Multiple sequence alignment - TraesCS5A01G249200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G249200 chr5A 100.000 5333 0 0 1 5333 463767097 463761765 0.000000e+00 9849.0
1 TraesCS5A01G249200 chr5D 88.531 1892 58 62 364 2174 362665676 362663863 0.000000e+00 2145.0
2 TraesCS5A01G249200 chr5D 92.214 1477 64 13 3519 4952 362663034 362661566 0.000000e+00 2043.0
3 TraesCS5A01G249200 chr5D 93.673 569 19 7 2926 3482 362663596 362663033 0.000000e+00 835.0
4 TraesCS5A01G249200 chr5D 88.793 232 14 6 2176 2396 362663818 362663588 1.890000e-69 274.0
5 TraesCS5A01G249200 chr5B 89.868 1520 74 29 560 2031 428963843 428962356 0.000000e+00 1881.0
6 TraesCS5A01G249200 chr5B 96.125 1058 32 5 3580 4637 428961225 428960177 0.000000e+00 1718.0
7 TraesCS5A01G249200 chr5B 88.671 662 34 15 2946 3591 428961916 428961280 0.000000e+00 769.0
8 TraesCS5A01G249200 chr5B 90.888 428 27 9 4759 5179 428960082 428959660 1.000000e-156 564.0
9 TraesCS5A01G249200 chr5B 86.636 217 21 5 2185 2395 428962151 428961937 3.210000e-57 233.0
10 TraesCS5A01G249200 chr5B 92.105 114 8 1 431 544 428964250 428964138 5.530000e-35 159.0
11 TraesCS5A01G249200 chr6A 91.238 525 46 0 2397 2921 2277294 2277818 0.000000e+00 715.0
12 TraesCS5A01G249200 chr3A 89.734 526 41 5 2396 2921 615941610 615941098 0.000000e+00 660.0
13 TraesCS5A01G249200 chr3A 90.099 505 48 2 2397 2900 26528632 26529135 0.000000e+00 654.0
14 TraesCS5A01G249200 chr2B 88.994 527 56 2 2397 2921 150739336 150738810 0.000000e+00 651.0
15 TraesCS5A01G249200 chr2B 94.286 35 2 0 1190 1224 531053210 531053244 3.000000e-03 54.7
16 TraesCS5A01G249200 chr4D 88.497 539 46 4 2397 2921 406229925 406229389 5.820000e-179 638.0
17 TraesCS5A01G249200 chr4D 88.268 537 51 4 2397 2921 108101793 108101257 2.710000e-177 632.0
18 TraesCS5A01G249200 chr4D 78.035 173 29 9 1349 1517 394379105 394378938 3.400000e-17 100.0
19 TraesCS5A01G249200 chr4D 100.000 32 0 0 1190 1221 394379219 394379188 5.770000e-05 60.2
20 TraesCS5A01G249200 chr7D 88.403 526 61 0 2396 2921 2825488 2826013 7.540000e-178 634.0
21 TraesCS5A01G249200 chr7D 91.791 268 22 0 2654 2921 431053814 431054081 1.810000e-99 374.0
22 TraesCS5A01G249200 chr7D 77.143 210 41 7 1349 1555 535967326 535967531 1.210000e-21 115.0
23 TraesCS5A01G249200 chr6D 88.454 537 47 7 2397 2921 395389677 395389144 7.540000e-178 634.0
24 TraesCS5A01G249200 chr3B 87.931 522 59 3 2402 2922 734230500 734231018 3.530000e-171 612.0
25 TraesCS5A01G249200 chr3B 87.548 522 61 3 2402 2922 734238854 734239372 7.640000e-168 601.0
26 TraesCS5A01G249200 chr3B 83.333 132 20 2 5198 5328 451848666 451848536 2.610000e-23 121.0
27 TraesCS5A01G249200 chr3B 85.526 76 6 3 295 367 603462564 603462637 2.060000e-09 75.0
28 TraesCS5A01G249200 chr3B 100.000 32 0 0 336 367 760954030 760953999 5.770000e-05 60.2
29 TraesCS5A01G249200 chr1B 87.127 536 51 7 2400 2921 429199844 429199313 4.600000e-165 592.0
30 TraesCS5A01G249200 chr1B 76.847 203 38 9 1349 1547 162006012 162005815 7.300000e-19 106.0
31 TraesCS5A01G249200 chr7B 74.913 287 60 9 4633 4913 556331348 556331068 2.610000e-23 121.0
32 TraesCS5A01G249200 chr7B 77.143 210 41 7 1349 1555 578438823 578439028 1.210000e-21 115.0
33 TraesCS5A01G249200 chr7B 78.571 140 22 8 1092 1227 503496261 503496396 9.520000e-13 86.1
34 TraesCS5A01G249200 chr1D 77.073 205 41 6 1346 1547 104543891 104544092 4.370000e-21 113.0
35 TraesCS5A01G249200 chr1D 75.943 212 42 9 1349 1556 467611814 467611608 3.400000e-17 100.0
36 TraesCS5A01G249200 chr1D 96.774 31 1 0 295 325 400113792 400113822 1.000000e-02 52.8
37 TraesCS5A01G249200 chr1A 76.585 205 42 6 1346 1547 107485372 107485171 2.030000e-19 108.0
38 TraesCS5A01G249200 chrUn 85.915 71 10 0 298 368 40190553 40190483 5.730000e-10 76.8
39 TraesCS5A01G249200 chr6B 97.561 41 1 0 3529 3569 522637378 522637338 2.660000e-08 71.3
40 TraesCS5A01G249200 chr4A 79.381 97 16 3 1130 1224 75843218 75843124 1.240000e-06 65.8
41 TraesCS5A01G249200 chr4B 100.000 29 0 0 1193 1221 484105788 484105760 3.000000e-03 54.7
42 TraesCS5A01G249200 chr2D 92.308 39 2 1 1190 1228 450918303 450918340 3.000000e-03 54.7
43 TraesCS5A01G249200 chr2A 92.308 39 2 1 1190 1228 598642399 598642362 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G249200 chr5A 463761765 463767097 5332 True 9849.000000 9849 100.00000 1 5333 1 chr5A.!!$R1 5332
1 TraesCS5A01G249200 chr5D 362661566 362665676 4110 True 1324.250000 2145 90.80275 364 4952 4 chr5D.!!$R1 4588
2 TraesCS5A01G249200 chr5B 428959660 428964250 4590 True 887.333333 1881 90.71550 431 5179 6 chr5B.!!$R1 4748
3 TraesCS5A01G249200 chr6A 2277294 2277818 524 False 715.000000 715 91.23800 2397 2921 1 chr6A.!!$F1 524
4 TraesCS5A01G249200 chr3A 615941098 615941610 512 True 660.000000 660 89.73400 2396 2921 1 chr3A.!!$R1 525
5 TraesCS5A01G249200 chr3A 26528632 26529135 503 False 654.000000 654 90.09900 2397 2900 1 chr3A.!!$F1 503
6 TraesCS5A01G249200 chr2B 150738810 150739336 526 True 651.000000 651 88.99400 2397 2921 1 chr2B.!!$R1 524
7 TraesCS5A01G249200 chr4D 406229389 406229925 536 True 638.000000 638 88.49700 2397 2921 1 chr4D.!!$R2 524
8 TraesCS5A01G249200 chr4D 108101257 108101793 536 True 632.000000 632 88.26800 2397 2921 1 chr4D.!!$R1 524
9 TraesCS5A01G249200 chr7D 2825488 2826013 525 False 634.000000 634 88.40300 2396 2921 1 chr7D.!!$F1 525
10 TraesCS5A01G249200 chr6D 395389144 395389677 533 True 634.000000 634 88.45400 2397 2921 1 chr6D.!!$R1 524
11 TraesCS5A01G249200 chr3B 734230500 734231018 518 False 612.000000 612 87.93100 2402 2922 1 chr3B.!!$F2 520
12 TraesCS5A01G249200 chr3B 734238854 734239372 518 False 601.000000 601 87.54800 2402 2922 1 chr3B.!!$F3 520
13 TraesCS5A01G249200 chr1B 429199313 429199844 531 True 592.000000 592 87.12700 2400 2921 1 chr1B.!!$R2 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.033504 TTGCTTCGCGAGGACTTCTT 59.966 50.0 23.59 0.0 0.0 2.52 F
122 123 0.038526 TTCGCGAGGACTTCTTGACC 60.039 55.0 9.59 0.0 0.0 4.02 F
292 293 0.181114 TGGGCTCACCATGACTATGC 59.819 55.0 0.00 0.0 46.8 3.14 F
1342 1693 0.379316 GGTTTCGGCGGCGATTTTAT 59.621 50.0 35.04 0.0 0.0 1.40 F
2862 3354 0.458260 GGGCGTCACACAAAAAGGTT 59.542 50.0 0.00 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2338 0.683504 ACCACAGGTAGGAGTAGGCG 60.684 60.000 0.00 0.0 32.11 5.52 R
1987 2339 1.112950 GACCACAGGTAGGAGTAGGC 58.887 60.000 0.00 0.0 35.25 3.93 R
1993 2345 1.228769 ACGCTGACCACAGGTAGGA 60.229 57.895 0.00 0.0 43.62 2.94 R
3192 3684 1.121240 CGACAGAACGTGTGTGAGAC 58.879 55.000 8.47 0.0 40.56 3.36 R
4746 5368 0.666577 GGCCATACACGCGGATACTC 60.667 60.000 12.47 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.799366 TGTTAACGATGTGTGGTCAACT 58.201 40.909 0.26 0.00 0.00 3.16
22 23 4.946445 TGTTAACGATGTGTGGTCAACTA 58.054 39.130 0.26 0.00 0.00 2.24
23 24 4.986034 TGTTAACGATGTGTGGTCAACTAG 59.014 41.667 0.26 0.00 0.00 2.57
24 25 3.746045 AACGATGTGTGGTCAACTAGT 57.254 42.857 0.00 0.00 0.00 2.57
25 26 3.299340 ACGATGTGTGGTCAACTAGTC 57.701 47.619 0.00 0.00 0.00 2.59
26 27 2.251040 CGATGTGTGGTCAACTAGTCG 58.749 52.381 0.00 0.00 0.00 4.18
27 28 2.351447 CGATGTGTGGTCAACTAGTCGT 60.351 50.000 0.00 0.00 0.00 4.34
28 29 2.502213 TGTGTGGTCAACTAGTCGTG 57.498 50.000 0.00 0.00 0.00 4.35
29 30 1.137513 GTGTGGTCAACTAGTCGTGC 58.862 55.000 0.00 0.00 0.00 5.34
30 31 1.037493 TGTGGTCAACTAGTCGTGCT 58.963 50.000 0.00 0.00 0.00 4.40
31 32 1.000607 TGTGGTCAACTAGTCGTGCTC 60.001 52.381 0.00 0.00 0.00 4.26
32 33 0.601558 TGGTCAACTAGTCGTGCTCC 59.398 55.000 0.00 0.00 0.00 4.70
33 34 0.108756 GGTCAACTAGTCGTGCTCCC 60.109 60.000 0.00 0.00 0.00 4.30
34 35 0.889306 GTCAACTAGTCGTGCTCCCT 59.111 55.000 0.00 0.00 0.00 4.20
35 36 1.135344 GTCAACTAGTCGTGCTCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
36 37 0.888619 CAACTAGTCGTGCTCCCTCA 59.111 55.000 0.00 0.00 0.00 3.86
37 38 1.272490 CAACTAGTCGTGCTCCCTCAA 59.728 52.381 0.00 0.00 0.00 3.02
38 39 1.853963 ACTAGTCGTGCTCCCTCAAT 58.146 50.000 0.00 0.00 0.00 2.57
39 40 2.180276 ACTAGTCGTGCTCCCTCAATT 58.820 47.619 0.00 0.00 0.00 2.32
40 41 2.093973 ACTAGTCGTGCTCCCTCAATTG 60.094 50.000 0.00 0.00 0.00 2.32
41 42 0.976641 AGTCGTGCTCCCTCAATTGA 59.023 50.000 8.12 8.12 0.00 2.57
42 43 1.347707 AGTCGTGCTCCCTCAATTGAA 59.652 47.619 9.88 0.00 0.00 2.69
43 44 2.151202 GTCGTGCTCCCTCAATTGAAA 58.849 47.619 9.88 0.00 0.00 2.69
