Multiple sequence alignment - TraesCS5A01G248500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G248500 chr5A 100.000 2586 0 0 1 2586 462806868 462809453 0.000000e+00 4776.0
1 TraesCS5A01G248500 chr5A 94.715 738 35 3 1849 2586 411880792 411880059 0.000000e+00 1144.0
2 TraesCS5A01G248500 chr7A 95.109 736 32 3 1853 2586 20023005 20023738 0.000000e+00 1157.0
3 TraesCS5A01G248500 chr7A 94.602 741 32 5 1846 2586 217948047 217947315 0.000000e+00 1140.0
4 TraesCS5A01G248500 chr7A 94.324 740 37 2 1847 2586 55368757 55368023 0.000000e+00 1129.0
5 TraesCS5A01G248500 chr3A 94.602 741 38 2 1847 2586 538023549 538022810 0.000000e+00 1146.0
6 TraesCS5A01G248500 chr2A 94.715 738 37 2 1849 2586 59003305 59004040 0.000000e+00 1146.0
7 TraesCS5A01G248500 chr2A 94.715 738 37 2 1849 2586 69264083 69263348 0.000000e+00 1146.0
8 TraesCS5A01G248500 chr2A 94.385 748 38 3 1839 2586 160011845 160012588 0.000000e+00 1146.0
9 TraesCS5A01G248500 chr4A 94.437 737 37 3 1850 2586 640204712 640203980 0.000000e+00 1131.0
10 TraesCS5A01G248500 chr5B 92.431 436 19 2 1242 1663 427823236 427823671 6.120000e-171 610.0
11 TraesCS5A01G248500 chr5B 89.796 392 26 7 800 1188 427822752 427823132 8.320000e-135 490.0
12 TraesCS5A01G248500 chr5B 79.580 333 60 6 1256 1584 427840174 427840502 5.570000e-57 231.0
13 TraesCS5A01G248500 chr5B 100.000 28 0 0 1825 1852 427823844 427823871 5.000000e-03 52.8
14 TraesCS5A01G248500 chr5D 93.062 418 11 3 1244 1661 361965232 361965631 1.710000e-166 595.0
15 TraesCS5A01G248500 chr5D 92.211 398 26 4 791 1188 361964741 361965133 2.250000e-155 558.0
16 TraesCS5A01G248500 chr5D 94.915 295 15 0 1 295 361964092 361964386 1.810000e-126 462.0
17 TraesCS5A01G248500 chr5D 83.387 313 42 6 1257 1564 362038135 362038442 5.450000e-72 281.0
18 TraesCS5A01G248500 chr5D 77.778 333 66 6 1256 1584 362007812 362008140 5.640000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G248500 chr5A 462806868 462809453 2585 False 4776.000000 4776 100.000000 1 2586 1 chr5A.!!$F1 2585
1 TraesCS5A01G248500 chr5A 411880059 411880792 733 True 1144.000000 1144 94.715000 1849 2586 1 chr5A.!!$R1 737
2 TraesCS5A01G248500 chr7A 20023005 20023738 733 False 1157.000000 1157 95.109000 1853 2586 1 chr7A.!!$F1 733
3 TraesCS5A01G248500 chr7A 217947315 217948047 732 True 1140.000000 1140 94.602000 1846 2586 1 chr7A.!!$R2 740
4 TraesCS5A01G248500 chr7A 55368023 55368757 734 True 1129.000000 1129 94.324000 1847 2586 1 chr7A.!!$R1 739
5 TraesCS5A01G248500 chr3A 538022810 538023549 739 True 1146.000000 1146 94.602000 1847 2586 1 chr3A.!!$R1 739
6 TraesCS5A01G248500 chr2A 59003305 59004040 735 False 1146.000000 1146 94.715000 1849 2586 1 chr2A.!!$F1 737
7 TraesCS5A01G248500 chr2A 69263348 69264083 735 True 1146.000000 1146 94.715000 1849 2586 1 chr2A.!!$R1 737
8 TraesCS5A01G248500 chr2A 160011845 160012588 743 False 1146.000000 1146 94.385000 1839 2586 1 chr2A.!!$F2 747
9 TraesCS5A01G248500 chr4A 640203980 640204712 732 True 1131.000000 1131 94.437000 1850 2586 1 chr4A.!!$R1 736
10 TraesCS5A01G248500 chr5B 427822752 427823871 1119 False 384.266667 610 94.075667 800 1852 3 chr5B.!!$F2 1052
11 TraesCS5A01G248500 chr5D 361964092 361965631 1539 False 538.333333 595 93.396000 1 1661 3 chr5D.!!$F3 1660


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 1018 0.030603 AGAGAGAAGGGATGGGGGAC 60.031 60.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2657 0.987294 CTCATTGAGGAGTGGTGGGT 59.013 55.0 5.73 0.0 0.0 4.51 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.162716 CCCTCCTTTTGCGTTCTCG 58.837 57.895 0.00 0.00 40.37 4.04
62 63 2.094597 TCGATCATTTGCCCAAAAGCTG 60.095 45.455 0.00 0.00 33.56 4.24
81 82 3.705604 CTGGCAGAAAATTCACACGTTT 58.294 40.909 9.42 0.00 0.00 3.60
83 84 3.129462 TGGCAGAAAATTCACACGTTTCA 59.871 39.130 0.00 0.00 34.40 2.69
92 93 3.637998 TCACACGTTTCAGTCCTAGAC 57.362 47.619 0.00 0.00 0.00 2.59
123 124 0.539051 ACTGCTATGTGAGTGAGGCC 59.461 55.000 0.00 0.00 0.00 5.19
157 158 1.279840 GCGGAAATGATACTGCGCC 59.720 57.895 4.18 0.00 45.33 6.53
247 248 1.060729 TCCATTCCCTTCACGGTTCA 58.939 50.000 0.00 0.00 0.00 3.18
251 252 0.531090 TTCCCTTCACGGTTCACACG 60.531 55.000 0.00 0.00 37.36 4.49
253 254 1.594293 CCTTCACGGTTCACACGCT 60.594 57.895 0.00 0.00 34.00 5.07
288 289 3.521524 AGCATTTTGTCGACGAGAAAC 57.478 42.857 18.57 8.70 0.00 2.78
295 296 4.443913 TTGTCGACGAGAAACCATATCA 57.556 40.909 11.62 0.00 0.00 2.15
296 297 4.028852 TGTCGACGAGAAACCATATCAG 57.971 45.455 11.62 0.00 0.00 2.90
297 298 2.789893 GTCGACGAGAAACCATATCAGC 59.210 50.000 0.00 0.00 0.00 4.26
298 299 1.781429 CGACGAGAAACCATATCAGCG 59.219 52.381 0.00 0.00 0.00 5.18
305 614 3.947834 AGAAACCATATCAGCGAAAAGGG 59.052 43.478 0.00 0.00 0.00 3.95
307 616 3.199880 ACCATATCAGCGAAAAGGGAG 57.800 47.619 0.00 0.00 0.00 4.30
314 623 0.603975 AGCGAAAAGGGAGCTGTCAC 60.604 55.000 0.00 0.00 40.07 3.67
315 624 1.578206 GCGAAAAGGGAGCTGTCACC 61.578 60.000 0.00 0.00 0.00 4.02
328 637 0.830444 TGTCACCGGCTACTGGTTCT 60.830 55.000 0.00 0.00 37.72 3.01
333 642 1.697982 ACCGGCTACTGGTTCTTTCTT 59.302 47.619 0.00 0.00 35.82 2.52
341 650 7.468220 CGGCTACTGGTTCTTTCTTTAAACTTT 60.468 37.037 0.00 0.00 0.00 2.66
342 651 8.843262 GGCTACTGGTTCTTTCTTTAAACTTTA 58.157 33.333 0.00 0.00 0.00 1.85
364 673 9.779237 CTTTATACTTAGATAATTGTTCGTGCG 57.221 33.333 0.00 0.00 0.00 5.34
365 674 8.861033 TTATACTTAGATAATTGTTCGTGCGT 57.139 30.769 0.00 0.00 0.00 5.24
366 675 7.766219 ATACTTAGATAATTGTTCGTGCGTT 57.234 32.000 0.00 0.00 0.00 4.84
367 676 6.091123 ACTTAGATAATTGTTCGTGCGTTC 57.909 37.500 0.00 0.00 0.00 3.95
368 677 5.063060 ACTTAGATAATTGTTCGTGCGTTCC 59.937 40.000 0.00 0.00 0.00 3.62
