Multiple sequence alignment - TraesCS5A01G246700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G246700 chr5A 100.000 4344 0 0 994 5337 460520083 460515740 0.000000e+00 8022
1 TraesCS5A01G246700 chr5A 100.000 676 0 0 1 676 460521076 460520401 0.000000e+00 1249
2 TraesCS5A01G246700 chr5A 81.053 380 54 12 4973 5337 54458814 54458438 2.430000e-73 287
3 TraesCS5A01G246700 chr5D 94.845 3802 137 32 1010 4783 358995131 358998901 0.000000e+00 5880
4 TraesCS5A01G246700 chr5D 81.871 695 46 32 12 662 358994066 358994724 3.690000e-141 512
5 TraesCS5A01G246700 chr5D 82.199 382 51 11 4973 5337 520768121 520768502 4.010000e-81 313
6 TraesCS5A01G246700 chr5B 92.658 3936 147 56 994 4896 424332554 424336380 0.000000e+00 5537
7 TraesCS5A01G246700 chr5B 80.959 688 55 34 22 662 424331257 424331915 4.840000e-130 475
8 TraesCS5A01G246700 chr5B 81.674 442 58 9 1252 1678 100019951 100020384 3.960000e-91 346
9 TraesCS5A01G246700 chr2D 81.996 511 71 12 1252 1751 473053796 473053296 1.070000e-111 414
10 TraesCS5A01G246700 chr3D 82.039 412 54 13 4944 5337 591097515 591097924 3.080000e-87 333
11 TraesCS5A01G246700 chr7A 85.574 305 42 2 1449 1751 548045233 548044929 8.630000e-83 318
12 TraesCS5A01G246700 chr7A 93.548 93 6 0 1389 1481 611768724 611768816 7.210000e-29 139
13 TraesCS5A01G246700 chr1D 85.085 295 43 1 1458 1751 454449755 454450049 3.120000e-77 300
14 TraesCS5A01G246700 chr7D 81.102 381 55 13 4972 5337 454676863 454676485 6.760000e-74 289
15 TraesCS5A01G246700 chr7D 92.708 96 7 0 1389 1484 580166555 580166460 7.210000e-29 139
16 TraesCS5A01G246700 chr7D 92.473 93 7 0 1389 1481 511057898 511057990 3.350000e-27 134
17 TraesCS5A01G246700 chr3B 78.947 361 59 14 4983 5329 685065738 685066095 4.160000e-56 230
18 TraesCS5A01G246700 chr3B 83.203 256 35 8 5089 5337 480333522 480333268 1.500000e-55 228
19 TraesCS5A01G246700 chr3B 82.264 265 38 9 5081 5337 146288703 146288440 2.500000e-53 220
20 TraesCS5A01G246700 chr1A 83.268 257 35 8 5070 5319 555823910 555823655 4.160000e-56 230
21 TraesCS5A01G246700 chr6B 78.151 357 60 14 4981 5320 671726870 671727225 1.510000e-50 211
22 TraesCS5A01G246700 chr1B 93.548 93 6 0 1389 1481 93951291 93951383 7.210000e-29 139
23 TraesCS5A01G246700 chr2A 92.473 93 7 0 1389 1481 115431366 115431458 3.350000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G246700 chr5A 460515740 460521076 5336 True 4635.5 8022 100.0000 1 5337 2 chr5A.!!$R2 5336
1 TraesCS5A01G246700 chr5D 358994066 358998901 4835 False 3196.0 5880 88.3580 12 4783 2 chr5D.!!$F2 4771
2 TraesCS5A01G246700 chr5B 424331257 424336380 5123 False 3006.0 5537 86.8085 22 4896 2 chr5B.!!$F2 4874
3 TraesCS5A01G246700 chr2D 473053296 473053796 500 True 414.0 414 81.9960 1252 1751 1 chr2D.!!$R1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 335 0.666577 CGAGAGTTCCACCGTTCCAC 60.667 60.000 0.00 0.00 0.00 4.02 F
644 735 1.600916 GAGTCCAACAAAGGCGGCT 60.601 57.895 5.25 5.25 0.00 5.52 F
1133 1530 2.372172 AGAAGAAAAAGAAGCCCTCCGA 59.628 45.455 0.00 0.00 0.00 4.55 F
2133 2549 2.563620 TGTACAAGTCGGTTGGATAGCA 59.436 45.455 0.00 0.00 40.90 3.49 F
2192 2609 0.253044 TGTGTATGCTCCTCTTGCCC 59.747 55.000 0.00 0.00 0.00 5.36 F
3158 3585 0.458669 ATGCAATGCAGTAAGCCAGC 59.541 50.000 14.98 0.00 43.65 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 2198 0.336737 ACCCCCAGGAACACAACAAA 59.663 50.000 0.00 0.0 36.73 2.83 R
1785 2200 0.475044 GTACCCCCAGGAACACAACA 59.525 55.000 0.00 0.0 36.73 3.33 R
2180 2597 0.952984 GCATATCGGGCAAGAGGAGC 60.953 60.000 0.00 0.0 0.00 4.70 R
3788 4226 0.252193 AGACAGCTTCCAGAGAGCCT 60.252 55.000 0.00 0.0 41.03 4.58 R
4022 4460 2.094675 CACCCATGGATGACCTGAAAC 58.905 52.381 15.22 0.0 37.04 2.78 R
4944 5386 0.105453 CCTAGCTAGCCAAGGGAGGA 60.105 60.000 21.12 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 2.380410 CGCACGGTGCTTACCAGAC 61.380 63.158 28.42 0.00 42.25 3.51
108 109 2.432456 TGCTTACCAGACGCAGCG 60.432 61.111 14.82 14.82 34.82 5.18
115 116 2.807045 CAGACGCAGCGACAGTCC 60.807 66.667 24.65 3.01 35.65 3.85
125 126 1.084370 GCGACAGTCCCATACACTGC 61.084 60.000 0.00 0.00 44.50 4.40
184 198 1.487482 CAGAACACGAAACGAGCAGA 58.513 50.000 0.00 0.00 0.00 4.26
232 272 1.134220 GTAATGAGCCCGGATCCAACA 60.134 52.381 13.41 4.30 0.00 3.33
237 277 1.224592 GCCCGGATCCAACACAGAT 59.775 57.895 13.41 0.00 0.00 2.90
239 279 1.810412 GCCCGGATCCAACACAGATAC 60.810 57.143 13.41 0.00 0.00 2.24
279 333 1.664306 ACGAGAGTTCCACCGTTCC 59.336 57.895 0.00 0.00 46.40 3.62
280 334 1.111116 ACGAGAGTTCCACCGTTCCA 61.111 55.000 0.00 0.00 46.40 3.53
281 335 0.666577 CGAGAGTTCCACCGTTCCAC 60.667 60.000 0.00 0.00 0.00 4.02
282 336 0.666577 GAGAGTTCCACCGTTCCACG 60.667 60.000 0.00 0.00 42.11 4.94
283 337 2.280592 AGTTCCACCGTTCCACGC 60.281 61.111 0.00 0.00 40.91 5.34
284 338 3.351416 GTTCCACCGTTCCACGCC 61.351 66.667 0.00 0.00 40.91 5.68
285 339 3.862991 TTCCACCGTTCCACGCCA 61.863 61.111 0.00 0.00 40.91 5.69
286 340 4.612412 TCCACCGTTCCACGCCAC 62.612 66.667 0.00 0.00 40.91 5.01
315 383 3.057456 CCGTATCCGTATCCTTCCAGAAG 60.057 52.174 0.15 0.15 38.14 2.85
322 390 1.977293 ATCCTTCCAGAAGCCTCCGC 61.977 60.000 1.68 0.00 37.11 5.54
383 458 2.441901 GGGCATCAAATCGGGGCA 60.442 61.111 0.00 0.00 0.00 5.36
448 523 3.861263 GTCGCGTGATTTCCCCGC 61.861 66.667 5.77 0.00 43.74 6.13
451 526 2.435938 GCGTGATTTCCCCGCAGA 60.436 61.111 0.00 0.00 46.26 4.26
452 527 2.750888 GCGTGATTTCCCCGCAGAC 61.751 63.158 0.00 0.00 46.26 3.51
513 600 4.747529 GTACGCGTCCACCCACCC 62.748 72.222 18.63 0.00 0.00 4.61
544 631 3.047877 CGAACCGTGCCCCTTGTC 61.048 66.667 0.00 0.00 0.00 3.18
545 632 2.430367 GAACCGTGCCCCTTGTCT 59.570 61.111 0.00 0.00 0.00 3.41
549 636 2.266055 CGTGCCCCTTGTCTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
551 638 2.610859 TGCCCCTTGTCTCCTCCC 60.611 66.667 0.00 0.00 0.00 4.30
553 640 2.692741 CCCCTTGTCTCCTCCCCC 60.693 72.222 0.00 0.00 0.00 5.40
644 735 1.600916 GAGTCCAACAAAGGCGGCT 60.601 57.895 5.25 5.25 0.00 5.52
1133 1530 2.372172 AGAAGAAAAAGAAGCCCTCCGA 59.628 45.455 0.00 0.00 0.00 4.55
1756 2171 8.120465 ACGGTAAATTCTTGCTAATATTTCACG 58.880 33.333 0.00 0.00 0.00 4.35
1909 2325 3.924114 TCCGACATTGGACCATACAAT 57.076 42.857 0.00 0.00 39.00 2.71
1960 2376 8.790718 AGTATGATGTCATGGCATTTAGAATTC 58.209 33.333 15.22 0.00 37.15 2.17
1983 2399 6.946340 TCATGGTTGTACATAGTTGATCTGT 58.054 36.000 0.00 0.00 0.00 3.41
2009 2425 5.305139 ACGAGTAATTTGCCATGTTAACC 57.695 39.130 2.48 0.00 0.00 2.85
2011 2427 4.093703 CGAGTAATTTGCCATGTTAACCGA 59.906 41.667 2.48 0.00 0.00 4.69
2017 2433 5.968528 TTTGCCATGTTAACCGAATTACT 57.031 34.783 2.48 0.00 0.00 2.24
2039 2455 2.607038 GCGGGTTTCAGGTTTCAATCAC 60.607 50.000 0.00 0.00 0.00 3.06
2040 2456 2.884639 CGGGTTTCAGGTTTCAATCACT 59.115 45.455 0.00 0.00 0.00 3.41
2041 2457 3.317993 CGGGTTTCAGGTTTCAATCACTT 59.682 43.478 0.00 0.00 0.00 3.16
2054 2470 6.831727 TTCAATCACTTCACAGCATTTTTG 57.168 33.333 0.00 0.00 0.00 2.44
2067 2483 3.258872 AGCATTTTTGCAGGTTGCTCATA 59.741 39.130 9.01 0.00 45.31 2.15
2100 2516 9.610705 ACCATGCATATCATCTAATCTAATGTC 57.389 33.333 0.00 0.00 31.79 3.06
2122 2538 6.916387 TGTCTTCTAAACTTCTGTACAAGTCG 59.084 38.462 0.74 0.00 35.45 4.18
2133 2549 2.563620 TGTACAAGTCGGTTGGATAGCA 59.436 45.455 0.00 0.00 40.90 3.49
2135 2551 2.906354 ACAAGTCGGTTGGATAGCATC 58.094 47.619 3.87 0.00 40.90 3.91
2150 2566 6.630444 GATAGCATCCAATTTGTGAGTCAT 57.370 37.500 0.00 0.00 0.00 3.06
2151 2567 4.713824 AGCATCCAATTTGTGAGTCATG 57.286 40.909 0.00 0.00 0.00 3.07
2166 2583 5.352569 GTGAGTCATGAGTTGGTAGGAAATG 59.647 44.000 4.13 0.00 0.00 2.32
2178 2595 8.325787 AGTTGGTAGGAAATGTATTCATGTGTA 58.674 33.333 0.00 0.00 34.19 2.90
2180 2597 8.675705 TGGTAGGAAATGTATTCATGTGTATG 57.324 34.615 0.00 0.00 34.19 2.39
2192 2609 0.253044 TGTGTATGCTCCTCTTGCCC 59.747 55.000 0.00 0.00 0.00 5.36
2209 2626 4.623932 TGCCCGATATGCTTAGAGAATT 57.376 40.909 0.00 0.00 0.00 2.17
2227 2646 4.713321 AGAATTGGGGATTTGAATGGAGTG 59.287 41.667 0.00 0.00 0.00 3.51
2250 2672 4.148825 GTCGAGCGCCCATCTGGT 62.149 66.667 2.29 0.00 36.04 4.00
2258 2680 1.618837 GCGCCCATCTGGTATCTCTTA 59.381 52.381 0.00 0.00 36.04 2.10
2268 2690 6.737720 TCTGGTATCTCTTAGTGCATTCAT 57.262 37.500 0.00 0.00 0.00 2.57
2364 2786 7.302350 TCATGTTTCATACTTACACAATCGG 57.698 36.000 0.00 0.00 0.00 4.18
2427 2849 7.773224 TGATGGTTGTGTAACTAATAAGATGGG 59.227 37.037 0.00 0.00 38.04 4.00
2499 2921 4.072131 GAGCTGGAAGTGGTGAATGTTTA 58.928 43.478 0.00 0.00 35.30 2.01
2652 3074 2.513753 TGTGGTGCCTTCATTGGTAAG 58.486 47.619 0.00 0.00 0.00 2.34
2654 3076 2.890945 GTGGTGCCTTCATTGGTAAGTT 59.109 45.455 0.00 0.00 0.00 2.66
