Multiple sequence alignment - TraesCS5A01G248800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G248800 chr5A 100.000 6817 0 0 790 7606 463055780 463062596 0.000000e+00 12589.0
1 TraesCS5A01G248800 chr5A 100.000 490 0 0 1 490 463054991 463055480 0.000000e+00 905.0
2 TraesCS5A01G248800 chr5D 96.269 4664 137 12 2959 7606 362393804 362398446 0.000000e+00 7614.0
3 TraesCS5A01G248800 chr5D 96.643 2085 35 13 802 2876 362391746 362393805 0.000000e+00 3430.0
4 TraesCS5A01G248800 chr5D 92.308 299 14 8 195 490 362391403 362391695 4.250000e-112 416.0
5 TraesCS5A01G248800 chr5B 97.047 3894 85 14 2959 6836 428122276 428126155 0.000000e+00 6527.0
6 TraesCS5A01G248800 chr5B 93.454 2108 94 22 794 2876 428120189 428122277 0.000000e+00 3088.0
7 TraesCS5A01G248800 chr5B 86.022 465 37 11 6840 7291 428126340 428126789 2.480000e-129 473.0
8 TraesCS5A01G248800 chr5B 94.231 312 15 2 7297 7606 428127010 428127320 2.480000e-129 473.0
9 TraesCS5A01G248800 chr5B 91.089 303 12 11 192 490 428119844 428120135 5.530000e-106 396.0
10 TraesCS5A01G248800 chr5B 92.929 99 5 2 2869 2966 322205059 322205156 7.960000e-30 143.0
11 TraesCS5A01G248800 chr2B 79.840 1002 149 35 4844 5824 687822352 687823321 0.000000e+00 682.0
12 TraesCS5A01G248800 chr4A 77.854 1025 149 50 4847 5835 601724587 601723605 1.430000e-156 564.0
13 TraesCS5A01G248800 chr7D 97.727 88 2 0 2874 2961 299591208 299591295 1.320000e-32 152.0
14 TraesCS5A01G248800 chr7D 93.814 97 6 0 2875 2971 153666289 153666385 6.150000e-31 147.0
15 TraesCS5A01G248800 chr1D 95.745 94 3 1 2872 2964 195609661 195609568 4.750000e-32 150.0
16 TraesCS5A01G248800 chr6D 93.000 100 7 0 2864 2963 270313139 270313040 6.150000e-31 147.0
17 TraesCS5A01G248800 chr6D 94.000 50 3 0 7331 7380 334250164 334250213 8.180000e-10 76.8
18 TraesCS5A01G248800 chr6A 93.878 98 4 2 2873 2969 20747094 20746998 6.150000e-31 147.0
19 TraesCS5A01G248800 chr3D 94.737 95 4 1 2874 2968 535746856 535746949 6.150000e-31 147.0
20 TraesCS5A01G248800 chr3A 92.929 99 7 0 2872 2970 659039416 659039514 2.210000e-30 145.0
21 TraesCS5A01G248800 chr4B 92.233 103 4 4 2870 2970 314423844 314423944 7.960000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G248800 chr5A 463054991 463062596 7605 False 6747.0 12589 100.000000 1 7606 2 chr5A.!!$F1 7605
1 TraesCS5A01G248800 chr5D 362391403 362398446 7043 False 3820.0 7614 95.073333 195 7606 3 chr5D.!!$F1 7411
2 TraesCS5A01G248800 chr5B 428119844 428127320 7476 False 2191.4 6527 92.368600 192 7606 5 chr5B.!!$F2 7414
3 TraesCS5A01G248800 chr2B 687822352 687823321 969 False 682.0 682 79.840000 4844 5824 1 chr2B.!!$F1 980
4 TraesCS5A01G248800 chr4A 601723605 601724587 982 True 564.0 564 77.854000 4847 5835 1 chr4A.!!$R1 988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.105039 GGACCGCTGTAATGGAGGAG 59.895 60.000 0.00 0.00 0.00 3.69 F
354 355 1.067821 GACCGCTGTAATGGAGGAGAG 59.932 57.143 0.00 0.00 0.00 3.20 F
1734 1767 0.982852 TGGAGGGTGGCTGATCGAAT 60.983 55.000 0.00 0.00 0.00 3.34 F
2424 2463 0.610687 AGGCTTGACTACAGACCAGC 59.389 55.000 0.00 0.00 0.00 4.85 F
2947 2987 0.686224 ACCACGACGGGTAATTTGGA 59.314 50.000 6.26 0.00 40.07 3.53 F
2951 2991 0.722848 CGACGGGTAATTTGGAACGG 59.277 55.000 0.00 0.00 0.00 4.44 F
2956 2996 1.282738 GGGTAATTTGGAACGGAGGGA 59.717 52.381 0.00 0.00 0.00 4.20 F
2957 2997 2.640184 GGTAATTTGGAACGGAGGGAG 58.360 52.381 0.00 0.00 0.00 4.30 F
4093 4142 3.820590 CACTTGTGTGCCCGTTCA 58.179 55.556 0.00 0.00 37.38 3.18 F
5452 5553 2.072298 GAACTCACATGAGAGGTGTGC 58.928 52.381 21.95 2.75 45.01 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 1439 2.365582 ACTCTGAAAAACACGTGCCTT 58.634 42.857 17.22 6.56 0.00 4.35 R
2316 2355 4.082625 TGCAAGAATCACACACATCATTCC 60.083 41.667 0.00 0.00 0.00 3.01 R
2928 2968 0.686224 TCCAAATTACCCGTCGTGGT 59.314 50.000 9.82 9.82 42.62 4.16 R
4324 4373 1.276989 TGAGTGACATGATGCTGAGCA 59.723 47.619 10.59 10.59 44.86 4.26 R
4436 4485 5.643348 TGTGAGCTACATGTAACATTGGAAG 59.357 40.000 7.06 0.00 33.42 3.46 R
4983 5033 5.287992 GCTTAACATGAGCAATTTGAGAAGC 59.712 40.000 0.00 0.00 39.89 3.86 R
5031 5081 4.405358 TGAAAGCTGAAACAAGGGTGAATT 59.595 37.500 0.00 0.00 0.00 2.17 R
5452 5553 0.391661 CTCCCATTCACTCACACGGG 60.392 60.000 0.00 0.00 34.81 5.28 R
6331 6457 1.418637 GGGTGGCGATGGTATAAGGAA 59.581 52.381 0.00 0.00 0.00 3.36 R
7105 7436 0.248296 GAAACCGACAGCGTTGCAAA 60.248 50.000 0.00 0.00 35.23 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.545678 TCCACATTTAGGATGGAATTGGG 58.454 43.478 0.00 0.00 39.60 4.12
23 24 3.642848 CCACATTTAGGATGGAATTGGGG 59.357 47.826 0.00 0.00 35.33 4.96
24 25 3.642848 CACATTTAGGATGGAATTGGGGG 59.357 47.826 0.00 0.00 0.00 5.40
25 26 3.535590 ACATTTAGGATGGAATTGGGGGA 59.464 43.478 0.00 0.00 0.00 4.81
26 27 3.971468 TTTAGGATGGAATTGGGGGAG 57.029 47.619 0.00 0.00 0.00 4.30
27 28 1.149101 TAGGATGGAATTGGGGGAGC 58.851 55.000 0.00 0.00 0.00 4.70
28 29 1.152461 GGATGGAATTGGGGGAGCC 60.152 63.158 0.00 0.00 0.00 4.70
29 30 1.152461 GATGGAATTGGGGGAGCCC 60.152 63.158 0.00 0.00 44.51 5.19
41 42 3.191888 GGGGAGCCCAGAATATCTAGA 57.808 52.381 8.02 0.00 44.65 2.43
42 43 2.835156 GGGGAGCCCAGAATATCTAGAC 59.165 54.545 8.02 0.00 44.65 2.59
43 44 2.835156 GGGAGCCCAGAATATCTAGACC 59.165 54.545 0.00 0.00 35.81 3.85
44 45 2.494073 GGAGCCCAGAATATCTAGACCG 59.506 54.545 0.00 0.00 0.00 4.79
45 46 3.158676 GAGCCCAGAATATCTAGACCGT 58.841 50.000 0.00 0.00 0.00 4.83
46 47 3.574826 GAGCCCAGAATATCTAGACCGTT 59.425 47.826 0.00 0.00 0.00 4.44
47 48 3.322254 AGCCCAGAATATCTAGACCGTTG 59.678 47.826 0.00 0.00 0.00 4.10
48 49 3.321111 GCCCAGAATATCTAGACCGTTGA 59.679 47.826 0.00 0.00 0.00 3.18
49 50 4.202223 GCCCAGAATATCTAGACCGTTGAA 60.202 45.833 0.00 0.00 0.00 2.69
50 51 5.511545 GCCCAGAATATCTAGACCGTTGAAT 60.512 44.000 0.00 0.00 0.00 2.57
51 52 6.525629 CCCAGAATATCTAGACCGTTGAATT 58.474 40.000 0.00 0.00 0.00 2.17
