Multiple sequence alignment - TraesCS5A01G246300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G246300 chr5A 100.000 2972 0 0 1 2972 459678084 459675113 0.000000e+00 5489.0
1 TraesCS5A01G246300 chr5A 81.947 986 144 30 1004 1970 510078692 510077722 0.000000e+00 804.0
2 TraesCS5A01G246300 chr5D 94.849 2388 78 21 599 2972 358825978 358823622 0.000000e+00 3687.0
3 TraesCS5A01G246300 chr5D 82.706 983 136 28 1004 1970 403415468 403414504 0.000000e+00 843.0
4 TraesCS5A01G246300 chr5B 94.810 2389 71 20 599 2972 423901916 423899566 0.000000e+00 3675.0
5 TraesCS5A01G246300 chr5B 86.450 524 63 5 1 519 492107501 492108021 4.300000e-158 568.0
6 TraesCS5A01G246300 chr5B 84.892 556 71 10 12 560 446012795 446012246 1.560000e-152 549.0
7 TraesCS5A01G246300 chr2D 85.989 571 65 11 1 560 575827429 575827995 5.480000e-167 597.0
8 TraesCS5A01G246300 chr6B 84.734 583 76 9 1 575 678533286 678533863 3.320000e-159 571.0
9 TraesCS5A01G246300 chr7B 86.476 525 62 6 1 519 707963450 707963971 4.300000e-158 568.0
10 TraesCS5A01G246300 chr3B 84.549 576 80 6 8 578 307223709 307223138 2.000000e-156 562.0
11 TraesCS5A01G246300 chr3B 83.798 574 83 7 1 567 818160816 818160246 1.210000e-148 536.0
12 TraesCS5A01G246300 chr3B 90.476 63 4 1 521 581 655863714 655863652 6.830000e-12 82.4
13 TraesCS5A01G246300 chr4A 84.402 577 81 6 8 578 649120169 649119596 2.590000e-155 558.0
14 TraesCS5A01G246300 chr4B 86.095 525 63 7 1 519 562615512 562616032 9.310000e-155 556.0
15 TraesCS5A01G246300 chr2B 83.472 599 72 13 1 575 421077532 421078127 1.570000e-147 532.0
16 TraesCS5A01G246300 chr2B 82.943 598 76 12 1 575 421080152 421080746 1.580000e-142 516.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G246300 chr5A 459675113 459678084 2971 True 5489 5489 100.0000 1 2972 1 chr5A.!!$R1 2971
1 TraesCS5A01G246300 chr5A 510077722 510078692 970 True 804 804 81.9470 1004 1970 1 chr5A.!!$R2 966
2 TraesCS5A01G246300 chr5D 358823622 358825978 2356 True 3687 3687 94.8490 599 2972 1 chr5D.!!$R1 2373
3 TraesCS5A01G246300 chr5D 403414504 403415468 964 True 843 843 82.7060 1004 1970 1 chr5D.!!$R2 966
4 TraesCS5A01G246300 chr5B 423899566 423901916 2350 True 3675 3675 94.8100 599 2972 1 chr5B.!!$R1 2373
5 TraesCS5A01G246300 chr5B 492107501 492108021 520 False 568 568 86.4500 1 519 1 chr5B.!!$F1 518