2655 3077 3.057526 GTGGTGCCTTCATTGGTAAGTTC 60.058 47.826 0.00 0.00 0.00 3.01
2706 3131 4.875544 TGCGCTAATTGATAGTTGGTTC 57.124 40.909 9.73 0.00 33.87 3.62
2724 3149 2.488153 GTTCCATTCTACTTGTGGTGGC 59.512 50.000 0.00 0.00 34.61 5.01
2882 3307 5.234466 AGTCTTCTTGAGCATACCAAACT 57.766 39.130 0.00 0.00 0.00 2.66
2944 3369 6.484288 TGATGAATTAGGAAGTGGTGTGATT 58.516 36.000 0.00 0.00 0.00 2.57
3157 3584 2.953466 AATGCAATGCAGTAAGCCAG 57.047 45.000 14.98 0.00 43.65 4.85
3158 3585 0.458669 ATGCAATGCAGTAAGCCAGC 59.541 50.000 14.98 0.00 43.65 4.85
3162 3594 1.135199 CAATGCAGTAAGCCAGCCTTG 60.135 52.381 0.00 0.00 44.83 3.61
3185 3617 9.583765 CTTGGTACTTCTTATTAGACACTTACC 57.416 37.037 0.00 0.00 0.00 2.85
3312 3748 4.268359 GTGGAGCAGAATGAGAGGAATTT 58.732 43.478 0.00 0.00 39.69 1.82
3341 3777 4.053469 TGAACATTGAGTGACGAACAGA 57.947 40.909 0.00 0.00 0.00 3.41
3357 3793 5.235186 ACGAACAGATTATCTAATGCTGCAC 59.765 40.000 3.57 0.00 30.73 4.57
3368 3804 2.189594 ATGCTGCACTGCTCTAAACA 57.810 45.000 3.57 0.00 0.00 2.83
3524 3960 9.705471 TTTTGTTTAGTCTGTTATGTTTGTACG 57.295 29.630 0.00 0.00 0.00 3.67
3533 3969 8.280497 GTCTGTTATGTTTGTACGATTGACTTT 58.720 33.333 0.00 0.00 0.00 2.66
3585 4022 6.902408 TCTTTCTAGGGTTTTACTTGGACAA 58.098 36.000 0.00 0.00 0.00 3.18
3788 4226 4.177537 TGGTTCACTTCCATTTCAAGGA 57.822 40.909 0.00 0.00 0.00 3.36
3870 4308 5.192927 GTCCATGGGAATCAATGTCAGTTA 58.807 41.667 13.02 0.00 31.38 2.24
4082 4520 1.065854 CCCTGAAGGCTGTAACTCCTG 60.066 57.143 0.00 0.00 32.00 3.86
4453 4891 0.887836 CCTGTCAGAGCAAGCAAGCA 60.888 55.000 0.00 0.00 36.85 3.91
4589 5029 9.323985 AGAGTTGAGAATAATTTCAGTCTATGC 57.676 33.333 0.00 0.00 34.08 3.14
4598 5038 6.422776 AATTTCAGTCTATGCTGGTAAACG 57.577 37.500 0.00 0.00 37.12 3.60
4607 5047 1.202545 TGCTGGTAAACGTAGTGTGCA 60.203 47.619 0.00 0.00 45.00 4.57
4652 5092 4.489737 TGTTTCTTCCTGTTCCTCCTAGA 58.510 43.478 0.00 0.00 0.00 2.43
4661 5101 4.586841 CCTGTTCCTCCTAGACTATTGAGG 59.413 50.000 16.79 16.79 44.69 3.86
4677 5117 9.890352 GACTATTGAGGATTAGATTTTTGCATC 57.110 33.333 0.00 0.00 0.00 3.91
4691 5132 3.872511 TTGCATCGATTTCCTGCATTT 57.127 38.095 11.14 0.00 44.65 2.32
4695 5136 4.579753 TGCATCGATTTCCTGCATTTGATA 59.420 37.500 6.54 0.00 40.75 2.15
4698 5139 7.040548 TGCATCGATTTCCTGCATTTGATATTA 60.041 33.333 6.54 0.00 40.75 0.98
4699 5140 7.972277 GCATCGATTTCCTGCATTTGATATTAT 59.028 33.333 0.00 0.00 35.96 1.28
4700 5141 9.850628 CATCGATTTCCTGCATTTGATATTATT 57.149 29.630 0.00 0.00 0.00 1.40
4773 5215 9.834628 GCTGTACTCTTAATCTGATATACTGAC 57.165 37.037 0.00 0.00 0.00 3.51
4825 5267 6.431722 ACAATATGGTAAATGCTAAGGTGGT 58.568 36.000 0.00 0.00 0.00 4.16
4910 5352 9.871238 ATATAGTGTGTAGATTTCTTGAAACGT 57.129 29.630 0.00 0.00 0.00 3.99
4911 5353 6.526566 AGTGTGTAGATTTCTTGAAACGTC 57.473 37.500 0.00 0.00 0.00 4.34
4912 5354 6.046593 AGTGTGTAGATTTCTTGAAACGTCA 58.953 36.000 0.00 0.00 0.00 4.35
4913 5355 6.537301 AGTGTGTAGATTTCTTGAAACGTCAA 59.463 34.615 0.00 0.00 41.57 3.18
4914 5356 7.065324 AGTGTGTAGATTTCTTGAAACGTCAAA 59.935 33.333 0.00 0.00 43.18 2.69
4915 5357 7.855904 GTGTGTAGATTTCTTGAAACGTCAAAT 59.144 33.333 0.00 0.00 43.18 2.32
4916 5358 8.402472 TGTGTAGATTTCTTGAAACGTCAAATT 58.598 29.630 0.00 0.00 43.18 1.82
4917 5359 9.233232 GTGTAGATTTCTTGAAACGTCAAATTT 57.767 29.630 0.00 0.00 43.18 1.82
4918 5360 9.232082 TGTAGATTTCTTGAAACGTCAAATTTG 57.768 29.630 12.15 12.15 43.18 2.32
4919 5361 7.698836 AGATTTCTTGAAACGTCAAATTTGG 57.301 32.000 17.90 5.67 43.18 3.28
4920 5362 7.488322 AGATTTCTTGAAACGTCAAATTTGGA 58.512 30.769 17.90 2.56 43.18 3.53
4921 5363 7.978975 AGATTTCTTGAAACGTCAAATTTGGAA 59.021 29.630 17.90 7.36 43.18 3.53
4922 5364 7.891183 TTTCTTGAAACGTCAAATTTGGAAA 57.109 28.000 17.90 12.33 43.18 3.13
4923 5365 6.879188 TCTTGAAACGTCAAATTTGGAAAC 57.121 33.333 17.90 8.21 43.18 2.78
4924 5366 5.808030 TCTTGAAACGTCAAATTTGGAAACC 59.192 36.000 17.90 4.77 43.18 3.27
4925 5367 5.331876 TGAAACGTCAAATTTGGAAACCT 57.668 34.783 17.90 0.00 0.00 3.50
4926 5368 5.725362 TGAAACGTCAAATTTGGAAACCTT 58.275 33.333 17.90 4.69 0.00 3.50
4927 5369 5.578727 TGAAACGTCAAATTTGGAAACCTTG 59.421 36.000 17.90 0.43 0.00 3.61
4928 5370 4.993029 ACGTCAAATTTGGAAACCTTGA 57.007 36.364 17.90 0.00 0.00 3.02
4929 5371 4.678622 ACGTCAAATTTGGAAACCTTGAC 58.321 39.130 17.90 13.85 38.94 3.18
4930 5372 4.048504 CGTCAAATTTGGAAACCTTGACC 58.951 43.478 17.90 0.00 39.03 4.02
4931 5373 4.440802 CGTCAAATTTGGAAACCTTGACCA 60.441 41.667 17.90 0.00 39.03 4.02
4932 5374 5.049828 GTCAAATTTGGAAACCTTGACCAG 58.950 41.667 17.90 0.00 37.72 4.00
4947 5389 5.688807 CTTGACCAGGATATGTCAATTCCT 58.311 41.667 5.63 1.90 46.89 3.36
4948 5390 5.296151 TGACCAGGATATGTCAATTCCTC 57.704 43.478 0.00 0.00 37.80 3.71
4949 5391 4.103153 TGACCAGGATATGTCAATTCCTCC 59.897 45.833 0.00 0.00 37.80 4.30
4950 5392 3.395941 ACCAGGATATGTCAATTCCTCCC 59.604 47.826 0.00 0.00 37.80 4.30
4951 5393 3.654806 CCAGGATATGTCAATTCCTCCCT 59.345 47.826 4.36 0.00 37.80 4.20
4952 5394 4.105377 CCAGGATATGTCAATTCCTCCCTT 59.895 45.833 4.36 0.00 37.80 3.95
4953 5395 5.068636 CAGGATATGTCAATTCCTCCCTTG 58.931 45.833 4.36 0.00 37.80 3.61
4954 5396 4.105377 AGGATATGTCAATTCCTCCCTTGG 59.895 45.833 1.90 0.00 34.80 3.61
4955 5397 2.149973 ATGTCAATTCCTCCCTTGGC 57.850 50.000 0.00 0.00 0.00 4.52
4956 5398 1.075601 TGTCAATTCCTCCCTTGGCT 58.924 50.000 0.00 0.00 0.00 4.75
4957 5399 2.274542 TGTCAATTCCTCCCTTGGCTA 58.725 47.619 0.00 0.00 0.00 3.93
4958 5400 2.239654 TGTCAATTCCTCCCTTGGCTAG 59.760 50.000 0.00 0.00 0.00 3.42
4959 5401 1.212935 TCAATTCCTCCCTTGGCTAGC 59.787 52.381 6.04 6.04 0.00 3.42
4960 5402 1.213926 CAATTCCTCCCTTGGCTAGCT 59.786 52.381 15.72 0.00 0.00 3.32
4961 5403 2.439507 CAATTCCTCCCTTGGCTAGCTA 59.560 50.000 15.72 5.44 0.00 3.32
4962 5404 1.794714 TTCCTCCCTTGGCTAGCTAG 58.205 55.000 16.84 16.84 0.00 3.42
4963 5405 0.105453 TCCTCCCTTGGCTAGCTAGG 60.105 60.000 22.10 22.19 0.00 3.02
4965 5407 4.401657 CCCTTGGCTAGCTAGGGT 57.598 61.111 31.36 0.00 43.07 4.34
4966 5408 2.621486 CCCTTGGCTAGCTAGGGTT 58.379 57.895 31.36 0.00 43.07 4.11
4967 5409 0.919710 CCCTTGGCTAGCTAGGGTTT 59.080 55.000 31.36 0.00 43.07 3.27
4968 5410 1.134068 CCCTTGGCTAGCTAGGGTTTC 60.134 57.143 31.36 10.74 43.07 2.78
4969 5411 1.840635 CCTTGGCTAGCTAGGGTTTCT 59.159 52.381 19.70 0.00 0.00 2.52
4970 5412 2.158885 CCTTGGCTAGCTAGGGTTTCTC 60.159 54.545 19.70 3.45 0.00 2.87
4971 5413 2.552093 TGGCTAGCTAGGGTTTCTCT 57.448 50.000 22.10 0.00 0.00 3.10
4972 5414 2.389715 TGGCTAGCTAGGGTTTCTCTC 58.610 52.381 22.10 2.00 0.00 3.20
4973 5415 1.338655 GGCTAGCTAGGGTTTCTCTCG 59.661 57.143 22.10 0.00 0.00 4.04
4974 5416 1.269361 GCTAGCTAGGGTTTCTCTCGC 60.269 57.143 22.10 0.11 0.00 5.03
4975 5417 1.338655 CTAGCTAGGGTTTCTCTCGCC 59.661 57.143 13.32 0.00 0.00 5.54
4976 5418 1.227002 GCTAGGGTTTCTCTCGCCG 60.227 63.158 0.00 0.00 0.00 6.46
4977 5419 1.227002 CTAGGGTTTCTCTCGCCGC 60.227 63.158 0.00 0.00 0.00 6.53
4978 5420 2.630592 CTAGGGTTTCTCTCGCCGCC 62.631 65.000 0.00 0.00 0.00 6.13
4979 5421 4.388499 GGGTTTCTCTCGCCGCCA 62.388 66.667 0.00 0.00 0.00 5.69
4980 5422 2.125106 GGTTTCTCTCGCCGCCAT 60.125 61.111 0.00 0.00 0.00 4.40
4981 5423 2.174319 GGTTTCTCTCGCCGCCATC 61.174 63.158 0.00 0.00 0.00 3.51
4982 5424 1.153549 GTTTCTCTCGCCGCCATCT 60.154 57.895 0.00 0.00 0.00 2.90
4983 5425 1.153568 TTTCTCTCGCCGCCATCTG 60.154 57.895 0.00 0.00 0.00 2.90
4984 5426 1.604147 TTTCTCTCGCCGCCATCTGA 61.604 55.000 0.00 0.00 0.00 3.27
4985 5427 2.009424 TTCTCTCGCCGCCATCTGAG 62.009 60.000 0.00 0.00 0.00 3.35
4986 5428 2.440247 TCTCGCCGCCATCTGAGA 60.440 61.111 0.00 0.00 35.24 3.27
4987 5429 2.009424 CTCTCGCCGCCATCTGAGAA 62.009 60.000 0.00 0.00 37.06 2.87
4988 5430 1.153568 CTCGCCGCCATCTGAGAAA 60.154 57.895 0.00 0.00 0.00 2.52
4989 5431 0.531532 CTCGCCGCCATCTGAGAAAT 60.532 55.000 0.00 0.00 0.00 2.17
4990 5432 0.107703 TCGCCGCCATCTGAGAAATT 60.108 50.000 0.00 0.00 0.00 1.82
4991 5433 0.734889 CGCCGCCATCTGAGAAATTT 59.265 50.000 0.00 0.00 0.00 1.82
4992 5434 1.133025 CGCCGCCATCTGAGAAATTTT 59.867 47.619 0.00 0.00 0.00 1.82
4993 5435 2.533266 GCCGCCATCTGAGAAATTTTG 58.467 47.619 0.00 0.00 0.00 2.44
4994 5436 2.736400 GCCGCCATCTGAGAAATTTTGG 60.736 50.000 0.00 0.00 0.00 3.28
4995 5437 2.533266 CGCCATCTGAGAAATTTTGGC 58.467 47.619 16.15 16.15 44.78 4.52
4996 5438 2.736400 CGCCATCTGAGAAATTTTGGCC 60.736 50.000 18.96 0.00 45.30 5.36
4997 5439 2.498885 GCCATCTGAGAAATTTTGGCCT 59.501 45.455 15.51 0.00 42.96 5.19
4998 5440 3.429960 GCCATCTGAGAAATTTTGGCCTC 60.430 47.826 15.51 7.62 42.96 4.70
4999 5441 3.131755 CCATCTGAGAAATTTTGGCCTCC 59.868 47.826 3.32 0.00 0.00 4.30
5000 5442 3.814504 TCTGAGAAATTTTGGCCTCCT 57.185 42.857 3.32 0.00 0.00 3.69