52 53 6.992715 CCCAGAATATCTAGACCGTTGAATTT 59.007 38.462 0.00 0.00 0.00 1.82
53 54 7.499232 CCCAGAATATCTAGACCGTTGAATTTT 59.501 37.037 0.00 0.00 0.00 1.82
54 55 8.338259 CCAGAATATCTAGACCGTTGAATTTTG 58.662 37.037 0.00 0.00 0.00 2.44
55 56 8.338259 CAGAATATCTAGACCGTTGAATTTTGG 58.662 37.037 0.00 0.00 0.00 3.28
56 57 8.265055 AGAATATCTAGACCGTTGAATTTTGGA 58.735 33.333 0.00 0.00 0.00 3.53
57 58 8.801882 AATATCTAGACCGTTGAATTTTGGAA 57.198 30.769 0.00 0.00 0.00 3.53
58 59 6.743575 ATCTAGACCGTTGAATTTTGGAAG 57.256 37.500 0.00 0.00 0.00 3.46
59 60 3.643159 AGACCGTTGAATTTTGGAAGC 57.357 42.857 0.00 0.00 0.00 3.86
60 61 2.296190 AGACCGTTGAATTTTGGAAGCC 59.704 45.455 0.00 0.00 0.00 4.35
61 62 2.296190 GACCGTTGAATTTTGGAAGCCT 59.704 45.455 0.00 0.00 0.00 4.58
62 63 2.035832 ACCGTTGAATTTTGGAAGCCTG 59.964 45.455 0.00 0.00 0.00 4.85
63 64 2.061028 CGTTGAATTTTGGAAGCCTGC 58.939 47.619 0.00 0.00 0.00 4.85
64 65 2.288395 CGTTGAATTTTGGAAGCCTGCT 60.288 45.455 0.00 0.00 0.00 4.24
65 66 3.062042 GTTGAATTTTGGAAGCCTGCTG 58.938 45.455 0.00 0.00 0.00 4.41
66 67 1.619827 TGAATTTTGGAAGCCTGCTGG 59.380 47.619 5.03 5.03 0.00 4.85
67 68 0.978907 AATTTTGGAAGCCTGCTGGG 59.021 50.000 12.06 1.66 38.36 4.45
76 77 2.348998 CCTGCTGGGCGTCTCTTT 59.651 61.111 0.71 0.00 0.00 2.52
77 78 2.037136 CCTGCTGGGCGTCTCTTTG 61.037 63.158 0.71 0.00 0.00 2.77
78 79 1.004560 CTGCTGGGCGTCTCTTTGA 60.005 57.895 0.00 0.00 0.00 2.69
79 80 0.392193 CTGCTGGGCGTCTCTTTGAT 60.392 55.000 0.00 0.00 0.00 2.57
80 81 0.674581 TGCTGGGCGTCTCTTTGATG 60.675 55.000 0.00 0.00 34.89 3.07
81 82 0.674895 GCTGGGCGTCTCTTTGATGT 60.675 55.000 0.00 0.00 34.29 3.06
82 83 1.363744 CTGGGCGTCTCTTTGATGTC 58.636 55.000 0.00 0.00 35.66 3.06
84 85 1.084370 GGGCGTCTCTTTGATGTCCG 61.084 60.000 0.00 0.00 45.31 4.79
85 86 0.108804 GGCGTCTCTTTGATGTCCGA 60.109 55.000 0.00 0.00 34.29 4.55
86 87 1.272781 GCGTCTCTTTGATGTCCGAG 58.727 55.000 0.00 0.00 34.29 4.63
87 88 1.272781 CGTCTCTTTGATGTCCGAGC 58.727 55.000 0.00 0.00 0.00 5.03
88 89 1.402852 CGTCTCTTTGATGTCCGAGCA 60.403 52.381 0.00 0.00 0.00 4.26
89 90 1.996191 GTCTCTTTGATGTCCGAGCAC 59.004 52.381 0.00 0.00 0.00 4.40
90 91 0.994995 CTCTTTGATGTCCGAGCACG 59.005 55.000 0.00 0.00 39.43 5.34
91 92 0.317160 TCTTTGATGTCCGAGCACGT 59.683 50.000 2.18 0.00 37.88 4.49
92 93 0.716108 CTTTGATGTCCGAGCACGTC 59.284 55.000 2.18 0.00 37.88 4.34
93 94 0.669318 TTTGATGTCCGAGCACGTCC 60.669 55.000 2.18 0.00 37.88 4.79
94 95 1.811645 TTGATGTCCGAGCACGTCCA 61.812 55.000 2.18 0.00 37.88 4.02
95 96 1.517257 GATGTCCGAGCACGTCCAG 60.517 63.158 2.18 0.00 37.88 3.86
96 97 1.934220 GATGTCCGAGCACGTCCAGA 61.934 60.000 2.18 0.00 37.88 3.86
97 98 2.126424 GTCCGAGCACGTCCAGAC 60.126 66.667 2.18 0.00 37.88 3.51
98 99 2.596338 TCCGAGCACGTCCAGACA 60.596 61.111 2.18 0.00 37.88 3.41
99 100 1.977009 TCCGAGCACGTCCAGACAT 60.977 57.895 2.18 0.00 37.88 3.06
100 101 0.678684 TCCGAGCACGTCCAGACATA 60.679 55.000 2.18 0.00 37.88 2.29
101 102 0.525668 CCGAGCACGTCCAGACATAC 60.526 60.000 2.18 0.00 37.88 2.39
102 103 0.170339 CGAGCACGTCCAGACATACA 59.830 55.000 0.00 0.00 34.56 2.29
103 104 1.402325 CGAGCACGTCCAGACATACAA 60.402 52.381 0.00 0.00 34.56 2.41
104 105 2.683968 GAGCACGTCCAGACATACAAA 58.316 47.619 0.00 0.00 0.00 2.83
105 106 2.668457 GAGCACGTCCAGACATACAAAG 59.332 50.000 0.00 0.00 0.00 2.77
106 107 1.732259 GCACGTCCAGACATACAAAGG 59.268 52.381 0.00 0.00 0.00 3.11
107 108 2.611971 GCACGTCCAGACATACAAAGGA 60.612 50.000 0.00 0.00 0.00 3.36
108 109 3.254060 CACGTCCAGACATACAAAGGAG 58.746 50.000 0.00 0.00 0.00 3.69
109 110 3.056821 CACGTCCAGACATACAAAGGAGA 60.057 47.826 0.00 0.00 0.00 3.71
110 111 3.576982 ACGTCCAGACATACAAAGGAGAA 59.423 43.478 0.00 0.00 0.00 2.87
111 112 4.039973 ACGTCCAGACATACAAAGGAGAAA 59.960 41.667 0.00 0.00 0.00 2.52
112 113 5.178797 CGTCCAGACATACAAAGGAGAAAT 58.821 41.667 0.00 0.00 0.00 2.17
113 114 5.643777 CGTCCAGACATACAAAGGAGAAATT 59.356 40.000 0.00 0.00 0.00 1.82
114 115 6.402550 CGTCCAGACATACAAAGGAGAAATTG 60.403 42.308 0.00 0.00 0.00 2.32
115 116 5.945784 TCCAGACATACAAAGGAGAAATTGG 59.054 40.000 0.00 0.00 0.00 3.16
116 117 5.393461 CCAGACATACAAAGGAGAAATTGGC 60.393 44.000 0.00 0.00 0.00 4.52
117 118 5.416952 CAGACATACAAAGGAGAAATTGGCT 59.583 40.000 0.00 0.00 0.00 4.75
118 119 6.012745 AGACATACAAAGGAGAAATTGGCTT 58.987 36.000 0.00 0.00 0.00 4.35
119 120 6.151817 AGACATACAAAGGAGAAATTGGCTTC 59.848 38.462 0.00 0.00 0.00 3.86
120 121 5.774690 ACATACAAAGGAGAAATTGGCTTCA 59.225 36.000 0.00 0.00 0.00 3.02
121 122 6.267471 ACATACAAAGGAGAAATTGGCTTCAA 59.733 34.615 0.00 0.00 34.56 2.69
122 123 4.948847 ACAAAGGAGAAATTGGCTTCAAC 58.051 39.130 0.00 0.00 32.63 3.18
123 124 4.202253 ACAAAGGAGAAATTGGCTTCAACC 60.202 41.667 0.00 0.00 32.63 3.77
124 125 3.532641 AGGAGAAATTGGCTTCAACCT 57.467 42.857 0.00 0.00 32.97 3.50
125 126 3.849527 AGGAGAAATTGGCTTCAACCTT 58.150 40.909 0.00 0.00 33.57 3.50
126 127 3.575687 AGGAGAAATTGGCTTCAACCTTG 59.424 43.478 0.00 0.00 33.57 3.61
127 128 3.573967 GGAGAAATTGGCTTCAACCTTGA 59.426 43.478 0.00 0.00 32.63 3.02
128 129 4.039124 GGAGAAATTGGCTTCAACCTTGAA 59.961 41.667 0.68 0.68 44.31 2.69
129 130 5.453198 GGAGAAATTGGCTTCAACCTTGAAA 60.453 40.000 2.25 0.00 45.61 2.69
130 131 5.988287 AGAAATTGGCTTCAACCTTGAAAA 58.012 33.333 2.25 0.00 45.61 2.29
131 132 6.594744 AGAAATTGGCTTCAACCTTGAAAAT 58.405 32.000 2.25 0.00 45.61 1.82
132 133 6.484308 AGAAATTGGCTTCAACCTTGAAAATG 59.516 34.615 2.25 0.00 45.61 2.32
133 134 5.549742 ATTGGCTTCAACCTTGAAAATGA 57.450 34.783 2.25 0.00 45.61 2.57
134 135 4.320608 TGGCTTCAACCTTGAAAATGAC 57.679 40.909 2.25 0.00 45.61 3.06
135 136 3.069443 TGGCTTCAACCTTGAAAATGACC 59.931 43.478 2.25 0.98 45.61 4.02
136 137 3.321968 GGCTTCAACCTTGAAAATGACCT 59.678 43.478 2.25 0.00 45.61 3.85
137 138 4.522789 GGCTTCAACCTTGAAAATGACCTA 59.477 41.667 2.25 0.00 45.61 3.08
138 139 5.010617 GGCTTCAACCTTGAAAATGACCTAA 59.989 40.000 2.25 0.00 45.61 2.69
