Multiple sequence alignment - TraesCS5A01G246800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G246800 chr5A 100.000 3663 0 0 1 3663 461006606 461010268 0.000000e+00 6765.0
1 TraesCS5A01G246800 chr5A 90.962 863 29 16 834 1664 461232003 461231158 0.000000e+00 1116.0
2 TraesCS5A01G246800 chr5A 92.664 518 26 4 2286 2797 461230032 461229521 0.000000e+00 736.0
3 TraesCS5A01G246800 chr5A 88.806 536 26 16 1750 2267 461231158 461230639 8.640000e-176 627.0
4 TraesCS5A01G246800 chr5A 84.008 519 46 19 291 798 461232804 461232312 7.160000e-127 464.0
5 TraesCS5A01G246800 chr5A 95.588 68 1 2 1 68 461262250 461262185 1.390000e-19 108.0
6 TraesCS5A01G246800 chr5A 94.737 57 1 2 1 57 461263878 461263824 1.810000e-13 87.9
7 TraesCS5A01G246800 chr5D 88.080 3515 192 104 284 3663 360047962 360051384 0.000000e+00 3960.0
8 TraesCS5A01G246800 chr5D 84.904 2802 193 99 291 2928 360371408 360368673 0.000000e+00 2619.0
9 TraesCS5A01G246800 chr5D 84.138 145 13 1 2976 3120 360368673 360368539 8.250000e-27 132.0
10 TraesCS5A01G246800 chr5B 85.483 2039 150 79 260 2201 425379495 425381484 0.000000e+00 1991.0
11 TraesCS5A01G246800 chr5B 91.269 1489 72 24 2198 3663 425381848 425383301 0.000000e+00 1977.0
12 TraesCS5A01G246800 chr5B 87.251 1757 100 62 586 2267 425612513 425610806 0.000000e+00 1890.0
13 TraesCS5A01G246800 chr5B 90.543 645 32 12 2286 2917 425610612 425609984 0.000000e+00 826.0
14 TraesCS5A01G246800 chr5B 89.172 157 17 0 2963 3119 425609978 425609822 2.890000e-46 196.0
15 TraesCS5A01G246800 chrUn 92.701 411 15 4 1551 1958 478540347 478539949 2.450000e-161 579.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G246800 chr5A 461006606 461010268 3662 False 6765.000000 6765 100.000000 1 3663 1 chr5A.!!$F1 3662
1 TraesCS5A01G246800 chr5A 461229521 461232804 3283 True 735.750000 1116 89.110000 291 2797 4 chr5A.!!$R1 2506
2 TraesCS5A01G246800 chr5D 360047962 360051384 3422 False 3960.000000 3960 88.080000 284 3663 1 chr5D.!!$F1 3379
3 TraesCS5A01G246800 chr5D 360368539 360371408 2869 True 1375.500000 2619 84.521000 291 3120 2 chr5D.!!$R1 2829
4 TraesCS5A01G246800 chr5B 425379495 425383301 3806 False 1984.000000 1991 88.376000 260 3663 2 chr5B.!!$F1 3403
5 TraesCS5A01G246800 chr5B 425609822 425612513 2691 True 970.666667 1890 88.988667 586 3119 3 chr5B.!!$R1 2533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.104304 GCCATCCAGTCGGTCGTTAT 59.896 55.0 0.0 0.0 0.00 1.89 F
495 519 0.304705 CATATTTCGTCACCGGCAGC 59.695 55.0 0.0 0.0 33.95 5.25 F
1348 1775 0.590230 CGTCTCGCCTCTGATTCGTC 60.590 60.0 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1921 0.106116 GGGTGGACGTATCTCCTCCT 60.106 60.0 10.80 0.00 41.85 3.69 R
1529 1999 0.109458 CGAGGTTCACGTGAATCGGA 60.109 55.0 31.97 13.34 44.69 4.55 R
2917 4676 0.035458 CTTCAGAACCTTGCCCGTCT 59.965 55.0 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.800370 GGAAGAAAAGGAGAGAAATGTTATCT 57.200 34.615 0.00 0.00 0.00 1.98
26 27 8.888716 GGAAGAAAAGGAGAGAAATGTTATCTC 58.111 37.037 4.42 4.42 42.95 2.75
27 28 8.485976 AAGAAAAGGAGAGAAATGTTATCTCG 57.514 34.615 6.56 0.00 46.31 4.04
28 29 6.536941 AGAAAAGGAGAGAAATGTTATCTCGC 59.463 38.462 6.56 1.32 46.31 5.03
29 30 5.344743 AAGGAGAGAAATGTTATCTCGCA 57.655 39.130 9.01 0.00 46.31 5.10
30 31 5.344743 AGGAGAGAAATGTTATCTCGCAA 57.655 39.130 9.01 0.00 46.31 4.85
31 32 5.734720 AGGAGAGAAATGTTATCTCGCAAA 58.265 37.500 9.01 0.00 46.31 3.68
32 33 5.582665 AGGAGAGAAATGTTATCTCGCAAAC 59.417 40.000 9.01 0.00 46.31 2.93
33 34 5.456192 AGAGAAATGTTATCTCGCAAACG 57.544 39.130 0.00 0.00 46.31 3.60
34 35 4.003519 AGAAATGTTATCTCGCAAACGC 57.996 40.909 0.00 0.00 39.84 4.84
35 36 2.825086 AATGTTATCTCGCAAACGCC 57.175 45.000 0.00 0.00 39.84 5.68
36 37 2.024176 ATGTTATCTCGCAAACGCCT 57.976 45.000 0.00 0.00 39.84 5.52
37 38 2.658373 TGTTATCTCGCAAACGCCTA 57.342 45.000 0.00 0.00 39.84 3.93
38 39 2.962125 TGTTATCTCGCAAACGCCTAA 58.038 42.857 0.00 0.00 39.84 2.69
39 40 3.327626 TGTTATCTCGCAAACGCCTAAA 58.672 40.909 0.00 0.00 39.84 1.85
40 41 3.123959 TGTTATCTCGCAAACGCCTAAAC 59.876 43.478 0.00 0.00 39.84 2.01
41 42 2.094762 ATCTCGCAAACGCCTAAACT 57.905 45.000 0.00 0.00 39.84 2.66
42 43 1.873698 TCTCGCAAACGCCTAAACTT 58.126 45.000 0.00 0.00 39.84 2.66
43 44 1.529438 TCTCGCAAACGCCTAAACTTG 59.471 47.619 0.00 0.00 39.84 3.16
44 45 1.263217 CTCGCAAACGCCTAAACTTGT 59.737 47.619 0.00 0.00 39.84 3.16
45 46 1.262151 TCGCAAACGCCTAAACTTGTC 59.738 47.619 0.00 0.00 39.84 3.18
46 47 1.003331 CGCAAACGCCTAAACTTGTCA 60.003 47.619 0.00 0.00 0.00 3.58
47 48 2.350388 CGCAAACGCCTAAACTTGTCAT 60.350 45.455 0.00 0.00 0.00 3.06
48 49 2.979813 GCAAACGCCTAAACTTGTCATG 59.020 45.455 0.00 0.00 0.00 3.07
49 50 2.979813 CAAACGCCTAAACTTGTCATGC 59.020 45.455 0.00 0.00 0.00 4.06
50 51 1.165270 ACGCCTAAACTTGTCATGCC 58.835 50.000 0.00 0.00 0.00 4.40
51 52 1.164411 CGCCTAAACTTGTCATGCCA 58.836 50.000 0.00 0.00 0.00 4.92
52 53 1.745087 CGCCTAAACTTGTCATGCCAT 59.255 47.619 0.00 0.00 0.00 4.40
53 54 2.478370 CGCCTAAACTTGTCATGCCATG 60.478 50.000 0.00 0.00 0.00 3.66
54 55 2.736400 GCCTAAACTTGTCATGCCATGC 60.736 50.000 0.00 0.00 0.00 4.06
55 56 2.159198 CCTAAACTTGTCATGCCATGCC 60.159 50.000 0.00 0.00 0.00 4.40
56 57 1.340088 AAACTTGTCATGCCATGCCA 58.660 45.000 0.00 0.00 0.00 4.92
57 58 1.340088 AACTTGTCATGCCATGCCAA 58.660 45.000 0.79 0.79 0.00 4.52
58 59 0.604578 ACTTGTCATGCCATGCCAAC 59.395 50.000 0.00 0.00 0.00 3.77
59 60 0.892755 CTTGTCATGCCATGCCAACT 59.107 50.000 0.00 0.00 0.00 3.16
60 61 2.093890 CTTGTCATGCCATGCCAACTA 58.906 47.619 0.00 0.00 0.00 2.24
61 62 2.212812 TGTCATGCCATGCCAACTAA 57.787 45.000 0.00 0.00 0.00 2.24
62 63 2.523245 TGTCATGCCATGCCAACTAAA 58.477 42.857 0.00 0.00 0.00 1.85
63 64 2.492881 TGTCATGCCATGCCAACTAAAG 59.507 45.455 0.00 0.00 0.00 1.85
64 65 2.493278 GTCATGCCATGCCAACTAAAGT 59.507 45.455 0.00 0.00 0.00 2.66