44 45 2.552315 GTCGTGCTCCCTCAATTGAAAA 59.448 45.455 9.88 0.00 0.00 2.29
45 46 3.191371 GTCGTGCTCCCTCAATTGAAAAT 59.809 43.478 9.88 0.00 0.00 1.82
46 47 3.440173 TCGTGCTCCCTCAATTGAAAATC 59.560 43.478 9.88 0.00 0.00 2.17
47 48 3.728864 CGTGCTCCCTCAATTGAAAATCG 60.729 47.826 9.88 4.93 0.00 3.34
48 49 3.440173 GTGCTCCCTCAATTGAAAATCGA 59.560 43.478 9.88 0.00 0.00 3.59
49 50 3.440173 TGCTCCCTCAATTGAAAATCGAC 59.560 43.478 9.88 0.00 0.00 4.20
50 51 3.181496 GCTCCCTCAATTGAAAATCGACC 60.181 47.826 9.88 0.00 0.00 4.79
51 52 4.265073 CTCCCTCAATTGAAAATCGACCT 58.735 43.478 9.88 0.00 0.00 3.85
52 53 4.261801 TCCCTCAATTGAAAATCGACCTC 58.738 43.478 9.88 0.00 0.00 3.85
53 54 4.009675 CCCTCAATTGAAAATCGACCTCA 58.990 43.478 9.88 0.00 0.00 3.86
54 55 4.641989 CCCTCAATTGAAAATCGACCTCAT 59.358 41.667 9.88 0.00 0.00 2.90
55 56 5.822519 CCCTCAATTGAAAATCGACCTCATA 59.177 40.000 9.88 0.00 0.00 2.15
56 57 6.318648 CCCTCAATTGAAAATCGACCTCATAA 59.681 38.462 9.88 0.00 0.00 1.90
57 58 7.148086 CCCTCAATTGAAAATCGACCTCATAAA 60.148 37.037 9.88 0.00 0.00 1.40
58 59 7.912250 CCTCAATTGAAAATCGACCTCATAAAG 59.088 37.037 9.88 0.00 0.00 1.85
59 60 8.335532 TCAATTGAAAATCGACCTCATAAAGT 57.664 30.769 5.45 0.00 0.00 2.66
60 61 8.236586 TCAATTGAAAATCGACCTCATAAAGTG 58.763 33.333 5.45 0.00 0.00 3.16
61 62 6.494893 TTGAAAATCGACCTCATAAAGTGG 57.505 37.500 0.00 0.00 36.93 4.00
62 63 4.941263 TGAAAATCGACCTCATAAAGTGGG 59.059 41.667 0.00 0.00 35.15 4.61
69 70 3.669939 CCTCATAAAGTGGGGTCCATT 57.330 47.619 0.00 0.00 44.09 3.16
70 71 3.555966 CCTCATAAAGTGGGGTCCATTC 58.444 50.000 0.00 0.00 44.09 2.67
71 72 3.203040 CCTCATAAAGTGGGGTCCATTCT 59.797 47.826 0.00 0.00 44.09 2.40
72 73 4.325344 CCTCATAAAGTGGGGTCCATTCTT 60.325 45.833 0.00 0.00 44.09 2.52
73 74 5.264395 CTCATAAAGTGGGGTCCATTCTTT 58.736 41.667 7.41 7.41 35.19 2.52
74 75 5.016173 TCATAAAGTGGGGTCCATTCTTTG 58.984 41.667 10.78 0.47 33.06 2.77
76 77 1.158007 AGTGGGGTCCATTCTTTGGT 58.842 50.000 0.00 0.00 46.52 3.67
77 78 1.503347 AGTGGGGTCCATTCTTTGGTT 59.497 47.619 0.00 0.00 46.52 3.67
78 79 1.618343 GTGGGGTCCATTCTTTGGTTG 59.382 52.381 0.00 0.00 46.52 3.77
79 80 0.608130 GGGGTCCATTCTTTGGTTGC 59.392 55.000 0.00 0.00 46.52 4.17
80 81 0.243636 GGGTCCATTCTTTGGTTGCG 59.756 55.000 0.00 0.00 46.52 4.85
81 82 0.388520 GGTCCATTCTTTGGTTGCGC 60.389 55.000 0.00 0.00 46.52 6.09
82 83 0.313672 GTCCATTCTTTGGTTGCGCA 59.686 50.000 5.66 5.66 46.52 6.09
83 84 1.067635 GTCCATTCTTTGGTTGCGCAT 60.068 47.619 12.75 0.00 46.52 4.73
84 85 2.163412 GTCCATTCTTTGGTTGCGCATA 59.837 45.455 12.75 0.00 46.52 3.14
85 86 2.423185 TCCATTCTTTGGTTGCGCATAG 59.577 45.455 12.75 4.26 46.52 2.23
86 87 3.049785 CCATTCTTTGGTTGCGCATAGC 61.050 50.000 12.75 12.73 42.99 2.97
87 88 5.524127 CCATTCTTTGGTTGCGCATAGCA 62.524 47.826 12.75 15.34 46.92 3.49
88 89 6.753409 CCATTCTTTGGTTGCGCATAGCAT 62.753 45.833 12.75 0.12 46.18 3.79
89 90 7.447895 CCATTCTTTGGTTGCGCATAGCATA 62.448 44.000 12.75 12.04 46.18 3.14
111 112 4.751539 CAATGTTGCTTCGCGAGG 57.248 55.556 14.69 14.69 0.00 4.63
112 113 2.161831 CAATGTTGCTTCGCGAGGA 58.838 52.632 23.59 9.06 0.00 3.71
113 114 0.179215 CAATGTTGCTTCGCGAGGAC 60.179 55.000 23.59 12.62 0.00 3.85
114 115 0.320771 AATGTTGCTTCGCGAGGACT 60.321 50.000 23.59 0.00 0.00 3.85
115 116 0.320771 ATGTTGCTTCGCGAGGACTT 60.321 50.000 23.59 7.48 0.00 3.01
116 117 0.944311 TGTTGCTTCGCGAGGACTTC 60.944 55.000 23.59 4.43 0.00 3.01
117 118 0.667792 GTTGCTTCGCGAGGACTTCT 60.668 55.000 23.59 0.00 0.00 2.85
118 119 0.033504 TTGCTTCGCGAGGACTTCTT 59.966 50.000 23.59 0.00 0.00 2.52
119 120 0.667487 TGCTTCGCGAGGACTTCTTG 60.667 55.000 23.59 0.65 0.00 3.02
120 121 0.388649 GCTTCGCGAGGACTTCTTGA 60.389 55.000 23.59 0.00 0.00 3.02
121 122 1.341606 CTTCGCGAGGACTTCTTGAC 58.658 55.000 13.72 0.00 0.00 3.18
122 123 0.038526 TTCGCGAGGACTTCTTGACC 60.039 55.000 9.59 0.00 0.00 4.02
123 124 0.894184 TCGCGAGGACTTCTTGACCT 60.894 55.000 3.71 0.00 43.25 3.85
124 125 0.734253 CGCGAGGACTTCTTGACCTG 60.734 60.000 0.00 0.00 40.76 4.00
125 126 0.603569 GCGAGGACTTCTTGACCTGA 59.396 55.000 0.00 0.00 40.76 3.86
126 127 1.000955 GCGAGGACTTCTTGACCTGAA 59.999 52.381 0.00 0.00 40.76 3.02
127 128 2.548067 GCGAGGACTTCTTGACCTGAAA 60.548 50.000 0.00 0.00 40.76 2.69
128 129 3.728845 CGAGGACTTCTTGACCTGAAAA 58.271 45.455 0.00 0.00 40.76 2.29
129 130 3.495001 CGAGGACTTCTTGACCTGAAAAC 59.505 47.826 0.00 0.00 40.76 2.43
130 131 4.451900 GAGGACTTCTTGACCTGAAAACA 58.548 43.478 0.00 0.00 40.76 2.83
131 132 4.200092 AGGACTTCTTGACCTGAAAACAC 58.800 43.478 0.00 0.00 39.29 3.32
132 133 3.945285 GGACTTCTTGACCTGAAAACACA 59.055 43.478 0.00 0.00 0.00 3.72
133 134 4.398044 GGACTTCTTGACCTGAAAACACAA 59.602 41.667 0.00 0.00 0.00 3.33
134 135 5.067805 GGACTTCTTGACCTGAAAACACAAT 59.932 40.000 0.00 0.00 0.00 2.71
135 136 6.136541 ACTTCTTGACCTGAAAACACAATC 57.863 37.500 0.00 0.00 0.00 2.67
136 137 4.811555 TCTTGACCTGAAAACACAATCG 57.188 40.909 0.00 0.00 0.00 3.34
137 138 4.447290 TCTTGACCTGAAAACACAATCGA 58.553 39.130 0.00 0.00 0.00 3.59
138 139 5.063204 TCTTGACCTGAAAACACAATCGAT 58.937 37.500 0.00 0.00 0.00 3.59
139 140 4.747540 TGACCTGAAAACACAATCGATG 57.252 40.909 0.00 0.00 0.00 3.84
140 141 3.501828 TGACCTGAAAACACAATCGATGG 59.498 43.478 0.00 0.00 0.00 3.51
141 142 3.486383 ACCTGAAAACACAATCGATGGT 58.514 40.909 0.00 0.00 0.00 3.55
142 143 3.888930 ACCTGAAAACACAATCGATGGTT 59.111 39.130 1.58 3.66 0.00 3.67
143 144 5.067273 ACCTGAAAACACAATCGATGGTTA 58.933 37.500 1.58 0.00 0.00 2.85
144 145 5.048991 ACCTGAAAACACAATCGATGGTTAC 60.049 40.000 1.58 5.63 0.00 2.50
145 146 5.181245 CCTGAAAACACAATCGATGGTTACT 59.819 40.000 1.58 0.00 0.00 2.24
146 147 6.236017 TGAAAACACAATCGATGGTTACTC 57.764 37.500 1.58 7.54 0.00 2.59
147 148 5.760743 TGAAAACACAATCGATGGTTACTCA 59.239 36.000 1.58 9.66 0.00 3.41
148 149 5.607119 AAACACAATCGATGGTTACTCAC 57.393 39.130 1.58 0.00 0.00 3.51
149 150 4.265904 ACACAATCGATGGTTACTCACA 57.734 40.909 1.58 0.00 0.00 3.58
150 151 4.245660 ACACAATCGATGGTTACTCACAG 58.754 43.478 1.58 0.00 0.00 3.66
151 152 4.245660 CACAATCGATGGTTACTCACAGT 58.754 43.478 1.58 0.00 0.00 3.55
152 153 4.690748 CACAATCGATGGTTACTCACAGTT 59.309 41.667 1.58 0.00 0.00 3.16
153 154 4.690748 ACAATCGATGGTTACTCACAGTTG 59.309 41.667 0.00 0.00 0.00 3.16
154 155 4.801330 ATCGATGGTTACTCACAGTTGA 57.199 40.909 0.00 0.00 0.00 3.18
166 167 4.670896 TCACAGTTGAGATTGTGAGTCA 57.329 40.909 3.40 0.00 44.49 3.41
167 168 5.219343 TCACAGTTGAGATTGTGAGTCAT 57.781 39.130 0.00 0.00 44.49 3.06
168 169 5.614308 TCACAGTTGAGATTGTGAGTCATT 58.386 37.500 0.00 0.00 44.49 2.57
169 170 6.057533 TCACAGTTGAGATTGTGAGTCATTT 58.942 36.000 0.00 0.00 44.49 2.32
170 171 6.543465 TCACAGTTGAGATTGTGAGTCATTTT 59.457 34.615 0.00 0.00 44.49 1.82
171 172 7.067372 TCACAGTTGAGATTGTGAGTCATTTTT 59.933 33.333 0.00 0.00 44.49 1.94
191 192 5.885449 TTTTTCACTCATCCAACCCAATT 57.115 34.783 0.00 0.00 0.00 2.32
192 193 5.885449 TTTTCACTCATCCAACCCAATTT 57.115 34.783 0.00 0.00 0.00 1.82
193 194 6.985653 TTTTCACTCATCCAACCCAATTTA 57.014 33.333 0.00 0.00 0.00 1.40
194 195 7.552050 TTTTCACTCATCCAACCCAATTTAT 57.448 32.000 0.00 0.00 0.00 1.40
195 196 8.657387 TTTTCACTCATCCAACCCAATTTATA 57.343 30.769 0.00 0.00 0.00 0.98
196 197 8.837099 TTTCACTCATCCAACCCAATTTATAT 57.163 30.769 0.00 0.00 0.00 0.86
197 198 8.837099 TTCACTCATCCAACCCAATTTATATT 57.163 30.769 0.00 0.00 0.00 1.28
198 199 8.837099 TCACTCATCCAACCCAATTTATATTT 57.163 30.769 0.00 0.00 0.00 1.40
199 200 8.694540 TCACTCATCCAACCCAATTTATATTTG 58.305 33.333 0.00 0.00 0.00 2.32
200 201 7.927629 CACTCATCCAACCCAATTTATATTTGG 59.072 37.037 7.64 7.64 42.73 3.28
201 202 7.843760 ACTCATCCAACCCAATTTATATTTGGA 59.156 33.333 13.86 5.20 45.35 3.53
202 203 8.248904 TCATCCAACCCAATTTATATTTGGAG 57.751 34.615 13.86 8.33 45.35 3.86
203 204 7.843760 TCATCCAACCCAATTTATATTTGGAGT 59.156 33.333 13.86 8.79 45.35 3.85
204 205 7.416964 TCCAACCCAATTTATATTTGGAGTG 57.583 36.000 13.86 11.09 45.35 3.51
205 206 7.185565 TCCAACCCAATTTATATTTGGAGTGA 58.814 34.615 13.86 5.19 45.35 3.41
206 207 7.843760 TCCAACCCAATTTATATTTGGAGTGAT 59.156 33.333 13.86 0.00 45.35 3.06
207 208 9.142014 CCAACCCAATTTATATTTGGAGTGATA 57.858 33.333 13.86 0.00 45.35 2.15
208 209 9.965824 CAACCCAATTTATATTTGGAGTGATAC 57.034 33.333 13.86 0.00 45.35 2.24
209 210 9.936329 AACCCAATTTATATTTGGAGTGATACT 57.064 29.630 13.86 0.00 45.35 2.12