139 140 6.462347 GGCTTCAACCTTGAAAATGACCTAAA 60.462 38.462 2.25 0.00 45.61 1.85
140 141 7.154656 GCTTCAACCTTGAAAATGACCTAAAT 58.845 34.615 2.25 0.00 45.61 1.40
141 142 7.657354 GCTTCAACCTTGAAAATGACCTAAATT 59.343 33.333 2.25 0.00 45.61 1.82
177 178 9.811995 ATTCATTTATATGCATGCATTATGACC 57.188 29.630 36.23 0.00 39.21 4.02
178 179 7.774134 TCATTTATATGCATGCATTATGACCC 58.226 34.615 36.23 0.00 39.21 4.46
179 180 5.816449 TTATATGCATGCATTATGACCCG 57.184 39.130 36.23 0.00 39.21 5.28
180 181 1.985473 ATGCATGCATTATGACCCGT 58.015 45.000 27.46 1.89 39.21 5.28
181 182 2.629336 TGCATGCATTATGACCCGTA 57.371 45.000 18.46 0.00 39.21 4.02
182 183 2.493035 TGCATGCATTATGACCCGTAG 58.507 47.619 18.46 0.00 39.21 3.51
183 184 1.197721 GCATGCATTATGACCCGTAGC 59.802 52.381 14.21 0.00 39.21 3.58
184 185 2.493035 CATGCATTATGACCCGTAGCA 58.507 47.619 0.00 0.00 39.21 3.49
185 186 2.700722 TGCATTATGACCCGTAGCAA 57.299 45.000 0.00 0.00 0.00 3.91
186 187 2.285083 TGCATTATGACCCGTAGCAAC 58.715 47.619 0.00 0.00 0.00 4.17
187 188 2.093181 TGCATTATGACCCGTAGCAACT 60.093 45.455 0.00 0.00 0.00 3.16
188 189 3.133183 TGCATTATGACCCGTAGCAACTA 59.867 43.478 0.00 0.00 0.00 2.24
189 190 3.741344 GCATTATGACCCGTAGCAACTAG 59.259 47.826 0.00 0.00 0.00 2.57
190 191 3.447918 TTATGACCCGTAGCAACTAGC 57.552 47.619 0.00 0.00 46.19 3.42
246 247 2.743928 GGCTGCAACGGGAGTCAG 60.744 66.667 0.50 0.00 46.69 3.51
282 283 2.415491 GGTTGAAGCCCGAAAGCATAAC 60.415 50.000 0.00 0.00 34.23 1.89
300 301 0.114954 ACCATGGGCTTTGGTGTCAT 59.885 50.000 18.09 0.00 45.71 3.06
301 302 1.357420 ACCATGGGCTTTGGTGTCATA 59.643 47.619 18.09 0.00 45.71 2.15
350 351 1.341531 CTAGGACCGCTGTAATGGAGG 59.658 57.143 0.00 0.00 0.00 4.30
352 353 0.105039 GGACCGCTGTAATGGAGGAG 59.895 60.000 0.00 0.00 0.00 3.69
353 354 1.112113 GACCGCTGTAATGGAGGAGA 58.888 55.000 0.00 0.00 0.00 3.71
354 355 1.067821 GACCGCTGTAATGGAGGAGAG 59.932 57.143 0.00 0.00 0.00 3.20
360 361 1.342076 TGTAATGGAGGAGAGCGGAGT 60.342 52.381 0.00 0.00 0.00 3.85
370 373 1.402613 GAGAGCGGAGTCCTTCTGTAC 59.597 57.143 15.51 1.36 34.46 2.90
935 941 2.437343 GCGCCTTCGAGTTCGTCTG 61.437 63.158 0.00 0.00 40.80 3.51
996 1002 1.711206 GTTTTTCGACCTCTCCTCCG 58.289 55.000 0.00 0.00 0.00 4.63
1111 1120 4.464008 GGTGCCATTTGATTCCTGAGATA 58.536 43.478 0.00 0.00 0.00 1.98
1126 1135 5.896106 TCCTGAGATAGAGATGAGAAGCAAA 59.104 40.000 0.00 0.00 0.00 3.68
1422 1439 1.633432 AGTTAATGCACCTACTGCCCA 59.367 47.619 0.00 0.00 46.51 5.36
1480 1497 3.009723 CTGGTACTGTATTTGGTGCCTG 58.990 50.000 0.00 0.00 38.66 4.85
1500 1517 7.001674 TGCCTGTCTTAAGGTAAAATCTTCAA 58.998 34.615 1.85 0.00 39.75 2.69
1734 1767 0.982852 TGGAGGGTGGCTGATCGAAT 60.983 55.000 0.00 0.00 0.00 3.34
1749 1782 6.143758 GCTGATCGAATCTAAGTTCTAGCAAG 59.856 42.308 0.00 0.00 0.00 4.01
1946 1979 8.983702 TGTTGGTACCCAAGGTATTATATTTC 57.016 34.615 10.07 0.00 44.82 2.17
2004 2037 4.515191 TCAGTCTGAAATGGAACCTTTTCG 59.485 41.667 19.71 15.93 40.64 3.46
2020 2053 9.113876 GAACCTTTTCGTGTGTAAAATATGAAG 57.886 33.333 0.00 0.00 0.00 3.02
2130 2163 8.777413 GCTGATGAATAATGTTCTAGCATTGTA 58.223 33.333 6.00 0.00 39.20 2.41
2424 2463 0.610687 AGGCTTGACTACAGACCAGC 59.389 55.000 0.00 0.00 0.00 4.85
2468 2507 9.057089 CAGATTATTCTTGGAAATACCTACCAC 57.943 37.037 0.00 0.00 39.86 4.16
2833 2873 5.413833 AGTTGCTCTACACATCAAATCTTGG 59.586 40.000 0.00 0.00 0.00 3.61
2874 2914 8.491331 AAATTTGAAACATGTAGTTGTTTGCT 57.509 26.923 0.00 0.00 46.84 3.91
2875 2915 9.593134 AAATTTGAAACATGTAGTTGTTTGCTA 57.407 25.926 0.00 0.00 46.84 3.49
2876 2916 7.979115 TTTGAAACATGTAGTTGTTTGCTAC 57.021 32.000 0.00 0.00 46.84 3.58
2877 2917 6.935741 TGAAACATGTAGTTGTTTGCTACT 57.064 33.333 0.00 0.00 46.84 2.57
2878 2918 6.954944 TGAAACATGTAGTTGTTTGCTACTC 58.045 36.000 0.00 0.00 46.84 2.59
2879 2919 5.941948 AACATGTAGTTGTTTGCTACTCC 57.058 39.130 0.00 0.00 39.49 3.85
2880 2920 4.324267 ACATGTAGTTGTTTGCTACTCCC 58.676 43.478 0.00 0.00 39.47 4.30
2881 2921 4.041691 ACATGTAGTTGTTTGCTACTCCCT 59.958 41.667 0.00 0.00 39.47 4.20
2882 2922 4.699925 TGTAGTTGTTTGCTACTCCCTT 57.300 40.909 0.00 0.00 39.47 3.95
2883 2923 4.638304 TGTAGTTGTTTGCTACTCCCTTC 58.362 43.478 0.00 0.00 39.47 3.46
2884 2924 4.347000 TGTAGTTGTTTGCTACTCCCTTCT 59.653 41.667 0.00 0.00 39.47 2.85
2885 2925 4.439253 AGTTGTTTGCTACTCCCTTCTT 57.561 40.909 0.00 0.00 0.00 2.52
2886 2926 4.793201 AGTTGTTTGCTACTCCCTTCTTT 58.207 39.130 0.00 0.00 0.00 2.52
2887 2927 4.822350 AGTTGTTTGCTACTCCCTTCTTTC 59.178 41.667 0.00 0.00 0.00 2.62
2888 2928 3.751518 TGTTTGCTACTCCCTTCTTTCC 58.248 45.455 0.00 0.00 0.00 3.13
2889 2929 3.137544 TGTTTGCTACTCCCTTCTTTCCA 59.862 43.478 0.00 0.00 0.00 3.53
2890 2930 4.142038 GTTTGCTACTCCCTTCTTTCCAA 58.858 43.478 0.00 0.00 0.00 3.53
2891 2931 4.447138 TTGCTACTCCCTTCTTTCCAAA 57.553 40.909 0.00 0.00 0.00 3.28
2892 2932 4.657814 TGCTACTCCCTTCTTTCCAAAT 57.342 40.909 0.00 0.00 0.00 2.32
2893 2933 4.998051 TGCTACTCCCTTCTTTCCAAATT 58.002 39.130 0.00 0.00 0.00 1.82
2894 2934 6.134535 TGCTACTCCCTTCTTTCCAAATTA 57.865 37.500 0.00 0.00 0.00 1.40
2895 2935 5.944007 TGCTACTCCCTTCTTTCCAAATTAC 59.056 40.000 0.00 0.00 0.00 1.89
2896 2936 6.181190 GCTACTCCCTTCTTTCCAAATTACT 58.819 40.000 0.00 0.00 0.00 2.24
2897 2937 6.316640 GCTACTCCCTTCTTTCCAAATTACTC 59.683 42.308 0.00 0.00 0.00 2.59
2898 2938 5.246307 ACTCCCTTCTTTCCAAATTACTCG 58.754 41.667 0.00 0.00 0.00 4.18
2899 2939 5.221864 ACTCCCTTCTTTCCAAATTACTCGT 60.222 40.000 0.00 0.00 0.00 4.18
2900 2940 5.243207 TCCCTTCTTTCCAAATTACTCGTC 58.757 41.667 0.00 0.00 0.00 4.20
2901 2941 4.092968 CCCTTCTTTCCAAATTACTCGTCG 59.907 45.833 0.00 0.00 0.00 5.12
2902 2942 4.689345 CCTTCTTTCCAAATTACTCGTCGT 59.311 41.667 0.00 0.00 0.00 4.34
2903 2943 5.389516 CCTTCTTTCCAAATTACTCGTCGTG 60.390 44.000 0.00 0.00 0.00 4.35
2904 2944 3.991773 TCTTTCCAAATTACTCGTCGTGG 59.008 43.478 0.00 0.00 0.00 4.94