369 678 3.331150 AGATAATTGTTCGTGCGTTCCA 58.669 40.909 0.00 0.00 0.00 3.53
370 679 3.749088 AGATAATTGTTCGTGCGTTCCAA 59.251 39.130 0.00 0.00 0.00 3.53
371 680 2.113910 AATTGTTCGTGCGTTCCAAC 57.886 45.000 0.00 0.00 0.00 3.77
372 681 1.018148 ATTGTTCGTGCGTTCCAACA 58.982 45.000 0.00 0.00 0.00 3.33
373 682 1.018148 TTGTTCGTGCGTTCCAACAT 58.982 45.000 0.00 0.00 0.00 2.71
374 683 0.306228 TGTTCGTGCGTTCCAACATG 59.694 50.000 0.00 0.00 0.00 3.21
375 684 0.584396 GTTCGTGCGTTCCAACATGA 59.416 50.000 0.00 0.00 0.00 3.07
376 685 0.865111 TTCGTGCGTTCCAACATGAG 59.135 50.000 0.00 0.00 33.57 2.90
377 686 1.154413 CGTGCGTTCCAACATGAGC 60.154 57.895 0.00 0.00 0.00 4.26
378 687 1.840630 CGTGCGTTCCAACATGAGCA 61.841 55.000 0.00 0.00 0.00 4.26
379 688 0.523072 GTGCGTTCCAACATGAGCAT 59.477 50.000 0.00 0.00 36.96 3.79
380 689 1.737236 GTGCGTTCCAACATGAGCATA 59.263 47.619 0.00 0.00 36.96 3.14
381 690 2.009051 TGCGTTCCAACATGAGCATAG 58.991 47.619 0.00 0.00 0.00 2.23
382 691 2.279741 GCGTTCCAACATGAGCATAGA 58.720 47.619 0.00 0.00 0.00 1.98
383 692 2.030946 GCGTTCCAACATGAGCATAGAC 59.969 50.000 0.00 0.00 0.00 2.59
384 693 3.261580 CGTTCCAACATGAGCATAGACA 58.738 45.455 0.00 0.00 0.00 3.41
385 694 3.873361 CGTTCCAACATGAGCATAGACAT 59.127 43.478 0.00 0.00 0.00 3.06
386 695 4.333649 CGTTCCAACATGAGCATAGACATT 59.666 41.667 0.00 0.00 0.00 2.71
387 696 5.503031 CGTTCCAACATGAGCATAGACATTC 60.503 44.000 0.00 0.00 0.00 2.67
388 697 5.363562 TCCAACATGAGCATAGACATTCT 57.636 39.130 0.00 0.00 0.00 2.40
389 698 6.484364 TCCAACATGAGCATAGACATTCTA 57.516 37.500 0.00 0.00 32.87 2.10
390 699 6.519382 TCCAACATGAGCATAGACATTCTAG 58.481 40.000 0.00 0.00 31.67 2.43
391 700 6.098838 TCCAACATGAGCATAGACATTCTAGT 59.901 38.462 0.00 0.00 31.67 2.57
392 701 7.287696 TCCAACATGAGCATAGACATTCTAGTA 59.712 37.037 0.00 0.00 31.67 1.82
393 702 7.598118 CCAACATGAGCATAGACATTCTAGTAG 59.402 40.741 0.00 0.00 31.67 2.57
394 703 8.355913 CAACATGAGCATAGACATTCTAGTAGA 58.644 37.037 0.00 0.00 31.67 2.59
395 704 8.648698 ACATGAGCATAGACATTCTAGTAGAT 57.351 34.615 0.00 0.00 31.67 1.98
396 705 9.087871 ACATGAGCATAGACATTCTAGTAGATT 57.912 33.333 0.00 0.00 31.67 2.40
401 710 9.238368 AGCATAGACATTCTAGTAGATTAGACC 57.762 37.037 0.00 0.00 31.67 3.85
402 711 8.178964 GCATAGACATTCTAGTAGATTAGACCG 58.821 40.741 0.00 0.00 31.67 4.79
403 712 9.221933 CATAGACATTCTAGTAGATTAGACCGT 57.778 37.037 0.00 0.00 31.67 4.83
404 713 7.499321 AGACATTCTAGTAGATTAGACCGTG 57.501 40.000 0.00 0.00 29.67 4.94
405 714 7.281098 AGACATTCTAGTAGATTAGACCGTGA 58.719 38.462 0.00 0.00 29.67 4.35
406 715 7.940137 AGACATTCTAGTAGATTAGACCGTGAT 59.060 37.037 0.00 0.00 29.67 3.06
407 716 8.466617 ACATTCTAGTAGATTAGACCGTGATT 57.533 34.615 0.00 0.00 29.67 2.57
408 717 8.353684 ACATTCTAGTAGATTAGACCGTGATTG 58.646 37.037 0.00 0.00 29.67 2.67
409 718 6.315091 TCTAGTAGATTAGACCGTGATTGC 57.685 41.667 0.00 0.00 0.00 3.56
410 719 5.826208 TCTAGTAGATTAGACCGTGATTGCA 59.174 40.000 0.00 0.00 0.00 4.08
411 720 4.683832 AGTAGATTAGACCGTGATTGCAC 58.316 43.478 0.00 0.00 41.67 4.57
426 735 3.020102 GCACGCCTGCACTTTAATG 57.980 52.632 2.56 0.00 43.62 1.90
427 736 1.072666 GCACGCCTGCACTTTAATGC 61.073 55.000 2.56 0.00 43.62 3.56
442 751 8.707839 GCACTTTAATGCACTAAAATTTTAGCA 58.292 29.630 29.54 24.91 45.39 3.49
459 768 9.592720 AATTTTAGCAAAATTTTGTACGCAATC 57.407 25.926 27.13 11.52 46.01 2.67
460 769 7.700322 TTTAGCAAAATTTTGTACGCAATCA 57.300 28.000 27.13 4.70 40.24 2.57
461 770 5.574815 AGCAAAATTTTGTACGCAATCAC 57.425 34.783 27.13 10.29 40.24 3.06
462 771 4.447389 AGCAAAATTTTGTACGCAATCACC 59.553 37.500 27.13 9.85 40.24 4.02
463 772 4.210120 GCAAAATTTTGTACGCAATCACCA 59.790 37.500 27.13 0.00 40.24 4.17
464 773 5.107143 GCAAAATTTTGTACGCAATCACCAT 60.107 36.000 27.13 0.00 40.24 3.55
465 774 6.298103 CAAAATTTTGTACGCAATCACCATG 58.702 36.000 20.57 0.00 34.18 3.66
466 775 5.384063 AATTTTGTACGCAATCACCATGA 57.616 34.783 0.00 0.00 34.18 3.07
467 776 5.581126 ATTTTGTACGCAATCACCATGAT 57.419 34.783 0.00 0.00 39.09 2.45
469 778 5.384063 TTTGTACGCAATCACCATGATTT 57.616 34.783 1.25 0.00 44.03 2.17
470 779 6.502136 TTTGTACGCAATCACCATGATTTA 57.498 33.333 1.25 0.00 44.03 1.40
471 780 6.691754 TTGTACGCAATCACCATGATTTAT 57.308 33.333 1.25 0.00 44.03 1.40
472 781 6.299023 TGTACGCAATCACCATGATTTATC 57.701 37.500 1.25 0.00 44.03 1.75
473 782 6.054941 TGTACGCAATCACCATGATTTATCT 58.945 36.000 1.25 0.00 44.03 1.98
474 783 5.428496 ACGCAATCACCATGATTTATCTG 57.572 39.130 1.25 0.00 44.03 2.90
475 784 4.883585 ACGCAATCACCATGATTTATCTGT 59.116 37.500 1.25 0.00 44.03 3.41
476 785 5.008019 ACGCAATCACCATGATTTATCTGTC 59.992 40.000 1.25 0.00 44.03 3.51
477 786 5.007921 CGCAATCACCATGATTTATCTGTCA 59.992 40.000 1.25 0.00 44.03 3.58
478 787 6.293790 CGCAATCACCATGATTTATCTGTCAT 60.294 38.462 1.25 0.00 44.03 3.06
479 788 7.082602 GCAATCACCATGATTTATCTGTCATC 58.917 38.462 1.25 0.00 44.03 2.92
480 789 7.040617 GCAATCACCATGATTTATCTGTCATCT 60.041 37.037 1.25 0.00 44.03 2.90
481 790 8.847196 CAATCACCATGATTTATCTGTCATCTT 58.153 33.333 1.25 0.00 44.03 2.40
486 795 9.857656 ACCATGATTTATCTGTCATCTTATTGT 57.142 29.630 0.00 0.00 32.98 2.71
526 835 9.617523 TGAGCAAGTTCTTATATTCAATCATCA 57.382 29.630 0.00 0.00 0.00 3.07
556 865 9.725019 TTTACATGTCATCTTCTTGATAACACT 57.275 29.630 0.00 0.00 36.24 3.55
557 866 9.725019 TTACATGTCATCTTCTTGATAACACTT 57.275 29.630 0.00 0.00 36.24 3.16
558 867 8.037382 ACATGTCATCTTCTTGATAACACTTG 57.963 34.615 0.00 0.00 36.24 3.16
559 868 7.663081 ACATGTCATCTTCTTGATAACACTTGT 59.337 33.333 0.00 0.00 36.24 3.16
560 869 9.154847 CATGTCATCTTCTTGATAACACTTGTA 57.845 33.333 0.00 0.00 36.24 2.41
561 870 9.896645 ATGTCATCTTCTTGATAACACTTGTAT 57.103 29.630 0.00 0.00 36.24 2.29