5001 5443 3.690460 TCTGAGAAATTTTGGCCTCCTC 58.310 45.455 3.32 0.74 0.00 3.71
5002 5444 2.421424 CTGAGAAATTTTGGCCTCCTCG 59.579 50.000 3.32 0.00 0.00 4.63
5003 5445 2.224769 TGAGAAATTTTGGCCTCCTCGT 60.225 45.455 3.32 0.00 0.00 4.18
5004 5446 2.420372 GAGAAATTTTGGCCTCCTCGTC 59.580 50.000 3.32 0.00 0.00 4.20
5005 5447 2.040412 AGAAATTTTGGCCTCCTCGTCT 59.960 45.455 3.32 0.00 0.00 4.18
5006 5448 2.115343 AATTTTGGCCTCCTCGTCTC 57.885 50.000 3.32 0.00 0.00 3.36
5007 5449 0.253327 ATTTTGGCCTCCTCGTCTCC 59.747 55.000 3.32 0.00 0.00 3.71
5008 5450 2.167398 TTTTGGCCTCCTCGTCTCCG 62.167 60.000 3.32 0.00 0.00 4.63
5009 5451 3.578968 TTGGCCTCCTCGTCTCCGA 62.579 63.158 3.32 0.00 41.73 4.55
5010 5452 3.519930 GGCCTCCTCGTCTCCGAC 61.520 72.222 0.00 0.00 38.40 4.79
5011 5453 2.438795 GCCTCCTCGTCTCCGACT 60.439 66.667 0.00 0.00 38.40 4.18
5012 5454 2.766400 GCCTCCTCGTCTCCGACTG 61.766 68.421 0.00 0.00 38.40 3.51
5013 5455 2.766400 CCTCCTCGTCTCCGACTGC 61.766 68.421 0.00 0.00 38.40 4.40
5014 5456 2.750637 TCCTCGTCTCCGACTGCC 60.751 66.667 0.00 0.00 38.40 4.85
5015 5457 3.062466 CCTCGTCTCCGACTGCCA 61.062 66.667 0.00 0.00 38.40 4.92
5016 5458 2.418910 CCTCGTCTCCGACTGCCAT 61.419 63.158 0.00 0.00 38.40 4.40
5017 5459 1.064946 CTCGTCTCCGACTGCCATC 59.935 63.158 0.00 0.00 38.40 3.51
5018 5460 1.378646 TCGTCTCCGACTGCCATCT 60.379 57.895 0.00 0.00 38.40 2.90
5019 5461 0.965866 TCGTCTCCGACTGCCATCTT 60.966 55.000 0.00 0.00 38.40 2.40
5020 5462 0.803768 CGTCTCCGACTGCCATCTTG 60.804 60.000 0.00 0.00 35.63 3.02
5021 5463 0.460987 GTCTCCGACTGCCATCTTGG 60.461 60.000 0.00 0.00 41.55 3.61
5030 5472 3.494378 CCATCTTGGCGCTGAGTG 58.506 61.111 7.64 6.74 0.00 3.51
5031 5473 2.110967 CCATCTTGGCGCTGAGTGG 61.111 63.158 7.64 11.50 0.00 4.00
5032 5474 1.376424 CATCTTGGCGCTGAGTGGT 60.376 57.895 7.64 0.00 0.00 4.16
5033 5475 1.376424 ATCTTGGCGCTGAGTGGTG 60.376 57.895 7.64 0.00 0.00 4.17
5034 5476 2.809861 ATCTTGGCGCTGAGTGGTGG 62.810 60.000 7.64 0.00 0.00 4.61
5035 5477 4.641645 TTGGCGCTGAGTGGTGGG 62.642 66.667 7.64 0.00 0.00 4.61
5039 5481 4.394712 CGCTGAGTGGTGGGGGAC 62.395 72.222 0.00 0.00 0.00 4.46
5056 5498 4.779993 GGGACCTTGGAAATCTCTATGT 57.220 45.455 0.00 0.00 0.00 2.29
5057 5499 5.117406 GGGACCTTGGAAATCTCTATGTT 57.883 43.478 0.00 0.00 0.00 2.71
5058 5500 5.510430 GGGACCTTGGAAATCTCTATGTTT 58.490 41.667 0.00 0.00 0.00 2.83
5059 5501 5.952347 GGGACCTTGGAAATCTCTATGTTTT 59.048 40.000 0.00 0.00 0.00 2.43
5060 5502 6.437477 GGGACCTTGGAAATCTCTATGTTTTT 59.563 38.462 0.00 0.00 0.00 1.94
5081 5523 7.936496 TTTTTGTAATGCCTAGTGATCATCA 57.064 32.000 0.00 0.00 0.00 3.07
5082 5524 8.523915 TTTTTGTAATGCCTAGTGATCATCAT 57.476 30.769 0.00 0.00 0.00 2.45
5083 5525 9.625747 TTTTTGTAATGCCTAGTGATCATCATA 57.374 29.630 0.00 0.00 0.00 2.15
5084 5526 8.837788 TTTGTAATGCCTAGTGATCATCATAG 57.162 34.615 0.00 2.28 0.00 2.23
5085 5527 7.544804 TGTAATGCCTAGTGATCATCATAGT 57.455 36.000 0.00 0.00 0.00 2.12
5086 5528 7.966812 TGTAATGCCTAGTGATCATCATAGTT 58.033 34.615 0.00 0.00 0.00 2.24
5087 5529 8.090831 TGTAATGCCTAGTGATCATCATAGTTC 58.909 37.037 0.00 0.00 0.00 3.01
5088 5530 6.931790 ATGCCTAGTGATCATCATAGTTCT 57.068 37.500 0.00 0.00 0.00 3.01
5089 5531 6.094193 TGCCTAGTGATCATCATAGTTCTG 57.906 41.667 0.00 0.00 0.00 3.02
5090 5532 5.600069 TGCCTAGTGATCATCATAGTTCTGT 59.400 40.000 0.00 0.00 0.00 3.41
5091 5533 5.925397 GCCTAGTGATCATCATAGTTCTGTG 59.075 44.000 0.00 0.00 0.00 3.66
5092 5534 6.239148 GCCTAGTGATCATCATAGTTCTGTGA 60.239 42.308 0.00 2.09 0.00 3.58
5093 5535 7.369607 CCTAGTGATCATCATAGTTCTGTGAG 58.630 42.308 0.00 0.00 0.00 3.51
5094 5536 7.230309 CCTAGTGATCATCATAGTTCTGTGAGA 59.770 40.741 0.00 4.21 0.00 3.27
5095 5537 7.415592 AGTGATCATCATAGTTCTGTGAGAA 57.584 36.000 0.00 0.00 0.00 2.87
5096 5538 7.845037 AGTGATCATCATAGTTCTGTGAGAAA 58.155 34.615 0.00 0.00 35.75 2.52
5097 5539 8.316946 AGTGATCATCATAGTTCTGTGAGAAAA 58.683 33.333 0.00 0.00 35.75 2.29
5098 5540 8.939929 GTGATCATCATAGTTCTGTGAGAAAAA 58.060 33.333 0.00 0.00 35.75 1.94
5099 5541 8.939929 TGATCATCATAGTTCTGTGAGAAAAAC 58.060 33.333 0.00 0.00 35.75 2.43
5100 5542 8.853077 ATCATCATAGTTCTGTGAGAAAAACA 57.147 30.769 5.60 0.00 35.75 2.83
5101 5543 8.675705 TCATCATAGTTCTGTGAGAAAAACAA 57.324 30.769 5.60 0.00 35.75 2.83
5102 5544 9.288576 TCATCATAGTTCTGTGAGAAAAACAAT 57.711 29.630 5.60 0.00 35.75 2.71
5103 5545 9.903682 CATCATAGTTCTGTGAGAAAAACAATT 57.096 29.630 5.60 0.00 35.75 2.32
5105 5547 9.342308 TCATAGTTCTGTGAGAAAAACAATTCT 57.658 29.630 0.00 0.00 42.24 2.40
5106 5548 9.390795 CATAGTTCTGTGAGAAAAACAATTCTG 57.609 33.333 0.00 0.00 39.70 3.02
5107 5549 7.396540 AGTTCTGTGAGAAAAACAATTCTGT 57.603 32.000 0.00 0.00 39.70 3.41
5109 5551 7.970614 AGTTCTGTGAGAAAAACAATTCTGTTC 59.029 33.333 0.00 0.00 45.25 3.18
5110 5552 7.630242 TCTGTGAGAAAAACAATTCTGTTCT 57.370 32.000 0.00 0.00 45.25 3.01
5111 5553 8.055279 TCTGTGAGAAAAACAATTCTGTTCTT 57.945 30.769 0.00 0.00 45.25 2.52
5112 5554 8.522830 TCTGTGAGAAAAACAATTCTGTTCTTT 58.477 29.630 0.00 0.00 45.25 2.52
5113 5555 9.143631 CTGTGAGAAAAACAATTCTGTTCTTTT 57.856 29.630 0.00 0.00 45.25 2.27
5114 5556 8.924691 TGTGAGAAAAACAATTCTGTTCTTTTG 58.075 29.630 0.00 0.00 45.25 2.44
5115 5557 8.382875 GTGAGAAAAACAATTCTGTTCTTTTGG 58.617 33.333 0.00 0.00 45.25 3.28
5116 5558 7.064490 TGAGAAAAACAATTCTGTTCTTTTGGC 59.936 33.333 0.00 0.00 45.25 4.52
5117 5559 6.878389 AGAAAAACAATTCTGTTCTTTTGGCA 59.122 30.769 0.00 0.00 45.25 4.92
5118 5560 6.667007 AAAACAATTCTGTTCTTTTGGCAG 57.333 33.333 0.00 0.00 45.25 4.85
5119 5561 5.343307 AACAATTCTGTTCTTTTGGCAGT 57.657 34.783 0.00 0.00 42.25 4.40
5120 5562 4.685924 ACAATTCTGTTCTTTTGGCAGTG 58.314 39.130 0.00 0.00 28.57 3.66
5121 5563 2.869233 TTCTGTTCTTTTGGCAGTGC 57.131 45.000 6.55 6.55 0.00 4.40
5122 5564 7.916899 ACAATTCTGTTCTTTTGGCAGTGCC 62.917 44.000 28.01 28.01 40.43 5.01
5133 5575 3.861341 GCAGTGCCATGAGGTTAGA 57.139 52.632 2.85 0.00 37.19 2.10
5134 5576 1.661341 GCAGTGCCATGAGGTTAGAG 58.339 55.000 2.85 0.00 37.19 2.43
5135 5577 1.208052 GCAGTGCCATGAGGTTAGAGA 59.792 52.381 2.85 0.00 37.19 3.10
5136 5578 2.355108 GCAGTGCCATGAGGTTAGAGAA 60.355 50.000 2.85 0.00 37.19 2.87
5137 5579 3.683847 GCAGTGCCATGAGGTTAGAGAAT 60.684 47.826 2.85 0.00 37.19 2.40
5138 5580 4.521146 CAGTGCCATGAGGTTAGAGAATT 58.479 43.478 0.00 0.00 37.19 2.17
5139 5581 4.946157 CAGTGCCATGAGGTTAGAGAATTT 59.054 41.667 0.00 0.00 37.19 1.82
5140 5582 5.416952 CAGTGCCATGAGGTTAGAGAATTTT 59.583 40.000 0.00 0.00 37.19 1.82
5141 5583 6.599244 CAGTGCCATGAGGTTAGAGAATTTTA 59.401 38.462 0.00 0.00 37.19 1.52
5142 5584 7.284034 CAGTGCCATGAGGTTAGAGAATTTTAT 59.716 37.037 0.00 0.00 37.19 1.40
5143 5585 7.284034 AGTGCCATGAGGTTAGAGAATTTTATG 59.716 37.037 0.00 0.00 37.19 1.90
5144 5586 7.067494 GTGCCATGAGGTTAGAGAATTTTATGT 59.933 37.037 0.00 0.00 37.19 2.29
5145 5587 7.283127 TGCCATGAGGTTAGAGAATTTTATGTC 59.717 37.037 0.00 0.00 37.19 3.06
5146 5588 7.255277 GCCATGAGGTTAGAGAATTTTATGTCC 60.255 40.741 0.00 0.00 37.19 4.02
5147 5589 7.995488 CCATGAGGTTAGAGAATTTTATGTCCT 59.005 37.037 0.00 0.00 0.00 3.85
5148 5590 9.401058 CATGAGGTTAGAGAATTTTATGTCCTT 57.599 33.333 0.00 0.00 0.00 3.36
5149 5591 8.792830 TGAGGTTAGAGAATTTTATGTCCTTG 57.207 34.615 0.00 0.00 0.00 3.61
5150 5592 7.336931 TGAGGTTAGAGAATTTTATGTCCTTGC 59.663 37.037 0.00 0.00 0.00 4.01
5151 5593 7.175104 AGGTTAGAGAATTTTATGTCCTTGCA 58.825 34.615 0.00 0.00 0.00 4.08
5152 5594 7.337942 AGGTTAGAGAATTTTATGTCCTTGCAG 59.662 37.037 0.00 0.00 0.00 4.41
5153 5595 7.336931 GGTTAGAGAATTTTATGTCCTTGCAGA 59.663 37.037 0.00 0.00 0.00 4.26
5154 5596 8.897752 GTTAGAGAATTTTATGTCCTTGCAGAT 58.102 33.333 0.00 0.00 0.00 2.90
5155 5597 7.951347 AGAGAATTTTATGTCCTTGCAGATT 57.049 32.000 0.00 0.00 0.00 2.40
5156 5598 7.994194 AGAGAATTTTATGTCCTTGCAGATTC 58.006 34.615 0.00 0.00 0.00 2.52
5157 5599 7.613022 AGAGAATTTTATGTCCTTGCAGATTCA 59.387 33.333 0.00 0.00 0.00 2.57
5158 5600 8.125978 AGAATTTTATGTCCTTGCAGATTCAA 57.874 30.769 0.00 0.00 0.00 2.69
5159 5601 8.755977 AGAATTTTATGTCCTTGCAGATTCAAT 58.244 29.630 0.00 0.00 0.00 2.57
5160 5602 9.374838 GAATTTTATGTCCTTGCAGATTCAATT 57.625 29.630 0.00 0.00 0.00 2.32
5165 5607 6.122850 TGTCCTTGCAGATTCAATTATTCG 57.877 37.500 0.00 0.00 0.00 3.34
5166 5608 5.066375 TGTCCTTGCAGATTCAATTATTCGG 59.934 40.000 0.00 0.00 0.00 4.30
5167 5609 5.296780 GTCCTTGCAGATTCAATTATTCGGA 59.703 40.000 0.00 0.00 0.00 4.55
5168 5610 6.016777 GTCCTTGCAGATTCAATTATTCGGAT 60.017 38.462 0.00 0.00 0.00 4.18
5169 5611 6.205464 TCCTTGCAGATTCAATTATTCGGATC 59.795 38.462 0.00 0.00 0.00 3.36
5170 5612 6.206243 CCTTGCAGATTCAATTATTCGGATCT 59.794 38.462 0.00 0.00 0.00 2.75