65 66 3.056607 GTCATGCCATGCCAACTAAAGTT 60.057 43.478 0.00 0.00 39.12 2.66
76 77 3.297830 AACTAAAGTTGCGGGATTTGC 57.702 42.857 0.00 0.00 36.80 3.68
77 78 1.544246 ACTAAAGTTGCGGGATTTGCC 59.456 47.619 0.00 0.00 0.00 4.52
78 79 0.523966 TAAAGTTGCGGGATTTGCCG 59.476 50.000 6.11 6.11 37.63 5.69
79 80 1.460273 AAAGTTGCGGGATTTGCCGT 61.460 50.000 12.19 0.00 37.63 5.68
80 81 2.126502 GTTGCGGGATTTGCCGTG 60.127 61.111 12.19 0.00 37.63 4.94
81 82 2.281831 TTGCGGGATTTGCCGTGA 60.282 55.556 12.19 0.00 37.63 4.35
82 83 1.677300 TTGCGGGATTTGCCGTGAT 60.677 52.632 12.19 0.00 37.63 3.06
83 84 1.653094 TTGCGGGATTTGCCGTGATC 61.653 55.000 12.19 0.00 37.63 2.92
84 85 3.014036 CGGGATTTGCCGTGATCG 58.986 61.111 1.95 0.00 37.63 3.69
96 97 2.638556 CGTGATCGGAGTCAGAAGTT 57.361 50.000 0.00 0.00 0.00 2.66
97 98 2.254459 CGTGATCGGAGTCAGAAGTTG 58.746 52.381 0.00 0.00 0.00 3.16
98 99 1.996191 GTGATCGGAGTCAGAAGTTGC 59.004 52.381 0.00 0.00 0.00 4.17
99 100 1.066858 TGATCGGAGTCAGAAGTTGCC 60.067 52.381 0.00 0.00 0.00 4.52
100 101 0.976641 ATCGGAGTCAGAAGTTGCCA 59.023 50.000 0.00 0.00 0.00 4.92
101 102 0.976641 TCGGAGTCAGAAGTTGCCAT 59.023 50.000 0.00 0.00 0.00 4.40
102 103 1.066858 TCGGAGTCAGAAGTTGCCATC 60.067 52.381 0.00 0.00 0.00 3.51
103 104 1.743996 GGAGTCAGAAGTTGCCATCC 58.256 55.000 0.00 0.00 0.00 3.51
104 105 1.003580 GGAGTCAGAAGTTGCCATCCA 59.996 52.381 0.00 0.00 0.00 3.41
105 106 2.079925 GAGTCAGAAGTTGCCATCCAC 58.920 52.381 0.00 0.00 0.00 4.02
106 107 1.168714 GTCAGAAGTTGCCATCCACC 58.831 55.000 0.00 0.00 0.00 4.61
107 108 0.770499 TCAGAAGTTGCCATCCACCA 59.230 50.000 0.00 0.00 0.00 4.17
108 109 1.355381 TCAGAAGTTGCCATCCACCAT 59.645 47.619 0.00 0.00 0.00 3.55
109 110 1.475280 CAGAAGTTGCCATCCACCATG 59.525 52.381 0.00 0.00 0.00 3.66
110 111 1.355381 AGAAGTTGCCATCCACCATGA 59.645 47.619 0.00 0.00 33.80 3.07
111 112 2.170166 GAAGTTGCCATCCACCATGAA 58.830 47.619 0.00 0.00 33.80 2.57
112 113 2.307496 AGTTGCCATCCACCATGAAA 57.693 45.000 0.00 0.00 33.80 2.69
113 114 2.607499 AGTTGCCATCCACCATGAAAA 58.393 42.857 0.00 0.00 33.80 2.29
114 115 2.971330 AGTTGCCATCCACCATGAAAAA 59.029 40.909 0.00 0.00 33.80 1.94
135 136 4.385358 AAAAGGCAGAAAATTGACACGT 57.615 36.364 0.00 0.00 0.00 4.49
136 137 4.385358 AAAGGCAGAAAATTGACACGTT 57.615 36.364 0.00 0.00 0.00 3.99
137 138 3.354089 AGGCAGAAAATTGACACGTTG 57.646 42.857 0.00 0.00 0.00 4.10
138 139 2.687935 AGGCAGAAAATTGACACGTTGT 59.312 40.909 0.00 0.00 0.00 3.32
139 140 2.788786 GGCAGAAAATTGACACGTTGTG 59.211 45.455 0.00 0.00 39.75 3.33
140 141 2.216263 GCAGAAAATTGACACGTTGTGC 59.784 45.455 0.00 0.00 36.98 4.57
141 142 3.433709 CAGAAAATTGACACGTTGTGCA 58.566 40.909 0.00 0.00 36.98 4.57
142 143 3.240401 CAGAAAATTGACACGTTGTGCAC 59.760 43.478 10.75 10.75 36.98 4.57
143 144 2.929531 AAATTGACACGTTGTGCACA 57.070 40.000 17.42 17.42 36.98 4.57
144 145 2.473530 AATTGACACGTTGTGCACAG 57.526 45.000 20.59 12.15 36.98 3.66
145 146 1.662517 ATTGACACGTTGTGCACAGA 58.337 45.000 20.59 8.58 36.98 3.41
146 147 0.724549 TTGACACGTTGTGCACAGAC 59.275 50.000 20.59 18.46 36.98 3.51
147 148 0.390472 TGACACGTTGTGCACAGACA 60.390 50.000 20.59 11.86 36.98 3.41
148 149 0.724549 GACACGTTGTGCACAGACAA 59.275 50.000 20.59 1.55 36.98 3.18
149 150 1.129624 GACACGTTGTGCACAGACAAA 59.870 47.619 20.59 1.10 37.58 2.83
150 151 1.742831 ACACGTTGTGCACAGACAAAT 59.257 42.857 20.59 2.71 37.58 2.32
151 152 2.163412 ACACGTTGTGCACAGACAAATT 59.837 40.909 20.59 0.00 37.58 1.82
152 153 2.531103 CACGTTGTGCACAGACAAATTG 59.469 45.455 20.59 7.79 37.58 2.32
153 154 1.518102 CGTTGTGCACAGACAAATTGC 59.482 47.619 20.59 2.65 37.58 3.56
154 155 1.860326 GTTGTGCACAGACAAATTGCC 59.140 47.619 20.59 0.00 37.58 4.52
155 156 1.109609 TGTGCACAGACAAATTGCCA 58.890 45.000 17.42 0.00 35.26 4.92
156 157 1.687660 TGTGCACAGACAAATTGCCAT 59.312 42.857 17.42 0.00 35.26 4.40
157 158 2.288334 TGTGCACAGACAAATTGCCATC 60.288 45.455 17.42 0.00 35.26 3.51
158 159 1.273048 TGCACAGACAAATTGCCATCC 59.727 47.619 0.00 0.00 35.26 3.51
159 160 1.273048 GCACAGACAAATTGCCATCCA 59.727 47.619 0.00 0.00 0.00 3.41
160 161 2.673043 GCACAGACAAATTGCCATCCAG 60.673 50.000 0.00 0.00 0.00 3.86
161 162 2.559668 CACAGACAAATTGCCATCCAGT 59.440 45.455 0.00 0.00 0.00 4.00
162 163 2.821969 ACAGACAAATTGCCATCCAGTC 59.178 45.455 0.00 0.00 0.00 3.51
163 164 2.086869 AGACAAATTGCCATCCAGTCG 58.913 47.619 0.00 0.00 0.00 4.18
164 165 1.133025 GACAAATTGCCATCCAGTCGG 59.867 52.381 0.00 0.00 0.00 4.79
165 166 1.176527 CAAATTGCCATCCAGTCGGT 58.823 50.000 0.00 0.00 0.00 4.69
166 167 1.133025 CAAATTGCCATCCAGTCGGTC 59.867 52.381 0.00 0.00 0.00 4.79
167 168 0.744414 AATTGCCATCCAGTCGGTCG 60.744 55.000 0.00 0.00 0.00 4.79
168 169 1.899437 ATTGCCATCCAGTCGGTCGT 61.899 55.000 0.00 0.00 0.00 4.34
169 170 2.107041 TTGCCATCCAGTCGGTCGTT 62.107 55.000 0.00 0.00 0.00 3.85
170 171 1.252215 TGCCATCCAGTCGGTCGTTA 61.252 55.000 0.00 0.00 0.00 3.18
171 172 0.104304 GCCATCCAGTCGGTCGTTAT 59.896 55.000 0.00 0.00 0.00 1.89
172 173 1.868519 GCCATCCAGTCGGTCGTTATC 60.869 57.143 0.00 0.00 0.00 1.75
173 174 1.269621 CCATCCAGTCGGTCGTTATCC 60.270 57.143 0.00 0.00 0.00 2.59
183 184 3.752796 TCGTTATCCGAGGGCTTTG 57.247 52.632 0.00 0.00 41.60 2.77
184 185 1.187974 TCGTTATCCGAGGGCTTTGA 58.812 50.000 0.00 0.00 41.60 2.69
185 186 1.136305 TCGTTATCCGAGGGCTTTGAG 59.864 52.381 0.00 0.00 41.60 3.02
186 187 1.806623 CGTTATCCGAGGGCTTTGAGG 60.807 57.143 0.00 0.00 39.56 3.86
187 188 0.837272 TTATCCGAGGGCTTTGAGGG 59.163 55.000 0.00 0.00 0.00 4.30
188 189 1.696097 TATCCGAGGGCTTTGAGGGC 61.696 60.000 0.00 0.00 0.00 5.19
189 190 4.033776 CCGAGGGCTTTGAGGGCA 62.034 66.667 0.00 0.00 0.00 5.36
190 191 2.273449 CGAGGGCTTTGAGGGCAT 59.727 61.111 0.00 0.00 0.00 4.40
191 192 1.379044 CGAGGGCTTTGAGGGCATT 60.379 57.895 0.00 0.00 0.00 3.56
192 193 1.379642 CGAGGGCTTTGAGGGCATTC 61.380 60.000 0.00 0.00 0.00 2.67