6 TraesCS5A01G246300 chr5B 446012246 446012795 549 True 549 549 84.8920 12 560 1 chr5B.!!$R2 548
7 TraesCS5A01G246300 chr2D 575827429 575827995 566 False 597 597 85.9890 1 560 1 chr2D.!!$F1 559
8 TraesCS5A01G246300 chr6B 678533286 678533863 577 False 571 571 84.7340 1 575 1 chr6B.!!$F1 574
9 TraesCS5A01G246300 chr7B 707963450 707963971 521 False 568 568 86.4760 1 519 1 chr7B.!!$F1 518
10 TraesCS5A01G246300 chr3B 307223138 307223709 571 True 562 562 84.5490 8 578 1 chr3B.!!$R1 570
11 TraesCS5A01G246300 chr3B 818160246 818160816 570 True 536 536 83.7980 1 567 1 chr3B.!!$R3 566
12 TraesCS5A01G246300 chr4A 649119596 649120169 573 True 558 558 84.4020 8 578 1 chr4A.!!$R1 570
13 TraesCS5A01G246300 chr4B 562615512 562616032 520 False 556 556 86.0950 1 519 1 chr4B.!!$F1 518
14 TraesCS5A01G246300 chr2B 421077532 421080746 3214 False 524 532 83.2075 1 575 2 chr2B.!!$F1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 126 0.108585 ACACCTGCCATTCACGAACT 59.891 50.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 4680 0.763035 ATGGGGTACGCTACATTCCC 59.237 55.0 10.04 1.24 43.8 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 58 1.362717 CCCGGACACGCTATCGAAT 59.637 57.895 0.73 0.00 39.22 3.34
85 90 1.139058 GCATCCCCACACGACTAAGAT 59.861 52.381 0.00 0.00 0.00 2.40
89 94 0.249120 CCCACACGACTAAGATGCCA 59.751 55.000 0.00 0.00 0.00 4.92
95 100 2.166459 CACGACTAAGATGCCAGAGGAA 59.834 50.000 0.00 0.00 0.00 3.36
121 126 0.108585 ACACCTGCCATTCACGAACT 59.891 50.000 0.00 0.00 0.00 3.01
127 132 2.333926 TGCCATTCACGAACTACGAAG 58.666 47.619 0.00 0.00 45.77 3.79
163 168 0.933097 CATCTTTCAGATGTCGCCGG 59.067 55.000 0.00 0.00 45.33 6.13
180 186 0.603707 CGGTGCAGACCACAATCTGT 60.604 55.000 4.80 0.00 46.65 3.41
230 236 2.664851 CCGACGCTGGAGCAAACA 60.665 61.111 0.00 0.00 42.21 2.83
240 246 1.574428 GAGCAAACACCGTCGCAAT 59.426 52.632 0.00 0.00 0.00 3.56
286 292 2.278206 CGAGGATGTCGTCGCTGG 60.278 66.667 11.46 0.00 45.15 4.85
309 315 1.466167 CGTCATCCTTGCTTGAACAGG 59.534 52.381 0.00 0.00 0.00 4.00
311 317 0.529378 CATCCTTGCTTGAACAGGCC 59.471 55.000 0.00 0.00 31.78 5.19
332 338 4.074970 CCGATTTCCAAATCTATCCCCAG 58.925 47.826 9.75 0.00 41.99 4.45
348 354 1.043816 CCAGCCATAGGACTGATCGT 58.956 55.000 0.00 0.00 35.90 3.73
370 376 5.163683 CGTCTTGTCGGAGTAGGATCTAAAA 60.164 44.000 0.00 0.00 0.00 1.52