5171 5613 6.549912 TGCAGATTCAATTATTCGGATCTG 57.450 37.500 15.22 15.22 37.80 2.90
5172 5614 6.290605 TGCAGATTCAATTATTCGGATCTGA 58.709 36.000 19.97 0.00 37.15 3.27
5173 5615 6.203530 TGCAGATTCAATTATTCGGATCTGAC 59.796 38.462 19.97 14.52 37.15 3.51
5174 5616 6.617317 GCAGATTCAATTATTCGGATCTGACG 60.617 42.308 19.97 0.00 37.15 4.35
5175 5617 6.642540 CAGATTCAATTATTCGGATCTGACGA 59.357 38.462 2.94 0.00 37.15 4.20
5176 5618 6.865726 AGATTCAATTATTCGGATCTGACGAG 59.134 38.462 2.94 0.00 41.81 4.18
5177 5619 5.515797 TCAATTATTCGGATCTGACGAGT 57.484 39.130 2.94 0.00 41.81 4.18
5178 5620 5.902681 TCAATTATTCGGATCTGACGAGTT 58.097 37.500 2.94 0.00 41.81 3.01
5179 5621 6.338146 TCAATTATTCGGATCTGACGAGTTT 58.662 36.000 2.94 0.00 41.81 2.66
5180 5622 7.485810 TCAATTATTCGGATCTGACGAGTTTA 58.514 34.615 2.94 0.00 41.81 2.01
5181 5623 8.141909 TCAATTATTCGGATCTGACGAGTTTAT 58.858 33.333 2.94 0.00 41.81 1.40
5182 5624 7.875316 ATTATTCGGATCTGACGAGTTTATG 57.125 36.000 2.94 0.00 41.81 1.90
5183 5625 4.713824 TTCGGATCTGACGAGTTTATGT 57.286 40.909 2.94 0.00 41.81 2.29
5184 5626 4.713824 TCGGATCTGACGAGTTTATGTT 57.286 40.909 0.00 0.00 35.12 2.71
5185 5627 4.421058 TCGGATCTGACGAGTTTATGTTG 58.579 43.478 0.00 0.00 35.12 3.33
5186 5628 4.082408 TCGGATCTGACGAGTTTATGTTGT 60.082 41.667 0.00 0.00 35.12 3.32
5187 5629 4.265556 CGGATCTGACGAGTTTATGTTGTC 59.734 45.833 0.00 0.00 0.00 3.18
5188 5630 4.265556 GGATCTGACGAGTTTATGTTGTCG 59.734 45.833 0.00 0.00 38.40 4.35
5190 5632 3.978855 TCTGACGAGTTTATGTTGTCGTG 59.021 43.478 0.26 0.00 45.25 4.35
5191 5633 2.473609 TGACGAGTTTATGTTGTCGTGC 59.526 45.455 0.26 0.00 45.25 5.34
5192 5634 1.796459 ACGAGTTTATGTTGTCGTGCC 59.204 47.619 0.00 0.00 43.69 5.01
5193 5635 1.795872 CGAGTTTATGTTGTCGTGCCA 59.204 47.619 0.00 0.00 0.00 4.92
5194 5636 2.222213 CGAGTTTATGTTGTCGTGCCAA 59.778 45.455 0.00 0.00 0.00 4.52
5195 5637 3.664276 CGAGTTTATGTTGTCGTGCCAAG 60.664 47.826 0.00 0.00 0.00 3.61
5196 5638 2.031157 AGTTTATGTTGTCGTGCCAAGC 60.031 45.455 0.00 0.00 0.00 4.01
5197 5639 1.890876 TTATGTTGTCGTGCCAAGCT 58.109 45.000 0.00 0.00 0.00 3.74
5198 5640 1.890876 TATGTTGTCGTGCCAAGCTT 58.109 45.000 0.00 0.00 0.00 3.74
5199 5641 1.032014 ATGTTGTCGTGCCAAGCTTT 58.968 45.000 0.00 0.00 0.00 3.51
5200 5642 0.814457 TGTTGTCGTGCCAAGCTTTT 59.186 45.000 0.00 0.00 0.00 2.27
5201 5643 1.203523 TGTTGTCGTGCCAAGCTTTTT 59.796 42.857 0.00 0.00 0.00 1.94
5222 5664 7.411486 TTTTTGTTACTTGATTCTTGGTGGA 57.589 32.000 0.00 0.00 0.00 4.02
5223 5665 6.633500 TTTGTTACTTGATTCTTGGTGGAG 57.367 37.500 0.00 0.00 0.00 3.86
5224 5666 4.651778 TGTTACTTGATTCTTGGTGGAGG 58.348 43.478 0.00 0.00 0.00 4.30
5225 5667 4.104102 TGTTACTTGATTCTTGGTGGAGGT 59.896 41.667 0.00 0.00 0.00 3.85
5226 5668 3.146104 ACTTGATTCTTGGTGGAGGTG 57.854 47.619 0.00 0.00 0.00 4.00
5227 5669 2.711009 ACTTGATTCTTGGTGGAGGTGA 59.289 45.455 0.00 0.00 0.00 4.02
5228 5670 3.138283 ACTTGATTCTTGGTGGAGGTGAA 59.862 43.478 0.00 0.00 0.00 3.18
5229 5671 3.874383 TGATTCTTGGTGGAGGTGAAA 57.126 42.857 0.00 0.00 0.00 2.69
5230 5672 4.387026 TGATTCTTGGTGGAGGTGAAAT 57.613 40.909 0.00 0.00 0.00 2.17
5231 5673 4.739793 TGATTCTTGGTGGAGGTGAAATT 58.260 39.130 0.00 0.00 0.00 1.82
5232 5674 5.147032 TGATTCTTGGTGGAGGTGAAATTT 58.853 37.500 0.00 0.00 0.00 1.82
5233 5675 5.602145 TGATTCTTGGTGGAGGTGAAATTTT 59.398 36.000 0.00 0.00 0.00 1.82
5234 5676 5.948742 TTCTTGGTGGAGGTGAAATTTTT 57.051 34.783 0.00 0.00 0.00 1.94
5235 5677 5.529581 TCTTGGTGGAGGTGAAATTTTTC 57.470 39.130 0.00 0.00 37.69 2.29
5236 5678 4.959210 TCTTGGTGGAGGTGAAATTTTTCA 59.041 37.500 1.66 1.66 44.31 2.69
5250 5692 8.312896 TGAAATTTTTCATCAACATCATGTGG 57.687 30.769 1.66 0.00 41.88 4.17
5251 5693 8.148999 TGAAATTTTTCATCAACATCATGTGGA 58.851 29.630 0.00 0.00 41.88 4.02
5252 5694 8.542497 AAATTTTTCATCAACATCATGTGGAG 57.458 30.769 0.29 0.00 33.11 3.86
5253 5695 6.897706 TTTTTCATCAACATCATGTGGAGA 57.102 33.333 0.29 0.00 33.11 3.71
5254 5696 7.470935 TTTTTCATCAACATCATGTGGAGAT 57.529 32.000 0.29 0.00 33.11 2.75
5255 5697 8.578448 TTTTTCATCAACATCATGTGGAGATA 57.422 30.769 0.29 0.00 33.11 1.98
5256 5698 8.756486 TTTTCATCAACATCATGTGGAGATAT 57.244 30.769 0.29 0.00 33.11 1.63
5257 5699 9.850198 TTTTCATCAACATCATGTGGAGATATA 57.150 29.630 0.29 0.00 33.11 0.86
5258 5700 9.498176 TTTCATCAACATCATGTGGAGATATAG 57.502 33.333 0.29 0.00 33.11 1.31
5259 5701 8.198807 TCATCAACATCATGTGGAGATATAGT 57.801 34.615 0.29 0.00 33.11 2.12
5260 5702 8.092687 TCATCAACATCATGTGGAGATATAGTG 58.907 37.037 0.29 0.00 33.11 2.74
5261 5703 7.601705 TCAACATCATGTGGAGATATAGTGA 57.398 36.000 0.00 0.00 0.00 3.41
5262 5704 7.436933 TCAACATCATGTGGAGATATAGTGAC 58.563 38.462 0.00 0.00 0.00 3.67
5263 5705 7.288621 TCAACATCATGTGGAGATATAGTGACT 59.711 37.037 0.00 0.00 0.00 3.41
5264 5706 7.225784 ACATCATGTGGAGATATAGTGACTC 57.774 40.000 0.00 0.00 0.00 3.36
5265 5707 5.948992 TCATGTGGAGATATAGTGACTCG 57.051 43.478 0.00 0.00 0.00 4.18
5266 5708 5.621193 TCATGTGGAGATATAGTGACTCGA 58.379 41.667 0.00 0.00 0.00 4.04
5267 5709 5.470437 TCATGTGGAGATATAGTGACTCGAC 59.530 44.000 0.00 0.00 38.92 4.20
5268 5710 3.808174 TGTGGAGATATAGTGACTCGACG 59.192 47.826 0.00 0.00 40.44 5.12
5269 5711 3.186817 GTGGAGATATAGTGACTCGACGG 59.813 52.174 0.00 0.00 32.08 4.79
5270 5712 2.160022 GGAGATATAGTGACTCGACGGC 59.840 54.545 0.00 0.00 0.00 5.68
5271 5713 2.152830 AGATATAGTGACTCGACGGCC 58.847 52.381 0.00 0.00 0.00 6.13
5272 5714 2.152830 GATATAGTGACTCGACGGCCT 58.847 52.381 0.00 0.00 0.00 5.19
5273 5715 1.306148 TATAGTGACTCGACGGCCTG 58.694 55.000 0.00 0.00 0.00 4.85
5274 5716 2.005960 ATAGTGACTCGACGGCCTGC 62.006 60.000 0.00 0.00 0.00 4.85
5275 5717 4.357947 GTGACTCGACGGCCTGCA 62.358 66.667 0.00 0.00 0.00 4.41
5276 5718 4.357947 TGACTCGACGGCCTGCAC 62.358 66.667 0.00 0.00 0.00 4.57
5277 5719 4.057428 GACTCGACGGCCTGCACT 62.057 66.667 0.00 0.00 0.00 4.40
5278 5720 3.575351 GACTCGACGGCCTGCACTT 62.575 63.158 0.00 0.00 0.00 3.16
5279 5721 2.209064 GACTCGACGGCCTGCACTTA 62.209 60.000 0.00 0.00 0.00 2.24
5280 5722 1.141881 CTCGACGGCCTGCACTTAT 59.858 57.895 0.00 0.00 0.00 1.73
5281 5723 0.384309 CTCGACGGCCTGCACTTATA 59.616 55.000 0.00 0.00 0.00 0.98
5282 5724 0.101759 TCGACGGCCTGCACTTATAC 59.898 55.000 0.00 0.00 0.00 1.47
5283 5725 1.206745 CGACGGCCTGCACTTATACG 61.207 60.000 0.00 0.00 0.00 3.06
5284 5726 0.874607 GACGGCCTGCACTTATACGG 60.875 60.000 0.00 0.00 0.00 4.02
5285 5727 1.324740 ACGGCCTGCACTTATACGGA 61.325 55.000 0.00 0.00 0.00 4.69
5286 5728 0.179094 CGGCCTGCACTTATACGGAA 60.179 55.000 0.00 0.00 0.00 4.30
5287 5729 1.540363 CGGCCTGCACTTATACGGAAT 60.540 52.381 0.00 0.00 0.00 3.01
5288 5730 2.143925 GGCCTGCACTTATACGGAATC 58.856 52.381 0.00 0.00 0.00 2.52
5289 5731 2.484770 GGCCTGCACTTATACGGAATCA 60.485 50.000 0.00 0.00 0.00 2.57
5290 5732 3.403038 GCCTGCACTTATACGGAATCAT 58.597 45.455 0.00 0.00 0.00 2.45
5291 5733 3.433615 GCCTGCACTTATACGGAATCATC 59.566 47.826 0.00 0.00 0.00 2.92
5292 5734 3.675225 CCTGCACTTATACGGAATCATCG 59.325 47.826 0.00 0.00 0.00 3.84
5293 5735 4.299155 CTGCACTTATACGGAATCATCGT 58.701 43.478 0.00 0.00 43.64 3.73
5294 5736 4.295870 TGCACTTATACGGAATCATCGTC 58.704 43.478 0.00 0.00 41.38 4.20
5295 5737 3.361053 GCACTTATACGGAATCATCGTCG 59.639 47.826 0.00 0.00 41.38 5.12
5296 5738 3.912563 CACTTATACGGAATCATCGTCGG 59.087 47.826 0.00 0.00 41.38 4.79
5297 5739 2.624316 TATACGGAATCATCGTCGGC 57.376 50.000 0.00 0.00 41.38 5.54
5298 5740 0.038526 ATACGGAATCATCGTCGGCC 60.039 55.000 0.00 0.00 41.38 6.13
5299 5741 2.079020 TACGGAATCATCGTCGGCCC 62.079 60.000 0.00 0.00 41.38 5.80
5300 5742 2.504032 GGAATCATCGTCGGCCCA 59.496 61.111 0.00 0.00 0.00 5.36
5301 5743 1.153249 GGAATCATCGTCGGCCCAA 60.153 57.895 0.00 0.00 0.00 4.12
5302 5744 1.160329 GGAATCATCGTCGGCCCAAG 61.160 60.000 0.00 0.00 0.00 3.61
5303 5745 0.462047 GAATCATCGTCGGCCCAAGT 60.462 55.000 0.00 0.00 0.00 3.16
5304 5746 0.828022 AATCATCGTCGGCCCAAGTA 59.172 50.000 0.00 0.00 0.00 2.24
5305 5747 0.104304 ATCATCGTCGGCCCAAGTAC 59.896 55.000 0.00 0.00 0.00 2.73
5306 5748 1.876714 CATCGTCGGCCCAAGTACG 60.877 63.158 0.00 0.00 36.71 3.67
5307 5749 2.345760 ATCGTCGGCCCAAGTACGT 61.346 57.895 0.00 0.00 36.73 3.57
5308 5750 1.880819 ATCGTCGGCCCAAGTACGTT 61.881 55.000 0.00 0.00 36.73 3.99
5309 5751 2.090524 CGTCGGCCCAAGTACGTTC 61.091 63.158 0.00 0.00 0.00 3.95
5310 5752 1.005867 GTCGGCCCAAGTACGTTCA 60.006 57.895 0.00 0.00 0.00 3.18
5311 5753 0.390735 GTCGGCCCAAGTACGTTCAT 60.391 55.000 0.00 0.00 0.00 2.57
5312 5754 0.322322 TCGGCCCAAGTACGTTCATT 59.678 50.000 0.00 0.00 0.00 2.57
5313 5755 1.549620 TCGGCCCAAGTACGTTCATTA 59.450 47.619 0.00 0.00 0.00 1.90