562 871 9.725019 TGTCATCTTCTTGATAACACTTGTATT 57.275 29.630 0.00 0.00 28.76 1.89
577 886 9.908152 AACACTTGTATTTGATAAAAGCTTACC 57.092 29.630 0.00 0.00 34.12 2.85
578 887 9.073475 ACACTTGTATTTGATAAAAGCTTACCA 57.927 29.630 0.00 0.00 34.12 3.25
579 888 9.906660 CACTTGTATTTGATAAAAGCTTACCAA 57.093 29.630 0.00 0.00 34.12 3.67
626 935 9.886132 AGAAAGTTAATAAGACATGATACGGTT 57.114 29.630 0.00 0.00 0.00 4.44
634 943 9.832445 AATAAGACATGATACGGTTAAGTTGAT 57.168 29.630 0.00 0.00 0.00 2.57
635 944 9.832445 ATAAGACATGATACGGTTAAGTTGATT 57.168 29.630 0.00 0.00 0.00 2.57
636 945 8.561738 AAGACATGATACGGTTAAGTTGATTT 57.438 30.769 0.00 0.00 0.00 2.17
637 946 8.561738 AGACATGATACGGTTAAGTTGATTTT 57.438 30.769 0.00 0.00 0.00 1.82
638 947 9.661563 AGACATGATACGGTTAAGTTGATTTTA 57.338 29.630 0.00 0.00 0.00 1.52
639 948 9.916397 GACATGATACGGTTAAGTTGATTTTAG 57.084 33.333 0.00 0.00 0.00 1.85
640 949 9.661563 ACATGATACGGTTAAGTTGATTTTAGA 57.338 29.630 0.00 0.00 0.00 2.10
676 985 9.578439 GATAGAAGAAAATTCAAACATGGAAGG 57.422 33.333 0.00 0.00 0.00 3.46
677 986 6.226052 AGAAGAAAATTCAAACATGGAAGGC 58.774 36.000 0.00 0.00 0.00 4.35
678 987 5.549742 AGAAAATTCAAACATGGAAGGCA 57.450 34.783 0.00 0.00 0.00 4.75
679 988 5.544650 AGAAAATTCAAACATGGAAGGCAG 58.455 37.500 0.00 0.00 0.00 4.85
680 989 5.305128 AGAAAATTCAAACATGGAAGGCAGA 59.695 36.000 0.00 0.00 0.00 4.26
681 990 4.796038 AATTCAAACATGGAAGGCAGAG 57.204 40.909 0.00 0.00 0.00 3.35
682 991 3.507162 TTCAAACATGGAAGGCAGAGA 57.493 42.857 0.00 0.00 0.00 3.10
683 992 3.063510 TCAAACATGGAAGGCAGAGAG 57.936 47.619 0.00 0.00 0.00 3.20
684 993 2.639347 TCAAACATGGAAGGCAGAGAGA 59.361 45.455 0.00 0.00 0.00 3.10
685 994 3.008330 CAAACATGGAAGGCAGAGAGAG 58.992 50.000 0.00 0.00 0.00 3.20
686 995 2.244486 ACATGGAAGGCAGAGAGAGA 57.756 50.000 0.00 0.00 0.00 3.10
687 996 2.109774 ACATGGAAGGCAGAGAGAGAG 58.890 52.381 0.00 0.00 0.00 3.20
688 997 2.292126 ACATGGAAGGCAGAGAGAGAGA 60.292 50.000 0.00 0.00 0.00 3.10
689 998 2.612285 TGGAAGGCAGAGAGAGAGAA 57.388 50.000 0.00 0.00 0.00 2.87
690 999 2.894731 TGGAAGGCAGAGAGAGAGAAA 58.105 47.619 0.00 0.00 0.00 2.52
691 1000 2.830923 TGGAAGGCAGAGAGAGAGAAAG 59.169 50.000 0.00 0.00 0.00 2.62
692 1001 3.096092 GGAAGGCAGAGAGAGAGAAAGA 58.904 50.000 0.00 0.00 0.00 2.52
693 1002 3.131046 GGAAGGCAGAGAGAGAGAAAGAG 59.869 52.174 0.00 0.00 0.00 2.85
694 1003 3.737559 AGGCAGAGAGAGAGAAAGAGA 57.262 47.619 0.00 0.00 0.00 3.10
695 1004 3.624777 AGGCAGAGAGAGAGAAAGAGAG 58.375 50.000 0.00 0.00 0.00 3.20
696 1005 3.266772 AGGCAGAGAGAGAGAAAGAGAGA 59.733 47.826 0.00 0.00 0.00 3.10
697 1006 4.016444 GGCAGAGAGAGAGAAAGAGAGAA 58.984 47.826 0.00 0.00 0.00 2.87
698 1007 4.096984 GGCAGAGAGAGAGAAAGAGAGAAG 59.903 50.000 0.00 0.00 0.00 2.85
699 1008 4.096984 GCAGAGAGAGAGAAAGAGAGAAGG 59.903 50.000 0.00 0.00 0.00 3.46
700 1009 4.641989 CAGAGAGAGAGAAAGAGAGAAGGG 59.358 50.000 0.00 0.00 0.00 3.95
701 1010 4.540099 AGAGAGAGAGAAAGAGAGAAGGGA 59.460 45.833 0.00 0.00 0.00 4.20
702 1011 5.194537 AGAGAGAGAGAAAGAGAGAAGGGAT 59.805 44.000 0.00 0.00 0.00 3.85
703 1012 5.203528 AGAGAGAGAAAGAGAGAAGGGATG 58.796 45.833 0.00 0.00 0.00 3.51
704 1013 4.289245 AGAGAGAAAGAGAGAAGGGATGG 58.711 47.826 0.00 0.00 0.00 3.51
705 1014 3.383223 AGAGAAAGAGAGAAGGGATGGG 58.617 50.000 0.00 0.00 0.00 4.00
706 1015 2.437651 GAGAAAGAGAGAAGGGATGGGG 59.562 54.545 0.00 0.00 0.00 4.96
707 1016 1.492599 GAAAGAGAGAAGGGATGGGGG 59.507 57.143 0.00 0.00 0.00 5.40
708 1017 0.725133 AAGAGAGAAGGGATGGGGGA 59.275 55.000 0.00 0.00 0.00 4.81
709 1018 0.030603 AGAGAGAAGGGATGGGGGAC 60.031 60.000 0.00 0.00 0.00 4.46
710 1019 1.383248 AGAGAAGGGATGGGGGACG 60.383 63.158 0.00 0.00 0.00 4.79
711 1020 1.689582 GAGAAGGGATGGGGGACGT 60.690 63.158 0.00 0.00 0.00 4.34
712 1021 1.972660 GAGAAGGGATGGGGGACGTG 61.973 65.000 0.00 0.00 0.00 4.49
713 1022 1.993391 GAAGGGATGGGGGACGTGA 60.993 63.158 0.00 0.00 0.00 4.35
714 1023 1.972660 GAAGGGATGGGGGACGTGAG 61.973 65.000 0.00 0.00 0.00 3.51
715 1024 2.365105 GGGATGGGGGACGTGAGA 60.365 66.667 0.00 0.00 0.00 3.27
716 1025 1.766461 GGGATGGGGGACGTGAGAT 60.766 63.158 0.00 0.00 0.00 2.75
717 1026 1.345715 GGGATGGGGGACGTGAGATT 61.346 60.000 0.00 0.00 0.00 2.40
718 1027 0.179045 GGATGGGGGACGTGAGATTG 60.179 60.000 0.00 0.00 0.00 2.67
719 1028 0.179045 GATGGGGGACGTGAGATTGG 60.179 60.000 0.00 0.00 0.00 3.16
720 1029 0.620410 ATGGGGGACGTGAGATTGGA 60.620 55.000 0.00 0.00 0.00 3.53
721 1030 1.221021 GGGGGACGTGAGATTGGAC 59.779 63.158 0.00 0.00 0.00 4.02
722 1031 1.153628 GGGGACGTGAGATTGGACG 60.154 63.158 0.00 0.00 41.41 4.79
723 1032 1.601419 GGGGACGTGAGATTGGACGA 61.601 60.000 0.00 0.00 38.94 4.20
724 1033 0.245539 GGGACGTGAGATTGGACGAA 59.754 55.000 0.00 0.00 38.94 3.85
725 1034 1.630148 GGACGTGAGATTGGACGAAG 58.370 55.000 0.00 0.00 38.94 3.79
726 1035 1.630148 GACGTGAGATTGGACGAAGG 58.370 55.000 0.00 0.00 38.94 3.46
727 1036 1.201647 GACGTGAGATTGGACGAAGGA 59.798 52.381 0.00 0.00 38.94 3.36
728 1037 1.616865 ACGTGAGATTGGACGAAGGAA 59.383 47.619 0.00 0.00 38.94 3.36
729 1038 2.036733 ACGTGAGATTGGACGAAGGAAA 59.963 45.455 0.00 0.00 38.94 3.13
730 1039 2.668457 CGTGAGATTGGACGAAGGAAAG 59.332 50.000 0.00 0.00 37.81 2.62
731 1040 3.003480 GTGAGATTGGACGAAGGAAAGG 58.997 50.000 0.00 0.00 0.00 3.11
732 1041 2.637872 TGAGATTGGACGAAGGAAAGGT 59.362 45.455 0.00 0.00 0.00 3.50
733 1042 3.003480 GAGATTGGACGAAGGAAAGGTG 58.997 50.000 0.00 0.00 0.00 4.00
734 1043 2.637872 AGATTGGACGAAGGAAAGGTGA 59.362 45.455 0.00 0.00 0.00 4.02
735 1044 3.072476 AGATTGGACGAAGGAAAGGTGAA 59.928 43.478 0.00 0.00 0.00 3.18
736 1045 3.284793 TTGGACGAAGGAAAGGTGAAA 57.715 42.857 0.00 0.00 0.00 2.69
737 1046 2.567985 TGGACGAAGGAAAGGTGAAAC 58.432 47.619 0.00 0.00 0.00 2.78