210 211 9.354673 ACCCAATTTATATTTGGAGTGATACTG 57.645 33.333 13.86 0.96 45.35 2.74
211 212 9.573166 CCCAATTTATATTTGGAGTGATACTGA 57.427 33.333 13.86 0.00 45.35 3.41
234 235 5.444663 AAAAAGCACCTGCAAAACAAAAA 57.555 30.435 0.00 0.00 45.16 1.94
253 254 4.571372 AAAAACCGCAAAAGATAACCGA 57.429 36.364 0.00 0.00 0.00 4.69
254 255 4.571372 AAAACCGCAAAAGATAACCGAA 57.429 36.364 0.00 0.00 0.00 4.30
255 256 4.571372 AAACCGCAAAAGATAACCGAAA 57.429 36.364 0.00 0.00 0.00 3.46
256 257 4.571372 AACCGCAAAAGATAACCGAAAA 57.429 36.364 0.00 0.00 0.00 2.29
257 258 4.571372 ACCGCAAAAGATAACCGAAAAA 57.429 36.364 0.00 0.00 0.00 1.94
258 259 4.542735 ACCGCAAAAGATAACCGAAAAAG 58.457 39.130 0.00 0.00 0.00 2.27
259 260 4.276431 ACCGCAAAAGATAACCGAAAAAGA 59.724 37.500 0.00 0.00 0.00 2.52
260 261 4.851558 CCGCAAAAGATAACCGAAAAAGAG 59.148 41.667 0.00 0.00 0.00 2.85
261 262 5.334569 CCGCAAAAGATAACCGAAAAAGAGA 60.335 40.000 0.00 0.00 0.00 3.10
262 263 6.140110 CGCAAAAGATAACCGAAAAAGAGAA 58.860 36.000 0.00 0.00 0.00 2.87
263 264 6.635239 CGCAAAAGATAACCGAAAAAGAGAAA 59.365 34.615 0.00 0.00 0.00 2.52
264 265 7.149128 CGCAAAAGATAACCGAAAAAGAGAAAG 60.149 37.037 0.00 0.00 0.00 2.62
265 266 7.114953 GCAAAAGATAACCGAAAAAGAGAAAGG 59.885 37.037 0.00 0.00 0.00 3.11
266 267 5.881777 AGATAACCGAAAAAGAGAAAGGC 57.118 39.130 0.00 0.00 0.00 4.35
267 268 5.313712 AGATAACCGAAAAAGAGAAAGGCA 58.686 37.500 0.00 0.00 0.00 4.75
268 269 5.768164 AGATAACCGAAAAAGAGAAAGGCAA 59.232 36.000 0.00 0.00 0.00 4.52
269 270 4.729227 AACCGAAAAAGAGAAAGGCAAA 57.271 36.364 0.00 0.00 0.00 3.68
270 271 4.937201 ACCGAAAAAGAGAAAGGCAAAT 57.063 36.364 0.00 0.00 0.00 2.32
271 272 6.399639 AACCGAAAAAGAGAAAGGCAAATA 57.600 33.333 0.00 0.00 0.00 1.40
272 273 6.399639 ACCGAAAAAGAGAAAGGCAAATAA 57.600 33.333 0.00 0.00 0.00 1.40
273 274 6.993079 ACCGAAAAAGAGAAAGGCAAATAAT 58.007 32.000 0.00 0.00 0.00 1.28
274 275 6.868339 ACCGAAAAAGAGAAAGGCAAATAATG 59.132 34.615 0.00 0.00 0.00 1.90
275 276 6.311200 CCGAAAAAGAGAAAGGCAAATAATGG 59.689 38.462 0.00 0.00 0.00 3.16
276 277 6.311200 CGAAAAAGAGAAAGGCAAATAATGGG 59.689 38.462 0.00 0.00 0.00 4.00
277 278 4.743057 AAGAGAAAGGCAAATAATGGGC 57.257 40.909 0.00 0.00 0.00 5.36
278 279 3.986435 AGAGAAAGGCAAATAATGGGCT 58.014 40.909 0.00 0.00 42.29 5.19
279 280 3.956848 AGAGAAAGGCAAATAATGGGCTC 59.043 43.478 0.00 0.00 39.21 4.70
280 281 3.701040 GAGAAAGGCAAATAATGGGCTCA 59.299 43.478 0.00 0.00 39.21 4.26
281 282 3.448660 AGAAAGGCAAATAATGGGCTCAC 59.551 43.478 0.00 0.00 39.21 3.51
282 283 1.780503 AGGCAAATAATGGGCTCACC 58.219 50.000 0.00 0.00 34.45 4.02
292 293 0.181114 TGGGCTCACCATGACTATGC 59.819 55.000 0.00 0.00 46.80 3.14
293 294 0.471617 GGGCTCACCATGACTATGCT 59.528 55.000 0.00 0.00 39.85 3.79
294 295 1.694150 GGGCTCACCATGACTATGCTA 59.306 52.381 0.00 0.00 39.85 3.49
295 296 2.289320 GGGCTCACCATGACTATGCTAG 60.289 54.545 0.00 0.00 39.85 3.42
296 297 2.366916 GGCTCACCATGACTATGCTAGT 59.633 50.000 0.00 0.00 37.58 2.57
297 298 3.574396 GGCTCACCATGACTATGCTAGTA 59.426 47.826 0.00 0.00 35.86 1.82
298 299 4.039245 GGCTCACCATGACTATGCTAGTAA 59.961 45.833 0.00 0.00 35.86 2.24
299 300 5.279708 GGCTCACCATGACTATGCTAGTAAT 60.280 44.000 0.00 0.00 35.86 1.89
300 301 6.071334 GGCTCACCATGACTATGCTAGTAATA 60.071 42.308 0.00 0.00 35.86 0.98
301 302 7.364232 GGCTCACCATGACTATGCTAGTAATAT 60.364 40.741 0.00 0.00 35.86 1.28
302 303 8.687242 GCTCACCATGACTATGCTAGTAATATA 58.313 37.037 0.00 0.00 39.59 0.86
307 308 9.743057 CCATGACTATGCTAGTAATATAAGAGC 57.257 37.037 0.00 0.00 39.59 4.09
331 332 9.929180 AGCATTTATAGATCATTAAAGTAGCGA 57.071 29.630 0.00 0.00 0.00 4.93
338 339 7.484035 AGATCATTAAAGTAGCGATCCAAAC 57.516 36.000 0.00 0.00 34.34 2.93
339 340 5.712217 TCATTAAAGTAGCGATCCAAACG 57.288 39.130 0.00 0.00 0.00 3.60
384 388 5.066505 GGGAGTACAAGTCAAAATATGCCAG 59.933 44.000 0.00 0.00 0.00 4.85
387 391 4.178545 ACAAGTCAAAATATGCCAGTGC 57.821 40.909 0.00 0.00 38.26 4.40
498 502 5.410132 GCTAAGTTTTCTTCCTCCTTGACTC 59.590 44.000 0.00 0.00 40.91 3.36
501 505 1.657804 TTCTTCCTCCTTGACTCCCC 58.342 55.000 0.00 0.00 0.00 4.81
577 860 6.184580 TGACTCTACGAGAAGAAAGATCAC 57.815 41.667 0.00 0.00 33.32 3.06
581 864 3.495670 ACGAGAAGAAAGATCACTCCG 57.504 47.619 0.00 0.00 31.85 4.63
598 881 4.612412 GGTCCCGACACGTGGCAA 62.612 66.667 23.63 2.65 0.00 4.52
600 883 4.612412 TCCCGACACGTGGCAACC 62.612 66.667 23.63 3.28 0.00 3.77
612 895 3.216292 GCAACCAACCACGGTGCT 61.216 61.111 1.68 0.00 39.95 4.40
619 902 2.879233 AACCACGGTGCTCATCGGT 61.879 57.895 7.48 0.00 39.68 4.69
638 921 4.166011 GATGCCGAGGCGCACAAC 62.166 66.667 10.83 0.00 42.70 3.32
682 967 2.523902 CCCCACAGCCAAGCCAAA 60.524 61.111 0.00 0.00 0.00 3.28
713 1003 1.956170 CGTGCCATCCTATCACCGC 60.956 63.158 0.00 0.00 0.00 5.68
720 1010 3.941188 CCTATCACCGCGCCCCAT 61.941 66.667 0.00 0.00 0.00 4.00
911 1260 4.735132 GTACGCTGCCACGCCAGA 62.735 66.667 0.00 0.00 34.77 3.86
912 1261 4.435436 TACGCTGCCACGCCAGAG 62.435 66.667 0.00 2.21 38.41 3.35
952 1301 4.467084 GCCAGATCGAACGCCCCA 62.467 66.667 0.00 0.00 0.00 4.96
1332 1683 1.138883 TCTCTGATCGGTTTCGGCG 59.861 57.895 0.00 0.00 36.95 6.46
1342 1693 0.379316 GGTTTCGGCGGCGATTTTAT 59.621 50.000 35.04 0.00 0.00 1.40
1735 2087 3.987220 GCGTTTCCTGTGCAATTAATTGT 59.013 39.130 25.15 0.00 39.88 2.71
1737 2089 5.612276 GCGTTTCCTGTGCAATTAATTGTTG 60.612 40.000 25.15 14.29 39.88 3.33
1826 2178 3.181433 GGAAAAGGGGGAAGAAACTGAGA 60.181 47.826 0.00 0.00 0.00 3.27
1873 2225 9.996554 CCTTAATTAATTTCCTTTTTGTCCACT 57.003 29.630 5.91 0.00 0.00 4.00
1898 2250 6.902408 AGTAGTATAGGAGTACTTCAGTGCT 58.098 40.000 3.42 3.05 40.82 4.40
1914 2266 0.737367 TGCTGTGCGTATCAGTGCTC 60.737 55.000 5.37 0.00 35.60 4.26
2042 2394 0.765510 ACCGTCTTCTCCTTGCCTTT 59.234 50.000 0.00 0.00 0.00 3.11
2043 2395 1.143073 ACCGTCTTCTCCTTGCCTTTT 59.857 47.619 0.00 0.00 0.00 2.27
2044 2396 2.230660 CCGTCTTCTCCTTGCCTTTTT 58.769 47.619 0.00 0.00 0.00 1.94
2083 2435 3.081133 CGCATCCACTTCGTTCGG 58.919 61.111 0.00 0.00 0.00 4.30
2158 2510 4.142752 GCACTGACTTTTATTCCGGTAACC 60.143 45.833 0.00 0.00 0.00 2.85
2174 2526 3.366985 GGTAACCACTTGCAGTATTTGGC 60.367 47.826 0.00 0.00 0.00 4.52
2179 2574 4.526262 ACCACTTGCAGTATTTGGCATTAA 59.474 37.500 0.00 0.00 40.17 1.40
2198 2647 6.292596 GCATTAATTTTTGCCAGAAACGTTCA 60.293 34.615 0.00 0.00 32.66 3.18
2200 2649 5.655893 AATTTTTGCCAGAAACGTTCATG 57.344 34.783 0.00 3.30 0.00 3.07
2256 2705 8.610248 TTTTCTGAAATGGTGAGTCGTAAATA 57.390 30.769 3.31 0.00 0.00 1.40
2265 2714 7.136289 TGGTGAGTCGTAAATATTTCCAAAC 57.864 36.000 3.39 0.00 0.00 2.93
2297 2750 0.674895 GCGATGCTTTGACAGGGACT 60.675 55.000 0.00 0.00 43.88 3.85
2423 2887 8.001549 GCAAATTTGACAAATTTAACCTGTACG 58.998 33.333 29.34 18.46 46.34 3.67
2425 2889 5.752892 TTGACAAATTTAACCTGTACGCA 57.247 34.783 0.00 0.00 0.00 5.24
2666 3157 1.737236 CAGGCGCTGCACTACAAAATA 59.263 47.619 7.64 0.00 0.00 1.40
2691 3182 3.685756 GCAACCATTAGTACAACGCCTAA 59.314 43.478 0.00 0.00 0.00 2.69
2775 3266 0.677288 TTTCCGGATCACACGAGTGT 59.323 50.000 4.15 2.62 46.01 3.55
2790 3282 1.005037 GTGTGACGATGACCAGGCA 60.005 57.895 0.00 0.00 0.00 4.75
2829 3321 2.886523 AGGCGTTGTACAGTGTAGTGTA 59.113 45.455 2.39 0.00 31.46 2.90
2862 3354 0.458260 GGGCGTCACACAAAAAGGTT 59.542 50.000 0.00 0.00 0.00 3.50
2906 3398 7.434897 TCACAAACAGTTCATTCTGTAATTTGC 59.565 33.333 0.00 0.00 46.25 3.68
2913 3405 6.857964 AGTTCATTCTGTAATTTGCTTTCGTG 59.142 34.615 0.00 0.00 0.00 4.35
2922 3414 0.584396 TTGCTTTCGTGCGTAGGTTG 59.416 50.000 0.00 0.00 35.36 3.77
2923 3415 1.154469 GCTTTCGTGCGTAGGTTGC 60.154 57.895 0.00 0.00 0.00 4.17
2924 3416 1.495951 CTTTCGTGCGTAGGTTGCC 59.504 57.895 0.00 0.00 0.00 4.52
2925 3417 2.222953 CTTTCGTGCGTAGGTTGCCG 62.223 60.000 0.00 0.00 0.00 5.69
3092 3584 2.738521 CCGTCCGGTGCTGTCAAG 60.739 66.667 0.00 0.00 0.00 3.02
3192 3684 1.558756 AGATCCTTTGCCTCCTCTGTG 59.441 52.381 0.00 0.00 0.00 3.66
3403 3905 6.944557 ATTTGTTTTCAGCGTATTTTAGCC 57.055 33.333 0.00 0.00 0.00 3.93
3451 3960 2.033424 TCTCGGTCGCATAGAGTTGATG 59.967 50.000 0.00 0.00 33.96 3.07
3594 4177 9.884465 CAGAAAGTGAAAATTGTAGGAGTTAAG 57.116 33.333 0.00 0.00 0.00 1.85
3632 4217 9.294030 GCAAGTTTTGATTGATAATTACTCCAG 57.706 33.333 0.00 0.00 0.00 3.86
3703 4308 7.364522 TGACTCTGAATTGTTTATTTCCTCG 57.635 36.000 0.00 0.00 0.00 4.63
4104 4709 2.107141 CACCTCCGCGGATTCCTC 59.893 66.667 31.19 0.00 36.31 3.71