5314 5756 2.168936 TCGGCCCAAGTACGTTCATTAT 59.831 45.455 0.00 0.00 0.00 1.28
5315 5757 2.542595 CGGCCCAAGTACGTTCATTATC 59.457 50.000 0.00 0.00 0.00 1.75
5316 5758 3.537580 GGCCCAAGTACGTTCATTATCA 58.462 45.455 0.00 0.00 0.00 2.15
5317 5759 3.942748 GGCCCAAGTACGTTCATTATCAA 59.057 43.478 0.00 0.00 0.00 2.57
5318 5760 4.035208 GGCCCAAGTACGTTCATTATCAAG 59.965 45.833 0.00 0.00 0.00 3.02
5319 5761 4.035208 GCCCAAGTACGTTCATTATCAAGG 59.965 45.833 0.00 0.00 0.00 3.61
5320 5762 5.183228 CCCAAGTACGTTCATTATCAAGGT 58.817 41.667 0.00 0.00 0.00 3.50
5321 5763 5.646360 CCCAAGTACGTTCATTATCAAGGTT 59.354 40.000 0.00 0.00 0.00 3.50
5322 5764 6.183360 CCCAAGTACGTTCATTATCAAGGTTC 60.183 42.308 0.00 0.00 0.00 3.62
5323 5765 6.183360 CCAAGTACGTTCATTATCAAGGTTCC 60.183 42.308 0.00 0.00 0.00 3.62
5324 5766 5.425630 AGTACGTTCATTATCAAGGTTCCC 58.574 41.667 0.00 0.00 0.00 3.97
5325 5767 3.617284 ACGTTCATTATCAAGGTTCCCC 58.383 45.455 0.00 0.00 0.00 4.81
5326 5768 3.009695 ACGTTCATTATCAAGGTTCCCCA 59.990 43.478 0.00 0.00 0.00 4.96
5327 5769 4.207165 CGTTCATTATCAAGGTTCCCCAT 58.793 43.478 0.00 0.00 0.00 4.00
5328 5770 4.275936 CGTTCATTATCAAGGTTCCCCATC 59.724 45.833 0.00 0.00 0.00 3.51
5329 5771 5.449553 GTTCATTATCAAGGTTCCCCATCT 58.550 41.667 0.00 0.00 0.00 2.90
5330 5772 5.052693 TCATTATCAAGGTTCCCCATCTG 57.947 43.478 0.00 0.00 0.00 2.90
5331 5773 4.478317 TCATTATCAAGGTTCCCCATCTGT 59.522 41.667 0.00 0.00 0.00 3.41
5332 5774 4.946160 TTATCAAGGTTCCCCATCTGTT 57.054 40.909 0.00 0.00 0.00 3.16
5333 5775 3.833559 ATCAAGGTTCCCCATCTGTTT 57.166 42.857 0.00 0.00 0.00 2.83
5334 5776 4.946160 ATCAAGGTTCCCCATCTGTTTA 57.054 40.909 0.00 0.00 0.00 2.01
5335 5777 4.301072 TCAAGGTTCCCCATCTGTTTAG 57.699 45.455 0.00 0.00 0.00 1.85
5336 5778 3.913799 TCAAGGTTCCCCATCTGTTTAGA 59.086 43.478 0.00 0.00 37.35 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.648067 TCCAAAAGTCCAGAGATGTGACT 59.352 43.478 0.00 0.00 40.94 3.41
54 55 2.274437 GGATCGGGTACGGTTCTTTTC 58.726 52.381 0.00 0.00 41.39 2.29
102 103 1.878522 GTATGGGACTGTCGCTGCG 60.879 63.158 22.89 17.25 0.00 5.18
108 109 0.613260 TGGCAGTGTATGGGACTGTC 59.387 55.000 0.00 0.00 44.73 3.51
115 116 1.402968 GTGATTGCTGGCAGTGTATGG 59.597 52.381 17.16 0.00 0.00 2.74
232 272 2.769663 TGGCCGGTGAATTAGTATCTGT 59.230 45.455 1.90 0.00 0.00 3.41
237 277 1.184431 TCGTGGCCGGTGAATTAGTA 58.816 50.000 1.90 0.00 33.95 1.82
239 279 0.725117 GTTCGTGGCCGGTGAATTAG 59.275 55.000 1.90 0.00 33.95 1.73
260 300 0.388263 GGAACGGTGGAACTCTCGTC 60.388 60.000 0.00 0.00 36.74 4.20
336 404 1.363744 CGACTGTGGCCAGATCTTTC 58.636 55.000 5.11 0.00 41.50 2.62
448 523 2.343758 CGGTGGTGGTCTGGTCTG 59.656 66.667 0.00 0.00 0.00 3.51
449 524 2.122989 ACGGTGGTGGTCTGGTCT 60.123 61.111 0.00 0.00 0.00 3.85
450 525 2.342648 GACGGTGGTGGTCTGGTC 59.657 66.667 0.00 0.00 0.00 4.02
451 526 2.445085 TGACGGTGGTGGTCTGGT 60.445 61.111 0.00 0.00 35.45 4.00
452 527 2.030562 GTGACGGTGGTGGTCTGG 59.969 66.667 0.00 0.00 35.45 3.86
1578 1992 2.361104 TTGATGACAAGGGCGGCC 60.361 61.111 22.67 22.67 0.00 6.13
1783 2198 0.336737 ACCCCCAGGAACACAACAAA 59.663 50.000 0.00 0.00 36.73 2.83
1784 2199 1.133730 GTACCCCCAGGAACACAACAA 60.134 52.381 0.00 0.00 36.73 2.83
1785 2200 0.475044 GTACCCCCAGGAACACAACA 59.525 55.000 0.00 0.00 36.73 3.33
1790 2205 2.045326 ACATAGAGTACCCCCAGGAACA 59.955 50.000 0.00 0.00 36.73 3.18
1864 2280 6.094325 ACTTCCAGTCGATCTTCTACTACTTG 59.906 42.308 0.00 0.00 0.00 3.16
1940 2356 6.325545 ACCATGAATTCTAAATGCCATGACAT 59.674 34.615 7.05 0.00 34.87 3.06
1944 2360 6.342906 ACAACCATGAATTCTAAATGCCATG 58.657 36.000 7.05 0.07 33.28 3.66
1946 2362 5.999205 ACAACCATGAATTCTAAATGCCA 57.001 34.783 7.05 0.00 0.00 4.92
1947 2363 6.862209 TGTACAACCATGAATTCTAAATGCC 58.138 36.000 7.05 0.00 0.00 4.40
1948 2364 9.669353 CTATGTACAACCATGAATTCTAAATGC 57.331 33.333 7.05 0.00 0.00 3.56
1960 2376 6.818142 TCACAGATCAACTATGTACAACCATG 59.182 38.462 0.00 0.00 0.00 3.66
1983 2399 7.201661 GGTTAACATGGCAAATTACTCGTATCA 60.202 37.037 8.10 0.00 0.00 2.15
2009 2425 1.396996 CCTGAAACCCGCAGTAATTCG 59.603 52.381 0.00 0.00 0.00 3.34
2011 2427 2.579410 ACCTGAAACCCGCAGTAATT 57.421 45.000 0.00 0.00 0.00 1.40
2017 2433 1.611491 GATTGAAACCTGAAACCCGCA 59.389 47.619 0.00 0.00 0.00 5.69
2039 2455 3.102052 ACCTGCAAAAATGCTGTGAAG 57.898 42.857 2.22 0.00 35.49 3.02
2040 2456 3.196463 CAACCTGCAAAAATGCTGTGAA 58.804 40.909 2.22 0.00 35.49 3.18
2041 2457 2.823984 CAACCTGCAAAAATGCTGTGA 58.176 42.857 2.22 0.00 35.49 3.58
2054 2470 3.428045 GGTCACAAATATGAGCAACCTGC 60.428 47.826 0.30 0.00 44.73 4.85
2067 2483 8.645814 ATTAGATGATATGCATGGTCACAAAT 57.354 30.769 10.16 10.63 37.34 2.32
2100 2516 6.214399 ACCGACTTGTACAGAAGTTTAGAAG 58.786 40.000 1.83 0.00 36.27 2.85
2102 2518 5.779529 ACCGACTTGTACAGAAGTTTAGA 57.220 39.130 1.83 0.00 36.27 2.10
2103 2519 5.176958 CCAACCGACTTGTACAGAAGTTTAG 59.823 44.000 1.83 0.00 36.27 1.85
2113 2529 3.241067 TGCTATCCAACCGACTTGTAC 57.759 47.619 0.00 0.00 0.00 2.90
2114 2530 4.054780 GATGCTATCCAACCGACTTGTA 57.945 45.455 0.00 0.00 0.00 2.41
2133 2549 5.184479 CCAACTCATGACTCACAAATTGGAT 59.816 40.000 0.00 0.00 34.72 3.41
2135 2551 4.279169 ACCAACTCATGACTCACAAATTGG 59.721 41.667 0.00 10.43 36.75 3.16
2137 2553 5.707298 CCTACCAACTCATGACTCACAAATT 59.293 40.000 0.00 0.00 0.00 1.82
2142 2558 4.537135 TTCCTACCAACTCATGACTCAC 57.463 45.455 0.00 0.00 0.00 3.51
2150 2566 7.336679 CACATGAATACATTTCCTACCAACTCA 59.663 37.037 0.00 0.00 34.15 3.41
2151 2567 7.336931 ACACATGAATACATTTCCTACCAACTC 59.663 37.037 0.00 0.00 34.15 3.01
2166 2583 5.049818 GCAAGAGGAGCATACACATGAATAC 60.050 44.000 0.00 0.00 33.67 1.89
2178 2595 1.002888 CATATCGGGCAAGAGGAGCAT 59.997 52.381 0.00 0.00 0.00 3.79
2180 2597 0.952984 GCATATCGGGCAAGAGGAGC 60.953 60.000 0.00 0.00 0.00 4.70
2192 2609 5.152623 TCCCCAATTCTCTAAGCATATCG 57.847 43.478 0.00 0.00 0.00 2.92
2209 2626 2.378208 TGACACTCCATTCAAATCCCCA 59.622 45.455 0.00 0.00 0.00 4.96
2227 2646 1.696832 GATGGGCGCTCGACTTTGAC 61.697 60.000 7.64 0.00 0.00 3.18
2279 2701 9.729550 ATATTGGGCCTCAGACTATACATATAA 57.270 33.333 4.53 0.00 0.00 0.98
2297 2719 7.422878 GTACTTTAAGAGTGCTATATTGGGC 57.577 40.000 0.00 0.00 39.48 5.36
2364 2786 7.649306 GCCCAATTCAATGAATACAATCAGTAC 59.351 37.037 9.09 0.00 35.05 2.73
2380 2802 1.799933 AACCAAGTGGCCCAATTCAA 58.200 45.000 0.00 0.00 39.32 2.69
2425 2847 1.003580 TCTTGATGCAGAACTGGTCCC 59.996 52.381 3.99 0.00 0.00 4.46
2427 2849 3.051081 ACTCTTGATGCAGAACTGGTC 57.949 47.619 3.99 0.00 0.00 4.02
2480 2902 4.074970 AGCTAAACATTCACCACTTCCAG 58.925 43.478 0.00 0.00 0.00 3.86
2481 2903 4.072131 GAGCTAAACATTCACCACTTCCA 58.928 43.478 0.00 0.00 0.00 3.53
2499 2921 8.571461 TCATCATTTAAACAAGAATCTGAGCT 57.429 30.769 0.00 0.00 0.00 4.09
2604 3026 6.976934 ACCAATTCATGACTAAAAACACCT 57.023 33.333 0.00 0.00 0.00 4.00
2606 3028 7.367285 TGCTACCAATTCATGACTAAAAACAC 58.633 34.615 0.00 0.00 0.00 3.32
2608 3030 8.028938 ACATGCTACCAATTCATGACTAAAAAC 58.971 33.333 10.18 0.00 39.80 2.43
2652 3074 8.778358 CAATTACCTTGGATATCTAGCAAGAAC 58.222 37.037 17.08 0.00 34.73 3.01
2654 3076 8.262601 TCAATTACCTTGGATATCTAGCAAGA 57.737 34.615 17.08 3.42 35.43 3.02
2655 3077 7.605691 CCTCAATTACCTTGGATATCTAGCAAG 59.394 40.741 11.28 11.28 35.43 4.01
2706 3131 1.086696 CGCCACCACAAGTAGAATGG 58.913 55.000 0.00 0.00 39.57 3.16
2724 3149 8.673275 CGCAAATAAGAAAAATTAGTATCAGCG 58.327 33.333 0.00 0.00 0.00 5.18
2882 3307 6.210385 ACCATATTCAAAACATTACACAGCCA 59.790 34.615 0.00 0.00 0.00 4.75
2944 3369 7.782168 AGACTATATGACTCCATTCAGACAGAA 59.218 37.037 0.00 0.00 41.28 3.02
3131 3558 5.450965 GGCTTACTGCATTGCATTAGACATT 60.451 40.000 12.53 0.00 45.15 2.71
3132 3559 4.037208 GGCTTACTGCATTGCATTAGACAT 59.963 41.667 12.53 0.00 45.15 3.06
3133 3560 3.378112 GGCTTACTGCATTGCATTAGACA 59.622 43.478 12.53 0.00 45.15 3.41
3134 3561 3.378112 TGGCTTACTGCATTGCATTAGAC 59.622 43.478 12.53 11.96 45.15 2.59
3135 3562 3.619419 TGGCTTACTGCATTGCATTAGA 58.381 40.909 12.53 2.06 45.15 2.10
3136 3563 3.794475 GCTGGCTTACTGCATTGCATTAG 60.794 47.826 12.53 10.51 45.15 1.73
3137 3564 2.099592 GCTGGCTTACTGCATTGCATTA 59.900 45.455 12.53 8.25 45.15 1.90
3157 3584 6.641474 AGTGTCTAATAAGAAGTACCAAGGC 58.359 40.000 0.00 0.00 32.16 4.35
3158 3585 9.583765 GTAAGTGTCTAATAAGAAGTACCAAGG 57.416 37.037 0.00 0.00 32.16 3.61
3162 3594 7.989826 TCGGTAAGTGTCTAATAAGAAGTACC 58.010 38.462 0.00 0.00 32.16 3.34
3185 3617 6.863645 TGACAGAAGACTCTTGAACTTAATCG 59.136 38.462 0.00 0.00 0.00 3.34
3190 3622 4.754114 GCATGACAGAAGACTCTTGAACTT 59.246 41.667 0.00 0.00 0.00 2.66
3312 3748 2.009051 CACTCAATGTTCATGCGGCTA 58.991 47.619 0.00 0.00 0.00 3.93