193 194 1.379044 AGGGCTTTGAGGGCATTCG 60.379 57.895 0.00 0.00 0.00 3.34
194 195 2.491621 GGCTTTGAGGGCATTCGC 59.508 61.111 0.00 0.00 37.44 4.70
195 196 2.048603 GGCTTTGAGGGCATTCGCT 61.049 57.895 0.00 0.00 38.60 4.93
196 197 1.138247 GCTTTGAGGGCATTCGCTG 59.862 57.895 0.00 0.00 38.60 5.18
197 198 1.805254 CTTTGAGGGCATTCGCTGG 59.195 57.895 0.00 0.00 38.60 4.85
198 199 1.660560 CTTTGAGGGCATTCGCTGGG 61.661 60.000 0.00 0.00 38.60 4.45
199 200 2.135903 TTTGAGGGCATTCGCTGGGA 62.136 55.000 0.00 0.00 38.60 4.37
200 201 2.203126 GAGGGCATTCGCTGGGAG 60.203 66.667 0.00 0.00 38.60 4.30
201 202 4.496336 AGGGCATTCGCTGGGAGC 62.496 66.667 0.00 0.00 38.60 4.70
203 204 4.802051 GGCATTCGCTGGGAGCCA 62.802 66.667 16.77 0.00 44.59 4.75
204 205 2.517875 GCATTCGCTGGGAGCCAT 60.518 61.111 0.00 0.00 38.18 4.40
205 206 1.227943 GCATTCGCTGGGAGCCATA 60.228 57.895 0.00 0.00 38.18 2.74
206 207 0.819259 GCATTCGCTGGGAGCCATAA 60.819 55.000 0.00 0.00 38.18 1.90
207 208 1.679139 CATTCGCTGGGAGCCATAAA 58.321 50.000 0.00 0.00 38.18 1.40
208 209 2.023673 CATTCGCTGGGAGCCATAAAA 58.976 47.619 0.00 0.00 38.18 1.52
209 210 2.208132 TTCGCTGGGAGCCATAAAAA 57.792 45.000 0.00 0.00 38.18 1.94
210 211 2.435372 TCGCTGGGAGCCATAAAAAT 57.565 45.000 0.00 0.00 38.18 1.82
211 212 2.023673 TCGCTGGGAGCCATAAAAATG 58.976 47.619 0.00 0.00 38.18 2.32
212 213 1.750778 CGCTGGGAGCCATAAAAATGT 59.249 47.619 0.00 0.00 38.18 2.71
213 214 2.480073 CGCTGGGAGCCATAAAAATGTG 60.480 50.000 0.00 0.00 38.18 3.21
214 215 2.760092 GCTGGGAGCCATAAAAATGTGA 59.240 45.455 0.00 0.00 34.48 3.58
215 216 3.385755 GCTGGGAGCCATAAAAATGTGAT 59.614 43.478 0.00 0.00 34.48 3.06
216 217 4.738541 GCTGGGAGCCATAAAAATGTGATG 60.739 45.833 0.00 0.00 34.48 3.07
217 218 4.352009 TGGGAGCCATAAAAATGTGATGT 58.648 39.130 0.00 0.00 0.00 3.06
218 219 4.402155 TGGGAGCCATAAAAATGTGATGTC 59.598 41.667 0.00 0.00 0.00 3.06
219 220 4.202151 GGGAGCCATAAAAATGTGATGTCC 60.202 45.833 0.00 0.00 0.00 4.02
220 221 4.202151 GGAGCCATAAAAATGTGATGTCCC 60.202 45.833 0.00 0.00 0.00 4.46
221 222 3.706086 AGCCATAAAAATGTGATGTCCCC 59.294 43.478 0.00 0.00 0.00 4.81
222 223 3.490761 GCCATAAAAATGTGATGTCCCCG 60.491 47.826 0.00 0.00 0.00 5.73
223 224 3.068024 CCATAAAAATGTGATGTCCCCGG 59.932 47.826 0.00 0.00 0.00 5.73
224 225 1.555967 AAAAATGTGATGTCCCCGGG 58.444 50.000 15.80 15.80 0.00 5.73
225 226 0.324275 AAAATGTGATGTCCCCGGGG 60.324 55.000 35.80 35.80 0.00 5.73
226 227 1.211567 AAATGTGATGTCCCCGGGGA 61.212 55.000 39.67 39.67 42.90 4.81
234 235 2.533232 TCCCCGGGGAATTGGTGT 60.533 61.111 41.04 0.00 42.05 4.16
235 236 2.164279 TCCCCGGGGAATTGGTGTT 61.164 57.895 41.04 0.00 42.05 3.32
236 237 1.680989 CCCCGGGGAATTGGTGTTC 60.681 63.158 38.41 0.00 37.50 3.18
237 238 2.043980 CCCGGGGAATTGGTGTTCG 61.044 63.158 14.71 0.00 0.00 3.95
238 239 1.003112 CCGGGGAATTGGTGTTCGA 60.003 57.895 0.00 0.00 0.00 3.71
239 240 0.606944 CCGGGGAATTGGTGTTCGAA 60.607 55.000 0.00 0.00 0.00 3.71
240 241 1.240256 CGGGGAATTGGTGTTCGAAA 58.760 50.000 0.00 0.00 0.00 3.46
241 242 1.609555 CGGGGAATTGGTGTTCGAAAA 59.390 47.619 0.00 0.00 0.00 2.29
242 243 2.230266 CGGGGAATTGGTGTTCGAAAAT 59.770 45.455 0.00 0.00 0.00 1.82
243 244 3.440872 CGGGGAATTGGTGTTCGAAAATA 59.559 43.478 0.00 0.00 0.00 1.40
244 245 4.082679 CGGGGAATTGGTGTTCGAAAATAA 60.083 41.667 0.00 0.00 0.00 1.40
245 246 5.565045 CGGGGAATTGGTGTTCGAAAATAAA 60.565 40.000 0.00 0.00 0.00 1.40
246 247 5.636121 GGGGAATTGGTGTTCGAAAATAAAC 59.364 40.000 0.00 0.00 0.00 2.01
247 248 6.452242 GGGAATTGGTGTTCGAAAATAAACT 58.548 36.000 0.00 0.00 0.00 2.66
248 249 6.364976 GGGAATTGGTGTTCGAAAATAAACTG 59.635 38.462 0.00 0.00 0.00 3.16
249 250 6.128929 GGAATTGGTGTTCGAAAATAAACTGC 60.129 38.462 0.00 0.00 0.00 4.40
250 251 4.902443 TGGTGTTCGAAAATAAACTGCA 57.098 36.364 0.00 0.00 0.00 4.41
251 252 4.602995 TGGTGTTCGAAAATAAACTGCAC 58.397 39.130 0.00 0.00 0.00 4.57
252 253 4.096532 TGGTGTTCGAAAATAAACTGCACA 59.903 37.500 0.00 0.00 0.00 4.57
253 254 4.675114 GGTGTTCGAAAATAAACTGCACAG 59.325 41.667 0.00 0.00 0.00 3.66
254 255 5.270853 GTGTTCGAAAATAAACTGCACAGT 58.729 37.500 0.00 0.00 44.94 3.55
255 256 5.395486 GTGTTCGAAAATAAACTGCACAGTC 59.605 40.000 0.00 0.00 41.58 3.51
256 257 4.742438 TCGAAAATAAACTGCACAGTCC 57.258 40.909 3.32 0.00 41.58 3.85
257 258 3.185594 TCGAAAATAAACTGCACAGTCCG 59.814 43.478 3.32 0.85 41.58 4.79
258 259 3.185594 CGAAAATAAACTGCACAGTCCGA 59.814 43.478 3.32 0.00 41.58 4.55
259 260 4.142902 CGAAAATAAACTGCACAGTCCGAT 60.143 41.667 3.32 0.00 41.58 4.18
260 261 4.946784 AAATAAACTGCACAGTCCGATC 57.053 40.909 3.32 0.00 41.58 3.69
261 262 2.380084 TAAACTGCACAGTCCGATCC 57.620 50.000 3.32 0.00 41.58 3.36
262 263 0.396435 AAACTGCACAGTCCGATCCA 59.604 50.000 3.32 0.00 41.58 3.41
263 264 0.396435 AACTGCACAGTCCGATCCAA 59.604 50.000 3.32 0.00 41.58 3.53
264 265 0.396435 ACTGCACAGTCCGATCCAAA 59.604 50.000 0.00 0.00 36.92 3.28
265 266 1.003580 ACTGCACAGTCCGATCCAAAT 59.996 47.619 0.00 0.00 36.92 2.32
266 267 2.086869 CTGCACAGTCCGATCCAAATT 58.913 47.619 0.00 0.00 0.00 1.82
267 268 3.270027 CTGCACAGTCCGATCCAAATTA 58.730 45.455 0.00 0.00 0.00 1.40
268 269 3.680490 TGCACAGTCCGATCCAAATTAA 58.320 40.909 0.00 0.00 0.00 1.40
269 270 4.269183 TGCACAGTCCGATCCAAATTAAT 58.731 39.130 0.00 0.00 0.00 1.40
270 271 4.704540 TGCACAGTCCGATCCAAATTAATT 59.295 37.500 0.00 0.00 0.00 1.40
271 272 5.883115 TGCACAGTCCGATCCAAATTAATTA 59.117 36.000 0.01 0.00 0.00 1.40
272 273 6.375736 TGCACAGTCCGATCCAAATTAATTAA 59.624 34.615 0.01 0.00 0.00 1.40
273 274 6.691388 GCACAGTCCGATCCAAATTAATTAAC 59.309 38.462 0.01 0.00 0.00 2.01
274 275 7.627513 GCACAGTCCGATCCAAATTAATTAACA 60.628 37.037 0.01 0.00 0.00 2.41
275 276 8.405531 CACAGTCCGATCCAAATTAATTAACAT 58.594 33.333 0.01 0.00 0.00 2.71
276 277 9.621629 ACAGTCCGATCCAAATTAATTAACATA 57.378 29.630 0.01 0.00 0.00 2.29