4593 5198 3.126831 AGCGATAGTGCAAGATGCTTAC 58.873 45.455 3.78 0.00 45.31 2.34
4594 5199 3.126831 GCGATAGTGCAAGATGCTTACT 58.873 45.455 3.78 2.61 45.31 2.24
4595 5200 3.557595 GCGATAGTGCAAGATGCTTACTT 59.442 43.478 3.78 0.00 45.31 2.24
4596 5201 4.745125 GCGATAGTGCAAGATGCTTACTTA 59.255 41.667 3.78 0.00 45.31 2.24
4612 5217 7.548097 TGCTTACTTAGAGAGATGGTTACAAG 58.452 38.462 0.00 0.00 0.00 3.16
4650 5271 4.993029 AAGAGTCATAGAACTAGCGCTT 57.007 40.909 18.68 0.00 0.00 4.68
4670 5292 7.921745 AGCGCTTAATGTTTAGTTTGGTTTTAA 59.078 29.630 2.64 0.00 0.00 1.52
4702 5324 9.340695 TGAAAATATGAAATTGCAGTAACTTCG 57.659 29.630 0.00 0.00 0.00 3.79
4715 5337 7.600065 TGCAGTAACTTCGATTCTACTTAAGT 58.400 34.615 13.68 13.68 31.94 2.24
4726 5348 6.140895 CGATTCTACTTAAGTGTGCAGATACG 59.859 42.308 18.56 15.01 0.00 3.06
4727 5349 6.505044 TTCTACTTAAGTGTGCAGATACGA 57.495 37.500 18.56 0.00 0.00 3.43
4731 5353 5.907207 ACTTAAGTGTGCAGATACGATCAT 58.093 37.500 7.48 0.00 0.00 2.45
4734 5356 8.144478 ACTTAAGTGTGCAGATACGATCATAAT 58.856 33.333 7.48 0.00 0.00 1.28
4771 5394 2.904905 GCGTGTATGGCCCCACTA 59.095 61.111 0.00 0.00 0.00 2.74
4794 5417 2.045926 GAGTGATGGCGCTTGGGT 60.046 61.111 7.64 0.00 34.37 4.51
4888 5513 5.009510 GCACAAAAACCCCTTGCATTTTTAT 59.990 36.000 7.24 0.00 34.58 1.40
4892 5517 5.703978 AAACCCCTTGCATTTTTATTTGC 57.296 34.783 0.00 0.00 39.33 3.68
4893 5518 3.333804 ACCCCTTGCATTTTTATTTGCG 58.666 40.909 0.00 0.00 41.80 4.85
4910 5536 0.955905 GCGGAAAAAGCCAACCACTA 59.044 50.000 0.00 0.00 0.00 2.74
4918 5544 7.333323 GGAAAAAGCCAACCACTATACTACTA 58.667 38.462 0.00 0.00 0.00 1.82
4919 5545 7.494952 GGAAAAAGCCAACCACTATACTACTAG 59.505 40.741 0.00 0.00 0.00 2.57
4956 5582 5.883503 AACACAAAAAGGTTAGAACACGA 57.116 34.783 0.00 0.00 0.00 4.35
4975 5601 1.542187 AACCGGTCTAGCCACTCCAC 61.542 60.000 8.04 0.00 36.97 4.02
4978 5604 0.681564 CGGTCTAGCCACTCCACTCT 60.682 60.000 4.43 0.00 36.97 3.24
4983 5609 2.563179 TCTAGCCACTCCACTCTTTCAC 59.437 50.000 0.00 0.00 0.00 3.18
4993 5619 2.411547 CCACTCTTTCACGTTCGAATGC 60.412 50.000 17.24 0.00 0.00 3.56
5112 5738 0.859232 CAAGTCTCAAACCCACGACG 59.141 55.000 0.00 0.00 0.00 5.12
5134 5760 3.334463 GCTAGCATACAAGCCGCC 58.666 61.111 10.63 0.00 34.23 6.13
5156 5782 4.098960 CCCTAGCCACTACAATCTTTACGA 59.901 45.833 0.00 0.00 0.00 3.43
5157 5783 5.394883 CCCTAGCCACTACAATCTTTACGAA 60.395 44.000 0.00 0.00 0.00 3.85
5186 5816 9.613428 TTTTTAGACATCCTACAATCTACATGG 57.387 33.333 0.00 0.00 0.00 3.66
5187 5817 5.220710 AGACATCCTACAATCTACATGGC 57.779 43.478 0.00 0.00 0.00 4.40
5188 5818 4.040952 AGACATCCTACAATCTACATGGCC 59.959 45.833 0.00 0.00 0.00 5.36
5189 5819 3.976654 ACATCCTACAATCTACATGGCCT 59.023 43.478 3.32 0.00 0.00 5.19
5190 5820 5.155161 ACATCCTACAATCTACATGGCCTA 58.845 41.667 3.32 0.00 0.00 3.93
5191 5821 5.787494 ACATCCTACAATCTACATGGCCTAT 59.213 40.000 3.32 0.00 0.00 2.57
5192 5822 6.959954 ACATCCTACAATCTACATGGCCTATA 59.040 38.462 3.32 0.00 0.00 1.31
5193 5823 7.625280 ACATCCTACAATCTACATGGCCTATAT 59.375 37.037 3.32 0.00 0.00 0.86
5194 5824 7.423844 TCCTACAATCTACATGGCCTATATG 57.576 40.000 3.32 1.40 0.00 1.78
5195 5825 7.189087 TCCTACAATCTACATGGCCTATATGA 58.811 38.462 3.32 0.00 0.00 2.15
5196 5826 7.846311 TCCTACAATCTACATGGCCTATATGAT 59.154 37.037 3.32 0.00 0.00 2.45
5197 5827 7.930325 CCTACAATCTACATGGCCTATATGATG 59.070 40.741 3.32 0.00 0.00 3.07
5198 5828 7.500629 ACAATCTACATGGCCTATATGATGA 57.499 36.000 3.32 4.25 0.00 2.92
5199 5829 7.334090 ACAATCTACATGGCCTATATGATGAC 58.666 38.462 3.32 0.00 0.00 3.06
5200 5830 5.582689 TCTACATGGCCTATATGATGACG 57.417 43.478 3.32 0.00 0.00 4.35
5201 5831 5.261216 TCTACATGGCCTATATGATGACGA 58.739 41.667 3.32 0.00 0.00 4.20
5202 5832 4.193826 ACATGGCCTATATGATGACGAC 57.806 45.455 3.32 0.00 0.00 4.34
5203 5833 3.182182 CATGGCCTATATGATGACGACG 58.818 50.000 3.32 0.00 0.00 5.12
5204 5834 1.067846 TGGCCTATATGATGACGACGC 60.068 52.381 3.32 0.00 0.00 5.19
5205 5835 1.630148 GCCTATATGATGACGACGCC 58.370 55.000 0.00 0.00 0.00 5.68
5206 5836 1.896345 CCTATATGATGACGACGCCG 58.104 55.000 0.00 0.00 42.50 6.46
5216 5846 4.478195 CGACGCCGTCATCTTCTT 57.522 55.556 18.40 0.00 32.09 2.52
5217 5847 3.616935 CGACGCCGTCATCTTCTTA 57.383 52.632 18.40 0.00 32.09 2.10
5218 5848 1.904144 CGACGCCGTCATCTTCTTAA 58.096 50.000 18.40 0.00 32.09 1.85
5219 5849 2.256174 CGACGCCGTCATCTTCTTAAA 58.744 47.619 18.40 0.00 32.09 1.52
5220 5850 2.664568 CGACGCCGTCATCTTCTTAAAA 59.335 45.455 18.40 0.00 32.09 1.52
5221 5851 3.481467 CGACGCCGTCATCTTCTTAAAAC 60.481 47.826 18.40 0.00 32.09 2.43
5222 5852 2.740447 ACGCCGTCATCTTCTTAAAACC 59.260 45.455 0.00 0.00 0.00 3.27
5223 5853 3.000727 CGCCGTCATCTTCTTAAAACCT 58.999 45.455 0.00 0.00 0.00 3.50
5224 5854 4.178540 CGCCGTCATCTTCTTAAAACCTA 58.821 43.478 0.00 0.00 0.00 3.08
5225 5855 4.267928 CGCCGTCATCTTCTTAAAACCTAG 59.732 45.833 0.00 0.00 0.00 3.02
5226 5856 4.034163 GCCGTCATCTTCTTAAAACCTAGC 59.966 45.833 0.00 0.00 0.00 3.42
5227 5857 4.571176 CCGTCATCTTCTTAAAACCTAGCC 59.429 45.833 0.00 0.00 0.00 3.93
5228 5858 4.267928 CGTCATCTTCTTAAAACCTAGCCG 59.732 45.833 0.00 0.00 0.00 5.52
5229 5859 4.034163 GTCATCTTCTTAAAACCTAGCCGC 59.966 45.833 0.00 0.00 0.00 6.53
5230 5860 2.613691 TCTTCTTAAAACCTAGCCGCG 58.386 47.619 0.00 0.00 0.00 6.46
5231 5861 2.231964 TCTTCTTAAAACCTAGCCGCGA 59.768 45.455 8.23 0.00 0.00 5.87
5232 5862 2.000429 TCTTAAAACCTAGCCGCGAC 58.000 50.000 8.23 0.00 0.00 5.19
5233 5863 0.643820 CTTAAAACCTAGCCGCGACG 59.356 55.000 8.23 0.00 0.00 5.12
5234 5864 0.243365 TTAAAACCTAGCCGCGACGA 59.757 50.000 8.23 0.00 0.00 4.20
5235 5865 0.179156 TAAAACCTAGCCGCGACGAG 60.179 55.000 8.23 0.00 0.00 4.18
5236 5866 2.830704 AAAACCTAGCCGCGACGAGG 62.831 60.000 19.37 19.37 35.05 4.63
5238 5868 3.823330 CCTAGCCGCGACGAGGTT 61.823 66.667 19.13 15.66 0.00 3.50
5239 5869 2.579787 CTAGCCGCGACGAGGTTG 60.580 66.667 19.13 5.95 0.00 3.77
5240 5870 3.047718 CTAGCCGCGACGAGGTTGA 62.048 63.158 19.13 4.02 0.00 3.18
5241 5871 3.332493 TAGCCGCGACGAGGTTGAC 62.332 63.158 19.13 2.19 0.00 3.18
5242 5872 4.719369 GCCGCGACGAGGTTGACT 62.719 66.667 19.13 0.00 0.00 3.41
5243 5873 2.504244 CCGCGACGAGGTTGACTC 60.504 66.667 8.23 0.00 43.02 3.36
5244 5874 2.504244 CGCGACGAGGTTGACTCC 60.504 66.667 0.00 0.00 43.57 3.85
5245 5875 2.126031 GCGACGAGGTTGACTCCC 60.126 66.667 0.00 0.00 43.57 4.30
5246 5876 2.637383 GCGACGAGGTTGACTCCCT 61.637 63.158 0.00 0.00 43.57 4.20
5247 5877 1.213013 CGACGAGGTTGACTCCCTG 59.787 63.158 0.00 0.00 43.57 4.45
5248 5878 1.079750 GACGAGGTTGACTCCCTGC 60.080 63.158 0.00 0.00 43.57 4.85
5249 5879 1.534235 ACGAGGTTGACTCCCTGCT 60.534 57.895 0.00 0.00 43.57 4.24
5250 5880 1.079543 CGAGGTTGACTCCCTGCTG 60.080 63.158 0.00 0.00 43.57 4.41
5251 5881 1.376553 GAGGTTGACTCCCTGCTGC 60.377 63.158 0.00 0.00 40.49 5.25
5252 5882 2.116983 GAGGTTGACTCCCTGCTGCA 62.117 60.000 0.88 0.88 40.49 4.41
5253 5883 1.968540 GGTTGACTCCCTGCTGCAC 60.969 63.158 0.00 0.00 0.00 4.57
5254 5884 1.227943 GTTGACTCCCTGCTGCACA 60.228 57.895 0.00 0.00 0.00 4.57
5255 5885 0.607489 GTTGACTCCCTGCTGCACAT 60.607 55.000 0.00 0.00 0.00 3.21
5256 5886 0.111061 TTGACTCCCTGCTGCACATT 59.889 50.000 0.00 0.00 0.00 2.71
5257 5887 0.321919 TGACTCCCTGCTGCACATTC 60.322 55.000 0.00 0.00 0.00 2.67
5258 5888 0.035630 GACTCCCTGCTGCACATTCT 60.036 55.000 0.00 0.00 0.00 2.40
5259 5889 1.208052 GACTCCCTGCTGCACATTCTA 59.792 52.381 0.00 0.00 0.00 2.10
5260 5890 1.209019 ACTCCCTGCTGCACATTCTAG 59.791 52.381 0.00 0.00 0.00 2.43
5261 5891 0.543277 TCCCTGCTGCACATTCTAGG 59.457 55.000 0.00 0.00 0.00 3.02
5262 5892 0.254178 CCCTGCTGCACATTCTAGGT 59.746 55.000 0.00 0.00 0.00 3.08
5263 5893 1.376543 CCTGCTGCACATTCTAGGTG 58.623 55.000 0.00 0.00 39.25 4.00
5264 5894 1.065926 CCTGCTGCACATTCTAGGTGA 60.066 52.381 0.00 0.00 38.54 4.02
5265 5895 2.005451 CTGCTGCACATTCTAGGTGAC 58.995 52.381 0.00 0.00 38.54 3.67
5267 5897 2.038952 TGCTGCACATTCTAGGTGACTT 59.961 45.455 0.00 0.00 43.67 3.01
5268 5898 2.675348 GCTGCACATTCTAGGTGACTTC 59.325 50.000 0.00 0.00 43.67 3.01
5269 5899 2.926200 CTGCACATTCTAGGTGACTTCG 59.074 50.000 2.19 0.00 43.67 3.79
5270 5900 2.271800 GCACATTCTAGGTGACTTCGG 58.728 52.381 2.19 0.00 43.67 4.30
5271 5901 2.094182 GCACATTCTAGGTGACTTCGGA 60.094 50.000 2.19 0.00 43.67 4.55
5272 5902 3.616560 GCACATTCTAGGTGACTTCGGAA 60.617 47.826 2.19 0.00 43.67 4.30