738 1047 1.529865 GGACGAAGGAAAGGTGAAACG 59.470 52.381 0.00 0.00 38.12 3.60
739 1048 1.529865 GACGAAGGAAAGGTGAAACGG 59.470 52.381 0.00 0.00 38.12 4.44
740 1049 1.139455 ACGAAGGAAAGGTGAAACGGA 59.861 47.619 0.00 0.00 38.12 4.69
741 1050 2.215196 CGAAGGAAAGGTGAAACGGAA 58.785 47.619 0.00 0.00 38.12 4.30
742 1051 2.614983 CGAAGGAAAGGTGAAACGGAAA 59.385 45.455 0.00 0.00 38.12 3.13
743 1052 3.303791 CGAAGGAAAGGTGAAACGGAAAG 60.304 47.826 0.00 0.00 38.12 2.62
744 1053 1.954382 AGGAAAGGTGAAACGGAAAGC 59.046 47.619 0.00 0.00 38.12 3.51
745 1054 1.954382 GGAAAGGTGAAACGGAAAGCT 59.046 47.619 0.00 0.00 38.12 3.74
746 1055 2.361119 GGAAAGGTGAAACGGAAAGCTT 59.639 45.455 0.00 0.00 38.12 3.74
747 1056 3.566742 GGAAAGGTGAAACGGAAAGCTTA 59.433 43.478 0.00 0.00 38.12 3.09
748 1057 4.217767 GGAAAGGTGAAACGGAAAGCTTAT 59.782 41.667 0.00 0.00 38.12 1.73
749 1058 4.766404 AAGGTGAAACGGAAAGCTTATG 57.234 40.909 0.00 0.00 38.12 1.90
750 1059 3.751518 AGGTGAAACGGAAAGCTTATGT 58.248 40.909 0.00 0.00 38.12 2.29
751 1060 4.142038 AGGTGAAACGGAAAGCTTATGTT 58.858 39.130 0.00 2.00 38.12 2.71
752 1061 4.583073 AGGTGAAACGGAAAGCTTATGTTT 59.417 37.500 18.13 18.13 38.12 2.83
753 1062 5.068591 AGGTGAAACGGAAAGCTTATGTTTT 59.931 36.000 18.75 9.39 38.12 2.43
754 1063 5.751509 GGTGAAACGGAAAGCTTATGTTTTT 59.248 36.000 18.75 8.27 38.12 1.94
789 1098 9.166222 AGAGAGATGGAGATTTAGTAGTAGAGA 57.834 37.037 0.00 0.00 0.00 3.10
806 1115 3.869065 AGAGATTTCGCACCGGAAATTA 58.131 40.909 9.46 0.00 44.41 1.40
809 1118 4.196193 AGATTTCGCACCGGAAATTATGA 58.804 39.130 9.46 0.00 44.41 2.15
810 1119 4.273480 AGATTTCGCACCGGAAATTATGAG 59.727 41.667 9.46 0.00 44.41 2.90
822 1131 2.471815 ATTATGAGAGGGGACGTGGA 57.528 50.000 0.00 0.00 0.00 4.02
863 1172 1.977544 CTCTCAACCTCCGGTCCGT 60.978 63.158 11.06 0.00 33.12 4.69
894 1203 1.438651 GCTACATCCACAGTGCGAAA 58.561 50.000 0.00 0.00 0.00 3.46
898 1207 0.606401 CATCCACAGTGCGAAAGGGT 60.606 55.000 0.00 0.00 0.00 4.34
901 1210 0.030638 CCACAGTGCGAAAGGGTTTG 59.969 55.000 0.00 0.00 0.00 2.93
907 1216 0.821711 TGCGAAAGGGTTTGGGTGAG 60.822 55.000 0.00 0.00 0.00 3.51
913 1222 1.525175 AGGGTTTGGGTGAGTGGTAA 58.475 50.000 0.00 0.00 0.00 2.85
914 1223 1.144298 AGGGTTTGGGTGAGTGGTAAC 59.856 52.381 0.00 0.00 0.00 2.50
960 1271 0.890683 CATCCTTTCCAGTGCCAACC 59.109 55.000 0.00 0.00 0.00 3.77
961 1272 0.779997 ATCCTTTCCAGTGCCAACCT 59.220 50.000 0.00 0.00 0.00 3.50
971 1282 1.009389 GTGCCAACCTCTCTCGTTCG 61.009 60.000 0.00 0.00 0.00 3.95
973 1284 1.289066 CCAACCTCTCTCGTTCGCA 59.711 57.895 0.00 0.00 0.00 5.10
986 1297 0.603569 GTTCGCACTCTCCTTCCTCA 59.396 55.000 0.00 0.00 0.00 3.86
987 1298 1.205893 GTTCGCACTCTCCTTCCTCAT 59.794 52.381 0.00 0.00 0.00 2.90
996 1307 3.139850 TCTCCTTCCTCATATCGTCGAC 58.860 50.000 5.18 5.18 0.00 4.20
1089 1400 3.353029 TCGTACACCGTCGGCGAA 61.353 61.111 12.93 0.00 41.33 4.70
1195 1506 4.415332 GCTCTTCGCCGTCGGTGA 62.415 66.667 23.33 23.33 40.77 4.02
1198 1509 2.355363 CTTCGCCGTCGGTGACAA 60.355 61.111 26.62 12.72 42.31 3.18
1199 1510 2.355363 TTCGCCGTCGGTGACAAG 60.355 61.111 26.62 5.02 42.31 3.16
1218 1554 1.136891 AGCACGAGTATACTGCATGCA 59.863 47.619 21.29 21.29 34.03 3.96
1219 1555 1.258982 GCACGAGTATACTGCATGCAC 59.741 52.381 18.46 6.72 0.00 4.57
1220 1556 1.518515 CACGAGTATACTGCATGCACG 59.481 52.381 18.46 18.93 38.80 5.34
1221 1557 1.134367 ACGAGTATACTGCATGCACGT 59.866 47.619 18.46 19.62 40.53 4.49
1222 1558 2.356695 ACGAGTATACTGCATGCACGTA 59.643 45.455 23.38 23.30 42.68 3.57
1223 1559 2.719556 CGAGTATACTGCATGCACGTAC 59.280 50.000 18.46 18.17 30.83 3.67
1252 1613 6.966066 GTGTTGAAATTGTGTTGGAATTTTGG 59.034 34.615 0.00 0.00 34.00 3.28
1330 1691 3.701604 CTACACGTCCTGCTCCGGC 62.702 68.421 0.00 0.00 39.26 6.13
1670 2104 4.043750 TCGTCTTAATTTCGTGTCGTGTT 58.956 39.130 0.00 0.00 0.00 3.32
1685 2119 0.865639 GTGTTTGCACGTTGGTCTGC 60.866 55.000 0.00 0.00 35.75 4.26
1704 2138 4.278513 TGCCTCCCGGGGTTTGTG 62.279 66.667 23.50 4.01 35.12 3.33
1713 2147 2.517402 GGGTTTGTGGTCGTGCCA 60.517 61.111 0.00 0.00 46.95 4.92
1735 2169 3.065786 AGAGCATTATGGATTGTGCGTTG 59.934 43.478 0.00 0.00 42.18 4.10
1738 2172 3.427368 GCATTATGGATTGTGCGTTGTGA 60.427 43.478 0.00 0.00 0.00 3.58
1739 2173 3.822594 TTATGGATTGTGCGTTGTGAC 57.177 42.857 0.00 0.00 0.00 3.67
1754 2188 4.898370 GTTGTGACGAATGCTTTCTATCC 58.102 43.478 10.29 4.00 0.00 2.59
1755 2189 3.531538 TGTGACGAATGCTTTCTATCCC 58.468 45.455 10.29 1.22 0.00 3.85
1759 2193 3.798202 ACGAATGCTTTCTATCCCTGAC 58.202 45.455 10.29 0.00 0.00 3.51
1760 2194 3.197766 ACGAATGCTTTCTATCCCTGACA 59.802 43.478 10.29 0.00 0.00 3.58
1761 2195 3.806521 CGAATGCTTTCTATCCCTGACAG 59.193 47.826 10.29 0.00 0.00 3.51
1762 2196 4.681781 CGAATGCTTTCTATCCCTGACAGT 60.682 45.833 10.29 0.00 0.00 3.55
1763 2197 4.851639 ATGCTTTCTATCCCTGACAGTT 57.148 40.909 0.93 0.00 0.00 3.16
1764 2198 4.207891 TGCTTTCTATCCCTGACAGTTC 57.792 45.455 0.93 0.00 0.00 3.01
1765 2199 3.840666 TGCTTTCTATCCCTGACAGTTCT 59.159 43.478 0.93 0.00 0.00 3.01
1768 2202 5.707764 GCTTTCTATCCCTGACAGTTCTTTT 59.292 40.000 0.93 0.00 0.00 2.27
1777 2213 6.872020 TCCCTGACAGTTCTTTTCGTAATAAG 59.128 38.462 0.93 0.00 0.00 1.73
1779 2215 7.386848 CCCTGACAGTTCTTTTCGTAATAAGAA 59.613 37.037 0.93 0.00 37.88 2.52
1793 2229 8.766000 TCGTAATAAGAATACTTTGTGCAAGA 57.234 30.769 0.00 0.00 37.53 3.02
1794 2230 9.210329 TCGTAATAAGAATACTTTGTGCAAGAA 57.790 29.630 0.00 0.00 37.53 2.52
1795 2231 9.820229 CGTAATAAGAATACTTTGTGCAAGAAA 57.180 29.630 0.00 0.00 37.53 2.52
1800 2236 8.634475 AAGAATACTTTGTGCAAGAAAAAGTC 57.366 30.769 16.71 7.26 41.84 3.01
1801 2237 8.000780 AGAATACTTTGTGCAAGAAAAAGTCT 57.999 30.769 16.71 8.58 41.84 3.24
1802 2238 8.131731 AGAATACTTTGTGCAAGAAAAAGTCTC 58.868 33.333 16.71 14.73 41.84 3.36