2905 2945 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
2906 2946 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2907 2947 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2908 2948 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2909 2949 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2910 2950 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2911 2951 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2912 2952 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2913 2953 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2914 2954 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2915 2955 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2916 2956 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2917 2957 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2918 2958 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2919 2959 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2920 2960 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTTA 59.989 33.333 0.00 0.00 0.00 1.40
2921 2961 7.692088 TCGTCGTGGTTTTAGTTCAAATTTAA 58.308 30.769 0.00 0.00 0.00 1.52
2922 2962 8.180267 TCGTCGTGGTTTTAGTTCAAATTTAAA 58.820 29.630 0.00 0.00 0.00 1.52
2923 2963 8.254470 CGTCGTGGTTTTAGTTCAAATTTAAAC 58.746 33.333 0.00 0.00 0.00 2.01
2924 2964 9.292846 GTCGTGGTTTTAGTTCAAATTTAAACT 57.707 29.630 11.45 11.45 39.07 2.66
2935 2975 9.292846 AGTTCAAATTTAAACTAAAACCACGAC 57.707 29.630 4.83 0.00 34.05 4.34
2936 2976 7.895582 TCAAATTTAAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
2937 2977 6.911511 TCAAATTTAAACTAAAACCACGACGG 59.088 34.615 0.00 0.00 42.50 4.79
2938 2978 4.809815 TTTAAACTAAAACCACGACGGG 57.190 40.909 0.00 0.00 40.22 5.28
2939 2979 2.330440 AAACTAAAACCACGACGGGT 57.670 45.000 0.00 0.49 45.04 5.28
2940 2980 3.467374 AAACTAAAACCACGACGGGTA 57.533 42.857 8.20 0.00 41.32 3.69
2941 2981 3.467374 AACTAAAACCACGACGGGTAA 57.533 42.857 8.20 0.00 41.32 2.85
2942 2982 3.683365 ACTAAAACCACGACGGGTAAT 57.317 42.857 8.20 4.11 41.32 1.89
2943 2983 4.006780 ACTAAAACCACGACGGGTAATT 57.993 40.909 8.20 9.06 41.32 1.40
2944 2984 4.388485 ACTAAAACCACGACGGGTAATTT 58.612 39.130 8.20 8.64 41.32 1.82
2945 2985 3.629438 AAAACCACGACGGGTAATTTG 57.371 42.857 8.20 0.00 41.32 2.32
2946 2986 1.525941 AACCACGACGGGTAATTTGG 58.474 50.000 8.20 3.03 41.32 3.28
2947 2987 0.686224 ACCACGACGGGTAATTTGGA 59.314 50.000 6.26 0.00 40.07 3.53
2948 2988 1.072015 ACCACGACGGGTAATTTGGAA 59.928 47.619 6.26 0.00 40.07 3.53
2949 2989 1.465777 CCACGACGGGTAATTTGGAAC 59.534 52.381 0.00 0.00 0.00 3.62
2950 2990 1.127213 CACGACGGGTAATTTGGAACG 59.873 52.381 0.00 0.00 0.00 3.95
2951 2991 0.722848 CGACGGGTAATTTGGAACGG 59.277 55.000 0.00 0.00 0.00 4.44
2952 2992 1.672441 CGACGGGTAATTTGGAACGGA 60.672 52.381 0.00 0.00 0.00 4.69
2953 2993 2.004733 GACGGGTAATTTGGAACGGAG 58.995 52.381 0.00 0.00 0.00 4.63
2954 2994 1.339342 ACGGGTAATTTGGAACGGAGG 60.339 52.381 0.00 0.00 0.00 4.30
2955 2995 1.758936 GGGTAATTTGGAACGGAGGG 58.241 55.000 0.00 0.00 0.00 4.30
2956 2996 1.282738 GGGTAATTTGGAACGGAGGGA 59.717 52.381 0.00 0.00 0.00 4.20
2957 2997 2.640184 GGTAATTTGGAACGGAGGGAG 58.360 52.381 0.00 0.00 0.00 4.30
3086 3126 7.281040 ACCATTGGCATGATCACTTATTTAG 57.719 36.000 1.54 0.00 31.07 1.85
3241 3281 6.207810 AGCTACCTACTATCTCATACACTTGC 59.792 42.308 0.00 0.00 0.00 4.01
3256 3296 5.679734 ACACTTGCTCTTCATAAACACAG 57.320 39.130 0.00 0.00 0.00 3.66
3940 3987 4.219944 TCTGTGTACAATCTACAGTCACCC 59.780 45.833 0.00 0.00 41.82 4.61
4093 4142 3.820590 CACTTGTGTGCCCGTTCA 58.179 55.556 0.00 0.00 37.38 3.18
4243 4292 5.513094 GGATTGATAGGTGCATAGCTGGTAA 60.513 44.000 0.00 0.00 35.90 2.85
4279 4328 4.218200 TGTGACTCTTGGCCAAATTGTATG 59.782 41.667 20.91 5.93 0.00 2.39
4324 4373 9.753674 TCAACTATTTCCCATCTTCAAGTTAAT 57.246 29.630 0.00 0.00 0.00 1.40
5031 5081 6.368791 GCCGATTATAGATTGTGCTTGATACA 59.631 38.462 0.00 0.00 0.00 2.29
5452 5553 2.072298 GAACTCACATGAGAGGTGTGC 58.928 52.381 21.95 2.75 45.01 4.57
5601 5715 8.988934 TCTAAATTAACTGTGCTTGTTGTAGAG 58.011 33.333 0.00 0.00 0.00 2.43
5908 6034 6.377146 AGTTCTGTAACATGGTTGTCTTGTTT 59.623 34.615 0.00 0.00 41.82 2.83
5922 6048 4.142403 TGTCTTGTTTTTCAGGTCTGCAAG 60.142 41.667 8.16 8.16 34.80 4.01
6155 6281 4.631813 GCGATTTCCAGAGTATGTTGTCTT 59.368 41.667 0.00 0.00 0.00 3.01
6239 6365 3.610114 GCTGACATGTTTGCAGATTCGTT 60.610 43.478 15.27 0.00 32.24 3.85
6419 6549 8.882415 TCTTTCTTAGTAGTTTGTGTTACCTG 57.118 34.615 0.00 0.00 0.00 4.00
6542 6672 3.357079 CCGACCAACTGCCAGCAC 61.357 66.667 0.00 0.00 0.00 4.40
6648 6778 4.143543 TCATTACGGATACCACGATACCA 58.856 43.478 0.00 0.00 34.93 3.25
6655 6785 3.383825 GGATACCACGATACCAGTTGACT 59.616 47.826 0.00 0.00 0.00 3.41
6662 6792 4.022242 CACGATACCAGTTGACTATAGGGG 60.022 50.000 4.43 0.00 0.00 4.79
6795 6930 6.491403 AGAATTTTCCAACAGTATGCTGAAGT 59.509 34.615 18.40 0.00 45.28 3.01
6796 6931 5.689383 TTTTCCAACAGTATGCTGAAGTC 57.311 39.130 18.40 0.00 45.28 3.01
6837 6972 9.483489 TTTGATAGTCTCCAAGGTGTTATAGTA 57.517 33.333 0.00 0.00 0.00 1.82
6838 6973 8.461249 TGATAGTCTCCAAGGTGTTATAGTAC 57.539 38.462 0.00 0.00 0.00 2.73
6876 7192 4.667420 GCAAGCTGCTGCAAATGT 57.333 50.000 18.42 0.00 42.17 2.71
6901 7218 2.358737 GCAAGGACAGTCCACGGG 60.359 66.667 22.31 8.68 39.61 5.28
6973 7291 4.681744 GCAGGTCATTTTGTTTCACTGAA 58.318 39.130 0.00 0.00 0.00 3.02
6974 7292 4.504097 GCAGGTCATTTTGTTTCACTGAAC 59.496 41.667 0.00 0.00 0.00 3.18
6985 7312 2.084610 TCACTGAACATGGCTTCTCG 57.915 50.000 0.00 0.00 0.00 4.04
6988 7315 1.895798 ACTGAACATGGCTTCTCGAGA 59.104 47.619 12.08 12.08 0.00 4.04
6997 7324 1.271102 GGCTTCTCGAGACTTCACACT 59.729 52.381 16.36 0.00 0.00 3.55
7052 7383 7.271511 TCTTTGTTGGCTTGAATGTGTATTTT 58.728 30.769 0.00 0.00 0.00 1.82
7058 7389 5.245751 TGGCTTGAATGTGTATTTTGTGGAT 59.754 36.000 0.00 0.00 0.00 3.41