5273 5903 4.177026 CACATTCTAGGTGACTTCGGAAG 58.823 47.826 15.96 15.96 43.67 3.46
5274 5904 4.082190 CACATTCTAGGTGACTTCGGAAGA 60.082 45.833 23.74 0.00 43.67 2.87
5275 5905 4.158764 ACATTCTAGGTGACTTCGGAAGAG 59.841 45.833 23.74 9.74 43.69 2.85
5276 5906 2.093106 TCTAGGTGACTTCGGAAGAGC 58.907 52.381 23.74 14.78 43.69 4.09
5277 5907 1.819288 CTAGGTGACTTCGGAAGAGCA 59.181 52.381 23.74 16.95 43.69 4.26
5278 5908 1.048601 AGGTGACTTCGGAAGAGCAA 58.951 50.000 23.74 3.90 43.69 3.91
5279 5909 1.149148 GGTGACTTCGGAAGAGCAAC 58.851 55.000 23.74 18.18 43.69 4.17
5280 5910 1.149148 GTGACTTCGGAAGAGCAACC 58.851 55.000 23.74 7.30 43.69 3.77
5293 5923 4.776322 CAACCGGGCTCCGCATCA 62.776 66.667 6.32 0.00 46.86 3.07
5294 5924 4.028490 AACCGGGCTCCGCATCAA 62.028 61.111 6.32 0.00 46.86 2.57
5295 5925 4.778143 ACCGGGCTCCGCATCAAC 62.778 66.667 6.32 0.00 46.86 3.18
5298 5928 4.424711 GGGCTCCGCATCAACCCA 62.425 66.667 0.00 0.00 40.52 4.51
5299 5929 2.825836 GGCTCCGCATCAACCCAG 60.826 66.667 0.00 0.00 0.00 4.45
5300 5930 3.512516 GCTCCGCATCAACCCAGC 61.513 66.667 0.00 0.00 0.00 4.85
5301 5931 2.270205 CTCCGCATCAACCCAGCT 59.730 61.111 0.00 0.00 0.00 4.24
5302 5932 1.522092 CTCCGCATCAACCCAGCTA 59.478 57.895 0.00 0.00 0.00 3.32
5303 5933 0.107703 CTCCGCATCAACCCAGCTAA 60.108 55.000 0.00 0.00 0.00 3.09
5304 5934 0.326595 TCCGCATCAACCCAGCTAAA 59.673 50.000 0.00 0.00 0.00 1.85
5305 5935 1.064758 TCCGCATCAACCCAGCTAAAT 60.065 47.619 0.00 0.00 0.00 1.40
5306 5936 1.334869 CCGCATCAACCCAGCTAAATC 59.665 52.381 0.00 0.00 0.00 2.17
5307 5937 1.003545 CGCATCAACCCAGCTAAATCG 60.004 52.381 0.00 0.00 0.00 3.34
5308 5938 2.288666 GCATCAACCCAGCTAAATCGA 58.711 47.619 0.00 0.00 0.00 3.59
5309 5939 2.032178 GCATCAACCCAGCTAAATCGAC 59.968 50.000 0.00 0.00 0.00 4.20
5310 5940 2.004583 TCAACCCAGCTAAATCGACG 57.995 50.000 0.00 0.00 0.00 5.12
5311 5941 1.006832 CAACCCAGCTAAATCGACGG 58.993 55.000 0.00 0.00 0.00 4.79
5312 5942 0.611714 AACCCAGCTAAATCGACGGT 59.388 50.000 0.00 0.00 0.00 4.83
5313 5943 0.175073 ACCCAGCTAAATCGACGGTC 59.825 55.000 0.00 0.00 0.00 4.79
5314 5944 0.460311 CCCAGCTAAATCGACGGTCT 59.540 55.000 6.57 0.00 0.00 3.85
5315 5945 1.536284 CCCAGCTAAATCGACGGTCTC 60.536 57.143 6.57 0.00 0.00 3.36
5316 5946 1.536284 CCAGCTAAATCGACGGTCTCC 60.536 57.143 6.57 0.00 0.00 3.71
5317 5947 0.745468 AGCTAAATCGACGGTCTCCC 59.255 55.000 6.57 0.00 0.00 4.30
5318 5948 0.745468 GCTAAATCGACGGTCTCCCT 59.255 55.000 6.57 0.00 0.00 4.20
5319 5949 1.269154 GCTAAATCGACGGTCTCCCTC 60.269 57.143 6.57 0.00 0.00 4.30
5320 5950 2.022195 CTAAATCGACGGTCTCCCTCA 58.978 52.381 6.57 0.00 0.00 3.86
5321 5951 1.486211 AAATCGACGGTCTCCCTCAT 58.514 50.000 6.57 0.00 0.00 2.90
5322 5952 1.033574 AATCGACGGTCTCCCTCATC 58.966 55.000 6.57 0.00 0.00 2.92
5323 5953 0.824182 ATCGACGGTCTCCCTCATCC 60.824 60.000 6.57 0.00 0.00 3.51
5324 5954 2.835705 CGACGGTCTCCCTCATCCG 61.836 68.421 6.57 0.00 46.98 4.18
5326 5956 3.617368 CGGTCTCCCTCATCCGTT 58.383 61.111 0.00 0.00 38.45 4.44
5327 5957 1.141881 CGGTCTCCCTCATCCGTTG 59.858 63.158 0.00 0.00 38.45 4.10
5328 5958 1.153349 GGTCTCCCTCATCCGTTGC 60.153 63.158 0.00 0.00 0.00 4.17
5329 5959 1.519455 GTCTCCCTCATCCGTTGCG 60.519 63.158 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.799366 AGTTGACCACACATCGTTAACA 58.201 40.909 6.39 0.00 32.52 2.41
1 2 4.986659 ACTAGTTGACCACACATCGTTAAC 59.013 41.667 0.00 0.00 0.00 2.01
2 3 5.204409 ACTAGTTGACCACACATCGTTAA 57.796 39.130 0.00 0.00 0.00 2.01
3 4 4.614306 CGACTAGTTGACCACACATCGTTA 60.614 45.833 3.81 0.00 0.00 3.18
4 5 3.650139 GACTAGTTGACCACACATCGTT 58.350 45.455 0.00 0.00 0.00 3.85
5 6 2.351447 CGACTAGTTGACCACACATCGT 60.351 50.000 3.81 0.00 0.00 3.73
6 7 2.251040 CGACTAGTTGACCACACATCG 58.749 52.381 3.81 0.00 0.00 3.84
7 8 2.987149 CACGACTAGTTGACCACACATC 59.013 50.000 17.37 0.00 0.00 3.06
8 9 2.866460 GCACGACTAGTTGACCACACAT 60.866 50.000 17.37 0.00 0.00 3.21
9 10 1.537348 GCACGACTAGTTGACCACACA 60.537 52.381 17.37 0.00 0.00 3.72
10 11 1.137513 GCACGACTAGTTGACCACAC 58.862 55.000 17.37 0.00 0.00 3.82
11 12 1.000607 GAGCACGACTAGTTGACCACA 60.001 52.381 17.37 0.00 0.00 4.17
12 13 1.669211 GGAGCACGACTAGTTGACCAC 60.669 57.143 17.37 5.59 0.00 4.16
13 14 0.601558 GGAGCACGACTAGTTGACCA 59.398 55.000 17.37 0.00 0.00 4.02
14 15 0.108756 GGGAGCACGACTAGTTGACC 60.109 60.000 17.37 12.76 0.00 4.02
15 16 0.889306 AGGGAGCACGACTAGTTGAC 59.111 55.000 17.37 8.28 0.00 3.18
16 17 1.174783 GAGGGAGCACGACTAGTTGA 58.825 55.000 17.37 0.00 0.00 3.18
17 18 0.888619 TGAGGGAGCACGACTAGTTG 59.111 55.000 8.69 8.69 0.00 3.16
18 19 1.629043 TTGAGGGAGCACGACTAGTT 58.371 50.000 0.00 0.00 0.00 2.24
19 20 1.853963 ATTGAGGGAGCACGACTAGT 58.146 50.000 0.00 0.00 0.00 2.57
20 21 2.166459 TCAATTGAGGGAGCACGACTAG 59.834 50.000 3.38 0.00 0.00 2.57
21 22 2.176045 TCAATTGAGGGAGCACGACTA 58.824 47.619 3.38 0.00 0.00 2.59
22 23 0.976641 TCAATTGAGGGAGCACGACT 59.023 50.000 3.38 0.00 0.00 4.18
23 24 1.808411 TTCAATTGAGGGAGCACGAC 58.192 50.000 8.41 0.00 0.00 4.34
24 25 2.559698 TTTCAATTGAGGGAGCACGA 57.440 45.000 8.41 0.00 0.00 4.35
25 26 3.728864 CGATTTTCAATTGAGGGAGCACG 60.729 47.826 8.41 6.22 0.00 5.34
26 27 3.440173 TCGATTTTCAATTGAGGGAGCAC 59.560 43.478 8.41 0.00 0.00 4.40
27 28 3.440173 GTCGATTTTCAATTGAGGGAGCA 59.560 43.478 8.41 0.00 0.00 4.26
28 29 3.181496 GGTCGATTTTCAATTGAGGGAGC 60.181 47.826 8.41 8.52 0.00 4.70
29 30 4.265073 AGGTCGATTTTCAATTGAGGGAG 58.735 43.478 8.41 1.49 0.00 4.30
30 31 4.261801 GAGGTCGATTTTCAATTGAGGGA 58.738 43.478 8.41 0.00 0.00 4.20
31 32 4.009675 TGAGGTCGATTTTCAATTGAGGG 58.990 43.478 8.41 0.00 0.00 4.30
32 33 5.824904 ATGAGGTCGATTTTCAATTGAGG 57.175 39.130 8.41 0.00 0.00 3.86
33 34 8.454106 ACTTTATGAGGTCGATTTTCAATTGAG 58.546 33.333 8.41 0.00 0.00 3.02
34 35 8.236586 CACTTTATGAGGTCGATTTTCAATTGA 58.763 33.333 3.38 3.38 0.00 2.57
35 36 7.485913 CCACTTTATGAGGTCGATTTTCAATTG 59.514 37.037 0.00 0.00 0.00 2.32
36 37 7.362920 CCCACTTTATGAGGTCGATTTTCAATT 60.363 37.037 0.00 0.00 0.00 2.32
37 38 6.095440 CCCACTTTATGAGGTCGATTTTCAAT 59.905 38.462 0.00 0.00 0.00 2.57
38 39 5.414454 CCCACTTTATGAGGTCGATTTTCAA 59.586 40.000 0.00 0.00 0.00 2.69
39 40 4.941263 CCCACTTTATGAGGTCGATTTTCA 59.059 41.667 0.00 0.00 0.00 2.69
40 41 4.335594 CCCCACTTTATGAGGTCGATTTTC 59.664 45.833 0.00 0.00 0.00 2.29
41 42 4.263771 ACCCCACTTTATGAGGTCGATTTT 60.264 41.667 0.00 0.00 0.00 1.82
42 43 3.265995 ACCCCACTTTATGAGGTCGATTT 59.734 43.478 0.00 0.00 0.00 2.17
43 44 2.844348 ACCCCACTTTATGAGGTCGATT 59.156 45.455 0.00 0.00 0.00 3.34
44 45 2.434702 GACCCCACTTTATGAGGTCGAT 59.565 50.000 0.00 0.00 37.83 3.59
45 46 1.829222 GACCCCACTTTATGAGGTCGA 59.171 52.381 0.00 0.00 37.83 4.20
46 47 1.134491 GGACCCCACTTTATGAGGTCG 60.134 57.143 2.03 0.00 46.52 4.79
47 48 1.913419 TGGACCCCACTTTATGAGGTC 59.087 52.381 0.00 0.00 45.15 3.85
48 49 2.053747 TGGACCCCACTTTATGAGGT 57.946 50.000 0.00 0.00 0.00 3.85
49 50 3.203040 AGAATGGACCCCACTTTATGAGG 59.797 47.826 0.00 0.00 35.80 3.86
50 51 4.510167 AGAATGGACCCCACTTTATGAG 57.490 45.455 0.00 0.00 35.80 2.90
51 52 4.946160 AAGAATGGACCCCACTTTATGA 57.054 40.909 0.00 0.00 35.80 2.15
52 53 5.329035 CAAAGAATGGACCCCACTTTATG 57.671 43.478 0.00 0.00 35.80 1.90
64 65 5.279472 GCTATGCGCAACCAAAGAATGGA 62.279 47.826 17.11 0.00 45.17 3.41
65 66 3.049785 GCTATGCGCAACCAAAGAATGG 61.050 50.000 17.11 0.00 46.65 3.16
66 67 2.187707 GCTATGCGCAACCAAAGAATG 58.812 47.619 17.11 0.00 38.92 2.67
67 68 2.566952 GCTATGCGCAACCAAAGAAT 57.433 45.000 17.11 0.00 38.92 2.40
102 103 1.341606 GTCAAGAAGTCCTCGCGAAG 58.658 55.000 11.33 3.66 0.00 3.79
103 104 0.038526 GGTCAAGAAGTCCTCGCGAA 60.039 55.000 11.33 0.00 0.00 4.70
104 105 0.894184 AGGTCAAGAAGTCCTCGCGA 60.894 55.000 9.26 9.26 29.03 5.87
105 106 0.734253 CAGGTCAAGAAGTCCTCGCG 60.734 60.000 0.00 0.00 33.19 5.87
106 107 0.603569 TCAGGTCAAGAAGTCCTCGC 59.396 55.000 0.00 0.00 33.19 5.03
107 108 3.386768 TTTCAGGTCAAGAAGTCCTCG 57.613 47.619 0.00 0.00 33.19 4.63
108 109 4.273724 GTGTTTTCAGGTCAAGAAGTCCTC 59.726 45.833 0.00 0.00 33.19 3.71
109 110 4.200092 GTGTTTTCAGGTCAAGAAGTCCT 58.800 43.478 0.00 0.00 36.09 3.85
110 111 3.945285 TGTGTTTTCAGGTCAAGAAGTCC 59.055 43.478 0.00 0.00 0.00 3.85
111 112 5.560966 TTGTGTTTTCAGGTCAAGAAGTC 57.439 39.130 0.00 0.00 0.00 3.01
112 113 5.220854 CGATTGTGTTTTCAGGTCAAGAAGT 60.221 40.000 0.00 0.00 0.00 3.01
113 114 5.007626 TCGATTGTGTTTTCAGGTCAAGAAG 59.992 40.000 0.00 0.00 0.00 2.85