3341 3777 4.970711 AGAGCAGTGCAGCATTAGATAAT 58.029 39.130 19.20 0.00 36.85 1.28
3368 3804 8.510243 TGTTGTCACTTATCATCATTTGCTAT 57.490 30.769 0.00 0.00 0.00 2.97
3460 3896 1.561076 ACATCTGCATCCCTTAGCACA 59.439 47.619 0.00 0.00 36.62 4.57
3523 3959 4.994852 TCAGGAACCAAGTAAAGTCAATCG 59.005 41.667 0.00 0.00 0.00 3.34
3524 3960 6.877611 TTCAGGAACCAAGTAAAGTCAATC 57.122 37.500 0.00 0.00 0.00 2.67
3533 3969 2.508300 GGGGCTATTCAGGAACCAAGTA 59.492 50.000 0.00 0.00 0.00 2.24
3788 4226 0.252193 AGACAGCTTCCAGAGAGCCT 60.252 55.000 0.00 0.00 41.03 4.58
3870 4308 4.831155 TCGACTTATAAGATCCCGTCCAAT 59.169 41.667 19.38 0.00 0.00 3.16
4011 4449 5.525378 GGATGACCTGAAACAGTATCATCAC 59.475 44.000 26.02 18.49 44.75 3.06
4022 4460 2.094675 CACCCATGGATGACCTGAAAC 58.905 52.381 15.22 0.00 37.04 2.78
4082 4520 6.183360 GGTGCTACAATCTTGTTAGTGACATC 60.183 42.308 0.20 0.00 42.35 3.06
4453 4891 4.847198 TCTACAGCATCACCATGTCAAAT 58.153 39.130 0.00 0.00 31.86 2.32
4589 5029 1.796459 GGTGCACACTACGTTTACCAG 59.204 52.381 20.43 0.00 33.23 4.00
4598 5038 2.679837 CAAGGATGATGGTGCACACTAC 59.320 50.000 20.43 7.35 0.00 2.73
4652 5092 8.562892 CGATGCAAAAATCTAATCCTCAATAGT 58.437 33.333 0.00 0.00 0.00 2.12
4661 5101 7.096312 GCAGGAAATCGATGCAAAAATCTAATC 60.096 37.037 0.00 0.00 39.75 1.75
4664 5104 5.125257 TGCAGGAAATCGATGCAAAAATCTA 59.875 36.000 8.13 0.00 46.31 1.98
4712 5153 6.992063 ACATTCACAGCGAAAAAGATCTAT 57.008 33.333 0.00 0.00 37.12 1.98
4727 5168 5.769662 ACAGCTTCTGGAAAATACATTCACA 59.230 36.000 0.00 0.00 35.51 3.58
4728 5169 6.259550 ACAGCTTCTGGAAAATACATTCAC 57.740 37.500 0.00 0.00 35.51 3.18
4768 5209 8.824756 TCTCTGGTGTAATATCTTAAGTCAGT 57.175 34.615 1.63 0.00 0.00 3.41
4798 5240 8.257306 CCACCTTAGCATTTACCATATTGTTTT 58.743 33.333 0.00 0.00 0.00 2.43
4801 5243 6.321181 CACCACCTTAGCATTTACCATATTGT 59.679 38.462 0.00 0.00 0.00 2.71
4802 5244 6.239008 CCACCACCTTAGCATTTACCATATTG 60.239 42.308 0.00 0.00 0.00 1.90
4803 5245 5.833131 CCACCACCTTAGCATTTACCATATT 59.167 40.000 0.00 0.00 0.00 1.28
4804 5246 5.133660 TCCACCACCTTAGCATTTACCATAT 59.866 40.000 0.00 0.00 0.00 1.78
4805 5247 4.475381 TCCACCACCTTAGCATTTACCATA 59.525 41.667 0.00 0.00 0.00 2.74
4806 5248 3.268334 TCCACCACCTTAGCATTTACCAT 59.732 43.478 0.00 0.00 0.00 3.55
4807 5249 2.645297 TCCACCACCTTAGCATTTACCA 59.355 45.455 0.00 0.00 0.00 3.25
4808 5250 3.359695 TCCACCACCTTAGCATTTACC 57.640 47.619 0.00 0.00 0.00 2.85
4809 5251 5.007682 TCTTTCCACCACCTTAGCATTTAC 58.992 41.667 0.00 0.00 0.00 2.01
4810 5252 5.013704 TCTCTTTCCACCACCTTAGCATTTA 59.986 40.000 0.00 0.00 0.00 1.40
4811 5253 4.082125 CTCTTTCCACCACCTTAGCATTT 58.918 43.478 0.00 0.00 0.00 2.32
4812 5254 3.330701 TCTCTTTCCACCACCTTAGCATT 59.669 43.478 0.00 0.00 0.00 3.56
4813 5255 2.912956 TCTCTTTCCACCACCTTAGCAT 59.087 45.455 0.00 0.00 0.00 3.79
4814 5256 2.334977 TCTCTTTCCACCACCTTAGCA 58.665 47.619 0.00 0.00 0.00 3.49
4815 5257 3.418684 TTCTCTTTCCACCACCTTAGC 57.581 47.619 0.00 0.00 0.00 3.09
4886 5328 7.870954 TGACGTTTCAAGAAATCTACACACTAT 59.129 33.333 0.00 0.00 32.36 2.12
4896 5338 7.692908 TCCAAATTTGACGTTTCAAGAAATC 57.307 32.000 19.86 0.00 42.79 2.17
4897 5339 8.387354 GTTTCCAAATTTGACGTTTCAAGAAAT 58.613 29.630 19.86 0.00 42.79 2.17
4898 5340 7.148557 GGTTTCCAAATTTGACGTTTCAAGAAA 60.149 33.333 19.86 13.01 42.79 2.52
4899 5341 6.311690 GGTTTCCAAATTTGACGTTTCAAGAA 59.688 34.615 19.86 7.99 42.79 2.52
4900 5342 5.808030 GGTTTCCAAATTTGACGTTTCAAGA 59.192 36.000 19.86 2.04 42.79 3.02
4901 5343 5.810074 AGGTTTCCAAATTTGACGTTTCAAG 59.190 36.000 19.86 0.00 42.79 3.02
4902 5344 5.725362 AGGTTTCCAAATTTGACGTTTCAA 58.275 33.333 19.86 0.00 40.14 2.69
4903 5345 5.331876 AGGTTTCCAAATTTGACGTTTCA 57.668 34.783 19.86 0.00 0.00 2.69
4904 5346 5.808030 TCAAGGTTTCCAAATTTGACGTTTC 59.192 36.000 19.86 4.81 0.00 2.78
4905 5347 5.579119 GTCAAGGTTTCCAAATTTGACGTTT 59.421 36.000 19.86 5.63 36.53 3.60
4906 5348 5.106442 GTCAAGGTTTCCAAATTTGACGTT 58.894 37.500 19.86 13.69 36.53 3.99
4907 5349 4.440940 GGTCAAGGTTTCCAAATTTGACGT 60.441 41.667 19.86 8.59 41.32 4.34
4908 5350 4.048504 GGTCAAGGTTTCCAAATTTGACG 58.951 43.478 19.86 3.96 41.32 4.35
4909 5351 5.017294 TGGTCAAGGTTTCCAAATTTGAC 57.983 39.130 19.86 9.61 40.59 3.18
4910 5352 4.100808 CCTGGTCAAGGTTTCCAAATTTGA 59.899 41.667 19.86 3.14 41.74 2.69
4911 5353 4.379652 CCTGGTCAAGGTTTCCAAATTTG 58.620 43.478 11.40 11.40 41.74 2.32
4912 5354 4.687901 CCTGGTCAAGGTTTCCAAATTT 57.312 40.909 0.00 0.00 41.74 1.82
4916 5358 9.553929 TTGACATATCCTGGTCAAGGTTTCCAA 62.554 40.741 3.31 0.00 46.01 3.53
4917 5359 8.172223 TTGACATATCCTGGTCAAGGTTTCCA 62.172 42.308 3.31 0.00 46.01 3.53
4918 5360 5.806406 TTGACATATCCTGGTCAAGGTTTCC 60.806 44.000 3.31 0.00 46.01 3.13
4919 5361 5.253330 TTGACATATCCTGGTCAAGGTTTC 58.747 41.667 3.31 0.00 46.01 2.78
4920 5362 5.255397 TTGACATATCCTGGTCAAGGTTT 57.745 39.130 3.31 0.00 46.01 3.27
4921 5363 4.927267 TTGACATATCCTGGTCAAGGTT 57.073 40.909 3.31 0.00 46.01 3.50
4926 5368 4.103153 GGAGGAATTGACATATCCTGGTCA 59.897 45.833 12.88 0.00 43.55 4.02
4927 5369 4.505742 GGGAGGAATTGACATATCCTGGTC 60.506 50.000 12.88 1.71 43.55 4.02
4928 5370 3.395941 GGGAGGAATTGACATATCCTGGT 59.604 47.826 12.88 0.00 43.55 4.00
4929 5371 3.654806 AGGGAGGAATTGACATATCCTGG 59.345 47.826 12.88 0.00 43.55 4.45
4930 5372 4.989875 AGGGAGGAATTGACATATCCTG 57.010 45.455 12.88 0.00 43.55 3.86
4931 5373 4.105377 CCAAGGGAGGAATTGACATATCCT 59.895 45.833 8.83 8.83 46.14 3.24
4932 5374 4.401925 CCAAGGGAGGAATTGACATATCC 58.598 47.826 0.00 0.00 0.00 2.59
4933 5375 3.823304 GCCAAGGGAGGAATTGACATATC 59.177 47.826 0.00 0.00 0.00 1.63
4934 5376 3.464833 AGCCAAGGGAGGAATTGACATAT 59.535 43.478 0.00 0.00 0.00 1.78
4935 5377 2.852449 AGCCAAGGGAGGAATTGACATA 59.148 45.455 0.00 0.00 0.00 2.29
4936 5378 1.642762 AGCCAAGGGAGGAATTGACAT 59.357 47.619 0.00 0.00 0.00 3.06
4937 5379 1.075601 AGCCAAGGGAGGAATTGACA 58.924 50.000 0.00 0.00 0.00 3.58
4938 5380 2.924421 CTAGCCAAGGGAGGAATTGAC 58.076 52.381 0.00 0.00 0.00 3.18
4939 5381 1.212935 GCTAGCCAAGGGAGGAATTGA 59.787 52.381 2.29 0.00 0.00 2.57
4940 5382 1.213926 AGCTAGCCAAGGGAGGAATTG 59.786 52.381 12.13 0.00 0.00 2.32
4941 5383 1.601248 AGCTAGCCAAGGGAGGAATT 58.399 50.000 12.13 0.00 0.00 2.17
4942 5384 2.334023 CTAGCTAGCCAAGGGAGGAAT 58.666 52.381 12.13 0.00 0.00 3.01
4943 5385 1.692762 CCTAGCTAGCCAAGGGAGGAA 60.693 57.143 21.12 0.00 0.00 3.36
4944 5386 0.105453 CCTAGCTAGCCAAGGGAGGA 60.105 60.000 21.12 0.00 0.00 3.71
4945 5387 2.446512 CCTAGCTAGCCAAGGGAGG 58.553 63.158 21.12 11.06 0.00 4.30
4949 5391 1.840635 AGAAACCCTAGCTAGCCAAGG 59.159 52.381 21.68 21.68 0.00 3.61
4950 5392 2.769095 AGAGAAACCCTAGCTAGCCAAG 59.231 50.000 15.74 9.44 0.00 3.61
4951 5393 2.766828 GAGAGAAACCCTAGCTAGCCAA 59.233 50.000 15.74 0.00 0.00 4.52
4952 5394 2.389715 GAGAGAAACCCTAGCTAGCCA 58.610 52.381 15.74 0.00 0.00 4.75
4953 5395 1.338655 CGAGAGAAACCCTAGCTAGCC 59.661 57.143 15.74 1.78 0.00 3.93
4954 5396 1.269361 GCGAGAGAAACCCTAGCTAGC 60.269 57.143 15.74 6.62 31.05 3.42
4955 5397 1.338655 GGCGAGAGAAACCCTAGCTAG 59.661 57.143 14.20 14.20 33.64 3.42
4956 5398 1.400737 GGCGAGAGAAACCCTAGCTA 58.599 55.000 0.00 0.00 33.64 3.32
4957 5399 1.668101 CGGCGAGAGAAACCCTAGCT 61.668 60.000 0.00 0.00 33.64 3.32
4958 5400 1.227002 CGGCGAGAGAAACCCTAGC 60.227 63.158 0.00 0.00 0.00 3.42
4959 5401 1.227002 GCGGCGAGAGAAACCCTAG 60.227 63.158 12.98 0.00 0.00 3.02
4960 5402 2.718073 GGCGGCGAGAGAAACCCTA 61.718 63.158 12.98 0.00 0.00 3.53
4961 5403 4.083862 GGCGGCGAGAGAAACCCT 62.084 66.667 12.98 0.00 0.00 4.34
4962 5404 3.682292 ATGGCGGCGAGAGAAACCC 62.682 63.158 12.98 0.00 0.00 4.11
4963 5405 2.125106 ATGGCGGCGAGAGAAACC 60.125 61.111 12.98 0.00 0.00 3.27
4964 5406 1.153549 AGATGGCGGCGAGAGAAAC 60.154 57.895 12.98 0.00 0.00 2.78
4965 5407 1.153568 CAGATGGCGGCGAGAGAAA 60.154 57.895 12.98 0.00 0.00 2.52
4966 5408 2.009424 CTCAGATGGCGGCGAGAGAA 62.009 60.000 12.98 0.00 0.00 2.87
4967 5409 2.440247 TCAGATGGCGGCGAGAGA 60.440 61.111 12.98 0.00 0.00 3.10
4968 5410 2.009424 TTCTCAGATGGCGGCGAGAG 62.009 60.000 12.98 12.16 35.99 3.20
4969 5411 1.604147 TTTCTCAGATGGCGGCGAGA 61.604 55.000 12.98 9.67 32.79 4.04
4970 5412 0.531532 ATTTCTCAGATGGCGGCGAG 60.532 55.000 12.98 4.79 0.00 5.03
4971 5413 0.107703 AATTTCTCAGATGGCGGCGA 60.108 50.000 12.98 0.00 0.00 5.54
4972 5414 0.734889 AAATTTCTCAGATGGCGGCG 59.265 50.000 0.51 0.51 0.00 6.46
4973 5415 2.533266 CAAAATTTCTCAGATGGCGGC 58.467 47.619 0.00 0.00 0.00 6.53
4974 5416 2.736400 GCCAAAATTTCTCAGATGGCGG 60.736 50.000 12.29 0.00 43.26 6.13
4975 5417 2.533266 GCCAAAATTTCTCAGATGGCG 58.467 47.619 12.29 0.00 43.26 5.69
4977 5419 3.131755 GGAGGCCAAAATTTCTCAGATGG 59.868 47.826 5.01 4.01 0.00 3.51