7066 7397 9.260002 GAATGTGTATTTTGTGGATTTCTTTGT 57.740 29.630 0.00 0.00 0.00 2.83
7068 7399 9.912634 ATGTGTATTTTGTGGATTTCTTTGTAG 57.087 29.630 0.00 0.00 0.00 2.74
7076 7407 5.705441 TGTGGATTTCTTTGTAGTGCTTAGG 59.295 40.000 0.00 0.00 0.00 2.69
7082 7413 5.043737 TCTTTGTAGTGCTTAGGGTTTGT 57.956 39.130 0.00 0.00 0.00 2.83
7083 7414 5.442391 TCTTTGTAGTGCTTAGGGTTTGTT 58.558 37.500 0.00 0.00 0.00 2.83
7110 7441 1.381056 ACTGGCAGGTGGTTTTGCA 60.381 52.632 20.34 0.00 42.02 4.08
7117 7448 1.140804 GGTGGTTTTGCAACGCTGT 59.859 52.632 0.00 0.00 33.13 4.40
7126 7457 1.353804 GCAACGCTGTCGGTTTCAA 59.646 52.632 0.00 0.00 40.69 2.69
7217 7549 1.490693 CCATTTCTCATCGGACGGCG 61.491 60.000 4.80 4.80 0.00 6.46
7221 7553 3.822192 CTCATCGGACGGCGGACA 61.822 66.667 13.24 0.00 0.00 4.02
7372 7919 1.142667 TGAGCACCAACACAGATTCCA 59.857 47.619 0.00 0.00 0.00 3.53
7448 7996 1.963338 GACACAGCGCTGCTCCTTT 60.963 57.895 36.28 14.06 36.40 3.11
7449 7997 0.670546 GACACAGCGCTGCTCCTTTA 60.671 55.000 36.28 0.00 36.40 1.85
7450 7998 0.951040 ACACAGCGCTGCTCCTTTAC 60.951 55.000 36.28 0.00 36.40 2.01
7504 8052 2.046892 ACGGCCTCACATGTCAGC 60.047 61.111 0.00 0.00 0.00 4.26
7555 8103 4.380655 GCAGATTCCGCCGTTAGTATCTAT 60.381 45.833 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.545678 CCCAATTCCATCCTAAATGTGGA 58.454 43.478 0.00 0.00 40.13 4.02
1 2 3.642848 CCCCAATTCCATCCTAAATGTGG 59.357 47.826 0.00 0.00 0.00 4.17
2 3 3.642848 CCCCCAATTCCATCCTAAATGTG 59.357 47.826 0.00 0.00 0.00 3.21
3 4 3.535590 TCCCCCAATTCCATCCTAAATGT 59.464 43.478 0.00 0.00 0.00 2.71
4 5 4.154942 CTCCCCCAATTCCATCCTAAATG 58.845 47.826 0.00 0.00 0.00 2.32
5 6 3.438520 GCTCCCCCAATTCCATCCTAAAT 60.439 47.826 0.00 0.00 0.00 1.40
6 7 2.091333 GCTCCCCCAATTCCATCCTAAA 60.091 50.000 0.00 0.00 0.00 1.85
7 8 1.499007 GCTCCCCCAATTCCATCCTAA 59.501 52.381 0.00 0.00 0.00 2.69
8 9 1.149101 GCTCCCCCAATTCCATCCTA 58.851 55.000 0.00 0.00 0.00 2.94
9 10 1.659035 GGCTCCCCCAATTCCATCCT 61.659 60.000 0.00 0.00 0.00 3.24
10 11 1.152461 GGCTCCCCCAATTCCATCC 60.152 63.158 0.00 0.00 0.00 3.51
11 12 4.607080 GGCTCCCCCAATTCCATC 57.393 61.111 0.00 0.00 0.00 3.51
21 22 2.835156 GTCTAGATATTCTGGGCTCCCC 59.165 54.545 1.89 0.00 45.71 4.81
22 23 2.835156 GGTCTAGATATTCTGGGCTCCC 59.165 54.545 0.00 0.00 29.80 4.30
23 24 2.494073 CGGTCTAGATATTCTGGGCTCC 59.506 54.545 0.00 0.00 29.80 4.70
24 25 3.158676 ACGGTCTAGATATTCTGGGCTC 58.841 50.000 0.00 0.00 29.80 4.70
25 26 3.246416 ACGGTCTAGATATTCTGGGCT 57.754 47.619 0.00 0.00 29.80 5.19
26 27 3.321111 TCAACGGTCTAGATATTCTGGGC 59.679 47.826 0.00 0.00 0.00 5.36
27 28 5.531122 TTCAACGGTCTAGATATTCTGGG 57.469 43.478 0.00 0.00 0.00 4.45
28 29 8.338259 CAAAATTCAACGGTCTAGATATTCTGG 58.662 37.037 0.00 0.00 0.00 3.86
29 30 8.338259 CCAAAATTCAACGGTCTAGATATTCTG 58.662 37.037 0.00 0.00 0.00 3.02
30 31 8.265055 TCCAAAATTCAACGGTCTAGATATTCT 58.735 33.333 0.00 0.00 0.00 2.40
31 32 8.433421 TCCAAAATTCAACGGTCTAGATATTC 57.567 34.615 0.00 0.00 0.00 1.75
32 33 8.801882 TTCCAAAATTCAACGGTCTAGATATT 57.198 30.769 0.00 0.00 0.00 1.28
33 34 7.012421 GCTTCCAAAATTCAACGGTCTAGATAT 59.988 37.037 0.00 0.00 0.00 1.63
34 35 6.315393 GCTTCCAAAATTCAACGGTCTAGATA 59.685 38.462 0.00 0.00 0.00 1.98
35 36 5.123979 GCTTCCAAAATTCAACGGTCTAGAT 59.876 40.000 0.00 0.00 0.00 1.98
36 37 4.454504 GCTTCCAAAATTCAACGGTCTAGA 59.545 41.667 0.00 0.00 0.00 2.43
37 38 4.379499 GGCTTCCAAAATTCAACGGTCTAG 60.379 45.833 0.00 0.00 0.00 2.43
38 39 3.504520 GGCTTCCAAAATTCAACGGTCTA 59.495 43.478 0.00 0.00 0.00 2.59
39 40 2.296190 GGCTTCCAAAATTCAACGGTCT 59.704 45.455 0.00 0.00 0.00 3.85
40 41 2.296190 AGGCTTCCAAAATTCAACGGTC 59.704 45.455 0.00 0.00 0.00 4.79
41 42 2.035832 CAGGCTTCCAAAATTCAACGGT 59.964 45.455 0.00 0.00 0.00 4.83
42 43 2.676076 CAGGCTTCCAAAATTCAACGG 58.324 47.619 0.00 0.00 0.00 4.44
43 44 2.061028 GCAGGCTTCCAAAATTCAACG 58.939 47.619 0.00 0.00 0.00 4.10
44 45 3.062042 CAGCAGGCTTCCAAAATTCAAC 58.938 45.455 0.00 0.00 0.00 3.18
45 46 2.037511 CCAGCAGGCTTCCAAAATTCAA 59.962 45.455 0.00 0.00 0.00 2.69
46 47 1.619827 CCAGCAGGCTTCCAAAATTCA 59.380 47.619 0.00 0.00 0.00 2.57
47 48 1.066645 CCCAGCAGGCTTCCAAAATTC 60.067 52.381 0.00 0.00 0.00 2.17
48 49 0.978907 CCCAGCAGGCTTCCAAAATT 59.021 50.000 0.00 0.00 0.00 1.82
49 50 2.674958 CCCAGCAGGCTTCCAAAAT 58.325 52.632 0.00 0.00 0.00 1.82
50 51 4.196372 CCCAGCAGGCTTCCAAAA 57.804 55.556 0.00 0.00 0.00 2.44
59 60 2.037136 CAAAGAGACGCCCAGCAGG 61.037 63.158 0.00 0.00 39.47 4.85
60 61 0.392193 ATCAAAGAGACGCCCAGCAG 60.392 55.000 0.00 0.00 0.00 4.24
61 62 0.674581 CATCAAAGAGACGCCCAGCA 60.675 55.000 0.00 0.00 0.00 4.41
62 63 0.674895 ACATCAAAGAGACGCCCAGC 60.675 55.000 0.00 0.00 0.00 4.85
63 64 1.363744 GACATCAAAGAGACGCCCAG 58.636 55.000 0.00 0.00 0.00 4.45
64 65 0.036388 GGACATCAAAGAGACGCCCA 60.036 55.000 0.00 0.00 0.00 5.36
65 66 1.084370 CGGACATCAAAGAGACGCCC 61.084 60.000 0.00 0.00 0.00 6.13
66 67 0.108804 TCGGACATCAAAGAGACGCC 60.109 55.000 0.00 0.00 0.00 5.68
67 68 1.272781 CTCGGACATCAAAGAGACGC 58.727 55.000 0.00 0.00 32.84 5.19
68 69 1.272781 GCTCGGACATCAAAGAGACG 58.727 55.000 0.00 0.00 32.84 4.18
69 70 1.996191 GTGCTCGGACATCAAAGAGAC 59.004 52.381 0.00 0.00 32.84 3.36
70 71 1.402852 CGTGCTCGGACATCAAAGAGA 60.403 52.381 0.00 0.00 32.84 3.10
71 72 0.994995 CGTGCTCGGACATCAAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
72 73 0.317160 ACGTGCTCGGACATCAAAGA 59.683 50.000 13.32 0.00 41.85 2.52
73 74 0.716108 GACGTGCTCGGACATCAAAG 59.284 55.000 13.32 0.00 41.85 2.77
74 75 0.669318 GGACGTGCTCGGACATCAAA 60.669 55.000 13.32 0.00 41.85 2.69
75 76 1.080093 GGACGTGCTCGGACATCAA 60.080 57.895 13.32 0.00 41.85 2.57
76 77 2.212900 CTGGACGTGCTCGGACATCA 62.213 60.000 13.32 2.72 41.85 3.07
77 78 1.517257 CTGGACGTGCTCGGACATC 60.517 63.158 13.32 0.61 41.85 3.06
78 79 1.977009 TCTGGACGTGCTCGGACAT 60.977 57.895 13.32 0.00 41.85 3.06
79 80 2.596338 TCTGGACGTGCTCGGACA 60.596 61.111 13.32 9.63 41.85 4.02