114 115 4.878971 TCGATTGTGTTTTCAGGTCAAGAA 59.121 37.500 0.00 0.00 0.00 2.52
115 116 4.447290 TCGATTGTGTTTTCAGGTCAAGA 58.553 39.130 0.00 0.00 0.00 3.02
116 117 4.811555 TCGATTGTGTTTTCAGGTCAAG 57.188 40.909 0.00 0.00 0.00 3.02
117 118 4.023279 CCATCGATTGTGTTTTCAGGTCAA 60.023 41.667 0.00 0.00 0.00 3.18
118 119 3.501828 CCATCGATTGTGTTTTCAGGTCA 59.498 43.478 0.00 0.00 0.00 4.02
119 120 3.502211 ACCATCGATTGTGTTTTCAGGTC 59.498 43.478 0.57 0.00 0.00 3.85
120 121 3.486383 ACCATCGATTGTGTTTTCAGGT 58.514 40.909 0.57 0.00 0.00 4.00
121 122 4.503741 AACCATCGATTGTGTTTTCAGG 57.496 40.909 2.45 0.00 0.00 3.86
122 123 6.073276 TGAGTAACCATCGATTGTGTTTTCAG 60.073 38.462 2.45 0.00 0.00 3.02
123 124 5.760743 TGAGTAACCATCGATTGTGTTTTCA 59.239 36.000 2.45 8.33 0.00 2.69
124 125 6.077838 GTGAGTAACCATCGATTGTGTTTTC 58.922 40.000 2.45 6.30 0.00 2.29
125 126 5.529430 TGTGAGTAACCATCGATTGTGTTTT 59.471 36.000 2.45 0.00 0.00 2.43
126 127 5.060506 TGTGAGTAACCATCGATTGTGTTT 58.939 37.500 2.45 0.00 0.00 2.83
127 128 4.637276 TGTGAGTAACCATCGATTGTGTT 58.363 39.130 2.45 6.45 0.00 3.32
128 129 4.245660 CTGTGAGTAACCATCGATTGTGT 58.754 43.478 2.45 0.00 0.00 3.72
129 130 4.245660 ACTGTGAGTAACCATCGATTGTG 58.754 43.478 2.45 0.00 0.00 3.33
130 131 4.537135 ACTGTGAGTAACCATCGATTGT 57.463 40.909 0.00 0.00 0.00 2.71
131 132 4.929211 TCAACTGTGAGTAACCATCGATTG 59.071 41.667 0.00 0.00 0.00 2.67
132 133 5.147330 TCAACTGTGAGTAACCATCGATT 57.853 39.130 0.00 0.00 0.00 3.34
133 134 4.748892 CTCAACTGTGAGTAACCATCGAT 58.251 43.478 0.00 0.00 45.44 3.59
134 135 4.174411 CTCAACTGTGAGTAACCATCGA 57.826 45.455 0.00 0.00 45.44 3.59
146 147 5.936686 AATGACTCACAATCTCAACTGTG 57.063 39.130 0.00 0.00 43.53 3.66
147 148 6.949352 AAAATGACTCACAATCTCAACTGT 57.051 33.333 0.00 0.00 0.00 3.55
169 170 5.885449 AATTGGGTTGGATGAGTGAAAAA 57.115 34.783 0.00 0.00 0.00 1.94
170 171 5.885449 AAATTGGGTTGGATGAGTGAAAA 57.115 34.783 0.00 0.00 0.00 2.29
171 172 8.837099 ATATAAATTGGGTTGGATGAGTGAAA 57.163 30.769 0.00 0.00 0.00 2.69
172 173 8.837099 AATATAAATTGGGTTGGATGAGTGAA 57.163 30.769 0.00 0.00 0.00 3.18
173 174 8.694540 CAAATATAAATTGGGTTGGATGAGTGA 58.305 33.333 0.00 0.00 0.00 3.41
174 175 7.927629 CCAAATATAAATTGGGTTGGATGAGTG 59.072 37.037 11.18 0.00 42.95 3.51
175 176 7.843760 TCCAAATATAAATTGGGTTGGATGAGT 59.156 33.333 16.48 0.00 45.97 3.41
176 177 8.248904 TCCAAATATAAATTGGGTTGGATGAG 57.751 34.615 16.48 0.00 45.97 2.90
177 178 7.843760 ACTCCAAATATAAATTGGGTTGGATGA 59.156 33.333 16.48 0.12 45.97 2.92
178 179 7.927629 CACTCCAAATATAAATTGGGTTGGATG 59.072 37.037 16.48 2.17 45.97 3.51
179 180 7.843760 TCACTCCAAATATAAATTGGGTTGGAT 59.156 33.333 16.48 0.00 45.97 3.41
180 181 7.185565 TCACTCCAAATATAAATTGGGTTGGA 58.814 34.615 16.48 3.16 45.97 3.53
181 182 7.416964 TCACTCCAAATATAAATTGGGTTGG 57.583 36.000 16.48 0.00 45.97 3.77
182 183 9.965824 GTATCACTCCAAATATAAATTGGGTTG 57.034 33.333 16.48 13.93 45.97 3.77
183 184 9.936329 AGTATCACTCCAAATATAAATTGGGTT 57.064 29.630 16.48 5.47 45.97 4.11
184 185 9.354673 CAGTATCACTCCAAATATAAATTGGGT 57.645 33.333 16.48 11.93 45.97 4.51
185 186 9.573166 TCAGTATCACTCCAAATATAAATTGGG 57.427 33.333 16.48 11.48 45.97 4.12
212 213 5.444663 TTTTTGTTTTGCAGGTGCTTTTT 57.555 30.435 3.18 0.00 42.66 1.94
232 233 4.571372 TCGGTTATCTTTTGCGGTTTTT 57.429 36.364 0.00 0.00 0.00 1.94
233 234 4.571372 TTCGGTTATCTTTTGCGGTTTT 57.429 36.364 0.00 0.00 0.00 2.43
234 235 4.571372 TTTCGGTTATCTTTTGCGGTTT 57.429 36.364 0.00 0.00 0.00 3.27
235 236 4.571372 TTTTCGGTTATCTTTTGCGGTT 57.429 36.364 0.00 0.00 0.00 4.44
236 237 4.276431 TCTTTTTCGGTTATCTTTTGCGGT 59.724 37.500 0.00 0.00 0.00 5.68
237 238 4.789784 TCTTTTTCGGTTATCTTTTGCGG 58.210 39.130 0.00 0.00 0.00 5.69
238 239 5.685841 TCTCTTTTTCGGTTATCTTTTGCG 58.314 37.500 0.00 0.00 0.00 4.85
239 240 7.114953 CCTTTCTCTTTTTCGGTTATCTTTTGC 59.885 37.037 0.00 0.00 0.00 3.68
240 241 7.114953 GCCTTTCTCTTTTTCGGTTATCTTTTG 59.885 37.037 0.00 0.00 0.00 2.44
241 242 7.145985 GCCTTTCTCTTTTTCGGTTATCTTTT 58.854 34.615 0.00 0.00 0.00 2.27
242 243 6.264518 TGCCTTTCTCTTTTTCGGTTATCTTT 59.735 34.615 0.00 0.00 0.00 2.52
243 244 5.768164 TGCCTTTCTCTTTTTCGGTTATCTT 59.232 36.000 0.00 0.00 0.00 2.40
244 245 5.313712 TGCCTTTCTCTTTTTCGGTTATCT 58.686 37.500 0.00 0.00 0.00 1.98
245 246 5.622770 TGCCTTTCTCTTTTTCGGTTATC 57.377 39.130 0.00 0.00 0.00 1.75
246 247 6.399639 TTTGCCTTTCTCTTTTTCGGTTAT 57.600 33.333 0.00 0.00 0.00 1.89
247 248 5.838531 TTTGCCTTTCTCTTTTTCGGTTA 57.161 34.783 0.00 0.00 0.00 2.85
248 249 4.729227 TTTGCCTTTCTCTTTTTCGGTT 57.271 36.364 0.00 0.00 0.00 4.44
249 250 4.937201 ATTTGCCTTTCTCTTTTTCGGT 57.063 36.364 0.00 0.00 0.00 4.69
250 251 6.311200 CCATTATTTGCCTTTCTCTTTTTCGG 59.689 38.462 0.00 0.00 0.00 4.30
251 252 6.311200 CCCATTATTTGCCTTTCTCTTTTTCG 59.689 38.462 0.00 0.00 0.00 3.46
252 253 6.092670 GCCCATTATTTGCCTTTCTCTTTTTC 59.907 38.462 0.00 0.00 0.00 2.29
253 254 5.939883 GCCCATTATTTGCCTTTCTCTTTTT 59.060 36.000 0.00 0.00 0.00 1.94
254 255 5.249163 AGCCCATTATTTGCCTTTCTCTTTT 59.751 36.000 0.00 0.00 0.00 2.27
255 256 4.779489 AGCCCATTATTTGCCTTTCTCTTT 59.221 37.500 0.00 0.00 0.00 2.52
256 257 4.356436 AGCCCATTATTTGCCTTTCTCTT 58.644 39.130 0.00 0.00 0.00 2.85
257 258 3.956848 GAGCCCATTATTTGCCTTTCTCT 59.043 43.478 0.00 0.00 0.00 3.10
258 259 3.701040 TGAGCCCATTATTTGCCTTTCTC 59.299 43.478 0.00 0.00 0.00 2.87
259 260 3.448660 GTGAGCCCATTATTTGCCTTTCT 59.551 43.478 0.00 0.00 0.00 2.52
260 261 3.430790 GGTGAGCCCATTATTTGCCTTTC 60.431 47.826 0.00 0.00 0.00 2.62
261 262 2.501316 GGTGAGCCCATTATTTGCCTTT 59.499 45.455 0.00 0.00 0.00 3.11
262 263 2.110578 GGTGAGCCCATTATTTGCCTT 58.889 47.619 0.00 0.00 0.00 4.35
263 264 1.006998 TGGTGAGCCCATTATTTGCCT 59.993 47.619 0.00 0.00 38.72 4.75
264 265 1.484038 TGGTGAGCCCATTATTTGCC 58.516 50.000 0.00 0.00 38.72 4.52
269 270 9.423956 CTAGCATAGTCATGGTGAGCCCATTAT 62.424 44.444 0.00 0.00 41.91 1.28
270 271 8.203563 CTAGCATAGTCATGGTGAGCCCATTA 62.204 46.154 0.00 0.00 41.91 1.90
271 272 7.494212 CTAGCATAGTCATGGTGAGCCCATT 62.494 48.000 0.00 0.00 41.91 3.16
272 273 6.084003 CTAGCATAGTCATGGTGAGCCCAT 62.084 50.000 0.00 0.00 43.94 4.00
273 274 4.822548 CTAGCATAGTCATGGTGAGCCCA 61.823 52.174 0.00 0.00 42.72 5.36
274 275 0.471617 AGCATAGTCATGGTGAGCCC 59.528 55.000 0.00 0.00 41.29 5.19
275 276 3.037431 CTAGCATAGTCATGGTGAGCC 57.963 52.381 0.00 0.00 42.72 4.70
305 306 9.929180 TCGCTACTTTAATGATCTATAAATGCT 57.071 29.630 0.00 0.00 0.00 3.79
312 313 9.209175 GTTTGGATCGCTACTTTAATGATCTAT 57.791 33.333 0.00 0.00 36.54 1.98
313 314 7.381408 CGTTTGGATCGCTACTTTAATGATCTA 59.619 37.037 0.00 0.00 36.54 1.98
314 315 6.201044 CGTTTGGATCGCTACTTTAATGATCT 59.799 38.462 0.00 0.00 36.54 2.75
315 316 6.355638 CGTTTGGATCGCTACTTTAATGATC 58.644 40.000 0.00 0.00 35.77 2.92
316 317 6.287107 CGTTTGGATCGCTACTTTAATGAT 57.713 37.500 0.00 0.00 0.00 2.45
317 318 5.712217 CGTTTGGATCGCTACTTTAATGA 57.288 39.130 0.00 0.00 0.00 2.57
337 338 9.802039 TCCCTCCATAAATAAATATAAAAGCGT 57.198 29.630 0.00 0.00 0.00 5.07
347 348 8.778059 TGACTTGTACTCCCTCCATAAATAAAT 58.222 33.333 0.00 0.00 0.00 1.40
348 349 8.153221 TGACTTGTACTCCCTCCATAAATAAA 57.847 34.615 0.00 0.00 0.00 1.40
349 350 7.743116 TGACTTGTACTCCCTCCATAAATAA 57.257 36.000 0.00 0.00 0.00 1.40
350 351 7.743116 TTGACTTGTACTCCCTCCATAAATA 57.257 36.000 0.00 0.00 0.00 1.40
351 352 6.636454 TTGACTTGTACTCCCTCCATAAAT 57.364 37.500 0.00 0.00 0.00 1.40
352 353 6.442541 TTTGACTTGTACTCCCTCCATAAA 57.557 37.500 0.00 0.00 0.00 1.40
353 354 6.442541 TTTTGACTTGTACTCCCTCCATAA 57.557 37.500 0.00 0.00 0.00 1.90
354 355 6.636454 ATTTTGACTTGTACTCCCTCCATA 57.364 37.500 0.00 0.00 0.00 2.74
355 356 4.993705 TTTTGACTTGTACTCCCTCCAT 57.006 40.909 0.00 0.00 0.00 3.41
356 357 4.993705 ATTTTGACTTGTACTCCCTCCA 57.006 40.909 0.00 0.00 0.00 3.86
357 358 5.297029 GCATATTTTGACTTGTACTCCCTCC 59.703 44.000 0.00 0.00 0.00 4.30
358 359 5.297029 GGCATATTTTGACTTGTACTCCCTC 59.703 44.000 0.00 0.00 0.00 4.30
359 360 5.193679 GGCATATTTTGACTTGTACTCCCT 58.806 41.667 0.00 0.00 0.00 4.20
360 361 4.947388 TGGCATATTTTGACTTGTACTCCC 59.053 41.667 0.00 0.00 32.91 4.30
361 362 5.648092 ACTGGCATATTTTGACTTGTACTCC 59.352 40.000 0.00 0.00 32.91 3.85
362 363 6.546395 CACTGGCATATTTTGACTTGTACTC 58.454 40.000 0.00 0.00 32.91 2.59
368 369 2.819608 ACGCACTGGCATATTTTGACTT 59.180 40.909 0.00 0.00 41.24 3.01