4978 5420 4.021916 AGGAGGCCAAAATTTCTCAGATG 58.978 43.478 5.01 0.00 0.00 2.90
4979 5421 4.276642 GAGGAGGCCAAAATTTCTCAGAT 58.723 43.478 5.01 0.00 0.00 2.90
4980 5422 3.690460 GAGGAGGCCAAAATTTCTCAGA 58.310 45.455 5.01 0.00 0.00 3.27
4981 5423 2.421424 CGAGGAGGCCAAAATTTCTCAG 59.579 50.000 5.01 0.00 0.00 3.35
4982 5424 2.224769 ACGAGGAGGCCAAAATTTCTCA 60.225 45.455 5.01 0.00 0.00 3.27
4983 5425 2.420372 GACGAGGAGGCCAAAATTTCTC 59.580 50.000 5.01 0.00 0.00 2.87
4984 5426 2.040412 AGACGAGGAGGCCAAAATTTCT 59.960 45.455 5.01 0.00 0.00 2.52
4985 5427 2.420372 GAGACGAGGAGGCCAAAATTTC 59.580 50.000 5.01 0.00 0.00 2.17
4986 5428 2.437413 GAGACGAGGAGGCCAAAATTT 58.563 47.619 5.01 0.00 0.00 1.82
4987 5429 1.340114 GGAGACGAGGAGGCCAAAATT 60.340 52.381 5.01 0.00 0.00 1.82
4988 5430 0.253327 GGAGACGAGGAGGCCAAAAT 59.747 55.000 5.01 0.00 0.00 1.82
4989 5431 1.677552 GGAGACGAGGAGGCCAAAA 59.322 57.895 5.01 0.00 0.00 2.44
4990 5432 3.388841 GGAGACGAGGAGGCCAAA 58.611 61.111 5.01 0.00 0.00 3.28
5003 5445 1.900351 CCAAGATGGCAGTCGGAGA 59.100 57.895 0.00 0.00 0.00 3.71
5004 5446 4.528674 CCAAGATGGCAGTCGGAG 57.471 61.111 0.00 0.00 0.00 4.63
5013 5455 2.110967 CCACTCAGCGCCAAGATGG 61.111 63.158 13.10 11.97 41.55 3.51
5014 5456 1.376424 ACCACTCAGCGCCAAGATG 60.376 57.895 13.10 0.19 37.65 2.90
5015 5457 1.376424 CACCACTCAGCGCCAAGAT 60.376 57.895 13.10 0.00 0.00 2.40
5016 5458 2.031012 CACCACTCAGCGCCAAGA 59.969 61.111 13.10 4.25 0.00 3.02
5017 5459 3.052082 CCACCACTCAGCGCCAAG 61.052 66.667 2.29 4.06 0.00 3.61
5018 5460 4.641645 CCCACCACTCAGCGCCAA 62.642 66.667 2.29 0.00 0.00 4.52
5022 5464 4.394712 GTCCCCCACCACTCAGCG 62.395 72.222 0.00 0.00 0.00 5.18
5023 5465 4.035102 GGTCCCCCACCACTCAGC 62.035 72.222 0.00 0.00 45.98 4.26
5031 5473 0.704664 AGATTTCCAAGGTCCCCCAC 59.295 55.000 0.00 0.00 0.00 4.61
5032 5474 0.999712 GAGATTTCCAAGGTCCCCCA 59.000 55.000 0.00 0.00 0.00 4.96
5033 5475 1.299939 AGAGATTTCCAAGGTCCCCC 58.700 55.000 0.00 0.00 0.00 5.40
5034 5476 3.459969 ACATAGAGATTTCCAAGGTCCCC 59.540 47.826 0.00 0.00 0.00 4.81
5035 5477 4.779993 ACATAGAGATTTCCAAGGTCCC 57.220 45.455 0.00 0.00 0.00 4.46
5036 5478 7.468141 AAAAACATAGAGATTTCCAAGGTCC 57.532 36.000 0.00 0.00 0.00 4.46
5057 5499 7.936496 TGATGATCACTAGGCATTACAAAAA 57.064 32.000 0.00 0.00 0.00 1.94
5058 5500 9.276590 CTATGATGATCACTAGGCATTACAAAA 57.723 33.333 0.00 0.00 0.00 2.44
5059 5501 8.432013 ACTATGATGATCACTAGGCATTACAAA 58.568 33.333 0.00 0.00 0.00 2.83
5060 5502 7.966812 ACTATGATGATCACTAGGCATTACAA 58.033 34.615 0.00 0.00 0.00 2.41
5061 5503 7.544804 ACTATGATGATCACTAGGCATTACA 57.455 36.000 0.00 0.00 0.00 2.41
5062 5504 8.310382 AGAACTATGATGATCACTAGGCATTAC 58.690 37.037 0.00 0.00 0.00 1.89
5063 5505 8.309656 CAGAACTATGATGATCACTAGGCATTA 58.690 37.037 0.00 0.00 0.00 1.90
5064 5506 7.160049 CAGAACTATGATGATCACTAGGCATT 58.840 38.462 0.00 0.00 0.00 3.56
5065 5507 6.269538 ACAGAACTATGATGATCACTAGGCAT 59.730 38.462 0.00 0.02 0.00 4.40
5066 5508 5.600069 ACAGAACTATGATGATCACTAGGCA 59.400 40.000 0.00 0.00 0.00 4.75
5067 5509 5.925397 CACAGAACTATGATGATCACTAGGC 59.075 44.000 0.00 0.00 0.00 3.93
5068 5510 7.230309 TCTCACAGAACTATGATGATCACTAGG 59.770 40.741 0.00 0.00 0.00 3.02
5069 5511 8.164058 TCTCACAGAACTATGATGATCACTAG 57.836 38.462 0.00 4.09 0.00 2.57
5070 5512 8.525290 TTCTCACAGAACTATGATGATCACTA 57.475 34.615 0.00 0.00 0.00 2.74
5071 5513 7.415592 TTCTCACAGAACTATGATGATCACT 57.584 36.000 0.00 0.00 0.00 3.41
5072 5514 8.484641 TTTTCTCACAGAACTATGATGATCAC 57.515 34.615 0.00 0.00 33.26 3.06
5073 5515 8.939929 GTTTTTCTCACAGAACTATGATGATCA 58.060 33.333 0.00 0.00 33.26 2.92
5074 5516 8.939929 TGTTTTTCTCACAGAACTATGATGATC 58.060 33.333 0.00 0.00 33.26 2.92
5075 5517 8.853077 TGTTTTTCTCACAGAACTATGATGAT 57.147 30.769 0.00 0.00 33.26 2.45
5076 5518 8.675705 TTGTTTTTCTCACAGAACTATGATGA 57.324 30.769 0.00 0.00 33.26 2.92
5077 5519 9.903682 AATTGTTTTTCTCACAGAACTATGATG 57.096 29.630 0.00 0.00 33.26 3.07
5079 5521 9.342308 AGAATTGTTTTTCTCACAGAACTATGA 57.658 29.630 0.00 0.00 33.26 2.15
5080 5522 9.390795 CAGAATTGTTTTTCTCACAGAACTATG 57.609 33.333 0.00 0.00 33.26 2.23
5081 5523 9.125026 ACAGAATTGTTTTTCTCACAGAACTAT 57.875 29.630 0.00 0.00 31.09 2.12
5082 5524 8.506168 ACAGAATTGTTTTTCTCACAGAACTA 57.494 30.769 0.00 0.00 31.09 2.24
5083 5525 7.396540 ACAGAATTGTTTTTCTCACAGAACT 57.603 32.000 0.00 0.00 31.09 3.01
5098 5540 4.685924 CACTGCCAAAAGAACAGAATTGT 58.314 39.130 0.00 0.00 39.87 2.71
5099 5541 3.492011 GCACTGCCAAAAGAACAGAATTG 59.508 43.478 0.00 0.00 35.38 2.32
5100 5542 3.721035 GCACTGCCAAAAGAACAGAATT 58.279 40.909 0.00 0.00 35.38 2.17
5101 5543 3.375782 GCACTGCCAAAAGAACAGAAT 57.624 42.857 0.00 0.00 35.38 2.40
5102 5544 2.869233 GCACTGCCAAAAGAACAGAA 57.131 45.000 0.00 0.00 35.38 3.02
5115 5557 1.208052 TCTCTAACCTCATGGCACTGC 59.792 52.381 0.00 0.00 36.63 4.40
5116 5558 3.616956 TTCTCTAACCTCATGGCACTG 57.383 47.619 0.00 0.00 36.63 3.66
5117 5559 4.851639 AATTCTCTAACCTCATGGCACT 57.148 40.909 0.00 0.00 36.63 4.40
5118 5560 5.904362 AAAATTCTCTAACCTCATGGCAC 57.096 39.130 0.00 0.00 36.63 5.01
5119 5561 7.118723 ACATAAAATTCTCTAACCTCATGGCA 58.881 34.615 0.00 0.00 36.63 4.92
5120 5562 7.255277 GGACATAAAATTCTCTAACCTCATGGC 60.255 40.741 0.00 0.00 36.63 4.40
5121 5563 7.995488 AGGACATAAAATTCTCTAACCTCATGG 59.005 37.037 0.00 0.00 39.83 3.66
5122 5564 8.970859 AGGACATAAAATTCTCTAACCTCATG 57.029 34.615 0.00 0.00 0.00 3.07
5123 5565 9.401058 CAAGGACATAAAATTCTCTAACCTCAT 57.599 33.333 0.00 0.00 0.00 2.90
5124 5566 7.336931 GCAAGGACATAAAATTCTCTAACCTCA 59.663 37.037 0.00 0.00 0.00 3.86
5125 5567 7.336931 TGCAAGGACATAAAATTCTCTAACCTC 59.663 37.037 0.00 0.00 0.00 3.85
5126 5568 7.175104 TGCAAGGACATAAAATTCTCTAACCT 58.825 34.615 0.00 0.00 0.00 3.50
5127 5569 7.336931 TCTGCAAGGACATAAAATTCTCTAACC 59.663 37.037 0.00 0.00 0.00 2.85
5128 5570 8.268850 TCTGCAAGGACATAAAATTCTCTAAC 57.731 34.615 0.00 0.00 0.00 2.34
5129 5571 9.466497 AATCTGCAAGGACATAAAATTCTCTAA 57.534 29.630 0.00 0.00 0.00 2.10
5130 5572 9.113838 GAATCTGCAAGGACATAAAATTCTCTA 57.886 33.333 0.00 0.00 0.00 2.43
5131 5573 7.613022 TGAATCTGCAAGGACATAAAATTCTCT 59.387 33.333 0.00 0.00 0.00 3.10
5132 5574 7.765307 TGAATCTGCAAGGACATAAAATTCTC 58.235 34.615 0.00 0.00 0.00 2.87
5133 5575 7.707624 TGAATCTGCAAGGACATAAAATTCT 57.292 32.000 0.00 0.00 0.00 2.40
5134 5576 8.937634 ATTGAATCTGCAAGGACATAAAATTC 57.062 30.769 0.00 0.00 0.00 2.17
5139 5581 8.344831 CGAATAATTGAATCTGCAAGGACATAA 58.655 33.333 0.00 0.00 0.00 1.90
5140 5582 7.041167 CCGAATAATTGAATCTGCAAGGACATA 60.041 37.037 0.00 0.00 0.00 2.29
5141 5583 6.238842 CCGAATAATTGAATCTGCAAGGACAT 60.239 38.462 0.00 0.00 0.00 3.06
5142 5584 5.066375 CCGAATAATTGAATCTGCAAGGACA 59.934 40.000 0.00 0.00 0.00 4.02
5143 5585 5.296780 TCCGAATAATTGAATCTGCAAGGAC 59.703 40.000 0.00 0.00 0.00 3.85
5144 5586 5.436175 TCCGAATAATTGAATCTGCAAGGA 58.564 37.500 0.00 0.00 0.00 3.36
5145 5587 5.756195 TCCGAATAATTGAATCTGCAAGG 57.244 39.130 0.00 0.00 0.00 3.61
5146 5588 7.041576 TCAGATCCGAATAATTGAATCTGCAAG 60.042 37.037 5.50 0.00 35.54 4.01
5147 5589 6.767423 TCAGATCCGAATAATTGAATCTGCAA 59.233 34.615 5.50 0.00 35.54 4.08
5148 5590 6.203530 GTCAGATCCGAATAATTGAATCTGCA 59.796 38.462 5.50 0.00 35.54 4.41
5149 5591 6.597614 GTCAGATCCGAATAATTGAATCTGC 58.402 40.000 5.50 0.00 35.54 4.26
5150 5592 6.642540 TCGTCAGATCCGAATAATTGAATCTG 59.357 38.462 0.00 0.00 36.54 2.90
5151 5593 6.749139 TCGTCAGATCCGAATAATTGAATCT 58.251 36.000 0.00 0.00 0.00 2.40
5152 5594 6.642950 ACTCGTCAGATCCGAATAATTGAATC 59.357 38.462 0.00 0.00 33.34 2.52
5153 5595 6.516718 ACTCGTCAGATCCGAATAATTGAAT 58.483 36.000 0.00 0.00 33.34 2.57
5154 5596 5.902681 ACTCGTCAGATCCGAATAATTGAA 58.097 37.500 0.00 0.00 33.34 2.69
5155 5597 5.515797 ACTCGTCAGATCCGAATAATTGA 57.484 39.130 0.00 0.00 33.34 2.57
5156 5598 6.589830 AAACTCGTCAGATCCGAATAATTG 57.410 37.500 0.00 0.00 33.34 2.32
5157 5599 7.926555 ACATAAACTCGTCAGATCCGAATAATT 59.073 33.333 0.00 0.00 33.34 1.40
5158 5600 7.434492 ACATAAACTCGTCAGATCCGAATAAT 58.566 34.615 0.00 0.00 33.34 1.28
5159 5601 6.802608 ACATAAACTCGTCAGATCCGAATAA 58.197 36.000 0.00 0.00 33.34 1.40
5160 5602 6.387041 ACATAAACTCGTCAGATCCGAATA 57.613 37.500 0.00 0.00 33.34 1.75
5161 5603 5.263968 ACATAAACTCGTCAGATCCGAAT 57.736 39.130 0.00 0.00 33.34 3.34
5162 5604 4.713824 ACATAAACTCGTCAGATCCGAA 57.286 40.909 0.00 0.00 33.34 4.30
5163 5605 4.082408 ACAACATAAACTCGTCAGATCCGA 60.082 41.667 0.00 0.00 0.00 4.55
5164 5606 4.174009 ACAACATAAACTCGTCAGATCCG 58.826 43.478 0.00 0.00 0.00 4.18
5165 5607 4.265556 CGACAACATAAACTCGTCAGATCC 59.734 45.833 0.00 0.00 0.00 3.36