80 81 2.126424 GTCTGGACGTGCTCGGAC 60.126 66.667 13.32 10.18 41.85 4.79
81 82 0.678684 TATGTCTGGACGTGCTCGGA 60.679 55.000 13.32 1.24 41.85 4.55
82 83 0.525668 GTATGTCTGGACGTGCTCGG 60.526 60.000 13.32 0.00 41.85 4.63
83 84 0.170339 TGTATGTCTGGACGTGCTCG 59.830 55.000 8.99 6.63 43.34 5.03
84 85 2.363788 TTGTATGTCTGGACGTGCTC 57.636 50.000 8.99 0.00 34.61 4.26
85 86 2.612972 CCTTTGTATGTCTGGACGTGCT 60.613 50.000 8.99 0.00 34.61 4.40
86 87 1.732259 CCTTTGTATGTCTGGACGTGC 59.268 52.381 0.00 0.00 34.20 5.34
87 88 3.056821 TCTCCTTTGTATGTCTGGACGTG 60.057 47.826 0.00 0.00 0.00 4.49
88 89 3.162666 TCTCCTTTGTATGTCTGGACGT 58.837 45.455 0.00 0.00 0.00 4.34
89 90 3.868757 TCTCCTTTGTATGTCTGGACG 57.131 47.619 0.00 0.00 0.00 4.79
90 91 6.127897 CCAATTTCTCCTTTGTATGTCTGGAC 60.128 42.308 0.00 0.00 0.00 4.02
91 92 5.945784 CCAATTTCTCCTTTGTATGTCTGGA 59.054 40.000 0.00 0.00 0.00 3.86
92 93 5.393461 GCCAATTTCTCCTTTGTATGTCTGG 60.393 44.000 0.00 0.00 0.00 3.86
93 94 5.416952 AGCCAATTTCTCCTTTGTATGTCTG 59.583 40.000 0.00 0.00 0.00 3.51
94 95 5.574188 AGCCAATTTCTCCTTTGTATGTCT 58.426 37.500 0.00 0.00 0.00 3.41
95 96 5.904362 AGCCAATTTCTCCTTTGTATGTC 57.096 39.130 0.00 0.00 0.00 3.06
96 97 5.774690 TGAAGCCAATTTCTCCTTTGTATGT 59.225 36.000 0.00 0.00 0.00 2.29
97 98 6.271488 TGAAGCCAATTTCTCCTTTGTATG 57.729 37.500 0.00 0.00 0.00 2.39
98 99 6.295292 GGTTGAAGCCAATTTCTCCTTTGTAT 60.295 38.462 0.00 0.00 34.39 2.29
99 100 5.010617 GGTTGAAGCCAATTTCTCCTTTGTA 59.989 40.000 0.00 0.00 34.39 2.41
100 101 4.202253 GGTTGAAGCCAATTTCTCCTTTGT 60.202 41.667 0.00 0.00 34.39 2.83
101 102 4.039609 AGGTTGAAGCCAATTTCTCCTTTG 59.960 41.667 0.00 0.00 34.39 2.77
102 103 4.226384 AGGTTGAAGCCAATTTCTCCTTT 58.774 39.130 0.00 0.00 34.39 3.11
103 104 3.849527 AGGTTGAAGCCAATTTCTCCTT 58.150 40.909 0.00 0.00 34.39 3.36
104 105 3.532641 AGGTTGAAGCCAATTTCTCCT 57.467 42.857 0.00 0.00 34.39 3.69
105 106 3.573967 TCAAGGTTGAAGCCAATTTCTCC 59.426 43.478 0.00 0.00 34.39 3.71
106 107 4.853924 TCAAGGTTGAAGCCAATTTCTC 57.146 40.909 0.00 0.00 34.39 2.87
107 108 5.612725 TTTCAAGGTTGAAGCCAATTTCT 57.387 34.783 5.35 0.00 46.68 2.52
108 109 6.482973 TCATTTTCAAGGTTGAAGCCAATTTC 59.517 34.615 5.35 0.00 46.68 2.17
109 110 6.260714 GTCATTTTCAAGGTTGAAGCCAATTT 59.739 34.615 5.35 0.00 46.68 1.82
110 111 5.759763 GTCATTTTCAAGGTTGAAGCCAATT 59.240 36.000 5.35 0.00 46.68 2.32
111 112 5.299949 GTCATTTTCAAGGTTGAAGCCAAT 58.700 37.500 5.35 1.21 46.68 3.16
112 113 4.442753 GGTCATTTTCAAGGTTGAAGCCAA 60.443 41.667 5.35 0.00 46.68 4.52
113 114 3.069443 GGTCATTTTCAAGGTTGAAGCCA 59.931 43.478 5.35 0.00 46.68 4.75
114 115 3.321968 AGGTCATTTTCAAGGTTGAAGCC 59.678 43.478 5.35 5.15 46.68 4.35
115 116 4.590850 AGGTCATTTTCAAGGTTGAAGC 57.409 40.909 5.35 0.00 46.68 3.86
151 152 9.811995 GGTCATAATGCATGCATATAAATGAAT 57.188 29.630 32.36 16.25 35.31 2.57
152 153 8.252417 GGGTCATAATGCATGCATATAAATGAA 58.748 33.333 32.36 17.95 35.31 2.57
153 154 7.415429 CGGGTCATAATGCATGCATATAAATGA 60.415 37.037 32.36 29.07 35.31 2.57
154 155 6.693978 CGGGTCATAATGCATGCATATAAATG 59.306 38.462 32.36 27.65 35.31 2.32
155 156 6.377996 ACGGGTCATAATGCATGCATATAAAT 59.622 34.615 32.36 19.13 35.31 1.40
156 157 5.709631 ACGGGTCATAATGCATGCATATAAA 59.290 36.000 32.36 18.42 35.31 1.40
157 158 5.252547 ACGGGTCATAATGCATGCATATAA 58.747 37.500 32.36 20.80 35.31 0.98
158 159 4.842574 ACGGGTCATAATGCATGCATATA 58.157 39.130 32.36 24.10 35.31 0.86
159 160 3.689347 ACGGGTCATAATGCATGCATAT 58.311 40.909 32.36 22.90 35.31 1.78
160 161 3.138884 ACGGGTCATAATGCATGCATA 57.861 42.857 32.36 20.21 35.31 3.14
161 162 1.985473 ACGGGTCATAATGCATGCAT 58.015 45.000 27.46 27.46 38.46 3.96
162 163 2.493035 CTACGGGTCATAATGCATGCA 58.507 47.619 25.04 25.04 34.35 3.96
163 164 1.197721 GCTACGGGTCATAATGCATGC 59.802 52.381 11.82 11.82 34.35 4.06
164 165 2.493035 TGCTACGGGTCATAATGCATG 58.507 47.619 0.00 0.00 35.81 4.06
165 166 2.878406 GTTGCTACGGGTCATAATGCAT 59.122 45.455 0.00 0.00 0.00 3.96
166 167 2.093181 AGTTGCTACGGGTCATAATGCA 60.093 45.455 0.00 0.00 0.00 3.96
167 168 2.561569 AGTTGCTACGGGTCATAATGC 58.438 47.619 0.00 0.00 0.00 3.56
168 169 3.741344 GCTAGTTGCTACGGGTCATAATG 59.259 47.826 0.00 0.00 38.95 1.90
169 170 3.386726 TGCTAGTTGCTACGGGTCATAAT 59.613 43.478 0.00 0.00 43.37 1.28
170 171 2.761767 TGCTAGTTGCTACGGGTCATAA 59.238 45.455 0.00 0.00 43.37 1.90
171 172 2.380941 TGCTAGTTGCTACGGGTCATA 58.619 47.619 0.00 0.00 43.37 2.15
172 173 1.191535 TGCTAGTTGCTACGGGTCAT 58.808 50.000 0.00 0.00 43.37 3.06
173 174 0.970640 TTGCTAGTTGCTACGGGTCA 59.029 50.000 0.00 0.00 43.37 4.02
174 175 1.356938 GTTGCTAGTTGCTACGGGTC 58.643 55.000 0.00 0.00 43.37 4.46
175 176 3.527434 GTTGCTAGTTGCTACGGGT 57.473 52.632 0.00 0.00 43.37 5.28
179 180 2.365408 AGTCCGTTGCTAGTTGCTAC 57.635 50.000 1.46 1.46 42.47 3.58
180 181 2.036733 ACAAGTCCGTTGCTAGTTGCTA 59.963 45.455 0.00 0.00 40.15 3.49
181 182 1.202651 ACAAGTCCGTTGCTAGTTGCT 60.203 47.619 0.00 0.00 40.15 3.91
182 183 1.194772 GACAAGTCCGTTGCTAGTTGC 59.805 52.381 0.00 0.00 40.15 4.17
183 184 1.455786 CGACAAGTCCGTTGCTAGTTG 59.544 52.381 0.00 0.00 40.15 3.16
184 185 1.338973 TCGACAAGTCCGTTGCTAGTT 59.661 47.619 0.00 0.00 40.15 2.24
185 186 0.956633 TCGACAAGTCCGTTGCTAGT 59.043 50.000 0.00 0.00 40.15 2.57
186 187 2.279582 ATCGACAAGTCCGTTGCTAG 57.720 50.000 0.00 0.00 40.15 3.42
187 188 2.734606 CAAATCGACAAGTCCGTTGCTA 59.265 45.455 0.00 0.00 40.15 3.49
188 189 1.531149 CAAATCGACAAGTCCGTTGCT 59.469 47.619 0.00 0.00 40.15 3.91
189 190 1.529438 TCAAATCGACAAGTCCGTTGC 59.471 47.619 0.00 0.00 40.15 4.17
190 191 3.870723 TTCAAATCGACAAGTCCGTTG 57.129 42.857 0.00 0.00 42.48 4.10
193 194 4.084066 TGTCATTTCAAATCGACAAGTCCG 60.084 41.667 10.96 0.00 35.54 4.79
200 201 6.122850 TGGATCATGTCATTTCAAATCGAC 57.877 37.500 0.00 6.01 0.00 4.20
282 283 2.142356 TATGACACCAAAGCCCATGG 57.858 50.000 4.14 4.14 43.84 3.66