387 391 0.865769 AAGCAGCGTTTACTTGGACG 59.134 50.000 0.00 0.00 41.89 4.79
501 505 3.320879 ATCCACTCACGCTGCAGGG 62.321 63.158 27.57 27.57 0.00 4.45
508 512 3.490759 CGGTGCATCCACTCACGC 61.491 66.667 0.00 0.00 41.75 5.34
577 860 4.415332 CACGTGTCGGGACCGGAG 62.415 72.222 9.46 0.00 40.25 4.63
581 864 4.612412 TTGCCACGTGTCGGGACC 62.612 66.667 15.65 0.00 28.17 4.46
598 881 1.302511 GATGAGCACCGTGGTTGGT 60.303 57.895 4.41 0.00 45.21 3.67
600 883 2.390599 CCGATGAGCACCGTGGTTG 61.391 63.158 4.41 0.00 0.00 3.77
619 902 3.012859 TTGTGCGCCTCGGCATCTA 62.013 57.895 4.18 0.00 45.99 1.98
626 909 1.438710 CTTTTCGTTGTGCGCCTCG 60.439 57.895 4.18 4.52 41.07 4.63
638 921 1.128692 GGAGCATTGACCGACTTTTCG 59.871 52.381 0.00 0.00 45.44 3.46
720 1010 1.666700 CGTCAAAAATATCCGGCGGAA 59.333 47.619 34.58 21.78 34.34 4.30
881 1218 1.154073 GCGTACAGGAGACGGACAC 60.154 63.158 0.00 0.00 40.66 3.67
908 1257 0.246910 TTCTGCTCTGCTCTGCTCTG 59.753 55.000 0.00 0.00 0.00 3.35
909 1258 1.137479 GATTCTGCTCTGCTCTGCTCT 59.863 52.381 0.00 0.00 0.00 4.09
910 1259 1.574134 GATTCTGCTCTGCTCTGCTC 58.426 55.000 0.00 0.00 0.00 4.26
911 1260 0.178533 GGATTCTGCTCTGCTCTGCT 59.821 55.000 0.00 0.00 0.00 4.24
912 1261 1.152989 CGGATTCTGCTCTGCTCTGC 61.153 60.000 0.00 0.00 0.00 4.26
913 1262 0.530211 CCGGATTCTGCTCTGCTCTG 60.530 60.000 0.00 0.00 0.00 3.35
914 1263 0.975040 ACCGGATTCTGCTCTGCTCT 60.975 55.000 9.46 0.00 0.00 4.09
952 1301 2.329399 GGAGGGAGGGAGAGAGGGT 61.329 68.421 0.00 0.00 0.00 4.34
984 1333 4.286320 ATGGCGACGGGCTCGATC 62.286 66.667 15.95 5.64 46.14 3.69
985 1334 4.592192 CATGGCGACGGGCTCGAT 62.592 66.667 15.95 0.00 46.14 3.59
1332 1683 4.744631 CCTGGCACAATTAATAAAATCGCC 59.255 41.667 0.00 0.00 38.70 5.54
1342 1693 1.102154 CGCATCCCTGGCACAATTAA 58.898 50.000 0.00 0.00 38.70 1.40
1573 1924 2.606519 TTACCCGAGCAGCCAGGT 60.607 61.111 4.16 4.16 36.36 4.00
1576 1927 3.712907 GGGTTACCCGAGCAGCCA 61.713 66.667 3.99 0.00 32.13 4.75
1618 1969 2.660064 AAGGGAGAATCTGCGCCGT 61.660 57.895 4.18 0.00 33.73 5.68
1826 2178 2.368548 GCAATTTTGACCCCAGGTTTCT 59.631 45.455 0.00 0.00 35.25 2.52
1873 2225 7.932491 CAGCACTGAAGTACTCCTATACTACTA 59.068 40.741 0.00 0.00 34.18 1.82
1874 2226 6.768861 CAGCACTGAAGTACTCCTATACTACT 59.231 42.308 0.00 0.00 34.18 2.57
1875 2227 6.543100 ACAGCACTGAAGTACTCCTATACTAC 59.457 42.308 4.31 0.00 34.18 2.73
1898 2250 0.737367 GCAGAGCACTGATACGCACA 60.737 55.000 15.88 0.00 46.03 4.57
1938 2290 1.409251 TTGCCAGCCAAGCACCAAAT 61.409 50.000 0.00 0.00 40.69 2.32
1983 2335 1.833049 CAGGTAGGAGTAGGCGGGG 60.833 68.421 0.00 0.00 0.00 5.73
1984 2336 1.076192 ACAGGTAGGAGTAGGCGGG 60.076 63.158 0.00 0.00 0.00 6.13
1985 2337 1.392710 CCACAGGTAGGAGTAGGCGG 61.393 65.000 0.00 0.00 0.00 6.13
1986 2338 0.683504 ACCACAGGTAGGAGTAGGCG 60.684 60.000 0.00 0.00 32.11 5.52
1987 2339 1.112950 GACCACAGGTAGGAGTAGGC 58.887 60.000 0.00 0.00 35.25 3.93
1988 2340 2.379972 CTGACCACAGGTAGGAGTAGG 58.620 57.143 0.00 0.00 40.14 3.18
1989 2341 1.751924 GCTGACCACAGGTAGGAGTAG 59.248 57.143 0.00 0.00 43.62 2.57
1990 2342 1.848652 GCTGACCACAGGTAGGAGTA 58.151 55.000 0.00 0.00 43.62 2.59
1991 2343 1.251527 CGCTGACCACAGGTAGGAGT 61.252 60.000 0.00 0.00 43.62 3.85
1992 2344 1.251527 ACGCTGACCACAGGTAGGAG 61.252 60.000 0.00 0.00 43.62 3.69
1993 2345 1.228769 ACGCTGACCACAGGTAGGA 60.229 57.895 0.00 0.00 43.62 2.94
2067 2419 1.696832 GCTCCGAACGAAGTGGATGC 61.697 60.000 0.00 0.00 45.00 3.91
2083 2435 1.402984 CCGTCAACAGTGTAGGAGCTC 60.403 57.143 4.71 4.71 0.00 4.09
2174 2526 7.171447 TGAACGTTTCTGGCAAAAATTAATG 57.829 32.000 0.46 0.00 0.00 1.90
2179 2574 4.057432 CCATGAACGTTTCTGGCAAAAAT 58.943 39.130 14.72 0.00 0.00 1.82
2230 2679 6.928979 TTACGACTCACCATTTCAGAAAAA 57.071 33.333 0.00 0.00 0.00 1.94
2256 2705 3.398406 GCATCCGGTTTTGTTTGGAAAT 58.602 40.909 0.00 0.00 33.48 2.17
2265 2714 1.583451 CATCGCGCATCCGGTTTTG 60.583 57.895 8.75 0.00 34.32 2.44
2423 2887 9.934190 ACAGTTTATTTTGTGATTTGATTTTGC 57.066 25.926 0.00 0.00 0.00 3.68
2471 2937 2.480416 GGGCGTCACACAAAAATGTCAA 60.480 45.455 0.00 0.00 0.00 3.18
2666 3157 3.057806 GGCGTTGTACTAATGGTTGCTTT 60.058 43.478 0.00 0.00 0.00 3.51
2691 3182 6.670093 ACTATACAGTGTAGCGCCTAGCTTT 61.670 44.000 2.29 0.00 43.79 3.51
2775 3266 1.136891 CTACATGCCTGGTCATCGTCA 59.863 52.381 0.00 0.00 0.00 4.35
2780 3271 1.524621 GCGCTACATGCCTGGTCAT 60.525 57.895 0.00 0.00 38.78 3.06
2790 3282 1.615883 CCTCACAGATAGGCGCTACAT 59.384 52.381 7.64 0.00 0.00 2.29
2816 3308 1.830279 AGGCGCTACACTACACTGTA 58.170 50.000 7.64 0.00 0.00 2.74
2862 3354 2.962125 TGAAACTATTTCACGCGGCTA 58.038 42.857 12.47 0.00 44.21 3.93
2906 3398 1.495951 GGCAACCTACGCACGAAAG 59.504 57.895 0.00 0.00 0.00 2.62
2925 3417 3.934391 AACGCTGTCTAGGCACGGC 62.934 63.158 18.75 12.87 44.14 5.68
2926 3418 2.094659 CAACGCTGTCTAGGCACGG 61.095 63.158 18.75 6.36 0.00 4.94
2927 3419 2.730672 GCAACGCTGTCTAGGCACG 61.731 63.158 14.82 14.82 0.00 5.34
2928 3420 1.667830 TGCAACGCTGTCTAGGCAC 60.668 57.895 0.00 0.00 0.00 5.01
2929 3421 1.667830 GTGCAACGCTGTCTAGGCA 60.668 57.895 0.00 0.00 0.00 4.75
2930 3422 3.169198 GTGCAACGCTGTCTAGGC 58.831 61.111 0.00 0.00 0.00 3.93
3169 3661 2.504996 CAGAGGAGGCAAAGGATCTCTT 59.495 50.000 0.00 0.00 37.28 2.85
3170 3662 2.117865 CAGAGGAGGCAAAGGATCTCT 58.882 52.381 0.00 0.00 32.51 3.10
3192 3684 1.121240 CGACAGAACGTGTGTGAGAC 58.879 55.000 8.47 0.00 40.56 3.36
3302 3799 4.201679 CCACGCATGGCTGGCATG 62.202 66.667 32.55 32.55 39.82 4.06
3318 3815 2.094494 TCTCAGTGAGAAGATGAACGCC 60.094 50.000 20.65 0.00 35.59 5.68
3319 3816 3.223423 TCTCAGTGAGAAGATGAACGC 57.777 47.619 20.65 0.00 35.59 4.84
3320 3817 5.405797 TGAATCTCAGTGAGAAGATGAACG 58.594 41.667 26.06 0.00 42.27 3.95
3321 3818 6.479660 GGATGAATCTCAGTGAGAAGATGAAC 59.520 42.308 26.06 13.67 42.27 3.18
3322 3819 6.580788 GGATGAATCTCAGTGAGAAGATGAA 58.419 40.000 26.06 9.78 42.27 2.57
3323 3820 5.221204 CGGATGAATCTCAGTGAGAAGATGA 60.221 44.000 26.06 10.68 42.27 2.92
3324 3821 4.983538 CGGATGAATCTCAGTGAGAAGATG 59.016 45.833 26.06 9.29 42.27 2.90
3325 3822 4.039004 CCGGATGAATCTCAGTGAGAAGAT 59.961 45.833 26.06 17.07 42.27 2.40
3403 3905 7.693852 CGTAACAACGACAAAATGGAAACAGG 61.694 42.308 0.00 0.00 38.68 4.00
3437 3940 1.688735 TCCCTCCATCAACTCTATGCG 59.311 52.381 0.00 0.00 0.00 4.73
3497 4006 2.394930 TGGTGCAGCGCTCTTTTATA 57.605 45.000 7.13 0.00 0.00 0.98
3632 4217 8.065407 TCTATTGTTGTTGTTGACGTTGTATTC 58.935 33.333 0.00 0.00 0.00 1.75
3703 4308 1.080434 GTCCACCAGTCTGCGAGAC 60.080 63.158 7.88 7.88 45.38 3.36
3747 4352 2.179517 GCCGTCAGACTGTCCTCG 59.820 66.667 3.76 6.99 0.00 4.63
4044 4649 2.350895 TCGAAGACGACCGGGGTA 59.649 61.111 6.32 0.00 43.81 3.69
4098 4703 1.550976 GTCTGGTCGGAGTTGAGGAAT 59.449 52.381 0.00 0.00 0.00 3.01
4104 4709 1.444553 GAGCGTCTGGTCGGAGTTG 60.445 63.158 0.00 0.00 32.15 3.16
4498 5103 4.264253 CAATCAAAGTACCAGAGGCATCA 58.736 43.478 0.00 0.00 0.00 3.07
4593 5198 8.833231 TTTGTTCTTGTAACCATCTCTCTAAG 57.167 34.615 0.00 0.00 0.00 2.18
4596 5201 9.965902 ATTATTTGTTCTTGTAACCATCTCTCT 57.034 29.630 0.00 0.00 0.00 3.10
4700 5322 5.638596 TCTGCACACTTAAGTAGAATCGA 57.361 39.130 8.04 0.00 0.00 3.59
4701 5323 6.140895 CGTATCTGCACACTTAAGTAGAATCG 59.859 42.308 8.04 11.77 30.43 3.34
4702 5324 7.194278 TCGTATCTGCACACTTAAGTAGAATC 58.806 38.462 8.04 4.77 30.43 2.52
4726 5348 5.784177 ACTCCCACATACACGATTATGATC 58.216 41.667 12.88 0.00 34.14 2.92
4727 5349 5.808366 ACTCCCACATACACGATTATGAT 57.192 39.130 12.88 0.00 34.14 2.45
4731 5353 4.216902 CGGATACTCCCACATACACGATTA 59.783 45.833 0.00 0.00 31.13 1.75
4734 5356 1.951602 CGGATACTCCCACATACACGA 59.048 52.381 0.00 0.00 31.13 4.35
4736 5358 1.602165 CGCGGATACTCCCACATACAC 60.602 57.143 0.00 0.00 31.13 2.90
4746 5368 0.666577 GGCCATACACGCGGATACTC 60.667 60.000 12.47 0.00 0.00 2.59
4747 5369 1.366366 GGCCATACACGCGGATACT 59.634 57.895 12.47 0.00 0.00 2.12
4829 5452 4.384247 CGATGTTTGGCTTTTTCGCAAATA 59.616 37.500 0.00 0.00 0.00 1.40
4830 5453 3.184178 CGATGTTTGGCTTTTTCGCAAAT 59.816 39.130 0.00 0.00 0.00 2.32
4833 5456 1.066303 ACGATGTTTGGCTTTTTCGCA 59.934 42.857 0.00 0.00 0.00 5.10
4834 5457 1.451651 CACGATGTTTGGCTTTTTCGC 59.548 47.619 0.00 0.00 0.00 4.70
4835 5458 2.719046 GTCACGATGTTTGGCTTTTTCG 59.281 45.455 0.00 0.00 0.00 3.46
4836 5459 3.701241 TGTCACGATGTTTGGCTTTTTC 58.299 40.909 0.00 0.00 0.00 2.29