279 280 9.673454 GTCCGATCCAAATTAATTAACATAACC 57.327 33.333 0.01 0.00 0.00 2.85
280 281 9.635404 TCCGATCCAAATTAATTAACATAACCT 57.365 29.630 0.01 0.00 0.00 3.50
281 282 9.893305 CCGATCCAAATTAATTAACATAACCTC 57.107 33.333 0.01 0.00 0.00 3.85
320 321 9.950680 TCTTAGAGTTGTAAATTTTGCTGAAAG 57.049 29.630 0.00 0.00 0.00 2.62
338 339 1.650528 AGTCCCCTCCACAGAAGAAG 58.349 55.000 0.00 0.00 0.00 2.85
407 408 2.416701 CGACAAACAAAGGCAAGGTGTT 60.417 45.455 0.00 0.00 37.07 3.32
440 441 2.096909 CGTCACATGTGTCCGTTTCTTC 60.097 50.000 24.63 4.22 0.00 2.87
444 445 2.076863 CATGTGTCCGTTTCTTCCCTC 58.923 52.381 0.00 0.00 0.00 4.30
495 519 0.304705 CATATTTCGTCACCGGCAGC 59.695 55.000 0.00 0.00 33.95 5.25
518 543 4.384846 CACACAGTATCTCTTTTTACGCGT 59.615 41.667 19.17 19.17 0.00 6.01
519 544 5.570206 CACACAGTATCTCTTTTTACGCGTA 59.430 40.000 16.41 16.41 0.00 4.42
520 545 5.570589 ACACAGTATCTCTTTTTACGCGTAC 59.429 40.000 20.44 5.86 0.00 3.67
553 591 3.105203 CCGCAACGGTAAAAGCAATATG 58.895 45.455 0.00 0.00 42.73 1.78
554 592 2.529894 CGCAACGGTAAAAGCAATATGC 59.470 45.455 0.00 0.00 45.46 3.14
574 613 9.736023 AATATGCAATAGGAAAGAAAAACGATC 57.264 29.630 0.00 0.00 28.50 3.69
583 622 7.643579 AGGAAAGAAAAACGATCAAAGAAGAG 58.356 34.615 0.00 0.00 0.00 2.85
615 672 3.108144 CACTCACGCAAAAGGAAAACAG 58.892 45.455 0.00 0.00 0.00 3.16
618 675 2.108700 CACGCAAAAGGAAAACAGTCG 58.891 47.619 0.00 0.00 0.00 4.18
645 702 3.456380 AAGGGCCAGATAGAAAAGCAA 57.544 42.857 6.18 0.00 0.00 3.91
647 704 3.294214 AGGGCCAGATAGAAAAGCAATG 58.706 45.455 6.18 0.00 0.00 2.82
697 756 0.602905 AAGGGGTTCAACGAGCGAAG 60.603 55.000 0.00 0.00 0.00 3.79
790 855 2.290705 CCCAAAATACCCTCCGTTGTCT 60.291 50.000 0.00 0.00 0.00 3.41
819 885 2.607771 GCTACGTACAAAAGACCCGTCA 60.608 50.000 0.00 0.00 33.32 4.35
823 889 1.129917 TACAAAAGACCCGTCACCCA 58.870 50.000 0.00 0.00 0.00 4.51
859 1200 1.074850 CCCCTCCTCTTCCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
860 1201 1.598856 CCCCTCCTCTTCCTCCTCCT 61.599 65.000 0.00 0.00 0.00 3.69
933 1274 2.271497 TCCGTCGAGGAGGAGGAC 59.729 66.667 6.70 0.00 45.98 3.85
934 1275 2.272797 CCGTCGAGGAGGAGGACT 59.727 66.667 6.70 0.00 45.00 3.85
935 1276 2.115911 CCGTCGAGGAGGAGGACTG 61.116 68.421 6.70 0.00 45.00 3.51
936 1277 2.115911 CGTCGAGGAGGAGGACTGG 61.116 68.421 0.00 0.00 0.00 4.00
937 1278 1.303615 GTCGAGGAGGAGGACTGGA 59.696 63.158 0.00 0.00 0.00 3.86
938 1279 0.750182 GTCGAGGAGGAGGACTGGAG 60.750 65.000 0.00 0.00 0.00 3.86
939 1280 1.454847 CGAGGAGGAGGACTGGAGG 60.455 68.421 0.00 0.00 0.00 4.30
940 1281 1.927569 CGAGGAGGAGGACTGGAGGA 61.928 65.000 0.00 0.00 0.00 3.71
1323 1738 1.555538 CTTAATCGACGCGAGCTGC 59.444 57.895 15.93 0.00 39.91 5.25
1326 1745 2.936829 TAATCGACGCGAGCTGCCTG 62.937 60.000 15.93 0.00 39.91 4.85
1348 1775 0.590230 CGTCTCGCCTCTGATTCGTC 60.590 60.000 0.00 0.00 0.00 4.20
1360 1787 3.578515 ATTCGTCCCCGTTCGCGTT 62.579 57.895 5.77 0.00 39.32 4.84
1364 1791 2.433491 TCCCCGTTCGCGTTGATG 60.433 61.111 5.77 0.00 39.32 3.07
1467 1911 0.818296 GCTTCCTCTCGCTCTACCAA 59.182 55.000 0.00 0.00 0.00 3.67
1477 1921 3.023119 TCGCTCTACCAAATACCGGTAA 58.977 45.455 20.22 1.92 38.52 2.85
1478 1922 3.067180 TCGCTCTACCAAATACCGGTAAG 59.933 47.826 20.22 10.44 38.52 2.34
1531 2001 3.818787 CCACGCCATTGCAGCTCC 61.819 66.667 0.00 0.00 37.32 4.70
1538 2008 0.379669 CCATTGCAGCTCCGATTCAC 59.620 55.000 0.00 0.00 0.00 3.18
1549 2019 0.388134 CCGATTCACGTGAACCTCGT 60.388 55.000 34.35 21.92 42.33 4.18
1582 2052 1.304381 GGGCAAGGCTTGGATGACA 60.304 57.895 27.25 0.00 0.00 3.58
1600 2070 2.590007 CAGCTGCTATCGGTGGCC 60.590 66.667 0.00 0.00 0.00 5.36
1603 2073 2.903357 CTGCTATCGGTGGCCTGT 59.097 61.111 3.32 0.00 0.00 4.00
1633 2103 1.522668 CTGCCAAGATGGACGAAACA 58.477 50.000 0.00 0.00 40.96 2.83
1690 2270 9.593134 AGATGATAATCTAATTACGATGAAGCC 57.407 33.333 0.00 0.00 0.00 4.35
1692 2272 8.763049 TGATAATCTAATTACGATGAAGCCTG 57.237 34.615 0.00 0.00 0.00 4.85
1712 2297 1.370810 GGTGCCCATTTGGTTGGTG 59.629 57.895 0.00 0.00 34.77 4.17
1726 2311 5.241403 TGGTTGGTGTGAAGATCTTGTAT 57.759 39.130 14.00 0.00 0.00 2.29
1944 2542 3.610637 GGAGCTCATCCTCTGCATC 57.389 57.895 17.19 0.00 45.64 3.91
1948 2546 0.319727 GCTCATCCTCTGCATCTCCG 60.320 60.000 0.00 0.00 0.00 4.63
2011 2630 1.680207 TCTCTGTCAGAGATGCATCGG 59.320 52.381 25.68 14.22 45.77 4.18
2014 2633 1.953138 GTCAGAGATGCATCGGCCG 60.953 63.158 22.12 22.12 40.13 6.13
2018 2637 0.811616 AGAGATGCATCGGCCGTTTC 60.812 55.000 27.15 12.47 40.13 2.78
2019 2638 1.078497 AGATGCATCGGCCGTTTCA 60.078 52.632 27.15 18.51 40.13 2.69
2020 2639 0.676466 AGATGCATCGGCCGTTTCAA 60.676 50.000 27.15 5.24 40.13 2.69
2021 2640 0.523335 GATGCATCGGCCGTTTCAAC 60.523 55.000 27.15 12.74 40.13 3.18
2043 2666 7.174080 TCAACAAAATCTAACATTGTGGATCGA 59.826 33.333 0.00 0.00 37.36 3.59
2419 4154 0.961019 TGTTGAGTTGCCATGAAGCC 59.039 50.000 0.00 0.00 0.00 4.35
2683 4431 8.975295 AGATGATGATGATTAGGACGATGATAA 58.025 33.333 0.00 0.00 0.00 1.75
2767 4518 4.081030 GCGCGCCCATCATCATCG 62.081 66.667 23.24 0.00 0.00 3.84
2768 4519 2.662857 CGCGCCCATCATCATCGT 60.663 61.111 0.00 0.00 0.00 3.73
2769 4520 2.661566 CGCGCCCATCATCATCGTC 61.662 63.158 0.00 0.00 0.00 4.20
2883 4642 2.733671 CGCGCTGTGGACATGACAG 61.734 63.158 5.56 3.97 43.22 3.51
2925 4684 3.358111 TGGATGAATAAAAGACGGGCA 57.642 42.857 0.00 0.00 0.00 5.36
2929 4688 3.149005 TGAATAAAAGACGGGCAAGGT 57.851 42.857 0.00 0.00 0.00 3.50
2949 4708 7.064016 GCAAGGTTCTGAAGTCTGAATTACTAG 59.936 40.741 4.24 0.00 36.46 2.57
3026 4791 1.852280 GTTTTGTGCGAAGACAAAGCC 59.148 47.619 9.38 2.86 44.51 4.35
3030 4795 4.445545 GCGAAGACAAAGCCGCGG 62.446 66.667 24.05 24.05 38.27 6.46
3031 4796 2.736995 CGAAGACAAAGCCGCGGA 60.737 61.111 33.48 0.00 0.00 5.54
3032 4797 2.100631 CGAAGACAAAGCCGCGGAT 61.101 57.895 33.48 23.90 0.00 4.18
3033 4798 1.425428 GAAGACAAAGCCGCGGATG 59.575 57.895 33.48 25.37 0.00 3.51