350 351 1.402613 GTACAGAAGGACTCCGCTCTC 59.597 57.143 0.82 0.00 0.00 3.20
352 353 0.456628 GGTACAGAAGGACTCCGCTC 59.543 60.000 0.00 0.00 0.00 5.03
353 354 1.313812 CGGTACAGAAGGACTCCGCT 61.314 60.000 0.00 0.00 0.00 5.52
354 355 1.139095 CGGTACAGAAGGACTCCGC 59.861 63.158 0.00 0.00 0.00 5.54
360 361 2.260247 CCGTGTCGGTACAGAAGGA 58.740 57.895 0.00 0.00 42.73 3.36
789 794 1.547372 GGCGGTAGGTCTTGTTGTAGA 59.453 52.381 0.00 0.00 0.00 2.59
790 795 1.405121 GGGCGGTAGGTCTTGTTGTAG 60.405 57.143 0.00 0.00 0.00 2.74
791 796 0.609662 GGGCGGTAGGTCTTGTTGTA 59.390 55.000 0.00 0.00 0.00 2.41
792 797 1.373812 GGGCGGTAGGTCTTGTTGT 59.626 57.895 0.00 0.00 0.00 3.32
910 916 3.929948 CTCGAAGGCGCGAATGGC 61.930 66.667 12.10 0.00 40.13 4.40
911 917 2.025359 GAACTCGAAGGCGCGAATGG 62.025 60.000 12.10 0.00 40.13 3.16
912 918 1.345176 GAACTCGAAGGCGCGAATG 59.655 57.895 12.10 0.00 40.13 2.67
935 941 0.933796 GCATTCTCAGTTAGCTCGGC 59.066 55.000 0.00 0.00 0.00 5.54
996 1002 4.778143 AACCGGAGCGCCATGGAC 62.778 66.667 18.40 6.50 0.00 4.02
1111 1120 2.744494 GCCGGATTTGCTTCTCATCTCT 60.744 50.000 5.05 0.00 0.00 3.10
1126 1135 0.879090 GAACAAAGAAACCGCCGGAT 59.121 50.000 11.71 0.00 0.00 4.18
1422 1439 2.365582 ACTCTGAAAAACACGTGCCTT 58.634 42.857 17.22 6.56 0.00 4.35
1734 1767 4.283467 TGTTCCTGCTTGCTAGAACTTAGA 59.717 41.667 20.22 6.18 39.45 2.10
1749 1782 8.986477 ACAAACTTTGATATTTATGTTCCTGC 57.014 30.769 8.55 0.00 0.00 4.85
1946 1979 4.615949 CAGAGAAATGGTACGAGATCCAG 58.384 47.826 0.00 0.00 37.14 3.86
2004 2037 8.574196 AAACAGCAACTTCATATTTTACACAC 57.426 30.769 0.00 0.00 0.00 3.82
2316 2355 4.082625 TGCAAGAATCACACACATCATTCC 60.083 41.667 0.00 0.00 0.00 3.01
2833 2873 6.660887 TCAAATTTTGCTCAAAAGTGGAAC 57.339 33.333 9.39 0.00 42.72 3.62
2874 2914 6.013984 ACGAGTAATTTGGAAAGAAGGGAGTA 60.014 38.462 0.00 0.00 0.00 2.59
2875 2915 5.221864 ACGAGTAATTTGGAAAGAAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
2876 2916 5.246307 ACGAGTAATTTGGAAAGAAGGGAG 58.754 41.667 0.00 0.00 0.00 4.30
2877 2917 5.237236 ACGAGTAATTTGGAAAGAAGGGA 57.763 39.130 0.00 0.00 0.00 4.20
2878 2918 4.092968 CGACGAGTAATTTGGAAAGAAGGG 59.907 45.833 0.00 0.00 0.00 3.95
2879 2919 4.689345 ACGACGAGTAATTTGGAAAGAAGG 59.311 41.667 0.00 0.00 0.00 3.46
2880 2920 5.389516 CCACGACGAGTAATTTGGAAAGAAG 60.390 44.000 0.00 0.00 0.00 2.85
2881 2921 4.449743 CCACGACGAGTAATTTGGAAAGAA 59.550 41.667 0.00 0.00 0.00 2.52
2882 2922 3.991773 CCACGACGAGTAATTTGGAAAGA 59.008 43.478 0.00 0.00 0.00 2.52
2883 2923 3.744426 ACCACGACGAGTAATTTGGAAAG 59.256 43.478 0.00 0.00 0.00 2.62
2884 2924 3.731089 ACCACGACGAGTAATTTGGAAA 58.269 40.909 0.00 0.00 0.00 3.13
2885 2925 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2886 2926 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2887 2927 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2888 2928 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2889 2929 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2890 2930 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2891 2931 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2892 2932 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2893 2933 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2894 2934 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2895 2935 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2896 2936 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2897 2937 7.895582 TTAAATTTGAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
2898 2938 9.292846 AGTTTAAATTTGAACTAAAACCACGAC 57.707 29.630 22.70 0.00 35.55 4.34
2909 2949 9.292846 GTCGTGGTTTTAGTTTAAATTTGAACT 57.707 29.630 25.84 25.84 39.80 3.01
2910 2950 8.254470 CGTCGTGGTTTTAGTTTAAATTTGAAC 58.746 33.333 15.93 15.93 0.00 3.18
2911 2951 7.431668 CCGTCGTGGTTTTAGTTTAAATTTGAA 59.568 33.333 0.00 0.00 0.00 2.69
2912 2952 6.911511 CCGTCGTGGTTTTAGTTTAAATTTGA 59.088 34.615 0.00 0.00 0.00 2.69
2913 2953 6.142639 CCCGTCGTGGTTTTAGTTTAAATTTG 59.857 38.462 0.00 0.00 35.15 2.32
2914 2954 6.183360 ACCCGTCGTGGTTTTAGTTTAAATTT 60.183 34.615 0.00 0.00 33.91 1.82
2915 2955 5.299028 ACCCGTCGTGGTTTTAGTTTAAATT 59.701 36.000 0.00 0.00 33.91 1.82
2916 2956 4.821260 ACCCGTCGTGGTTTTAGTTTAAAT 59.179 37.500 0.00 0.00 33.91 1.40
2917 2957 4.195416 ACCCGTCGTGGTTTTAGTTTAAA 58.805 39.130 0.11 0.00 33.91 1.52
2918 2958 3.802866 ACCCGTCGTGGTTTTAGTTTAA 58.197 40.909 0.11 0.00 33.91 1.52
2919 2959 3.467374 ACCCGTCGTGGTTTTAGTTTA 57.533 42.857 0.11 0.00 33.91 2.01
2920 2960 2.330440 ACCCGTCGTGGTTTTAGTTT 57.670 45.000 0.11 0.00 33.91 2.66
2921 2961 3.467374 TTACCCGTCGTGGTTTTAGTT 57.533 42.857 10.14 0.00 39.91 2.24
2922 2962 3.683365 ATTACCCGTCGTGGTTTTAGT 57.317 42.857 10.14 0.00 39.91 2.24
2923 2963 4.378666 CCAAATTACCCGTCGTGGTTTTAG 60.379 45.833 10.14 0.00 39.91 1.85
2924 2964 3.501445 CCAAATTACCCGTCGTGGTTTTA 59.499 43.478 10.14 0.00 39.91 1.52
2925 2965 2.293955 CCAAATTACCCGTCGTGGTTTT 59.706 45.455 10.14 4.39 39.91 2.43
2926 2966 1.881324 CCAAATTACCCGTCGTGGTTT 59.119 47.619 10.14 0.00 39.91 3.27
2927 2967 1.072015 TCCAAATTACCCGTCGTGGTT 59.928 47.619 10.14 0.00 39.91 3.67
2928 2968 0.686224 TCCAAATTACCCGTCGTGGT 59.314 50.000 9.82 9.82 42.62 4.16
2929 2969 1.465777 GTTCCAAATTACCCGTCGTGG 59.534 52.381 0.00 0.00 37.55 4.94
2930 2970 1.127213 CGTTCCAAATTACCCGTCGTG 59.873 52.381 0.00 0.00 0.00 4.35
2931 2971 1.431496 CGTTCCAAATTACCCGTCGT 58.569 50.000 0.00 0.00 0.00 4.34
2932 2972 0.722848 CCGTTCCAAATTACCCGTCG 59.277 55.000 0.00 0.00 0.00 5.12
2933 2973 2.004733 CTCCGTTCCAAATTACCCGTC 58.995 52.381 0.00 0.00 0.00 4.79
2934 2974 1.339342 CCTCCGTTCCAAATTACCCGT 60.339 52.381 0.00 0.00 0.00 5.28
2935 2975 1.375551 CCTCCGTTCCAAATTACCCG 58.624 55.000 0.00 0.00 0.00 5.28
2936 2976 1.282738 TCCCTCCGTTCCAAATTACCC 59.717 52.381 0.00 0.00 0.00 3.69
2937 2977 2.026542 ACTCCCTCCGTTCCAAATTACC 60.027 50.000 0.00 0.00 0.00 2.85
