00
2272 5249 1.377333 GGTGCCAACTCCTAGCCAC 60.377 63.158 0.00 0.00 0.00 5.01
2273 5250 1.845664 TGGTGCCAACTCCTAGCCA 60.846 57.895 0.00 0.00 0.00 4.75
2274 5251 1.377333 GTGGTGCCAACTCCTAGCC 60.377 63.158 0.00 0.00 0.00 3.93
2275 5252 1.377333 GGTGGTGCCAACTCCTAGC 60.377 63.158 0.00 0.00 37.17 3.42
2276 5253 1.079127 CGGTGGTGCCAACTCCTAG 60.079 63.158 4.63 0.00 36.97 3.02
2277 5254 2.589157 CCGGTGGTGCCAACTCCTA 61.589 63.158 4.63 0.00 36.97 2.94
2278 5255 3.953775 CCGGTGGTGCCAACTCCT 61.954 66.667 4.63 0.00 36.97 3.69
2279 5256 3.901797 CTCCGGTGGTGCCAACTCC 62.902 68.421 0.00 0.00 36.97 3.85
2280 5257 2.358737 CTCCGGTGGTGCCAACTC 60.359 66.667 0.00 0.00 36.97 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.