3034 4799 2.583685 GAAGACAAAGCCGCGGATGC 62.584 60.000 33.48 14.50 37.91 3.91
3105 4870 3.872603 TGGCAGGCACCGACTGTT 61.873 61.111 0.00 0.00 41.48 3.16
3186 4951 7.261325 TGATTTCCGTTGTGAAAATGAAAAGA 58.739 30.769 0.00 0.00 37.74 2.52
3187 4952 7.761704 TGATTTCCGTTGTGAAAATGAAAAGAA 59.238 29.630 0.00 0.00 37.74 2.52
3188 4953 7.891183 TTTCCGTTGTGAAAATGAAAAGAAA 57.109 28.000 0.00 0.00 31.56 2.52
3189 4954 7.891183 TTCCGTTGTGAAAATGAAAAGAAAA 57.109 28.000 0.00 0.00 0.00 2.29
3224 4989 1.857837 AGCAAACAAATTTTGGCGTCG 59.142 42.857 13.42 0.00 34.12 5.12
3230 4995 5.815964 AACAAATTTTGGCGTCGAATAAC 57.184 34.783 13.42 0.00 34.12 1.89
3274 5039 4.514441 TGACGAGGCAATACTAGCTAGTAC 59.486 45.833 31.06 20.02 41.18 2.73
3275 5040 3.497640 ACGAGGCAATACTAGCTAGTACG 59.502 47.826 31.06 27.90 41.18 3.67
3276 5041 3.120269 CGAGGCAATACTAGCTAGTACGG 60.120 52.174 31.06 25.48 41.18 4.02
3277 5042 3.819902 GAGGCAATACTAGCTAGTACGGT 59.180 47.826 31.06 18.53 41.18 4.83
3279 5044 5.380043 AGGCAATACTAGCTAGTACGGTAA 58.620 41.667 31.06 14.19 41.18 2.85
3280 5045 5.829924 AGGCAATACTAGCTAGTACGGTAAA 59.170 40.000 31.06 13.49 41.18 2.01
3282 5047 7.015001 AGGCAATACTAGCTAGTACGGTAAAAT 59.985 37.037 31.06 14.41 41.18 1.82
3283 5048 7.115947 GGCAATACTAGCTAGTACGGTAAAATG 59.884 40.741 31.06 19.83 41.18 2.32
3336 5101 2.962421 TGGAAGTGGGTTTTGCCTTTAG 59.038 45.455 0.00 0.00 37.43 1.85
3340 5105 0.563672 TGGGTTTTGCCTTTAGGGGT 59.436 50.000 0.00 0.00 37.43 4.95
3342 5107 1.621814 GGGTTTTGCCTTTAGGGGTTC 59.378 52.381 0.00 0.00 37.43 3.62
3373 5138 8.031864 ACTATCAACATCATCTATGATCGGTTC 58.968 37.037 2.41 0.00 45.23 3.62
3376 5141 6.266330 TCAACATCATCTATGATCGGTTCTCT 59.734 38.462 2.41 0.00 45.23 3.10
3377 5142 6.266168 ACATCATCTATGATCGGTTCTCTC 57.734 41.667 2.41 0.00 45.23 3.20
3410 5175 3.123050 TGCGCTTGCACACTATAGTATG 58.877 45.455 9.73 6.80 45.56 2.39
3416 5181 3.466836 TGCACACTATAGTATGGCTTGC 58.533 45.455 12.93 11.09 0.00 4.01
3539 5304 1.750399 GGTGCCATACAGTGCAGGG 60.750 63.158 0.00 0.00 38.34 4.45
3558 5323 1.559682 GGGGTGTTGAGAATCTGCCTA 59.440 52.381 0.00 0.00 34.92 3.93
3617 5382 2.028385 TGGACTCGTTAAAGCTTCTCCC 60.028 50.000 0.00 0.00 0.00 4.30
3618 5383 2.619147 GACTCGTTAAAGCTTCTCCCC 58.381 52.381 0.00 0.00 0.00 4.81
3631 5396 3.360956 CTCCCCGCCAAATTGCAGC 62.361 63.158 0.00 0.00 0.00 5.25
3658 5423 4.325028 AATGAGTGCAGCTAGATCTCAG 57.675 45.455 0.00 0.00 38.30 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.800370 AGATAACATTTCTCTCCTTTTCTTCC 57.200 34.615 0.00 0.00 0.00 3.46
1 2 8.599774 CGAGATAACATTTCTCTCCTTTTCTTC 58.400 37.037 0.00 0.00 37.96 2.87
2 3 7.065204 GCGAGATAACATTTCTCTCCTTTTCTT 59.935 37.037 0.00 0.00 37.96 2.52
4 5 6.313905 TGCGAGATAACATTTCTCTCCTTTTC 59.686 38.462 0.00 0.00 37.96 2.29
8 9 5.344743 TTGCGAGATAACATTTCTCTCCT 57.655 39.130 0.00 0.00 37.96 3.69
9 10 5.500931 CGTTTGCGAGATAACATTTCTCTCC 60.501 44.000 0.00 0.00 41.33 3.71
10 11 5.484958 CGTTTGCGAGATAACATTTCTCTC 58.515 41.667 0.00 0.00 41.33 3.20
12 13 4.022475 GCGTTTGCGAGATAACATTTCTC 58.978 43.478 0.00 0.00 41.33 2.87
13 14 3.181510 GGCGTTTGCGAGATAACATTTCT 60.182 43.478 0.00 0.00 44.10 2.52
14 15 3.098636 GGCGTTTGCGAGATAACATTTC 58.901 45.455 0.00 0.00 44.10 2.17
16 17 2.356135 AGGCGTTTGCGAGATAACATT 58.644 42.857 0.00 0.00 44.10 2.71
19 20 3.370061 AGTTTAGGCGTTTGCGAGATAAC 59.630 43.478 0.00 0.00 44.10 1.89
20 21 3.592059 AGTTTAGGCGTTTGCGAGATAA 58.408 40.909 0.00 0.00 44.10 1.75
22 23 2.094762 AGTTTAGGCGTTTGCGAGAT 57.905 45.000 0.00 0.00 44.10 2.75
23 24 1.529438 CAAGTTTAGGCGTTTGCGAGA 59.471 47.619 0.00 0.00 44.10 4.04
24 25 1.263217 ACAAGTTTAGGCGTTTGCGAG 59.737 47.619 0.00 0.00 44.10 5.03
25 26 1.262151 GACAAGTTTAGGCGTTTGCGA 59.738 47.619 0.00 0.00 44.10 5.10
26 27 1.003331 TGACAAGTTTAGGCGTTTGCG 60.003 47.619 0.00 0.00 44.10 4.85
27 28 2.766970 TGACAAGTTTAGGCGTTTGC 57.233 45.000 0.00 0.00 41.71 3.68
28 29 2.979813 GCATGACAAGTTTAGGCGTTTG 59.020 45.455 0.00 0.00 0.00 2.93
29 30 2.030274 GGCATGACAAGTTTAGGCGTTT 60.030 45.455 0.00 0.00 0.00 3.60
30 31 1.539827 GGCATGACAAGTTTAGGCGTT 59.460 47.619 0.00 0.00 0.00 4.84
31 32 1.165270 GGCATGACAAGTTTAGGCGT 58.835 50.000 0.00 0.00 0.00 5.68
32 33 1.164411 TGGCATGACAAGTTTAGGCG 58.836 50.000 0.00 0.00 0.00 5.52
33 34 2.736400 GCATGGCATGACAAGTTTAGGC 60.736 50.000 30.69 6.96 0.00 3.93
34 35 2.159198 GGCATGGCATGACAAGTTTAGG 60.159 50.000 30.69 0.00 38.49 2.69
35 36 3.155093 GGCATGGCATGACAAGTTTAG 57.845 47.619 30.69 0.44 38.49 1.85
43 44 2.493278 ACTTTAGTTGGCATGGCATGAC 59.507 45.455 30.69 28.66 39.32 3.06
44 45 2.806434 ACTTTAGTTGGCATGGCATGA 58.194 42.857 30.69 8.30 0.00 3.07
45 46 3.598019 AACTTTAGTTGGCATGGCATG 57.402 42.857 23.96 22.99 36.80 4.06
56 57 2.029380 GGCAAATCCCGCAACTTTAGTT 60.029 45.455 0.00 0.00 39.12 2.24
57 58 1.544246 GGCAAATCCCGCAACTTTAGT 59.456 47.619 0.00 0.00 0.00 2.24
58 59 1.467374 CGGCAAATCCCGCAACTTTAG 60.467 52.381 0.00 0.00 42.03 1.85
59 60 0.523966 CGGCAAATCCCGCAACTTTA 59.476 50.000 0.00 0.00 42.03 1.85
60 61 1.288752 CGGCAAATCCCGCAACTTT 59.711 52.632 0.00 0.00 42.03 2.66
61 62 2.961768 CGGCAAATCCCGCAACTT 59.038 55.556 0.00 0.00 42.03 2.66
77 78 2.254459 CAACTTCTGACTCCGATCACG 58.746 52.381 0.00 0.00 39.43 4.35
78 79 1.996191 GCAACTTCTGACTCCGATCAC 59.004 52.381 0.00 0.00 0.00 3.06
79 80 1.066858 GGCAACTTCTGACTCCGATCA 60.067 52.381 0.00 0.00 0.00 2.92
80 81 1.066858 TGGCAACTTCTGACTCCGATC 60.067 52.381 0.00 0.00 32.26 3.69
81 82 0.976641 TGGCAACTTCTGACTCCGAT 59.023 50.000 0.00 0.00 32.26 4.18
82 83 0.976641 ATGGCAACTTCTGACTCCGA 59.023 50.000 0.00 0.00 32.26 4.55
83 84 1.363744 GATGGCAACTTCTGACTCCG 58.636 55.000 0.00 0.00 37.74 4.63
84 85 1.003580 TGGATGGCAACTTCTGACTCC 59.996 52.381 0.00 0.00 40.47 3.85
85 86 2.079925 GTGGATGGCAACTTCTGACTC 58.920 52.381 0.00 0.00 40.47 3.36