2938 2978 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2939 2979 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
2940 2980 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
2941 2981 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
2942 2982 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2943 2983 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
2944 2984 3.897657 ATATCTACTCCCTCCGTTCCA 57.102 47.619 0.00 0.00 0.00 3.53
2945 2985 6.661304 TTTAATATCTACTCCCTCCGTTCC 57.339 41.667 0.00 0.00 0.00 3.62
2946 2986 7.097834 CCATTTAATATCTACTCCCTCCGTTC 58.902 42.308 0.00 0.00 0.00 3.95
2947 2987 6.520231 GCCATTTAATATCTACTCCCTCCGTT 60.520 42.308 0.00 0.00 0.00 4.44
2948 2988 5.046520 GCCATTTAATATCTACTCCCTCCGT 60.047 44.000 0.00 0.00 0.00 4.69
2949 2989 5.420409 GCCATTTAATATCTACTCCCTCCG 58.580 45.833 0.00 0.00 0.00 4.63
2950 2990 5.489278 AGGCCATTTAATATCTACTCCCTCC 59.511 44.000 5.01 0.00 0.00 4.30
2951 2991 6.410540 CAGGCCATTTAATATCTACTCCCTC 58.589 44.000 5.01 0.00 0.00 4.30
2952 2992 5.280727 GCAGGCCATTTAATATCTACTCCCT 60.281 44.000 5.01 0.00 0.00 4.20
2953 2993 4.944317 GCAGGCCATTTAATATCTACTCCC 59.056 45.833 5.01 0.00 0.00 4.30
2954 2994 5.645497 CAGCAGGCCATTTAATATCTACTCC 59.355 44.000 5.01 0.00 0.00 3.85
2955 2995 6.467677 TCAGCAGGCCATTTAATATCTACTC 58.532 40.000 5.01 0.00 0.00 2.59
2956 2996 6.043706 ACTCAGCAGGCCATTTAATATCTACT 59.956 38.462 5.01 0.00 0.00 2.57
2957 2997 6.234177 ACTCAGCAGGCCATTTAATATCTAC 58.766 40.000 5.01 0.00 0.00 2.59
3047 3087 7.192852 TGCCAATGGTAATATTCCAACAAAT 57.807 32.000 0.00 0.00 38.52 2.32
3146 3186 3.701241 TGCAGCAAAGAAACCTAAAACG 58.299 40.909 0.00 0.00 0.00 3.60
3241 3281 7.327761 CCAAATTGAAGCTGTGTTTATGAAGAG 59.672 37.037 0.00 0.00 0.00 2.85
3256 3296 8.196802 ACAAAAGTAAGAAACCAAATTGAAGC 57.803 30.769 0.00 0.00 0.00 3.86
3845 3892 4.566907 GCAGTAAAGTTTATCCAGGGACCA 60.567 45.833 0.00 0.00 0.00 4.02
4091 4140 6.208007 GCATTCATGTCCCAGAAATATGATGA 59.792 38.462 0.00 0.00 0.00 2.92
4093 4142 6.072649 TGCATTCATGTCCCAGAAATATGAT 58.927 36.000 0.00 0.00 0.00 2.45
4279 4328 6.681777 AGTTGATTACAAAAACCAGATGAGC 58.318 36.000 0.00 0.00 37.77 4.26
4324 4373 1.276989 TGAGTGACATGATGCTGAGCA 59.723 47.619 10.59 10.59 44.86 4.26
4399 4448 7.888546 ACCAGACTTTAGTTAACCATGCTTATT 59.111 33.333 0.88 0.00 0.00 1.40
4436 4485 5.643348 TGTGAGCTACATGTAACATTGGAAG 59.357 40.000 7.06 0.00 33.42 3.46
4983 5033 5.287992 GCTTAACATGAGCAATTTGAGAAGC 59.712 40.000 0.00 0.00 39.89 3.86
5031 5081 4.405358 TGAAAGCTGAAACAAGGGTGAATT 59.595 37.500 0.00 0.00 0.00 2.17
5452 5553 0.391661 CTCCCATTCACTCACACGGG 60.392 60.000 0.00 0.00 34.81 5.28
5569 5670 8.084590 ACAAGCACAGTTAATTTAGACAGTAC 57.915 34.615 0.00 0.00 0.00 2.73
5601 5715 1.610522 CCTGCTATAAATGTGCCTGCC 59.389 52.381 0.00 0.00 0.00 4.85
5908 6034 5.488341 GGTATAGTTCTTGCAGACCTGAAA 58.512 41.667 0.47 0.00 0.00 2.69
6155 6281 9.725019 AATAATCAGGCAGATTTATGTCGAATA 57.275 29.630 10.52 0.00 44.48 1.75
6239 6365 2.768527 CTGCACCCTCAAGAATCCTCTA 59.231 50.000 0.00 0.00 0.00 2.43
6331 6457 1.418637 GGGTGGCGATGGTATAAGGAA 59.581 52.381 0.00 0.00 0.00 3.36
6398 6528 9.533253 GTTTACAGGTAACACAAACTACTAAGA 57.467 33.333 0.00 0.00 41.41 2.10
6399 6529 9.316730 TGTTTACAGGTAACACAAACTACTAAG 57.683 33.333 0.00 0.00 35.81 2.18
6400 6530 9.097257 GTGTTTACAGGTAACACAAACTACTAA 57.903 33.333 12.50 0.00 35.81 2.24
6401 6531 8.477256 AGTGTTTACAGGTAACACAAACTACTA 58.523 33.333 17.85 0.00 35.81 1.82
6419 6549 8.190122 TGCCATCATCATGATTTTAGTGTTTAC 58.810 33.333 5.16 0.00 34.28 2.01
6542 6672 3.869272 GCAGCCTCCATTGCGTCG 61.869 66.667 0.00 0.00 0.00 5.12
6618 6748 2.039879 GGTATCCGTAATGAATGCCCCT 59.960 50.000 0.00 0.00 0.00 4.79
6648 6778 3.246387 ACAACCCTCCCCTATAGTCAACT 60.246 47.826 0.00 0.00 0.00 3.16
6655 6785 1.111116 CGCGACAACCCTCCCCTATA 61.111 60.000 0.00 0.00 0.00 1.31
6662 6792 2.027625 CTTCCACGCGACAACCCTC 61.028 63.158 15.93 0.00 0.00 4.30
6795 6930 0.679640 CAAAACCTATGGGCGGCTGA 60.680 55.000 9.56 0.00 35.63 4.26
6796 6931 0.679640 TCAAAACCTATGGGCGGCTG 60.680 55.000 9.56 0.00 35.63 4.85
6837 6972 5.181056 TGCAAACAATCAATGACAGATACGT 59.819 36.000 0.00 0.00 0.00 3.57
6838 6973 5.630061 TGCAAACAATCAATGACAGATACG 58.370 37.500 0.00 0.00 0.00 3.06
6876 7192 1.408702 GGACTGTCCTTGCAGCAAAAA 59.591 47.619 19.53 0.00 39.96 1.94
6973 7291 1.895798 TGAAGTCTCGAGAAGCCATGT 59.104 47.619 18.55 0.00 0.00 3.21
6974 7292 2.266554 GTGAAGTCTCGAGAAGCCATG 58.733 52.381 18.55 0.00 0.00 3.66
6985 7312 4.060038 TGGACAAAGAGTGTGAAGTCTC 57.940 45.455 0.00 0.00 41.96 3.36
6988 7315 4.589908 AGTTTGGACAAAGAGTGTGAAGT 58.410 39.130 0.00 0.00 41.96 3.01
7052 7383 5.705441 CCTAAGCACTACAAAGAAATCCACA 59.295 40.000 0.00 0.00 0.00 4.17
7058 7389 5.889289 ACAAACCCTAAGCACTACAAAGAAA 59.111 36.000 0.00 0.00 0.00 2.52
7066 7397 3.482436 CACCAACAAACCCTAAGCACTA 58.518 45.455 0.00 0.00 0.00 2.74
7068 7399 1.339929 CCACCAACAAACCCTAAGCAC 59.660 52.381 0.00 0.00 0.00 4.40
7083 7414 3.569210 CCTGCCAGTGGACCACCA 61.569 66.667 21.32 11.11 44.76 4.17
7105 7436 0.248296 GAAACCGACAGCGTTGCAAA 60.248 50.000 0.00 0.00 35.23 3.68
7106 7437 1.353804 GAAACCGACAGCGTTGCAA 59.646 52.632 0.00 0.00 35.23 4.08
7107 7438 1.369839 TTGAAACCGACAGCGTTGCA 61.370 50.000 0.00 0.00 35.23 4.08
7110 7441 1.782028 GCCTTGAAACCGACAGCGTT 61.782 55.000 0.00 0.00 35.23 4.84
7117 7448 1.988293 TTTCCATGCCTTGAAACCGA 58.012 45.000 0.00 0.00 0.00 4.69
7126 7457 0.960364 ACGCGACATTTTCCATGCCT 60.960 50.000 15.93 0.00 0.00 4.75
7201 7533 2.183300 CCGCCGTCCGATGAGAAA 59.817 61.111 0.00 0.00 40.02 2.52
7217 7549 4.284550 TGGTTGCCAGCCCTGTCC 62.285 66.667 0.00 0.00 0.00 4.02
7372 7919 4.057428 GGACCAGTCGCAGTCGCT 62.057 66.667 0.00 0.00 35.30 4.93
7529 8077 0.597637 CTAACGGCGGAATCTGCGAT 60.598 55.000 13.24 1.46 30.86 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.