1803 2239 5.904362 ACTTTGTGCAAGAAAAAGTCTCT 57.096 34.783 10.60 0.00 39.34 3.10
1804 2240 6.272822 ACTTTGTGCAAGAAAAAGTCTCTT 57.727 33.333 10.60 0.00 39.34 2.85
1805 2241 6.691508 ACTTTGTGCAAGAAAAAGTCTCTTT 58.308 32.000 10.60 0.00 39.34 2.52
1806 2242 7.154656 ACTTTGTGCAAGAAAAAGTCTCTTTT 58.845 30.769 10.60 2.21 39.34 2.27
1807 2243 7.657354 ACTTTGTGCAAGAAAAAGTCTCTTTTT 59.343 29.630 16.59 16.59 39.34 1.94
1971 2407 2.648724 CTAAAATGCAGCGCGCGG 60.649 61.111 33.06 27.12 46.97 6.46
2052 2494 5.065731 TGCATTCGAAACCAAAAGCAAAAAT 59.934 32.000 0.00 0.00 0.00 1.82
2060 2503 9.495754 CGAAACCAAAAGCAAAAATATCAAAAA 57.504 25.926 0.00 0.00 0.00 1.94
2143 2586 8.365210 CGTTCAATACAACAAATAGTGCAATTC 58.635 33.333 0.00 0.00 0.00 2.17
2214 2657 3.055458 TGCTCTTTGTCGTCCATTCCATA 60.055 43.478 0.00 0.00 0.00 2.74
2256 2699 7.075851 AGATCCTTCTGAAGATCATTATGCA 57.924 36.000 18.68 0.00 0.00 3.96
2386 2829 0.036732 TCTTGGCCACGCTCATTCTT 59.963 50.000 3.88 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.615227 ATCAAGACCTGGGGCGCATC 62.615 60.000 10.83 0.25 0.00 3.91
62 63 3.701241 TGAAACGTGTGAATTTTCTGCC 58.299 40.909 0.00 0.00 31.68 4.85
81 82 9.508642 CAGTATATATCACTTGTCTAGGACTGA 57.491 37.037 0.00 0.00 33.15 3.41
83 84 8.167392 AGCAGTATATATCACTTGTCTAGGACT 58.833 37.037 0.00 0.00 33.15 3.85
92 93 9.351570 CACTCACATAGCAGTATATATCACTTG 57.648 37.037 0.00 0.00 0.00 3.16
136 137 1.279840 GCAGTATCATTTCCGCCGC 59.720 57.895 0.00 0.00 0.00 6.53
157 158 1.007964 CTAGCTGGTCGGCATCTCG 60.008 63.158 0.00 0.00 34.17 4.04
251 252 2.904866 TTTCGGTGTGGGTGCAGC 60.905 61.111 7.55 7.55 0.00 5.25
253 254 2.904866 GCTTTCGGTGTGGGTGCA 60.905 61.111 0.00 0.00 0.00 4.57
288 289 1.876156 GCTCCCTTTTCGCTGATATGG 59.124 52.381 0.00 0.00 0.00 2.74
295 296 0.603975 GTGACAGCTCCCTTTTCGCT 60.604 55.000 0.00 0.00 0.00 4.93
296 297 1.578206 GGTGACAGCTCCCTTTTCGC 61.578 60.000 0.00 0.00 0.00 4.70
297 298 1.291877 CGGTGACAGCTCCCTTTTCG 61.292 60.000 2.72 0.00 0.00 3.46
298 299 0.955919 CCGGTGACAGCTCCCTTTTC 60.956 60.000 2.72 0.00 0.00 2.29
305 614 1.153745 CAGTAGCCGGTGACAGCTC 60.154 63.158 1.90 0.00 40.56 4.09
307 616 2.125512 CCAGTAGCCGGTGACAGC 60.126 66.667 1.90 0.00 0.00 4.40
314 623 2.474410 AAGAAAGAACCAGTAGCCGG 57.526 50.000 0.00 0.00 0.00 6.13
315 624 5.469084 AGTTTAAAGAAAGAACCAGTAGCCG 59.531 40.000 0.00 0.00 0.00 5.52
341 650 8.861033 AACGCACGAACAATTATCTAAGTATA 57.139 30.769 0.00 0.00 0.00 1.47
342 651 7.042925 GGAACGCACGAACAATTATCTAAGTAT 60.043 37.037 0.00 0.00 0.00 2.12
343 652 6.254157 GGAACGCACGAACAATTATCTAAGTA 59.746 38.462 0.00 0.00 0.00 2.24
344 653 5.063060 GGAACGCACGAACAATTATCTAAGT 59.937 40.000 0.00 0.00 0.00 2.24
345 654 5.062934 TGGAACGCACGAACAATTATCTAAG 59.937 40.000 0.00 0.00 0.00 2.18
346 655 4.930405 TGGAACGCACGAACAATTATCTAA 59.070 37.500 0.00 0.00 0.00 2.10
347 656 4.496360 TGGAACGCACGAACAATTATCTA 58.504 39.130 0.00 0.00 0.00 1.98
348 657 3.331150 TGGAACGCACGAACAATTATCT 58.669 40.909 0.00 0.00 0.00 1.98
349 658 3.733024 TGGAACGCACGAACAATTATC 57.267 42.857 0.00 0.00 0.00 1.75
350 659 3.251245 TGTTGGAACGCACGAACAATTAT 59.749 39.130 0.00 0.00 36.06 1.28
351 660 2.612672 TGTTGGAACGCACGAACAATTA 59.387 40.909 0.00 0.00 36.06 1.40
352 661 1.402259 TGTTGGAACGCACGAACAATT 59.598 42.857 0.00 0.00 36.06 2.32
353 662 1.018148 TGTTGGAACGCACGAACAAT 58.982 45.000 0.00 0.00 36.06 2.71
354 663 1.018148 ATGTTGGAACGCACGAACAA 58.982 45.000 12.13 0.00 40.54 2.83
355 664 0.306228 CATGTTGGAACGCACGAACA 59.694 50.000 10.96 10.96 41.15 3.18
356 665 0.584396 TCATGTTGGAACGCACGAAC 59.416 50.000 0.00 0.00 0.00 3.95
357 666 0.865111 CTCATGTTGGAACGCACGAA 59.135 50.000 0.00 0.00 0.00 3.85
358 667 1.565156 GCTCATGTTGGAACGCACGA 61.565 55.000 0.00 0.00 0.00 4.35
359 668 1.154413 GCTCATGTTGGAACGCACG 60.154 57.895 0.00 0.00 0.00 5.34
360 669 0.523072 ATGCTCATGTTGGAACGCAC 59.477 50.000 0.00 0.00 0.00 5.34
361 670 2.009051 CTATGCTCATGTTGGAACGCA 58.991 47.619 0.00 0.00 0.00 5.24
362 671 2.030946 GTCTATGCTCATGTTGGAACGC 59.969 50.000 0.00 0.00 0.00 4.84
363 672 3.261580 TGTCTATGCTCATGTTGGAACG 58.738 45.455 0.00 0.00 0.00 3.95
364 673 5.587844 AGAATGTCTATGCTCATGTTGGAAC 59.412 40.000 0.00 0.00 0.00 3.62
365 674 5.748402 AGAATGTCTATGCTCATGTTGGAA 58.252 37.500 0.00 0.00 0.00 3.53
366 675 5.363562 AGAATGTCTATGCTCATGTTGGA 57.636 39.130 0.00 0.00 0.00 3.53
367 676 6.286758 ACTAGAATGTCTATGCTCATGTTGG 58.713 40.000 0.00 0.00 0.00 3.77
368 677 8.355913 TCTACTAGAATGTCTATGCTCATGTTG 58.644 37.037 0.00 0.00 0.00 3.33
369 678 8.470657 TCTACTAGAATGTCTATGCTCATGTT 57.529 34.615 0.00 0.00 0.00 2.71
370 679 8.648698 ATCTACTAGAATGTCTATGCTCATGT 57.351 34.615 0.00 0.00 0.00 3.21
375 684 9.238368 GGTCTAATCTACTAGAATGTCTATGCT 57.762 37.037 0.00 0.00 29.74 3.79
376 685 8.178964 CGGTCTAATCTACTAGAATGTCTATGC 58.821 40.741 0.00 0.00 29.74 3.14
377 686 9.221933 ACGGTCTAATCTACTAGAATGTCTATG 57.778 37.037 0.00 0.00 29.74 2.23
378 687 9.221933 CACGGTCTAATCTACTAGAATGTCTAT 57.778 37.037 0.00 0.00 29.74 1.98
379 688 8.427276 TCACGGTCTAATCTACTAGAATGTCTA 58.573 37.037 0.00 0.00 29.74 2.59
380 689 7.281098 TCACGGTCTAATCTACTAGAATGTCT 58.719 38.462 0.00 0.00 29.74 3.41
381 690 7.493743 TCACGGTCTAATCTACTAGAATGTC 57.506 40.000 0.00 0.00 29.74 3.06
382 691 8.353684 CAATCACGGTCTAATCTACTAGAATGT 58.646 37.037 0.00 0.00 29.74 2.71
383 692 7.327275 GCAATCACGGTCTAATCTACTAGAATG 59.673 40.741 0.00 0.00 29.74 2.67
384 693 7.014326 TGCAATCACGGTCTAATCTACTAGAAT 59.986 37.037 0.00 0.00 29.74 2.40
385 694 6.320418 TGCAATCACGGTCTAATCTACTAGAA 59.680 38.462 0.00 0.00 29.74 2.10
386 695 5.826208 TGCAATCACGGTCTAATCTACTAGA 59.174 40.000 0.00 0.00 0.00 2.43