395 401 2.554806 TTATTCAGCGTCGTCATCGT 57.445 45.000 0.00 0.00 38.33 3.73
401 407 1.582937 GCGTCGTCATCGTCGTCAT 60.583 57.895 8.59 0.00 46.29 3.06
426 432 4.866508 AGTCAAGACGATGAACAACCTA 57.133 40.909 0.00 0.00 36.20 3.08
427 433 5.407407 AGTCAAGACGATGAACAACCTAT 57.593 39.130 0.00 0.00 36.20 2.57
428 434 6.525578 AGTCAAGACGATGAACAACCTATA 57.474 37.500 0.00 0.00 36.20 1.31
495 503 0.325671 ACGACCCCCTCATCACTGAT 60.326 55.000 0.00 0.00 0.00 2.90
578 3227 0.732880 CGAGCGGAAGAAAGAAGCGA 60.733 55.000 0.00 0.00 0.00 4.93
579 3228 1.429463 GAGCGGAAGAAAGAAGCGAA 58.571 50.000 0.00 0.00 0.00 4.70
580 3229 1.127029 GAGCGGAAGAAAGAAGCGAAC 59.873 52.381 0.00 0.00 0.00 3.95
581 3230 0.865769 GCGGAAGAAAGAAGCGAACA 59.134 50.000 0.00 0.00 0.00 3.18
582 3231 1.398578 GCGGAAGAAAGAAGCGAACAC 60.399 52.381 0.00 0.00 0.00 3.32
583 3232 1.136611 CGGAAGAAAGAAGCGAACACG 60.137 52.381 0.00 0.00 0.00 4.49
584 3233 2.132762 GGAAGAAAGAAGCGAACACGA 58.867 47.619 0.00 0.00 0.00 4.35
585 3234 2.155924 GGAAGAAAGAAGCGAACACGAG 59.844 50.000 0.00 0.00 0.00 4.18
586 3235 2.510768 AGAAAGAAGCGAACACGAGT 57.489 45.000 0.00 0.00 0.00 4.18
587 3236 3.637998 AGAAAGAAGCGAACACGAGTA 57.362 42.857 0.00 0.00 0.00 2.59
588 3237 3.566523 AGAAAGAAGCGAACACGAGTAG 58.433 45.455 0.00 0.00 0.00 2.57
589 3238 2.349297 AAGAAGCGAACACGAGTAGG 57.651 50.000 0.00 0.00 0.00 3.18
590 3239 1.245732 AGAAGCGAACACGAGTAGGT 58.754 50.000 0.00 0.00 0.00 3.08
591 3240 1.612463 AGAAGCGAACACGAGTAGGTT 59.388 47.619 5.76 5.76 0.00 3.50
592 3241 1.719780 GAAGCGAACACGAGTAGGTTG 59.280 52.381 9.64 0.00 0.00 3.77
593 3242 0.672342 AGCGAACACGAGTAGGTTGT 59.328 50.000 0.00 0.00 0.00 3.32
594 3243 1.058404 GCGAACACGAGTAGGTTGTC 58.942 55.000 0.00 0.00 0.00 3.18
595 3244 1.601162 GCGAACACGAGTAGGTTGTCA 60.601 52.381 0.00 0.00 0.00 3.58
596 3245 2.925306 GCGAACACGAGTAGGTTGTCAT 60.925 50.000 0.00 0.00 0.00 3.06
597 3246 2.915463 CGAACACGAGTAGGTTGTCATC 59.085 50.000 0.00 0.00 0.00 2.92
623 3272 2.214920 TGGCAATTGGCATGGCACA 61.215 52.632 29.00 13.42 46.85 4.57
778 3431 2.574018 GGGTTTCCACTTGGCAGCC 61.574 63.158 3.66 3.66 34.44 4.85
781 3434 0.538287 GTTTCCACTTGGCAGCCTCT 60.538 55.000 14.15 0.00 34.44 3.69
796 3449 3.515901 CAGCCTCTACCAACTTTCTACCT 59.484 47.826 0.00 0.00 0.00 3.08
799 3452 4.439837 GCCTCTACCAACTTTCTACCTACG 60.440 50.000 0.00 0.00 0.00 3.51
873 3526 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