5166 5608 4.857588 ACGACAACATAAACTCGTCAGATC 59.142 41.667 0.00 0.00 34.30 2.75
5167 5609 4.621460 CACGACAACATAAACTCGTCAGAT 59.379 41.667 0.00 0.00 37.26 2.90
5168 5610 3.978855 CACGACAACATAAACTCGTCAGA 59.021 43.478 0.00 0.00 37.26 3.27
5169 5611 3.421826 GCACGACAACATAAACTCGTCAG 60.422 47.826 0.00 0.00 37.26 3.51
5170 5612 2.473609 GCACGACAACATAAACTCGTCA 59.526 45.455 0.00 0.00 37.26 4.35
5171 5613 2.159881 GGCACGACAACATAAACTCGTC 60.160 50.000 0.00 0.00 37.26 4.20
5172 5614 1.796459 GGCACGACAACATAAACTCGT 59.204 47.619 0.00 0.00 39.90 4.18
5173 5615 1.795872 TGGCACGACAACATAAACTCG 59.204 47.619 0.00 0.00 0.00 4.18
5174 5616 3.810373 CTTGGCACGACAACATAAACTC 58.190 45.455 0.00 0.00 0.00 3.01
5175 5617 2.031157 GCTTGGCACGACAACATAAACT 60.031 45.455 0.00 0.00 0.00 2.66
5176 5618 2.031157 AGCTTGGCACGACAACATAAAC 60.031 45.455 0.00 0.00 0.00 2.01
5177 5619 2.226330 AGCTTGGCACGACAACATAAA 58.774 42.857 0.00 0.00 0.00 1.40
5178 5620 1.890876 AGCTTGGCACGACAACATAA 58.109 45.000 0.00 0.00 0.00 1.90
5179 5621 1.890876 AAGCTTGGCACGACAACATA 58.109 45.000 0.00 0.00 0.00 2.29
5180 5622 1.032014 AAAGCTTGGCACGACAACAT 58.968 45.000 0.00 0.00 0.00 2.71
5181 5623 0.814457 AAAAGCTTGGCACGACAACA 59.186 45.000 0.00 0.00 0.00 3.33
5182 5624 1.921243 AAAAAGCTTGGCACGACAAC 58.079 45.000 0.00 0.00 0.00 3.32
5198 5640 7.411486 TCCACCAAGAATCAAGTAACAAAAA 57.589 32.000 0.00 0.00 0.00 1.94
5199 5641 6.040391 CCTCCACCAAGAATCAAGTAACAAAA 59.960 38.462 0.00 0.00 0.00 2.44
5200 5642 5.534654 CCTCCACCAAGAATCAAGTAACAAA 59.465 40.000 0.00 0.00 0.00 2.83
5201 5643 5.070001 CCTCCACCAAGAATCAAGTAACAA 58.930 41.667 0.00 0.00 0.00 2.83
5202 5644 4.104102 ACCTCCACCAAGAATCAAGTAACA 59.896 41.667 0.00 0.00 0.00 2.41
5203 5645 4.455877 CACCTCCACCAAGAATCAAGTAAC 59.544 45.833 0.00 0.00 0.00 2.50
5204 5646 4.349636 TCACCTCCACCAAGAATCAAGTAA 59.650 41.667 0.00 0.00 0.00 2.24
5205 5647 3.907474 TCACCTCCACCAAGAATCAAGTA 59.093 43.478 0.00 0.00 0.00 2.24
5206 5648 2.711009 TCACCTCCACCAAGAATCAAGT 59.289 45.455 0.00 0.00 0.00 3.16
5207 5649 3.423539 TCACCTCCACCAAGAATCAAG 57.576 47.619 0.00 0.00 0.00 3.02
5208 5650 3.874383 TTCACCTCCACCAAGAATCAA 57.126 42.857 0.00 0.00 0.00 2.57
5209 5651 3.874383 TTTCACCTCCACCAAGAATCA 57.126 42.857 0.00 0.00 0.00 2.57
5210 5652 5.728637 AAATTTCACCTCCACCAAGAATC 57.271 39.130 0.00 0.00 0.00 2.52
5211 5653 6.099557 TGAAAAATTTCACCTCCACCAAGAAT 59.900 34.615 4.52 0.00 41.88 2.40
5212 5654 5.423610 TGAAAAATTTCACCTCCACCAAGAA 59.576 36.000 4.52 0.00 41.88 2.52
5213 5655 4.959210 TGAAAAATTTCACCTCCACCAAGA 59.041 37.500 4.52 0.00 41.88 3.02
5214 5656 5.275067 TGAAAAATTTCACCTCCACCAAG 57.725 39.130 4.52 0.00 41.88 3.61
5226 5668 8.537049 TCCACATGATGTTGATGAAAAATTTC 57.463 30.769 0.00 0.00 37.69 2.17
5227 5669 8.369424 TCTCCACATGATGTTGATGAAAAATTT 58.631 29.630 0.00 0.00 0.00 1.82
5228 5670 7.898918 TCTCCACATGATGTTGATGAAAAATT 58.101 30.769 0.00 0.00 0.00 1.82
5229 5671 7.470935 TCTCCACATGATGTTGATGAAAAAT 57.529 32.000 0.00 0.00 0.00 1.82
5230 5672 6.897706 TCTCCACATGATGTTGATGAAAAA 57.102 33.333 0.00 0.00 0.00 1.94
5231 5673 8.756486 ATATCTCCACATGATGTTGATGAAAA 57.244 30.769 0.00 3.30 0.00 2.29
5232 5674 9.498176 CTATATCTCCACATGATGTTGATGAAA 57.502 33.333 0.00 0.00 0.00 2.69
5233 5675 8.654094 ACTATATCTCCACATGATGTTGATGAA 58.346 33.333 0.00 0.00 0.00 2.57
5234 5676 8.092687 CACTATATCTCCACATGATGTTGATGA 58.907 37.037 0.00 7.89 0.00 2.92
5235 5677 8.092687 TCACTATATCTCCACATGATGTTGATG 58.907 37.037 0.00 3.09 0.00 3.07
5236 5678 8.093307 GTCACTATATCTCCACATGATGTTGAT 58.907 37.037 0.00 3.28 0.00 2.57
5237 5679 7.288621 AGTCACTATATCTCCACATGATGTTGA 59.711 37.037 0.00 0.00 0.00 3.18
5238 5680 7.440198 AGTCACTATATCTCCACATGATGTTG 58.560 38.462 0.00 0.00 0.00 3.33
5239 5681 7.522889 CGAGTCACTATATCTCCACATGATGTT 60.523 40.741 0.00 0.00 0.00 2.71
5240 5682 6.072230 CGAGTCACTATATCTCCACATGATGT 60.072 42.308 0.00 0.00 0.00 3.06
5241 5683 6.150140 TCGAGTCACTATATCTCCACATGATG 59.850 42.308 0.00 0.00 0.00 3.07
5242 5684 6.150307 GTCGAGTCACTATATCTCCACATGAT 59.850 42.308 0.00 0.00 0.00 2.45
5243 5685 5.470437 GTCGAGTCACTATATCTCCACATGA 59.530 44.000 0.00 0.00 0.00 3.07
5244 5686 5.615764 CGTCGAGTCACTATATCTCCACATG 60.616 48.000 0.00 0.00 0.00 3.21
5245 5687 4.452795 CGTCGAGTCACTATATCTCCACAT 59.547 45.833 0.00 0.00 0.00 3.21
5246 5688 3.808174 CGTCGAGTCACTATATCTCCACA 59.192 47.826 0.00 0.00 0.00 4.17
5247 5689 3.186817 CCGTCGAGTCACTATATCTCCAC 59.813 52.174 0.00 0.00 0.00 4.02
5248 5690 3.400255 CCGTCGAGTCACTATATCTCCA 58.600 50.000 0.00 0.00 0.00 3.86
5249 5691 2.160022 GCCGTCGAGTCACTATATCTCC 59.840 54.545 0.00 0.00 0.00 3.71
5250 5692 2.160022 GGCCGTCGAGTCACTATATCTC 59.840 54.545 0.00 0.00 0.00 2.75
5251 5693 2.152830 GGCCGTCGAGTCACTATATCT 58.847 52.381 0.00 0.00 0.00 1.98
5252 5694 2.095668 CAGGCCGTCGAGTCACTATATC 60.096 54.545 0.00 0.00 0.00 1.63
5253 5695 1.880675 CAGGCCGTCGAGTCACTATAT 59.119 52.381 0.00 0.00 0.00 0.86
5254 5696 1.306148 CAGGCCGTCGAGTCACTATA 58.694 55.000 0.00 0.00 0.00 1.31
5255 5697 2.005960 GCAGGCCGTCGAGTCACTAT 62.006 60.000 0.00 0.00 0.00 2.12
5256 5698 2.697761 GCAGGCCGTCGAGTCACTA 61.698 63.158 0.00 0.00 0.00 2.74
5257 5699 4.057428 GCAGGCCGTCGAGTCACT 62.057 66.667 0.00 0.00 0.00 3.41
5258 5700 4.357947 TGCAGGCCGTCGAGTCAC 62.358 66.667 0.00 0.00 0.00 3.67
5259 5701 4.357947 GTGCAGGCCGTCGAGTCA 62.358 66.667 0.00 0.00 0.00 3.41
5260 5702 2.209064 TAAGTGCAGGCCGTCGAGTC 62.209 60.000 0.00 0.00 0.00 3.36
5261 5703 1.605058 ATAAGTGCAGGCCGTCGAGT 61.605 55.000 0.00 0.00 0.00 4.18
5262 5704 0.384309 TATAAGTGCAGGCCGTCGAG 59.616 55.000 0.00 0.00 0.00 4.04
5263 5705 0.101759 GTATAAGTGCAGGCCGTCGA 59.898 55.000 0.00 0.00 0.00 4.20
5264 5706 1.206745 CGTATAAGTGCAGGCCGTCG 61.207 60.000 0.00 0.00 0.00 5.12
5265 5707 0.874607 CCGTATAAGTGCAGGCCGTC 60.875 60.000 0.00 0.00 0.00 4.79
5266 5708 1.143183 CCGTATAAGTGCAGGCCGT 59.857 57.895 0.00 0.00 0.00 5.68
5267 5709 0.179094 TTCCGTATAAGTGCAGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
5268 5710 2.143925 GATTCCGTATAAGTGCAGGCC 58.856 52.381 0.00 0.00 0.00 5.19
5269 5711 2.833794 TGATTCCGTATAAGTGCAGGC 58.166 47.619 0.00 0.00 0.00 4.85
5270 5712 3.675225 CGATGATTCCGTATAAGTGCAGG 59.325 47.826 0.00 0.00 0.00 4.85
5271 5713 4.299155 ACGATGATTCCGTATAAGTGCAG 58.701 43.478 0.00 0.00 38.61 4.41
5272 5714 4.295870 GACGATGATTCCGTATAAGTGCA 58.704 43.478 0.00 0.00 40.67 4.57
5273 5715 3.361053 CGACGATGATTCCGTATAAGTGC 59.639 47.826 0.00 0.00 40.67 4.40
5274 5716 3.912563 CCGACGATGATTCCGTATAAGTG 59.087 47.826 0.00 0.00 40.67 3.16
5275 5717 3.611057 GCCGACGATGATTCCGTATAAGT 60.611 47.826 0.00 0.00 40.67 2.24
5276 5718 2.915463 GCCGACGATGATTCCGTATAAG 59.085 50.000 0.00 0.00 40.67 1.73
5277 5719 2.352030 GGCCGACGATGATTCCGTATAA 60.352 50.000 0.00 0.00 40.67 0.98
5278 5720 1.200716 GGCCGACGATGATTCCGTATA 59.799 52.381 0.00 0.00 40.67 1.47
5279 5721 0.038526 GGCCGACGATGATTCCGTAT 60.039 55.000 0.00 0.00 40.67 3.06
5280 5722 1.361271 GGCCGACGATGATTCCGTA 59.639 57.895 0.00 0.00 40.67 4.02
5281 5723 2.106332 GGCCGACGATGATTCCGT 59.894 61.111 0.00 0.00 43.56 4.69
5282 5724 2.661866 GGGCCGACGATGATTCCG 60.662 66.667 0.00 0.00 0.00 4.30
5283 5725 1.153249 TTGGGCCGACGATGATTCC 60.153 57.895 0.00 0.00 0.00 3.01
5284 5726 0.462047 ACTTGGGCCGACGATGATTC 60.462 55.000 0.00 0.00 0.00 2.52
5285 5727 0.828022 TACTTGGGCCGACGATGATT 59.172 50.000 0.00 0.00 0.00 2.57
5286 5728 0.104304 GTACTTGGGCCGACGATGAT 59.896 55.000 0.00 0.00 0.00 2.45
5287 5729 1.514087 GTACTTGGGCCGACGATGA 59.486 57.895 0.00 0.00 0.00 2.92
5288 5730 1.876714 CGTACTTGGGCCGACGATG 60.877 63.158 12.93 0.00 37.50 3.84
5289 5731 1.880819 AACGTACTTGGGCCGACGAT 61.881 55.000 21.74 10.90 38.63 3.73
5290 5732 2.476534 GAACGTACTTGGGCCGACGA 62.477 60.000 21.74 0.00 38.63 4.20
5291 5733 2.048877 AACGTACTTGGGCCGACG 60.049 61.111 15.65 15.65 41.02 5.12
5292 5734 0.390735 ATGAACGTACTTGGGCCGAC 60.391 55.000 0.00 0.00 0.00 4.79
5293 5735 0.322322 AATGAACGTACTTGGGCCGA 59.678 50.000 0.00 0.00 0.00 5.54
5294 5736 2.012937 TAATGAACGTACTTGGGCCG 57.987 50.000 0.00 0.00 0.00 6.13
5295 5737 3.537580 TGATAATGAACGTACTTGGGCC 58.462 45.455 0.00 0.00 0.00 5.80
5296 5738 4.035208 CCTTGATAATGAACGTACTTGGGC 59.965 45.833 0.00 0.00 0.00 5.36
5297 5739 5.183228 ACCTTGATAATGAACGTACTTGGG 58.817 41.667 0.00 0.00 0.00 4.12
5298 5740 6.183360 GGAACCTTGATAATGAACGTACTTGG 60.183 42.308 0.00 0.00 0.00 3.61
5299 5741 6.772078 GGAACCTTGATAATGAACGTACTTG 58.228 40.000 0.00 0.00 0.00 3.16
5300 5742 6.980051 GGAACCTTGATAATGAACGTACTT 57.020 37.500 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.