387 696 5.915758 GTGCAATCACGGTCTAATCTACTAG 59.084 44.000 0.00 0.00 32.98 2.57
388 697 5.828747 GTGCAATCACGGTCTAATCTACTA 58.171 41.667 0.00 0.00 32.98 1.82
389 698 4.683832 GTGCAATCACGGTCTAATCTACT 58.316 43.478 0.00 0.00 32.98 2.57
409 718 3.020102 GCATTAAAGTGCAGGCGTG 57.980 52.632 1.01 1.01 44.43 5.34
415 724 8.707839 GCTAAAATTTTAGTGCATTAAAGTGCA 58.292 29.630 29.56 0.00 44.31 4.57
416 725 8.707839 TGCTAAAATTTTAGTGCATTAAAGTGC 58.292 29.630 29.56 16.89 41.63 4.40
434 743 8.768955 TGATTGCGTACAAAATTTTGCTAAAAT 58.231 25.926 26.94 19.64 41.79 1.82
435 744 8.058915 GTGATTGCGTACAAAATTTTGCTAAAA 58.941 29.630 26.94 16.53 41.79 1.52
436 745 7.306866 GGTGATTGCGTACAAAATTTTGCTAAA 60.307 33.333 26.94 15.94 41.79 1.85
437 746 6.144724 GGTGATTGCGTACAAAATTTTGCTAA 59.855 34.615 26.94 16.08 41.79 3.09
438 747 5.631512 GGTGATTGCGTACAAAATTTTGCTA 59.368 36.000 26.94 16.62 41.79 3.49
439 748 4.447389 GGTGATTGCGTACAAAATTTTGCT 59.553 37.500 26.94 17.48 41.79 3.91
440 749 4.210120 TGGTGATTGCGTACAAAATTTTGC 59.790 37.500 26.94 15.61 41.79 3.68
441 750 5.896922 TGGTGATTGCGTACAAAATTTTG 57.103 34.783 25.73 25.73 39.77 2.44
442 751 6.219473 TCATGGTGATTGCGTACAAAATTTT 58.781 32.000 0.00 0.00 39.77 1.82
443 752 5.777802 TCATGGTGATTGCGTACAAAATTT 58.222 33.333 0.00 0.00 39.77 1.82
444 753 5.384063 TCATGGTGATTGCGTACAAAATT 57.616 34.783 0.00 0.00 39.77 1.82
445 754 5.581126 ATCATGGTGATTGCGTACAAAAT 57.419 34.783 0.00 0.00 39.77 1.82
446 755 5.384063 AATCATGGTGATTGCGTACAAAA 57.616 34.783 4.50 0.00 44.68 2.44
447 756 5.384063 AAATCATGGTGATTGCGTACAAA 57.616 34.783 5.99 0.00 45.57 2.83
448 757 6.542005 AGATAAATCATGGTGATTGCGTACAA 59.458 34.615 5.99 0.00 45.57 2.41
449 758 6.018016 CAGATAAATCATGGTGATTGCGTACA 60.018 38.462 5.99 0.00 45.57 2.90
450 759 6.017934 ACAGATAAATCATGGTGATTGCGTAC 60.018 38.462 5.99 0.00 45.57 3.67
451 760 6.054941 ACAGATAAATCATGGTGATTGCGTA 58.945 36.000 5.99 0.00 45.57 4.42
452 761 4.883585 ACAGATAAATCATGGTGATTGCGT 59.116 37.500 5.99 0.00 45.57 5.24
453 762 5.007921 TGACAGATAAATCATGGTGATTGCG 59.992 40.000 5.99 0.00 45.57 4.85
454 763 6.381481 TGACAGATAAATCATGGTGATTGC 57.619 37.500 5.99 0.65 45.57 3.56
455 764 8.392372 AGATGACAGATAAATCATGGTGATTG 57.608 34.615 5.99 0.00 45.57 2.67
460 769 9.857656 ACAATAAGATGACAGATAAATCATGGT 57.142 29.630 0.00 0.00 35.67 3.55
500 809 9.617523 TGATGATTGAATATAAGAACTTGCTCA 57.382 29.630 0.00 0.00 0.00 4.26
551 860 9.908152 GGTAAGCTTTTATCAAATACAAGTGTT 57.092 29.630 3.20 0.00 0.00 3.32
552 861 9.073475 TGGTAAGCTTTTATCAAATACAAGTGT 57.927 29.630 3.20 0.00 0.00 3.55
553 862 9.906660 TTGGTAAGCTTTTATCAAATACAAGTG 57.093 29.630 3.20 0.00 0.00 3.16
600 909 9.886132 AACCGTATCATGTCTTATTAACTTTCT 57.114 29.630 0.00 0.00 0.00 2.52
608 917 9.832445 ATCAACTTAACCGTATCATGTCTTATT 57.168 29.630 0.00 0.00 0.00 1.40
609 918 9.832445 AATCAACTTAACCGTATCATGTCTTAT 57.168 29.630 0.00 0.00 0.00 1.73
610 919 9.661563 AAATCAACTTAACCGTATCATGTCTTA 57.338 29.630 0.00 0.00 0.00 2.10
611 920 8.561738 AAATCAACTTAACCGTATCATGTCTT 57.438 30.769 0.00 0.00 0.00 3.01
612 921 8.561738 AAAATCAACTTAACCGTATCATGTCT 57.438 30.769 0.00 0.00 0.00 3.41
613 922 9.916397 CTAAAATCAACTTAACCGTATCATGTC 57.084 33.333 0.00 0.00 0.00 3.06
614 923 9.661563 TCTAAAATCAACTTAACCGTATCATGT 57.338 29.630 0.00 0.00 0.00 3.21
650 959 9.578439 CCTTCCATGTTTGAATTTTCTTCTATC 57.422 33.333 0.00 0.00 0.00 2.08
651 960 8.037166 GCCTTCCATGTTTGAATTTTCTTCTAT 58.963 33.333 0.00 0.00 0.00 1.98
652 961 7.015098 TGCCTTCCATGTTTGAATTTTCTTCTA 59.985 33.333 0.00 0.00 0.00 2.10
653 962 6.183360 TGCCTTCCATGTTTGAATTTTCTTCT 60.183 34.615 0.00 0.00 0.00 2.85
654 963 5.990996 TGCCTTCCATGTTTGAATTTTCTTC 59.009 36.000 0.00 0.00 0.00 2.87
655 964 5.927819 TGCCTTCCATGTTTGAATTTTCTT 58.072 33.333 0.00 0.00 0.00 2.52
656 965 5.305128 TCTGCCTTCCATGTTTGAATTTTCT 59.695 36.000 0.00 0.00 0.00 2.52
657 966 5.540911 TCTGCCTTCCATGTTTGAATTTTC 58.459 37.500 0.00 0.00 0.00 2.29
658 967 5.305128 TCTCTGCCTTCCATGTTTGAATTTT 59.695 36.000 0.00 0.00 0.00 1.82
659 968 4.834496 TCTCTGCCTTCCATGTTTGAATTT 59.166 37.500 0.00 0.00 0.00 1.82
660 969 4.410099 TCTCTGCCTTCCATGTTTGAATT 58.590 39.130 0.00 0.00 0.00 2.17
661 970 4.015084 CTCTCTGCCTTCCATGTTTGAAT 58.985 43.478 0.00 0.00 0.00 2.57
662 971 3.072915 TCTCTCTGCCTTCCATGTTTGAA 59.927 43.478 0.00 0.00 0.00 2.69
663 972 2.639347 TCTCTCTGCCTTCCATGTTTGA 59.361 45.455 0.00 0.00 0.00 2.69
664 973 3.008330 CTCTCTCTGCCTTCCATGTTTG 58.992 50.000 0.00 0.00 0.00 2.93
665 974 2.909006 TCTCTCTCTGCCTTCCATGTTT 59.091 45.455 0.00 0.00 0.00 2.83
666 975 2.500910 CTCTCTCTCTGCCTTCCATGTT 59.499 50.000 0.00 0.00 0.00 2.71
667 976 2.109774 CTCTCTCTCTGCCTTCCATGT 58.890 52.381 0.00 0.00 0.00 3.21
668 977 2.386779 TCTCTCTCTCTGCCTTCCATG 58.613 52.381 0.00 0.00 0.00 3.66
669 978 2.844654 TCTCTCTCTCTGCCTTCCAT 57.155 50.000 0.00 0.00 0.00 3.41
670 979 2.612285 TTCTCTCTCTCTGCCTTCCA 57.388 50.000 0.00 0.00 0.00 3.53
671 980 3.096092 TCTTTCTCTCTCTCTGCCTTCC 58.904 50.000 0.00 0.00 0.00 3.46
672 981 4.016444 TCTCTTTCTCTCTCTCTGCCTTC 58.984 47.826 0.00 0.00 0.00 3.46
673 982 4.019174 CTCTCTTTCTCTCTCTCTGCCTT 58.981 47.826 0.00 0.00 0.00 4.35
674 983 3.266772 TCTCTCTTTCTCTCTCTCTGCCT 59.733 47.826 0.00 0.00 0.00 4.75
675 984 3.620488 TCTCTCTTTCTCTCTCTCTGCC 58.380 50.000 0.00 0.00 0.00 4.85
676 985 4.096984 CCTTCTCTCTTTCTCTCTCTCTGC 59.903 50.000 0.00 0.00 0.00 4.26
677 986 4.641989 CCCTTCTCTCTTTCTCTCTCTCTG 59.358 50.000 0.00 0.00 0.00 3.35
678 987 4.540099 TCCCTTCTCTCTTTCTCTCTCTCT 59.460 45.833 0.00 0.00 0.00 3.10
679 988 4.855340 TCCCTTCTCTCTTTCTCTCTCTC 58.145 47.826 0.00 0.00 0.00 3.20
680 989 4.946160 TCCCTTCTCTCTTTCTCTCTCT 57.054 45.455 0.00 0.00 0.00 3.10