961 3614 2.486191 CCAGATTCCTAGCCACATGACC 60.486 54.545 0.00 0.00 0.00 4.02
962 3615 1.771255 AGATTCCTAGCCACATGACCC 59.229 52.381 0.00 0.00 0.00 4.46
963 3616 1.771255 GATTCCTAGCCACATGACCCT 59.229 52.381 0.00 0.00 0.00 4.34
964 3617 1.204146 TTCCTAGCCACATGACCCTC 58.796 55.000 0.00 0.00 0.00 4.30
965 3618 0.691078 TCCTAGCCACATGACCCTCC 60.691 60.000 0.00 0.00 0.00 4.30
966 3619 1.443407 CTAGCCACATGACCCTCCG 59.557 63.158 0.00 0.00 0.00 4.63
1979 4647 1.474879 CTTCGACTTCTGAGAGACCCC 59.525 57.143 0.00 0.00 0.00 4.95
2062 4730 2.811322 ATGATCACCTCCTCTCCCAT 57.189 50.000 0.00 0.00 0.00 4.00
2063 4731 3.931241 ATGATCACCTCCTCTCCCATA 57.069 47.619 0.00 0.00 0.00 2.74
2064 4732 2.964209 TGATCACCTCCTCTCCCATAC 58.036 52.381 0.00 0.00 0.00 2.39
2213 4885 5.152623 TGTCTTGGTCAGTTCCTCATAAG 57.847 43.478 0.00 0.00 0.00 1.73
2252 4926 9.973450 ACTATATGATTCATGTGTGTTCTAGAC 57.027 33.333 9.46 0.00 0.00 2.59
2291 4965 1.317613 ACCAATTTTCACTGCGCTGA 58.682 45.000 21.92 8.43 0.00 4.26
2346 5020 2.724349 CTGGAATTAAGCTTGCATCGC 58.276 47.619 9.86 0.54 0.00 4.58
2351 5025 1.473258 TTAAGCTTGCATCGCCCAAT 58.527 45.000 9.86 0.00 0.00 3.16
2352 5026 2.340210 TAAGCTTGCATCGCCCAATA 57.660 45.000 9.86 0.00 0.00 1.90
2358 5032 2.183478 TGCATCGCCCAATATACAGG 57.817 50.000 0.00 0.00 0.00 4.00
2392 5070 2.523015 GAAATGACAAATCAGCAGGCG 58.477 47.619 0.00 0.00 38.57 5.52
2442 5120 2.263895 TGCACAAGGGGTAGGAGTAT 57.736 50.000 0.00 0.00 0.00 2.12
2443 5121 1.837439 TGCACAAGGGGTAGGAGTATG 59.163 52.381 0.00 0.00 0.00 2.39
2469 5147 4.760204 ACCAGCAGTTACCAAGTTACAATC 59.240 41.667 0.00 0.00 0.00 2.67
2500 5178 3.239254 TGTAGTACAAGACGACATTGCG 58.761 45.455 0.00 0.00 38.59 4.85
2517 5195 1.155889 GCGTGATGATGAACCACACA 58.844 50.000 0.00 0.00 0.00 3.72
2530 5208 4.202514 TGAACCACACACCAGGATTATTCA 60.203 41.667 0.00 0.00 0.00 2.57
2533 5211 4.766891 ACCACACACCAGGATTATTCAAAG 59.233 41.667 0.00 0.00 0.00 2.77
2606 5289 1.000938 GAGTGCTGACAAAGGCCAAAG 60.001 52.381 5.01 0.00 0.00 2.77
2680 5363 3.884900 GTCAAACGGACGGATGGG 58.115 61.111 0.00 0.00 36.65 4.00
2688 5371 2.340328 GGACGGATGGGCCAACAAC 61.340 63.158 11.89 2.84 35.94 3.32
2731 5414 5.050126 ACCATGCTCATTCAAGATCTGAT 57.950 39.130 0.00 0.00 32.78 2.90
2748 5437 2.403259 TGATACATAAGTGCATCGCCG 58.597 47.619 0.00 0.00 31.85 6.46