4872 5497 3.333804 CGCAAATAAAAATGCAAGGGGT 58.666 40.909 0.00 0.00 42.68 4.95
4888 5513 0.537188 TGGTTGGCTTTTTCCGCAAA 59.463 45.000 0.00 0.00 0.00 3.68
4892 5517 4.007659 AGTATAGTGGTTGGCTTTTTCCG 58.992 43.478 0.00 0.00 0.00 4.30
4893 5518 6.178324 AGTAGTATAGTGGTTGGCTTTTTCC 58.822 40.000 0.00 0.00 0.00 3.13
4918 5544 9.180678 CTTTTTGTGTTAATTTTCGCATCTACT 57.819 29.630 0.00 0.00 0.00 2.57
4919 5545 8.424731 CCTTTTTGTGTTAATTTTCGCATCTAC 58.575 33.333 0.00 0.00 0.00 2.59
4956 5582 1.229082 TGGAGTGGCTAGACCGGTT 60.229 57.895 9.42 0.87 43.94 4.44
4975 5601 2.069273 AGGCATTCGAACGTGAAAGAG 58.931 47.619 0.00 0.00 0.00 2.85
4978 5604 5.007234 CCATATTAGGCATTCGAACGTGAAA 59.993 40.000 0.00 0.00 0.00 2.69
4983 5609 6.367695 TGTTATCCATATTAGGCATTCGAACG 59.632 38.462 0.00 0.00 0.00 3.95
5015 5641 8.453320 CACTGCTCATAGATTCAAAAATACACA 58.547 33.333 0.00 0.00 0.00 3.72
5016 5642 7.912250 CCACTGCTCATAGATTCAAAAATACAC 59.088 37.037 0.00 0.00 0.00 2.90
5084 5710 2.614481 GGTTTGAGACTTGGCGACCATA 60.614 50.000 0.00 0.00 31.53 2.74
5093 5719 0.859232 CGTCGTGGGTTTGAGACTTG 59.141 55.000 0.00 0.00 0.00 3.16
5132 5758 3.283259 AAAGATTGTAGTGGCTAGGGC 57.717 47.619 0.00 0.00 37.82 5.19
5134 5760 5.258456 TCGTAAAGATTGTAGTGGCTAGG 57.742 43.478 0.00 0.00 0.00 3.02
5164 5794 5.246203 GGCCATGTAGATTGTAGGATGTCTA 59.754 44.000 0.00 0.00 0.00 2.59
5179 5809 5.344066 GTCGTCATCATATAGGCCATGTAG 58.656 45.833 5.01 0.00 0.00 2.74
5180 5810 4.142469 CGTCGTCATCATATAGGCCATGTA 60.142 45.833 5.01 0.00 0.00 2.29
5181 5811 3.367395 CGTCGTCATCATATAGGCCATGT 60.367 47.826 5.01 0.00 0.00 3.21
5182 5812 3.182182 CGTCGTCATCATATAGGCCATG 58.818 50.000 5.01 0.00 0.00 3.66
5183 5813 2.417379 GCGTCGTCATCATATAGGCCAT 60.417 50.000 5.01 0.00 0.00 4.40
5184 5814 1.067846 GCGTCGTCATCATATAGGCCA 60.068 52.381 5.01 0.00 0.00 5.36
5185 5815 1.630148 GCGTCGTCATCATATAGGCC 58.370 55.000 0.00 0.00 0.00 5.19
5186 5816 1.630148 GGCGTCGTCATCATATAGGC 58.370 55.000 0.00 0.00 0.00 3.93
5187 5817 1.896345 CGGCGTCGTCATCATATAGG 58.104 55.000 0.00 0.00 0.00 2.57
5199 5829 1.904144 TTAAGAAGATGACGGCGTCG 58.096 50.000 31.90 8.42 43.02 5.12
5200 5830 3.181523 GGTTTTAAGAAGATGACGGCGTC 60.182 47.826 31.68 31.68 0.00 5.19
5201 5831 2.740447 GGTTTTAAGAAGATGACGGCGT 59.260 45.455 14.65 14.65 0.00 5.68
5202 5832 3.000727 AGGTTTTAAGAAGATGACGGCG 58.999 45.455 4.80 4.80 0.00 6.46
5203 5833 4.034163 GCTAGGTTTTAAGAAGATGACGGC 59.966 45.833 0.00 0.00 0.00 5.68
5204 5834 4.571176 GGCTAGGTTTTAAGAAGATGACGG 59.429 45.833 0.00 0.00 0.00 4.79
5205 5835 4.267928 CGGCTAGGTTTTAAGAAGATGACG 59.732 45.833 0.00 0.00 0.00 4.35
5206 5836 4.034163 GCGGCTAGGTTTTAAGAAGATGAC 59.966 45.833 0.00 0.00 0.00 3.06
5207 5837 4.189231 GCGGCTAGGTTTTAAGAAGATGA 58.811 43.478 0.00 0.00 0.00 2.92
5208 5838 3.001330 CGCGGCTAGGTTTTAAGAAGATG 59.999 47.826 0.00 0.00 0.00 2.90
5209 5839 3.118884 TCGCGGCTAGGTTTTAAGAAGAT 60.119 43.478 6.13 0.00 0.00 2.40
5210 5840 2.231964 TCGCGGCTAGGTTTTAAGAAGA 59.768 45.455 6.13 0.00 0.00 2.87
5211 5841 2.347755 GTCGCGGCTAGGTTTTAAGAAG 59.652 50.000 1.90 0.00 0.00 2.85
5212 5842 2.340337 GTCGCGGCTAGGTTTTAAGAA 58.660 47.619 1.90 0.00 0.00 2.52
5213 5843 1.733389 CGTCGCGGCTAGGTTTTAAGA 60.733 52.381 9.90 0.00 0.00 2.10
5214 5844 0.643820 CGTCGCGGCTAGGTTTTAAG 59.356 55.000 9.90 0.00 0.00 1.85
5215 5845 0.243365 TCGTCGCGGCTAGGTTTTAA 59.757 50.000 9.90 0.00 0.00 1.52
5216 5846 0.179156 CTCGTCGCGGCTAGGTTTTA 60.179 55.000 9.90 0.00 0.00 1.52
5217 5847 1.445582 CTCGTCGCGGCTAGGTTTT 60.446 57.895 9.90 0.00 0.00 2.43
5218 5848 2.181021 CTCGTCGCGGCTAGGTTT 59.819 61.111 9.90 0.00 0.00 3.27
5219 5849 3.823330 CCTCGTCGCGGCTAGGTT 61.823 66.667 22.16 0.00 0.00 3.50
5221 5851 3.823330 AACCTCGTCGCGGCTAGG 61.823 66.667 27.72 27.72 35.14 3.02
5222 5852 2.579787 CAACCTCGTCGCGGCTAG 60.580 66.667 9.90 7.33 0.00 3.42
5223 5853 3.057548 TCAACCTCGTCGCGGCTA 61.058 61.111 9.90 0.00 0.00 3.93
5224 5854 4.719369 GTCAACCTCGTCGCGGCT 62.719 66.667 9.90 0.00 0.00 5.52
5225 5855 4.719369 AGTCAACCTCGTCGCGGC 62.719 66.667 6.13 1.93 0.00 6.53
5226 5856 2.504244 GAGTCAACCTCGTCGCGG 60.504 66.667 6.13 0.00 0.00 6.46
5227 5857 2.504244 GGAGTCAACCTCGTCGCG 60.504 66.667 0.00 0.00 41.46 5.87
5228 5858 2.126031 GGGAGTCAACCTCGTCGC 60.126 66.667 0.00 0.00 41.46 5.19
5229 5859 1.213013 CAGGGAGTCAACCTCGTCG 59.787 63.158 0.00 0.00 41.46 5.12
5230 5860 1.079750 GCAGGGAGTCAACCTCGTC 60.080 63.158 0.00 0.00 41.46 4.20
5231 5861 1.534235 AGCAGGGAGTCAACCTCGT 60.534 57.895 0.00 0.00 41.46 4.18
5232 5862 1.079543 CAGCAGGGAGTCAACCTCG 60.080 63.158 0.00 0.00 41.46 4.63
5233 5863 1.376553 GCAGCAGGGAGTCAACCTC 60.377 63.158 0.00 0.00 35.78 3.85
5234 5864 2.149383 TGCAGCAGGGAGTCAACCT 61.149 57.895 0.00 0.00 39.43 3.50
5235 5865 1.968540 GTGCAGCAGGGAGTCAACC 60.969 63.158 0.00 0.00 0.00 3.77
5236 5866 0.607489 ATGTGCAGCAGGGAGTCAAC 60.607 55.000 0.00 0.00 0.00 3.18
5237 5867 0.111061 AATGTGCAGCAGGGAGTCAA 59.889 50.000 0.00 0.00 0.00 3.18
5238 5868 0.321919 GAATGTGCAGCAGGGAGTCA 60.322 55.000 0.00 0.00 0.00 3.41
5239 5869 0.035630 AGAATGTGCAGCAGGGAGTC 60.036 55.000 0.00 0.00 0.00 3.36
5240 5870 1.209019 CTAGAATGTGCAGCAGGGAGT 59.791 52.381 0.00 0.00 0.00 3.85
5241 5871 1.474677 CCTAGAATGTGCAGCAGGGAG 60.475 57.143 0.00 0.00 0.00 4.30
5242 5872 0.543277 CCTAGAATGTGCAGCAGGGA 59.457 55.000 0.00 0.00 0.00 4.20
5243 5873 0.254178 ACCTAGAATGTGCAGCAGGG 59.746 55.000 0.00 0.00 0.00 4.45
5244 5874 1.065926 TCACCTAGAATGTGCAGCAGG 60.066 52.381 0.00 0.00 33.71 4.85
5245 5875 2.005451 GTCACCTAGAATGTGCAGCAG 58.995 52.381 0.00 0.00 33.71 4.24
5246 5876 1.625315 AGTCACCTAGAATGTGCAGCA 59.375 47.619 0.00 0.00 33.71 4.41
5247 5877 2.393271 AGTCACCTAGAATGTGCAGC 57.607 50.000 0.00 0.00 33.71 5.25
5248 5878 2.926200 CGAAGTCACCTAGAATGTGCAG 59.074 50.000 0.00 0.00 33.71 4.41
5249 5879 2.353704 CCGAAGTCACCTAGAATGTGCA 60.354 50.000 0.00 0.00 33.71 4.57
5250 5880 2.094182 TCCGAAGTCACCTAGAATGTGC 60.094 50.000 0.00 0.00 33.71 4.57
5251 5881 3.868757 TCCGAAGTCACCTAGAATGTG 57.131 47.619 0.00 0.00 35.01 3.21
5252 5882 4.087182 TCTTCCGAAGTCACCTAGAATGT 58.913 43.478 8.01 0.00 0.00 2.71
5253 5883 4.677584 CTCTTCCGAAGTCACCTAGAATG 58.322 47.826 8.01 0.00 0.00 2.67
5254 5884 3.131400 GCTCTTCCGAAGTCACCTAGAAT 59.869 47.826 8.01 0.00 0.00 2.40
5255 5885 2.492484 GCTCTTCCGAAGTCACCTAGAA 59.508 50.000 8.01 0.00 0.00 2.10
5256 5886 2.093106 GCTCTTCCGAAGTCACCTAGA 58.907 52.381 8.01 0.00 0.00 2.43
5257 5887 1.819288 TGCTCTTCCGAAGTCACCTAG 59.181 52.381 8.01 0.00 0.00 3.02
5258 5888 1.919240 TGCTCTTCCGAAGTCACCTA 58.081 50.000 8.01 0.00 0.00 3.08
5259 5889 1.048601 TTGCTCTTCCGAAGTCACCT 58.951 50.000 8.01 0.00 0.00 4.00
5260 5890 1.149148 GTTGCTCTTCCGAAGTCACC 58.851 55.000 8.01 0.00 0.00 4.02
5261 5891 1.149148 GGTTGCTCTTCCGAAGTCAC 58.851 55.000 8.01 0.40 0.00 3.67
5262 5892 3.606886 GGTTGCTCTTCCGAAGTCA 57.393 52.632 8.01 5.16 0.00 3.41
5268 5898 4.394712 AGCCCGGTTGCTCTTCCG 62.395 66.667 0.00 0.00 45.42 4.30
5284 5914 0.107703 TTAGCTGGGTTGATGCGGAG 60.108 55.000 0.00 0.00 0.00 4.63
5285 5915 0.326595 TTTAGCTGGGTTGATGCGGA 59.673 50.000 0.00 0.00 0.00 5.54
5286 5916 1.334869 GATTTAGCTGGGTTGATGCGG 59.665 52.381 0.00 0.00 0.00 5.69
5287 5917 1.003545 CGATTTAGCTGGGTTGATGCG 60.004 52.381 0.00 0.00 0.00 4.73
5288 5918 2.032178 GTCGATTTAGCTGGGTTGATGC 59.968 50.000 0.00 0.00 0.00 3.91
5289 5919 2.285220 CGTCGATTTAGCTGGGTTGATG 59.715 50.000 0.00 0.00 0.00 3.07
5290 5920 2.550978 CGTCGATTTAGCTGGGTTGAT 58.449 47.619 0.00 0.00 0.00 2.57
5291 5921 1.404986 CCGTCGATTTAGCTGGGTTGA 60.405 52.381 0.00 0.00 0.00 3.18
5292 5922 1.006832 CCGTCGATTTAGCTGGGTTG 58.993 55.000 0.00 0.00 0.00 3.77
5293 5923 0.611714 ACCGTCGATTTAGCTGGGTT 59.388 50.000 0.00 0.00 0.00 4.11
5294 5924 0.175073 GACCGTCGATTTAGCTGGGT 59.825 55.000 0.00 0.00 0.00 4.51
5295 5925 0.460311 AGACCGTCGATTTAGCTGGG 59.540 55.000 0.00 0.00 0.00 4.45
5296 5926 1.536284 GGAGACCGTCGATTTAGCTGG 60.536 57.143 0.00 0.00 0.00 4.85
5297 5927 1.536284 GGGAGACCGTCGATTTAGCTG 60.536 57.143 0.00 0.00 43.64 4.24
5298 5928 0.745468 GGGAGACCGTCGATTTAGCT 59.255 55.000 0.00 0.00 43.64 3.32
5299 5929 3.269520 GGGAGACCGTCGATTTAGC 57.730 57.895 0.00 0.00 43.64 3.09
5311 5941 1.519455 CGCAACGGATGAGGGAGAC 60.519 63.158 0.00 0.00 0.00 3.36
5312 5942 2.892640 CGCAACGGATGAGGGAGA 59.107 61.111 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.