681 990 4.342092 CCATCCCTTCTCTCTTTCTCTCTC 59.658 50.000 0.00 0.00 0.00 3.20
682 991 4.289245 CCATCCCTTCTCTCTTTCTCTCT 58.711 47.826 0.00 0.00 0.00 3.10
683 992 3.387699 CCCATCCCTTCTCTCTTTCTCTC 59.612 52.174 0.00 0.00 0.00 3.20
684 993 3.383223 CCCATCCCTTCTCTCTTTCTCT 58.617 50.000 0.00 0.00 0.00 3.10
685 994 2.437651 CCCCATCCCTTCTCTCTTTCTC 59.562 54.545 0.00 0.00 0.00 2.87
686 995 2.486716 CCCCATCCCTTCTCTCTTTCT 58.513 52.381 0.00 0.00 0.00 2.52
687 996 1.492599 CCCCCATCCCTTCTCTCTTTC 59.507 57.143 0.00 0.00 0.00 2.62
688 997 1.082879 TCCCCCATCCCTTCTCTCTTT 59.917 52.381 0.00 0.00 0.00 2.52
689 998 0.725133 TCCCCCATCCCTTCTCTCTT 59.275 55.000 0.00 0.00 0.00 2.85
690 999 0.030603 GTCCCCCATCCCTTCTCTCT 60.031 60.000 0.00 0.00 0.00 3.10
691 1000 1.403687 CGTCCCCCATCCCTTCTCTC 61.404 65.000 0.00 0.00 0.00 3.20
692 1001 1.383248 CGTCCCCCATCCCTTCTCT 60.383 63.158 0.00 0.00 0.00 3.10
693 1002 1.689582 ACGTCCCCCATCCCTTCTC 60.690 63.158 0.00 0.00 0.00 2.87
694 1003 1.995626 CACGTCCCCCATCCCTTCT 60.996 63.158 0.00 0.00 0.00 2.85
695 1004 1.972660 CTCACGTCCCCCATCCCTTC 61.973 65.000 0.00 0.00 0.00 3.46
696 1005 1.995626 CTCACGTCCCCCATCCCTT 60.996 63.158 0.00 0.00 0.00 3.95
697 1006 2.257541 ATCTCACGTCCCCCATCCCT 62.258 60.000 0.00 0.00 0.00 4.20
698 1007 1.345715 AATCTCACGTCCCCCATCCC 61.346 60.000 0.00 0.00 0.00 3.85
699 1008 0.179045 CAATCTCACGTCCCCCATCC 60.179 60.000 0.00 0.00 0.00 3.51
700 1009 0.179045 CCAATCTCACGTCCCCCATC 60.179 60.000 0.00 0.00 0.00 3.51
701 1010 0.620410 TCCAATCTCACGTCCCCCAT 60.620 55.000 0.00 0.00 0.00 4.00
702 1011 1.229368 TCCAATCTCACGTCCCCCA 60.229 57.895 0.00 0.00 0.00 4.96
703 1012 1.221021 GTCCAATCTCACGTCCCCC 59.779 63.158 0.00 0.00 0.00 5.40
704 1013 1.153628 CGTCCAATCTCACGTCCCC 60.154 63.158 0.00 0.00 0.00 4.81
705 1014 0.245539 TTCGTCCAATCTCACGTCCC 59.754 55.000 0.00 0.00 37.30 4.46
706 1015 1.630148 CTTCGTCCAATCTCACGTCC 58.370 55.000 0.00 0.00 37.30 4.79
707 1016 1.201647 TCCTTCGTCCAATCTCACGTC 59.798 52.381 0.00 0.00 37.30 4.34
708 1017 1.254026 TCCTTCGTCCAATCTCACGT 58.746 50.000 0.00 0.00 37.30 4.49
709 1018 2.363788 TTCCTTCGTCCAATCTCACG 57.636 50.000 0.00 0.00 37.36 4.35
710 1019 3.003480 CCTTTCCTTCGTCCAATCTCAC 58.997 50.000 0.00 0.00 0.00 3.51
711 1020 2.637872 ACCTTTCCTTCGTCCAATCTCA 59.362 45.455 0.00 0.00 0.00 3.27
712 1021 3.003480 CACCTTTCCTTCGTCCAATCTC 58.997 50.000 0.00 0.00 0.00 2.75
713 1022 2.637872 TCACCTTTCCTTCGTCCAATCT 59.362 45.455 0.00 0.00 0.00 2.40
714 1023 3.053831 TCACCTTTCCTTCGTCCAATC 57.946 47.619 0.00 0.00 0.00 2.67
715 1024 3.502123 TTCACCTTTCCTTCGTCCAAT 57.498 42.857 0.00 0.00 0.00 3.16
716 1025 2.946990 GTTTCACCTTTCCTTCGTCCAA 59.053 45.455 0.00 0.00 0.00 3.53
717 1026 2.567985 GTTTCACCTTTCCTTCGTCCA 58.432 47.619 0.00 0.00 0.00 4.02
718 1027 1.529865 CGTTTCACCTTTCCTTCGTCC 59.470 52.381 0.00 0.00 0.00 4.79
719 1028 1.529865 CCGTTTCACCTTTCCTTCGTC 59.470 52.381 0.00 0.00 0.00 4.20
720 1029 1.139455 TCCGTTTCACCTTTCCTTCGT 59.861 47.619 0.00 0.00 0.00 3.85
721 1030 1.873698 TCCGTTTCACCTTTCCTTCG 58.126 50.000 0.00 0.00 0.00 3.79
722 1031 3.550233 GCTTTCCGTTTCACCTTTCCTTC 60.550 47.826 0.00 0.00 0.00 3.46
723 1032 2.361119 GCTTTCCGTTTCACCTTTCCTT 59.639 45.455 0.00 0.00 0.00 3.36
724 1033 1.954382 GCTTTCCGTTTCACCTTTCCT 59.046 47.619 0.00 0.00 0.00 3.36
725 1034 1.954382 AGCTTTCCGTTTCACCTTTCC 59.046 47.619 0.00 0.00 0.00 3.13
726 1035 3.710326 AAGCTTTCCGTTTCACCTTTC 57.290 42.857 0.00 0.00 0.00 2.62
727 1036 4.583073 ACATAAGCTTTCCGTTTCACCTTT 59.417 37.500 3.20 0.00 0.00 3.11
728 1037 4.142038 ACATAAGCTTTCCGTTTCACCTT 58.858 39.130 3.20 0.00 0.00 3.50
729 1038 3.751518 ACATAAGCTTTCCGTTTCACCT 58.248 40.909 3.20 0.00 0.00 4.00
730 1039 4.499037 AACATAAGCTTTCCGTTTCACC 57.501 40.909 3.20 0.00 0.00 4.02
731 1040 6.822073 AAAAACATAAGCTTTCCGTTTCAC 57.178 33.333 3.20 0.00 0.00 3.18
763 1072 9.166222 TCTCTACTACTAAATCTCCATCTCTCT 57.834 37.037 0.00 0.00 0.00 3.10
764 1073 9.959721 ATCTCTACTACTAAATCTCCATCTCTC 57.040 37.037 0.00 0.00 0.00 3.20
768 1077 9.834628 CGAAATCTCTACTACTAAATCTCCATC 57.165 37.037 0.00 0.00 0.00 3.51
769 1078 8.301002 GCGAAATCTCTACTACTAAATCTCCAT 58.699 37.037 0.00 0.00 0.00 3.41
770 1079 7.284716 TGCGAAATCTCTACTACTAAATCTCCA 59.715 37.037 0.00 0.00 0.00 3.86
771 1080 7.592164 GTGCGAAATCTCTACTACTAAATCTCC 59.408 40.741 0.00 0.00 0.00 3.71
772 1081 7.592164 GGTGCGAAATCTCTACTACTAAATCTC 59.408 40.741 0.00 0.00 0.00 2.75
773 1082 7.427214 GGTGCGAAATCTCTACTACTAAATCT 58.573 38.462 0.00 0.00 0.00 2.40
774 1083 6.360148 CGGTGCGAAATCTCTACTACTAAATC 59.640 42.308 0.00 0.00 0.00 2.17
775 1084 6.207213 CGGTGCGAAATCTCTACTACTAAAT 58.793 40.000 0.00 0.00 0.00 1.40
776 1085 5.449588 CCGGTGCGAAATCTCTACTACTAAA 60.450 44.000 0.00 0.00 0.00 1.85
777 1086 4.036027 CCGGTGCGAAATCTCTACTACTAA 59.964 45.833 0.00 0.00 0.00 2.24
778 1087 3.562973 CCGGTGCGAAATCTCTACTACTA 59.437 47.826 0.00 0.00 0.00 1.82
779 1088 2.358267 CCGGTGCGAAATCTCTACTACT 59.642 50.000 0.00 0.00 0.00 2.57
780 1089 2.357009 TCCGGTGCGAAATCTCTACTAC 59.643 50.000 0.00 0.00 0.00 2.73
781 1090 2.646930 TCCGGTGCGAAATCTCTACTA 58.353 47.619 0.00 0.00 0.00 1.82
782 1091 1.471119 TCCGGTGCGAAATCTCTACT 58.529 50.000 0.00 0.00 0.00 2.57
783 1092 2.288961 TTCCGGTGCGAAATCTCTAC 57.711 50.000 0.00 0.00 0.00 2.59
784 1093 3.536956 ATTTCCGGTGCGAAATCTCTA 57.463 42.857 0.00 0.00 37.85 2.43
785 1094 2.403252 ATTTCCGGTGCGAAATCTCT 57.597 45.000 0.00 0.00 37.85 3.10
786 1095 4.272504 TCATAATTTCCGGTGCGAAATCTC 59.727 41.667 0.00 0.00 40.71 2.75
787 1096 4.196193 TCATAATTTCCGGTGCGAAATCT 58.804 39.130 0.00 0.00 40.71 2.40
788 1097 4.272504 TCTCATAATTTCCGGTGCGAAATC 59.727 41.667 0.00 0.00 40.71 2.17