2749 5438 1.726791 GATACATAAGTGCATCGCCGG 59.273 52.381 0.00 0.00 0.00 6.13
2761 5450 2.014128 CATCGCCGGTGTTTATTTCCT 58.986 47.619 16.01 0.00 0.00 3.36
2762 5451 3.199677 CATCGCCGGTGTTTATTTCCTA 58.800 45.455 16.01 0.00 0.00 2.94
2763 5452 2.896168 TCGCCGGTGTTTATTTCCTAG 58.104 47.619 16.01 0.00 0.00 3.02
2804 5494 0.742990 CCCTCGCAAATAGACCGCAA 60.743 55.000 0.00 0.00 0.00 4.85
2853 5544 1.767759 GCCCTAATGACACTGGCATT 58.232 50.000 14.67 14.67 41.76 3.56
2874 5568 5.966636 TTGAGACATCAACGCATATGTAC 57.033 39.130 4.29 0.00 40.54 2.90
2875 5569 4.368315 TGAGACATCAACGCATATGTACC 58.632 43.478 4.29 0.00 36.48 3.34
2907 5601 1.066071 TCCACACAGTTGTCCAAACGA 60.066 47.619 0.00 0.00 31.66 3.85
2908 5602 1.740585 CCACACAGTTGTCCAAACGAA 59.259 47.619 0.00 0.00 31.66 3.85
2909 5603 2.477189 CCACACAGTTGTCCAAACGAAC 60.477 50.000 0.00 0.00 31.66 3.95
2910 5604 1.395608 ACACAGTTGTCCAAACGAACG 59.604 47.619 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 100 3.552684 CGTGAATGGCAGGTGTGATTTTT 60.553 43.478 0.00 0.00 0.00 1.94
100 105 0.107643 TTCGTGAATGGCAGGTGTGA 59.892 50.000 0.00 0.00 34.14 3.58
113 118 1.542472 TGATGGCTTCGTAGTTCGTGA 59.458 47.619 0.00 0.00 40.80 4.35
121 126 1.202371 GGATCGTGTGATGGCTTCGTA 60.202 52.381 0.00 0.00 34.09 3.43
127 132 0.464373 ATGGTGGATCGTGTGATGGC 60.464 55.000 0.00 0.00 34.09 4.40
180 186 0.851469 AGGTAGTCCAGGAGCGGATA 59.149 55.000 0.00 0.00 37.41 2.59
280 286 2.942796 AAGGATGACGTGCCAGCGA 61.943 57.895 0.00 0.00 35.59 4.93
348 354 6.845758 TTTTTAGATCCTACTCCGACAAGA 57.154 37.500 0.00 0.00 0.00 3.02
370 376 5.607119 ATGACGACGCTGAATAAAGTTTT 57.393 34.783 0.00 0.00 0.00 2.43
401 407 3.636282 TGTTCATCGTCTTGACTTCGA 57.364 42.857 0.00 0.00 37.96 3.71
460 467 2.230940 CGTCGGATCCACGCATGTC 61.231 63.158 19.11 0.00 0.00 3.06
464 471 4.124351 GGTCGTCGGATCCACGCA 62.124 66.667 23.58 14.15 37.18 5.24
513 521 3.003763 GAGTCTCACCCGCCCCTT 61.004 66.667 0.00 0.00 0.00 3.95
523 3172 1.536073 CCTTGCCGTCAGGAGTCTCA 61.536 60.000 1.47 0.00 41.02 3.27
575 3224 1.058404 GACAACCTACTCGTGTTCGC 58.942 55.000 0.00 0.00 36.96 4.70
578 3227 2.295349 ACGATGACAACCTACTCGTGTT 59.705 45.455 0.00 0.00 40.68 3.32
579 3228 1.884579 ACGATGACAACCTACTCGTGT 59.115 47.619 0.00 0.00 40.68 4.49
580 3229 2.631418 ACGATGACAACCTACTCGTG 57.369 50.000 0.00 0.00 40.68 4.35
581 3230 1.201647 CCACGATGACAACCTACTCGT 59.798 52.381 0.00 0.00 42.75 4.18