86 87 1.271597 GGTGGATGGCAACTTCTGACT 60.272 52.381 0.00 0.00 40.47 3.41
87 88 1.168714 GGTGGATGGCAACTTCTGAC 58.831 55.000 0.00 0.00 40.47 3.51
88 89 0.770499 TGGTGGATGGCAACTTCTGA 59.230 50.000 0.00 0.00 40.47 3.27
89 90 1.475280 CATGGTGGATGGCAACTTCTG 59.525 52.381 0.00 0.00 40.47 3.02
90 91 1.355381 TCATGGTGGATGGCAACTTCT 59.645 47.619 0.00 0.00 40.47 2.85
91 92 1.838112 TCATGGTGGATGGCAACTTC 58.162 50.000 0.00 0.00 39.93 3.01
92 93 2.307496 TTCATGGTGGATGGCAACTT 57.693 45.000 0.00 0.00 32.26 2.66
93 94 2.307496 TTTCATGGTGGATGGCAACT 57.693 45.000 0.00 0.00 32.26 3.16
94 95 3.399440 TTTTTCATGGTGGATGGCAAC 57.601 42.857 0.00 0.00 32.26 4.17
113 114 4.754322 ACGTGTCAATTTTCTGCCTTTTT 58.246 34.783 0.00 0.00 0.00 1.94
114 115 4.385358 ACGTGTCAATTTTCTGCCTTTT 57.615 36.364 0.00 0.00 0.00 2.27
115 116 4.111916 CAACGTGTCAATTTTCTGCCTTT 58.888 39.130 0.00 0.00 0.00 3.11
116 117 3.130340 ACAACGTGTCAATTTTCTGCCTT 59.870 39.130 0.00 0.00 0.00 4.35
117 118 2.687935 ACAACGTGTCAATTTTCTGCCT 59.312 40.909 0.00 0.00 0.00 4.75
118 119 2.788786 CACAACGTGTCAATTTTCTGCC 59.211 45.455 0.00 0.00 0.00 4.85
119 120 2.216263 GCACAACGTGTCAATTTTCTGC 59.784 45.455 0.00 0.00 35.75 4.26
120 121 3.240401 GTGCACAACGTGTCAATTTTCTG 59.760 43.478 13.17 0.00 35.75 3.02
121 122 3.119673 TGTGCACAACGTGTCAATTTTCT 60.120 39.130 19.28 0.00 35.75 2.52
122 123 3.175152 TGTGCACAACGTGTCAATTTTC 58.825 40.909 19.28 0.00 35.75 2.29
123 124 3.119673 TCTGTGCACAACGTGTCAATTTT 60.120 39.130 21.98 0.00 35.75 1.82
124 125 2.421775 TCTGTGCACAACGTGTCAATTT 59.578 40.909 21.98 0.00 35.75 1.82
125 126 2.013400 TCTGTGCACAACGTGTCAATT 58.987 42.857 21.98 0.00 35.75 2.32
126 127 1.330521 GTCTGTGCACAACGTGTCAAT 59.669 47.619 21.98 0.00 35.75 2.57
127 128 0.724549 GTCTGTGCACAACGTGTCAA 59.275 50.000 21.98 0.00 35.75 3.18
128 129 0.390472 TGTCTGTGCACAACGTGTCA 60.390 50.000 21.98 10.09 35.75 3.58
129 130 0.724549 TTGTCTGTGCACAACGTGTC 59.275 50.000 21.98 7.50 35.75 3.67
130 131 1.160989 TTTGTCTGTGCACAACGTGT 58.839 45.000 21.98 0.00 35.97 4.49
131 132 2.473530 ATTTGTCTGTGCACAACGTG 57.526 45.000 21.98 9.32 35.97 4.49
132 133 2.796304 CAATTTGTCTGTGCACAACGT 58.204 42.857 21.98 9.17 35.97 3.99
133 134 1.518102 GCAATTTGTCTGTGCACAACG 59.482 47.619 21.98 10.51 35.97 4.10
134 135 1.860326 GGCAATTTGTCTGTGCACAAC 59.140 47.619 21.98 20.20 40.12 3.32
135 136 1.479730 TGGCAATTTGTCTGTGCACAA 59.520 42.857 21.98 5.72 40.12 3.33
136 137 1.109609 TGGCAATTTGTCTGTGCACA 58.890 45.000 20.37 20.37 40.12 4.57
137 138 2.331194 GATGGCAATTTGTCTGTGCAC 58.669 47.619 10.75 10.75 40.12 4.57
138 139 1.273048 GGATGGCAATTTGTCTGTGCA 59.727 47.619 2.24 0.00 40.12 4.57
139 140 1.273048 TGGATGGCAATTTGTCTGTGC 59.727 47.619 2.24 0.00 37.55 4.57
140 141 2.559668 ACTGGATGGCAATTTGTCTGTG 59.440 45.455 2.24 0.00 0.00 3.66
141 142 2.821969 GACTGGATGGCAATTTGTCTGT 59.178 45.455 2.24 0.00 0.00 3.41
142 143 2.159476 CGACTGGATGGCAATTTGTCTG 60.159 50.000 2.24 0.00 0.00 3.51
143 144 2.086869 CGACTGGATGGCAATTTGTCT 58.913 47.619 2.24 0.00 0.00 3.41
144 145 1.133025 CCGACTGGATGGCAATTTGTC 59.867 52.381 0.00 0.00 37.49 3.18
145 146 1.176527 CCGACTGGATGGCAATTTGT 58.823 50.000 0.00 0.00 37.49 2.83
146 147 1.133025 GACCGACTGGATGGCAATTTG 59.867 52.381 0.00 0.00 39.21 2.32
147 148 1.463674 GACCGACTGGATGGCAATTT 58.536 50.000 0.00 0.00 39.21 1.82
148 149 0.744414 CGACCGACTGGATGGCAATT 60.744 55.000 0.00 0.00 39.21 2.32
149 150 1.153369 CGACCGACTGGATGGCAAT 60.153 57.895 0.00 0.00 39.21 3.56
150 151 2.107041 AACGACCGACTGGATGGCAA 62.107 55.000 0.00 0.00 39.21 4.52
151 152 1.252215 TAACGACCGACTGGATGGCA 61.252 55.000 0.00 0.00 39.21 4.92
152 153 0.104304 ATAACGACCGACTGGATGGC 59.896 55.000 0.00 0.00 39.21 4.40
153 154 1.269621 GGATAACGACCGACTGGATGG 60.270 57.143 0.00 0.00 39.21 3.51
154 155 2.135664 GGATAACGACCGACTGGATG 57.864 55.000 0.00 0.00 39.21 3.51
166 167 1.571919 CTCAAAGCCCTCGGATAACG 58.428 55.000 0.00 0.00 46.11 3.18
167 168 1.475213 CCCTCAAAGCCCTCGGATAAC 60.475 57.143 0.00 0.00 0.00 1.89
168 169 0.837272 CCCTCAAAGCCCTCGGATAA 59.163 55.000 0.00 0.00 0.00 1.75
169 170 1.696097 GCCCTCAAAGCCCTCGGATA 61.696 60.000 0.00 0.00 0.00 2.59
170 171 3.049080 GCCCTCAAAGCCCTCGGAT 62.049 63.158 0.00 0.00 0.00 4.18
171 172 3.717294 GCCCTCAAAGCCCTCGGA 61.717 66.667 0.00 0.00 0.00 4.55
172 173 2.843912 AATGCCCTCAAAGCCCTCGG 62.844 60.000 0.00 0.00 0.00 4.63
173 174 1.379044 AATGCCCTCAAAGCCCTCG 60.379 57.895 0.00 0.00 0.00 4.63
174 175 1.379642 CGAATGCCCTCAAAGCCCTC 61.380 60.000 0.00 0.00 0.00 4.30
175 176 1.379044 CGAATGCCCTCAAAGCCCT 60.379 57.895 0.00 0.00 0.00 5.19
176 177 3.068729 GCGAATGCCCTCAAAGCCC 62.069 63.158 0.00 0.00 33.98 5.19
177 178 2.048603 AGCGAATGCCCTCAAAGCC 61.049 57.895 0.00 0.00 44.31 4.35
178 179 1.138247 CAGCGAATGCCCTCAAAGC 59.862 57.895 0.00 0.00 44.31 3.51
179 180 1.660560 CCCAGCGAATGCCCTCAAAG 61.661 60.000 0.00 0.00 44.31 2.77
180 181 1.678635 CCCAGCGAATGCCCTCAAA 60.679 57.895 0.00 0.00 44.31 2.69
181 182 2.045045 CCCAGCGAATGCCCTCAA 60.045 61.111 0.00 0.00 44.31 3.02
182 183 3.008517 TCCCAGCGAATGCCCTCA 61.009 61.111 0.00 0.00 44.31 3.86
183 184 2.203126 CTCCCAGCGAATGCCCTC 60.203 66.667 0.00 0.00 44.31 4.30
184 185 4.496336 GCTCCCAGCGAATGCCCT 62.496 66.667 0.00 0.00 44.31 5.19
186 187 2.680974 TATGGCTCCCAGCGAATGCC 62.681 60.000 0.00 0.00 43.62 4.40
187 188 0.819259 TTATGGCTCCCAGCGAATGC 60.819 55.000 0.00 0.00 43.62 3.56
188 189 1.679139 TTTATGGCTCCCAGCGAATG 58.321 50.000 0.00 0.00 43.62 2.67
189 190 2.435372 TTTTATGGCTCCCAGCGAAT 57.565 45.000 0.00 0.00 43.62 3.34
190 191 2.208132 TTTTTATGGCTCCCAGCGAA 57.792 45.000 0.00 0.00 43.62 4.70
191 192 2.023673 CATTTTTATGGCTCCCAGCGA 58.976 47.619 0.00 0.00 43.62 4.93
192 193 1.750778 ACATTTTTATGGCTCCCAGCG 59.249 47.619 0.00 0.00 43.62 5.18
193 194 2.760092 TCACATTTTTATGGCTCCCAGC 59.240 45.455 0.00 0.00 41.46 4.85