789 1098 4.196193 TCTCATAATTTCCGGTGCGAAAT 58.804 39.130 0.00 0.00 42.84 2.17
806 1115 0.263172 ATCTCCACGTCCCCTCTCAT 59.737 55.000 0.00 0.00 0.00 2.90
809 1118 0.396417 CAGATCTCCACGTCCCCTCT 60.396 60.000 0.00 0.00 0.00 3.69
810 1119 0.395862 TCAGATCTCCACGTCCCCTC 60.396 60.000 0.00 0.00 0.00 4.30
822 1131 9.821240 AGAGGTCTATTTATACACATCAGATCT 57.179 33.333 0.00 0.00 0.00 2.75
894 1203 1.144298 GTTACCACTCACCCAAACCCT 59.856 52.381 0.00 0.00 0.00 4.34
898 1207 4.708576 TGTATGTTACCACTCACCCAAA 57.291 40.909 0.00 0.00 0.00 3.28
901 1210 3.199071 TGGATGTATGTTACCACTCACCC 59.801 47.826 0.00 0.00 0.00 4.61
907 1216 4.689071 TGACGATGGATGTATGTTACCAC 58.311 43.478 0.00 0.00 35.19 4.16
913 1222 7.904558 AGGATATATGACGATGGATGTATGT 57.095 36.000 0.00 0.00 0.00 2.29
914 1223 9.038803 CAAAGGATATATGACGATGGATGTATG 57.961 37.037 0.00 0.00 0.00 2.39
915 1224 7.712639 GCAAAGGATATATGACGATGGATGTAT 59.287 37.037 0.00 0.00 0.00 2.29
960 1271 0.098025 GGAGAGTGCGAACGAGAGAG 59.902 60.000 0.00 0.00 0.00 3.20
961 1272 0.321741 AGGAGAGTGCGAACGAGAGA 60.322 55.000 0.00 0.00 0.00 3.10
971 1282 2.625790 ACGATATGAGGAAGGAGAGTGC 59.374 50.000 0.00 0.00 0.00 4.40
973 1284 3.142951 CGACGATATGAGGAAGGAGAGT 58.857 50.000 0.00 0.00 0.00 3.24
986 1297 1.816835 ACGCCATATGGTCGACGATAT 59.183 47.619 31.64 22.81 37.85 1.63
987 1298 1.198408 GACGCCATATGGTCGACGATA 59.802 52.381 31.64 20.51 37.85 2.92
996 1307 0.319728 CAGAGGAGGACGCCATATGG 59.680 60.000 18.07 18.07 38.53 2.74
1188 1499 0.039798 TACTCGTGCTTGTCACCGAC 60.040 55.000 0.00 0.00 42.69 4.79
1191 1502 3.179830 CAGTATACTCGTGCTTGTCACC 58.820 50.000 1.26 0.00 42.69 4.02
1192 1503 2.599082 GCAGTATACTCGTGCTTGTCAC 59.401 50.000 1.26 0.00 42.23 3.67
1195 1506 3.190079 CATGCAGTATACTCGTGCTTGT 58.810 45.455 16.85 4.27 37.50 3.16
1198 1509 1.136891 TGCATGCAGTATACTCGTGCT 59.863 47.619 29.25 12.56 38.09 4.40
1199 1510 1.258982 GTGCATGCAGTATACTCGTGC 59.741 52.381 23.41 26.19 37.73 5.34
1200 1511 1.518515 CGTGCATGCAGTATACTCGTG 59.481 52.381 23.41 10.50 0.00 4.35
1203 1514 3.966154 AGTACGTGCATGCAGTATACTC 58.034 45.455 23.41 12.58 0.00 2.59
1220 1556 5.905181 CCAACACAATTTCAACACGTAGTAC 59.095 40.000 0.00 0.00 41.61 2.73
1221 1557 5.816258 TCCAACACAATTTCAACACGTAGTA 59.184 36.000 0.00 0.00 41.61 1.82
1223 1559 5.163302 TCCAACACAATTTCAACACGTAG 57.837 39.130 0.00 0.00 0.00 3.51
1236 1574 2.941720 GCAAGCCAAAATTCCAACACAA 59.058 40.909 0.00 0.00 0.00 3.33
1238 1576 2.545106 CTGCAAGCCAAAATTCCAACAC 59.455 45.455 0.00 0.00 0.00 3.32
1239 1577 2.170187 ACTGCAAGCCAAAATTCCAACA 59.830 40.909 0.00 0.00 37.60 3.33
1240 1578 2.545106 CACTGCAAGCCAAAATTCCAAC 59.455 45.455 0.00 0.00 37.60 3.77
1252 1613 0.164647 CGTAGCTGAACACTGCAAGC 59.835 55.000 0.00 0.00 37.60 4.01
1279 1640 3.499929 CTCCGTCACCGTGTGCACT 62.500 63.158 19.41 0.00 32.98 4.40
1565 1944 1.302033 AGAACAGCGCCACCTTGAG 60.302 57.895 2.29 0.00 0.00 3.02
1670 2104 2.512745 ACGCAGACCAACGTGCAA 60.513 55.556 0.00 0.00 41.76 4.08
1697 2131 1.507141 CTCTGGCACGACCACAAACC 61.507 60.000 0.00 0.00 46.36 3.27
1698 2132 1.941812 CTCTGGCACGACCACAAAC 59.058 57.895 0.00 0.00 46.36 2.93
1713 2147 2.923121 ACGCACAATCCATAATGCTCT 58.077 42.857 0.00 0.00 35.88 4.09
1735 2169 3.557595 CAGGGATAGAAAGCATTCGTCAC 59.442 47.826 10.68 7.89 40.63 3.67
1738 2172 3.197766 TGTCAGGGATAGAAAGCATTCGT 59.802 43.478 0.00 0.00 40.63 3.85
1739 2173 3.797039 TGTCAGGGATAGAAAGCATTCG 58.203 45.455 0.00 0.00 40.63 3.34
1740 2174 4.775236 ACTGTCAGGGATAGAAAGCATTC 58.225 43.478 4.53 0.00 35.70 2.67
1741 2175 4.851639 ACTGTCAGGGATAGAAAGCATT 57.148 40.909 4.53 0.00 0.00 3.56
1742 2176 4.472833 AGAACTGTCAGGGATAGAAAGCAT 59.527 41.667 4.53 0.00 0.00 3.79
1743 2177 3.840666 AGAACTGTCAGGGATAGAAAGCA 59.159 43.478 4.53 0.00 0.00 3.91
1744 2178 4.479786 AGAACTGTCAGGGATAGAAAGC 57.520 45.455 4.53 0.00 0.00 3.51
1745 2179 6.091441 CGAAAAGAACTGTCAGGGATAGAAAG 59.909 42.308 4.53 0.00 0.00 2.62
1747 2181 5.011738 ACGAAAAGAACTGTCAGGGATAGAA 59.988 40.000 4.53 0.00 0.00 2.10
1749 2183 4.822026 ACGAAAAGAACTGTCAGGGATAG 58.178 43.478 4.53 0.00 0.00 2.08
1751 2185 3.771577 ACGAAAAGAACTGTCAGGGAT 57.228 42.857 4.53 0.00 0.00 3.85
1752 2186 4.675976 TTACGAAAAGAACTGTCAGGGA 57.324 40.909 4.53 0.00 0.00 4.20
1753 2187 6.872020 TCTTATTACGAAAAGAACTGTCAGGG 59.128 38.462 4.53 0.00 0.00 4.45
1754 2188 7.884816 TCTTATTACGAAAAGAACTGTCAGG 57.115 36.000 4.53 0.00 0.00 3.86
1764 2198 9.820229 TGCACAAAGTATTCTTATTACGAAAAG 57.180 29.630 0.00 0.00 33.09 2.27
1768 2202 8.766000 TCTTGCACAAAGTATTCTTATTACGA 57.234 30.769 0.00 0.00 37.18 3.43
1777 2213 8.131731 AGAGACTTTTTCTTGCACAAAGTATTC 58.868 33.333 10.83 11.20 40.15 1.75
1779 2215 7.573968 AGAGACTTTTTCTTGCACAAAGTAT 57.426 32.000 10.83 8.81 40.15 2.12
1806 2242 4.570930 ACTTTTTCTTGTTCCCGCAAAAA 58.429 34.783 0.00 0.00 0.00 1.94
1807 2243 4.081917 AGACTTTTTCTTGTTCCCGCAAAA 60.082 37.500 0.00 0.00 0.00 2.44
1808 2244 3.445805 AGACTTTTTCTTGTTCCCGCAAA 59.554 39.130 0.00 0.00 0.00 3.68
1809 2245 3.020984 AGACTTTTTCTTGTTCCCGCAA 58.979 40.909 0.00 0.00 0.00 4.85
1810 2246 2.616842 GAGACTTTTTCTTGTTCCCGCA 59.383 45.455 0.00 0.00 33.22 5.69
1811 2247 2.879026 AGAGACTTTTTCTTGTTCCCGC 59.121 45.455 0.00 0.00 33.22 6.13
1812 2248 4.848757 CAAGAGACTTTTTCTTGTTCCCG 58.151 43.478 6.79 0.00 44.05 5.14
1948 2384 2.485122 GCTGCATTTTAGCGCGGT 59.515 55.556 17.70 17.70 36.85 5.68
2143 2586 9.295214 TGTATTGTTGAACTATTTGTTGTGTTG 57.705 29.630 0.00 0.00 39.30 3.33
2214 2657 0.987294 CTCATTGAGGAGTGGTGGGT 59.013 55.000 5.73 0.00 0.00 4.51
2256 2699 1.671054 CCATTCAACGTCCCGCAGT 60.671 57.895 0.00 0.00 0.00 4.40
2268 2711 1.776063 TGCCTCCTATCATGCCATTCA 59.224 47.619 0.00 0.00 0.00 2.57



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.