582 3231 1.471287 TCCACGATGACAACCTACTCG 59.529 52.381 0.00 0.00 35.56 4.18
583 3232 3.056749 ACTTCCACGATGACAACCTACTC 60.057 47.826 0.00 0.00 0.00 2.59
584 3233 2.897969 ACTTCCACGATGACAACCTACT 59.102 45.455 0.00 0.00 0.00 2.57
585 3234 2.993899 CACTTCCACGATGACAACCTAC 59.006 50.000 0.00 0.00 0.00 3.18
586 3235 2.028476 CCACTTCCACGATGACAACCTA 60.028 50.000 0.00 0.00 0.00 3.08
587 3236 1.270839 CCACTTCCACGATGACAACCT 60.271 52.381 0.00 0.00 0.00 3.50
588 3237 1.156736 CCACTTCCACGATGACAACC 58.843 55.000 0.00 0.00 0.00 3.77
589 3238 0.517316 GCCACTTCCACGATGACAAC 59.483 55.000 0.00 0.00 0.00 3.32
590 3239 0.107643 TGCCACTTCCACGATGACAA 59.892 50.000 0.00 0.00 0.00 3.18
591 3240 0.107643 TTGCCACTTCCACGATGACA 59.892 50.000 0.00 0.00 0.00 3.58
592 3241 1.453155 ATTGCCACTTCCACGATGAC 58.547 50.000 0.00 0.00 0.00 3.06
593 3242 1.811965 CAATTGCCACTTCCACGATGA 59.188 47.619 0.00 0.00 0.00 2.92
594 3243 1.135315 CCAATTGCCACTTCCACGATG 60.135 52.381 0.00 0.00 0.00 3.84
595 3244 1.176527 CCAATTGCCACTTCCACGAT 58.823 50.000 0.00 0.00 0.00 3.73
596 3245 1.523154 GCCAATTGCCACTTCCACGA 61.523 55.000 0.00 0.00 0.00 4.35
597 3246 1.080569 GCCAATTGCCACTTCCACG 60.081 57.895 0.00 0.00 0.00 4.94
682 3335 5.048713 CCTTTGGGGATTTTATACGATCTGC 60.049 44.000 0.00 0.00 37.23 4.26
872 3525 4.800592 TAATGGACGGCCGGGGGA 62.801 66.667 31.76 10.71 36.79 4.81
873 3526 4.557385 GTAATGGACGGCCGGGGG 62.557 72.222 31.76 0.90 36.79 5.40
874 3527 4.557385 GGTAATGGACGGCCGGGG 62.557 72.222 31.76 1.36 36.79 5.73
875 3528 3.456105 GAGGTAATGGACGGCCGGG 62.456 68.421 31.76 2.28 36.79 5.73
876 3529 2.108362 GAGGTAATGGACGGCCGG 59.892 66.667 31.76 11.88 36.79 6.13
2012 4680 0.763035 ATGGGGTACGCTACATTCCC 59.237 55.000 10.04 1.24 43.80 3.97
2049 4717 3.009695 CGATCTAGTATGGGAGAGGAGGT 59.990 52.174 0.00 0.00 0.00 3.85
2268 4942 3.058293 CAGCGCAGTGAAAATTGGTAAGA 60.058 43.478 11.47 0.00 0.00 2.10
2291 4965 9.920946 TTTCTGGCAGAGGTCTAAAATAAATAT 57.079 29.630 17.91 0.00 0.00 1.28
2336 5010 1.879380 TGTATATTGGGCGATGCAAGC 59.121 47.619 8.80 8.80 0.00 4.01
2346 5020 4.408596 ACCCATTTTTGCCTGTATATTGGG 59.591 41.667 0.00 0.00 45.46 4.12
2351 5025 5.718801 TCCTACCCATTTTTGCCTGTATA 57.281 39.130 0.00 0.00 0.00 1.47
2352 5026 4.601406 TCCTACCCATTTTTGCCTGTAT 57.399 40.909 0.00 0.00 0.00 2.29
2358 5032 5.146010 TGTCATTTCCTACCCATTTTTGC 57.854 39.130 0.00 0.00 0.00 3.68