194 195 4.403432 ACATCACATTTTTATGGCTCCCAG 59.597 41.667 0.00 0.00 36.75 4.45
195 196 4.352009 ACATCACATTTTTATGGCTCCCA 58.648 39.130 0.00 0.00 38.19 4.37
196 197 4.202151 GGACATCACATTTTTATGGCTCCC 60.202 45.833 0.00 0.00 0.00 4.30
197 198 4.202151 GGGACATCACATTTTTATGGCTCC 60.202 45.833 0.00 0.00 0.00 4.70
198 199 4.202151 GGGGACATCACATTTTTATGGCTC 60.202 45.833 0.00 0.00 0.00 4.70
199 200 3.706086 GGGGACATCACATTTTTATGGCT 59.294 43.478 0.00 0.00 0.00 4.75
200 201 3.490761 CGGGGACATCACATTTTTATGGC 60.491 47.826 0.00 0.00 0.00 4.40
201 202 3.068024 CCGGGGACATCACATTTTTATGG 59.932 47.826 0.00 0.00 0.00 2.74
202 203 3.068024 CCCGGGGACATCACATTTTTATG 59.932 47.826 14.71 0.00 0.00 1.90
203 204 3.295973 CCCGGGGACATCACATTTTTAT 58.704 45.455 14.71 0.00 0.00 1.40
204 205 2.621929 CCCCGGGGACATCACATTTTTA 60.622 50.000 38.41 0.00 37.50 1.52
205 206 1.555967 CCCGGGGACATCACATTTTT 58.444 50.000 14.71 0.00 0.00 1.94
206 207 0.324275 CCCCGGGGACATCACATTTT 60.324 55.000 38.41 0.00 37.50 1.82
207 208 1.211567 TCCCCGGGGACATCACATTT 61.212 55.000 39.67 0.00 39.76 2.32
208 209 1.211567 TTCCCCGGGGACATCACATT 61.212 55.000 42.89 0.00 45.11 2.71
209 210 0.993509 ATTCCCCGGGGACATCACAT 60.994 55.000 42.89 28.11 45.11 3.21
210 211 1.211567 AATTCCCCGGGGACATCACA 61.212 55.000 42.89 27.07 45.11 3.58
211 212 0.751643 CAATTCCCCGGGGACATCAC 60.752 60.000 42.89 0.00 45.11 3.06
212 213 1.612513 CAATTCCCCGGGGACATCA 59.387 57.895 42.89 28.32 45.11 3.07
213 214 1.152756 CCAATTCCCCGGGGACATC 60.153 63.158 42.89 0.00 45.11 3.06
214 215 1.933812 ACCAATTCCCCGGGGACAT 60.934 57.895 42.89 31.53 45.11 3.06
215 216 2.533232 ACCAATTCCCCGGGGACA 60.533 61.111 42.89 30.80 45.11 4.02
216 217 2.044352 CACCAATTCCCCGGGGAC 60.044 66.667 42.89 0.00 45.11 4.46
217 218 2.144859 GAACACCAATTCCCCGGGGA 62.145 60.000 39.67 39.67 43.52 4.81
218 219 1.680989 GAACACCAATTCCCCGGGG 60.681 63.158 35.80 35.80 0.00 5.73
219 220 2.043980 CGAACACCAATTCCCCGGG 61.044 63.158 15.80 15.80 0.00 5.73
220 221 0.606944 TTCGAACACCAATTCCCCGG 60.607 55.000 0.00 0.00 0.00 5.73
221 222 1.240256 TTTCGAACACCAATTCCCCG 58.760 50.000 0.00 0.00 0.00 5.73
222 223 3.953712 ATTTTCGAACACCAATTCCCC 57.046 42.857 0.00 0.00 0.00 4.81
223 224 6.364976 CAGTTTATTTTCGAACACCAATTCCC 59.635 38.462 0.00 0.00 0.00 3.97
224 225 6.128929 GCAGTTTATTTTCGAACACCAATTCC 60.129 38.462 0.00 0.00 0.00 3.01
225 226 6.419413 TGCAGTTTATTTTCGAACACCAATTC 59.581 34.615 0.00 0.00 0.00 2.17
226 227 6.200097 GTGCAGTTTATTTTCGAACACCAATT 59.800 34.615 0.00 0.00 0.00 2.32
227 228 5.689961 GTGCAGTTTATTTTCGAACACCAAT 59.310 36.000 0.00 0.00 0.00 3.16
228 229 5.038033 GTGCAGTTTATTTTCGAACACCAA 58.962 37.500 0.00 0.00 0.00 3.67
229 230 4.096532 TGTGCAGTTTATTTTCGAACACCA 59.903 37.500 0.00 0.00 0.00 4.17
230 231 4.602995 TGTGCAGTTTATTTTCGAACACC 58.397 39.130 0.00 0.00 0.00 4.16
231 232 5.270853 ACTGTGCAGTTTATTTTCGAACAC 58.729 37.500 0.00 0.00 38.83 3.32
232 233 5.493133 ACTGTGCAGTTTATTTTCGAACA 57.507 34.783 0.00 0.00 38.83 3.18
233 234 4.909880 GGACTGTGCAGTTTATTTTCGAAC 59.090 41.667 6.28 0.00 42.66 3.95
234 235 4.319190 CGGACTGTGCAGTTTATTTTCGAA 60.319 41.667 6.28 0.00 42.66 3.71
235 236 3.185594 CGGACTGTGCAGTTTATTTTCGA 59.814 43.478 6.28 0.00 42.66 3.71
236 237 3.185594 TCGGACTGTGCAGTTTATTTTCG 59.814 43.478 6.28 3.61 42.66 3.46
237 238 4.742438 TCGGACTGTGCAGTTTATTTTC 57.258 40.909 6.28 0.00 42.66 2.29
238 239 4.156008 GGATCGGACTGTGCAGTTTATTTT 59.844 41.667 6.28 0.00 42.66 1.82
239 240 3.689649 GGATCGGACTGTGCAGTTTATTT 59.310 43.478 6.28 0.00 42.66 1.40
240 241 3.270877 GGATCGGACTGTGCAGTTTATT 58.729 45.455 6.28 0.00 42.66 1.40
241 242 2.236146 TGGATCGGACTGTGCAGTTTAT 59.764 45.455 6.28 1.31 42.66 1.40
242 243 1.621317 TGGATCGGACTGTGCAGTTTA 59.379 47.619 6.28 0.00 42.66 2.01
243 244 0.396435 TGGATCGGACTGTGCAGTTT 59.604 50.000 6.28 0.00 42.66 2.66
244 245 0.396435 TTGGATCGGACTGTGCAGTT 59.604 50.000 6.28 0.00 42.66 3.16
245 246 0.396435 TTTGGATCGGACTGTGCAGT 59.604 50.000 4.31 4.31 45.84 4.40
246 247 1.742761 ATTTGGATCGGACTGTGCAG 58.257 50.000 0.00 0.00 0.00 4.41
247 248 2.198827 AATTTGGATCGGACTGTGCA 57.801 45.000 0.00 0.00 0.00 4.57
248 249 4.900635 ATTAATTTGGATCGGACTGTGC 57.099 40.909 0.00 0.00 0.00 4.57
249 250 7.757526 TGTTAATTAATTTGGATCGGACTGTG 58.242 34.615 5.91 0.00 0.00 3.66
250 251 7.931578 TGTTAATTAATTTGGATCGGACTGT 57.068 32.000 5.91 0.00 0.00 3.55
253 254 9.673454 GGTTATGTTAATTAATTTGGATCGGAC 57.327 33.333 5.91 0.00 0.00 4.79
254 255 9.635404 AGGTTATGTTAATTAATTTGGATCGGA 57.365 29.630 5.91 0.00 0.00 4.55
255 256 9.893305 GAGGTTATGTTAATTAATTTGGATCGG 57.107 33.333 5.91 0.00 0.00 4.18
320 321 0.035915 GCTTCTTCTGTGGAGGGGAC 60.036 60.000 0.00 0.00 0.00 4.46
338 339 8.091385 TGACAACTAACATATGATCATGATGC 57.909 34.615 18.72 5.60 0.00 3.91
407 408 2.163613 ACATGTGACGAGAGCGACAATA 59.836 45.455 0.00 0.00 43.12 1.90
487 498 1.079127 GATACTGTGTGCTGCCGGT 60.079 57.895 1.90 0.00 0.00 5.28
495 519 4.384846 ACGCGTAAAAAGAGATACTGTGTG 59.615 41.667 11.67 0.00 0.00 3.82
518 543 0.899019 TTGCGGTCTGGCATGTAGTA 59.101 50.000 0.00 0.00 43.52 1.82
519 544 0.673644 GTTGCGGTCTGGCATGTAGT 60.674 55.000 0.00 0.00 43.52 2.73
520 545 1.695893 CGTTGCGGTCTGGCATGTAG 61.696 60.000 0.00 0.00 43.52 2.74
553 591 7.807907 TCTTTGATCGTTTTTCTTTCCTATTGC 59.192 33.333 0.00 0.00 0.00 3.56
554 592 9.677567 TTCTTTGATCGTTTTTCTTTCCTATTG 57.322 29.630 0.00 0.00 0.00 1.90
568 607 1.728971 CTGCGCTCTTCTTTGATCGTT 59.271 47.619 9.73 0.00 0.00 3.85
574 613 2.485426 TGAATTCCTGCGCTCTTCTTTG 59.515 45.455 9.73 0.00 0.00 2.77
583 622 1.421485 CGTGAGTGAATTCCTGCGC 59.579 57.895 0.00 0.00 0.00 6.09
645 702 2.106683 GTACTTTGAGGCGCCGCAT 61.107 57.895 33.63 21.17 0.00 4.73
647 704 1.847890 TTTGTACTTTGAGGCGCCGC 61.848 55.000 24.58 24.58 0.00 6.53
697 756 0.447406 GCCAAAATTTTCCATGCCGC 59.553 50.000 0.00 0.00 0.00 6.53