2363 5037 5.127682 GCTGATTTGTCATTTCCTACCCATT 59.872 40.000 0.00 0.00 0.00 3.16
2392 5070 3.805207 ACGGGTCCTATTCAAATGCTAC 58.195 45.455 0.00 0.00 0.00 3.58
2411 5089 2.602660 CCCTTGTGCAAGAAAAACAACG 59.397 45.455 12.99 0.00 40.79 4.10
2442 5120 0.400213 CTTGGTAACTGCTGGTCCCA 59.600 55.000 0.00 0.00 37.61 4.37
2443 5121 0.400594 ACTTGGTAACTGCTGGTCCC 59.599 55.000 0.00 0.00 37.61 4.46
2492 5170 2.419673 TGGTTCATCATCACGCAATGTC 59.580 45.455 0.00 0.00 0.00 3.06
2493 5171 2.162208 GTGGTTCATCATCACGCAATGT 59.838 45.455 0.00 0.00 0.00 2.71
2494 5172 2.162008 TGTGGTTCATCATCACGCAATG 59.838 45.455 0.00 0.00 34.43 2.82
2500 5178 2.485426 CTGGTGTGTGGTTCATCATCAC 59.515 50.000 0.00 0.00 0.00 3.06
2517 5195 4.331968 TGCGAACTTTGAATAATCCTGGT 58.668 39.130 0.00 0.00 0.00 4.00
2530 5208 3.128589 ACAACACACTTCATGCGAACTTT 59.871 39.130 0.00 0.00 0.00 2.66
2533 5211 2.755836 ACAACACACTTCATGCGAAC 57.244 45.000 0.00 0.00 0.00 3.95
2606 5289 2.176798 TGAACATGGGAATGGGGTATCC 59.823 50.000 0.00 0.00 34.85 2.59
2653 5336 2.700694 GTCCGTTTGACTGTTCGTTTG 58.299 47.619 0.00 0.00 41.03 2.93
2680 5363 3.932545 TGTTGTCATATGGTTGTTGGC 57.067 42.857 2.13 0.00 0.00 4.52
2688 5371 5.532032 TGGTCATATGCTTGTTGTCATATGG 59.468 40.000 17.14 4.78 46.15 2.74
2709 5392 4.498894 TCAGATCTTGAATGAGCATGGT 57.501 40.909 0.00 0.00 31.34 3.55
2731 5414 0.462375 ACCGGCGATGCACTTATGTA 59.538 50.000 9.30 0.00 0.00 2.29
2748 5437 6.478016 GGTCGACATACTAGGAAATAAACACC 59.522 42.308 18.91 0.00 0.00 4.16
2749 5438 7.037438 TGGTCGACATACTAGGAAATAAACAC 58.963 38.462 18.91 0.00 0.00 3.32
2761 5450 4.848562 CCAGCTTATGGTCGACATACTA 57.151 45.455 18.91 0.00 44.91 1.82
2762 5451 3.735237 CCAGCTTATGGTCGACATACT 57.265 47.619 18.91 2.48 44.91 2.12
2788 5477 1.366111 GGCTTGCGGTCTATTTGCGA 61.366 55.000 0.00 0.00 0.00 5.10
2826 5517 0.454600 TGTCATTAGGGCGTCTCGTC 59.545 55.000 0.00 0.00 0.00 4.20
2853 5544 4.142049 TGGTACATATGCGTTGATGTCTCA 60.142 41.667 1.58 0.00 37.47 3.27
2907 5601 1.096416 TTCAAAGGACCAAACGCGTT 58.904 45.000 20.79 20.79 0.00 4.84
2908 5602 0.379316 GTTCAAAGGACCAAACGCGT 59.621 50.000 5.58 5.58 0.00 6.01
2909 5603 0.317519 GGTTCAAAGGACCAAACGCG 60.318 55.000 3.53 3.53 37.14 6.01
2910 5604 0.317519 CGGTTCAAAGGACCAAACGC 60.318 55.000 0.00 0.00 36.99 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.