698 757 1.733360 CAGCCAAAATTTTCCATGCCG 59.267 47.619 0.00 0.00 0.00 5.69
699 758 1.469703 GCAGCCAAAATTTTCCATGCC 59.530 47.619 15.15 3.58 0.00 4.40
702 761 2.354003 CCGAGCAGCCAAAATTTTCCAT 60.354 45.455 0.00 0.00 0.00 3.41
703 762 1.000731 CCGAGCAGCCAAAATTTTCCA 59.999 47.619 0.00 0.00 0.00 3.53
704 763 1.672737 CCCGAGCAGCCAAAATTTTCC 60.673 52.381 0.00 0.00 0.00 3.13
706 765 1.000843 GACCCGAGCAGCCAAAATTTT 59.999 47.619 0.00 0.00 0.00 1.82
819 885 3.083997 GCGGATGAGGGAGTGGGT 61.084 66.667 0.00 0.00 0.00 4.51
823 889 4.095400 AGGGGCGGATGAGGGAGT 62.095 66.667 0.00 0.00 0.00 3.85
933 1274 4.463879 CACGGCCTGCTCCTCCAG 62.464 72.222 0.00 0.00 0.00 3.86
934 1275 3.897681 TACACGGCCTGCTCCTCCA 62.898 63.158 0.00 0.00 0.00 3.86
935 1276 2.370647 GATACACGGCCTGCTCCTCC 62.371 65.000 0.00 0.00 0.00 4.30
936 1277 1.068250 GATACACGGCCTGCTCCTC 59.932 63.158 0.00 0.00 0.00 3.71
937 1278 2.786495 CGATACACGGCCTGCTCCT 61.786 63.158 0.00 0.00 38.46 3.69
938 1279 2.279517 CGATACACGGCCTGCTCC 60.280 66.667 0.00 0.00 38.46 4.70
998 1371 1.381191 TCGTAGCTGGGAGCCATCA 60.381 57.895 0.00 0.00 43.77 3.07
1143 1528 4.070552 GACGGCAGCGGGAACTCT 62.071 66.667 4.79 0.00 0.00 3.24
1323 1738 2.752238 AGAGGCGAGACGGACAGG 60.752 66.667 0.00 0.00 0.00 4.00
1326 1745 0.248702 GAATCAGAGGCGAGACGGAC 60.249 60.000 0.00 0.00 0.00 4.79
1348 1775 1.015085 TAACATCAACGCGAACGGGG 61.015 55.000 15.93 0.00 46.04 5.73
1392 1836 3.719699 GCCAAAGCCGTAGTACGTA 57.280 52.632 20.60 0.00 40.58 3.57
1467 1911 4.077822 CGTATCTCCTCCTTACCGGTATT 58.922 47.826 16.67 0.00 0.00 1.89
1477 1921 0.106116 GGGTGGACGTATCTCCTCCT 60.106 60.000 10.80 0.00 41.85 3.69
1478 1922 0.106116 AGGGTGGACGTATCTCCTCC 60.106 60.000 4.02 4.02 41.55 4.30
1479 1923 2.653234 TAGGGTGGACGTATCTCCTC 57.347 55.000 3.69 0.00 0.00 3.71
1529 1999 0.109458 CGAGGTTCACGTGAATCGGA 60.109 55.000 31.97 13.34 44.69 4.55
1531 2001 1.385743 GAACGAGGTTCACGTGAATCG 59.614 52.381 35.11 35.11 43.16 3.34
1538 2008 0.925466 AAACACGAACGAGGTTCACG 59.075 50.000 8.97 0.00 42.05 4.35
1549 2019 0.759959 TGCCCTCCTGTAAACACGAA 59.240 50.000 0.00 0.00 0.00 3.85
1582 2052 2.187946 GCCACCGATAGCAGCTGT 59.812 61.111 16.64 0.00 0.00 4.40
1600 2070 1.311859 TGGCAGCAAGAGACAAACAG 58.688 50.000 0.00 0.00 0.00 3.16
1603 2073 2.346766 TCTTGGCAGCAAGAGACAAA 57.653 45.000 1.70 0.00 36.39 2.83
1633 2103 1.826024 GATGGACTGAGGCACGGAT 59.174 57.895 0.00 0.00 0.00 4.18
1712 2297 4.806247 CGGAGGTCAATACAAGATCTTCAC 59.194 45.833 4.57 0.00 0.00 3.18
1726 2311 1.300620 CGAACAGTGCGGAGGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
1982 2591 2.948315 TCTCTGACAGAGATCGATGTGG 59.052 50.000 27.75 3.14 45.77 4.17
2011 2630 6.200097 ACAATGTTAGATTTTGTTGAAACGGC 59.800 34.615 0.00 0.00 29.60 5.68
2014 2633 8.641499 TCCACAATGTTAGATTTTGTTGAAAC 57.359 30.769 0.00 0.00 31.48 2.78
2018 2637 7.304735 TCGATCCACAATGTTAGATTTTGTTG 58.695 34.615 0.00 0.00 31.48 3.33
2019 2638 7.447374 TCGATCCACAATGTTAGATTTTGTT 57.553 32.000 0.00 0.00 31.48 2.83
2020 2639 7.630242 ATCGATCCACAATGTTAGATTTTGT 57.370 32.000 0.00 0.00 34.03 2.83
2021 2640 8.183536 TGAATCGATCCACAATGTTAGATTTTG 58.816 33.333 0.00 0.00 0.00 2.44
2043 2666 0.740868 CGTCCCTGTCATGCGTGAAT 60.741 55.000 10.93 0.00 35.80 2.57
2273 3431 0.681733 ACAGGAACGACTGCAGTGAT 59.318 50.000 27.27 9.10 42.21 3.06
2277 3435 0.737715 GGCTACAGGAACGACTGCAG 60.738 60.000 13.48 13.48 42.21 4.41
2419 4154 2.484062 GCCGGTGGCCTGAATCATG 61.484 63.158 3.32 0.00 44.06 3.07
2683 4431 2.291043 CCGGTAGGGTTGTGGAGCT 61.291 63.158 0.00 0.00 0.00 4.09
2742 4493 4.704833 ATGGGCGCGCACAGAAGT 62.705 61.111 40.65 22.64 30.39 3.01
2767 4518 2.820767 CTTGCCCACCGAGAGACGAC 62.821 65.000 0.00 0.00 45.77 4.34
2768 4519 2.599281 TTGCCCACCGAGAGACGA 60.599 61.111 0.00 0.00 45.77 4.20
2769 4520 2.125912 CTTGCCCACCGAGAGACG 60.126 66.667 0.00 0.00 42.18 4.18
2883 4642 1.363744 CATGGACGTCTTTGCTCTCC 58.636 55.000 16.46 0.00 0.00 3.71
2917 4676 0.035458 CTTCAGAACCTTGCCCGTCT 59.965 55.000 0.00 0.00 0.00 4.18
2925 4684 8.196378 ACTAGTAATTCAGACTTCAGAACCTT 57.804 34.615 0.00 0.00 0.00 3.50
2929 4688 8.521176 GTGGTACTAGTAATTCAGACTTCAGAA 58.479 37.037 3.61 0.00 0.00 3.02
3030 4795 1.287730 GCGTCCCATCTCATCGCATC 61.288 60.000 0.00 0.00 45.01 3.91
3031 4796 1.301244 GCGTCCCATCTCATCGCAT 60.301 57.895 0.00 0.00 45.01 4.73
3032 4797 2.106938 GCGTCCCATCTCATCGCA 59.893 61.111 0.00 0.00 45.01 5.10
3033 4798 2.663188 GGCGTCCCATCTCATCGC 60.663 66.667 0.00 0.00 44.95 4.58
3034 4799 2.029666 GGGCGTCCCATCTCATCG 59.970 66.667 9.72 0.00 44.65 3.84
3105 4870 0.673644 GCGGCCAAAACAGAGCTAGA 60.674 55.000 2.24 0.00 0.00 2.43
3224 4989 5.929697 TCTCAATCATGCCATCGTTATTC 57.070 39.130 0.00 0.00 0.00 1.75
3230 4995 2.774687 TGGATCTCAATCATGCCATCG 58.225 47.619 0.00 0.00 33.21 3.84
3274 5039 8.865001 TGTCTTTCTTTTGTTTTCATTTTACCG 58.135 29.630 0.00 0.00 0.00 4.02
3279 5044 9.891828 GGTTTTGTCTTTCTTTTGTTTTCATTT 57.108 25.926 0.00 0.00 0.00 2.32
3280 5045 8.511321 GGGTTTTGTCTTTCTTTTGTTTTCATT 58.489 29.630 0.00 0.00 0.00 2.57
3282 5047 6.992715 TGGGTTTTGTCTTTCTTTTGTTTTCA 59.007 30.769 0.00 0.00 0.00 2.69
3283 5048 7.428282 TGGGTTTTGTCTTTCTTTTGTTTTC 57.572 32.000 0.00 0.00 0.00 2.29
3336 5101 5.192927 TGATGTTGATAGTTCATGAACCCC 58.807 41.667 30.34 20.67 42.06 4.95
3416 5181 6.263842 ACTGGTCAAACATTATATGATGGCAG 59.736 38.462 11.76 1.74 30.73 4.85
3539 5304 3.350219 TTAGGCAGATTCTCAACACCC 57.650 47.619 0.00 0.00 0.00 4.61
3558 5323 7.384477 ACACTCTAGCTAACCTAATTTCGTTT 58.616 34.615 0.00 0.00 0.00 3.60
3617 5382 3.435105 TTTATAGCTGCAATTTGGCGG 57.565 42.857 1.02 0.00 43.14 6.13
3618 5383 5.042593 TCATTTTATAGCTGCAATTTGGCG 58.957 37.500 1.02 0.00 36.28 5.69
3631 5396 8.087136 TGAGATCTAGCTGCACTCATTTTATAG 58.913 37.037 1.02 0.00 33.57 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.