Multiple sequence alignment - TraesCS5A01G246200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G246200 chr5A 100.000 2480 0 0 1 2480 459541680 459544159 0.000000e+00 4580.0
1 TraesCS5A01G246200 chr5D 86.445 2228 192 33 7 2177 358797379 358799553 0.000000e+00 2340.0
2 TraesCS5A01G246200 chr5D 92.903 155 6 2 2210 2360 358799667 358799820 1.150000e-53 220.0
3 TraesCS5A01G246200 chr5D 100.000 29 0 0 2358 2386 358799865 358799893 1.000000e-03 54.7
4 TraesCS5A01G246200 chr5B 88.938 1347 116 23 700 2039 423795885 423797205 0.000000e+00 1631.0
5 TraesCS5A01G246200 chr5B 82.751 429 55 10 9 432 423792116 423792530 5.040000e-97 364.0
6 TraesCS5A01G246200 chr5B 94.915 118 4 2 2210 2326 423797406 423797522 1.510000e-42 183.0
7 TraesCS5A01G246200 chr5B 97.297 37 1 0 2319 2355 423797806 423797842 2.060000e-06 63.9
8 TraesCS5A01G246200 chr4B 85.146 754 82 23 733 1463 436098192 436098938 0.000000e+00 745.0
9 TraesCS5A01G246200 chr4B 94.796 442 23 0 1022 1463 436102581 436103022 0.000000e+00 689.0
10 TraesCS5A01G246200 chr4B 83.051 118 20 0 117 234 10898054 10898171 9.380000e-20 108.0
11 TraesCS5A01G246200 chr4A 84.656 756 84 26 733 1463 112858345 112857597 0.000000e+00 725.0
12 TraesCS5A01G246200 chr4A 94.989 439 22 0 1025 1463 112853360 112852922 0.000000e+00 689.0
13 TraesCS5A01G246200 chr4A 94.931 434 22 0 1025 1458 112847011 112846578 0.000000e+00 680.0
14 TraesCS5A01G246200 chr4D 95.023 442 22 0 1022 1463 352580006 352580447 0.000000e+00 695.0
15 TraesCS5A01G246200 chr4D 85.263 95 14 0 117 211 42123456 42123362 5.640000e-17 99.0
16 TraesCS5A01G246200 chr6B 91.435 467 34 3 998 1458 145043635 145044101 9.670000e-179 636.0
17 TraesCS5A01G246200 chr1D 80.791 354 51 9 29 377 445388334 445388675 6.800000e-66 261.0
18 TraesCS5A01G246200 chr2D 76.075 372 61 20 107 458 245386731 245386368 4.240000e-38 169.0
19 TraesCS5A01G246200 chr3A 78.733 221 35 5 29 247 662954838 662955048 1.200000e-28 137.0
20 TraesCS5A01G246200 chr6A 78.733 221 26 11 256 457 521856938 521856720 7.200000e-26 128.0
21 TraesCS5A01G246200 chr3D 82.022 89 16 0 257 345 26035047 26034959 2.640000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G246200 chr5A 459541680 459544159 2479 False 4580.000000 4580 100.00000 1 2480 1 chr5A.!!$F1 2479
1 TraesCS5A01G246200 chr5D 358797379 358799893 2514 False 871.566667 2340 93.11600 7 2386 3 chr5D.!!$F1 2379
2 TraesCS5A01G246200 chr5B 423792116 423797842 5726 False 560.475000 1631 90.97525 9 2355 4 chr5B.!!$F1 2346
3 TraesCS5A01G246200 chr4B 436098192 436103022 4830 False 717.000000 745 89.97100 733 1463 2 chr4B.!!$F2 730
4 TraesCS5A01G246200 chr4A 112857597 112858345 748 True 725.000000 725 84.65600 733 1463 1 chr4A.!!$R3 730


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.392595 CAGAGATGAAGCTGCAGCCA 60.393 55.0 34.39 25.76 43.38 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 9410 0.099968 TCCGAACGGAGCGAATACTG 59.9 55.0 12.04 0.0 39.76 2.74 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.476110 CGTTTCCCAACACTTCCTCCA 60.476 52.381 0.00 0.00 32.54 3.86
41 42 1.450211 CAACACTTCCTCCACCCGT 59.550 57.895 0.00 0.00 0.00 5.28
76 77 2.543067 GAAGGGAGCAGGCGTGGATT 62.543 60.000 8.72 0.00 0.00 3.01
99 100 4.446413 CGCCCGCTCCCGTAGTTT 62.446 66.667 0.00 0.00 0.00 2.66
100 101 2.046604 GCCCGCTCCCGTAGTTTT 60.047 61.111 0.00 0.00 0.00 2.43
101 102 1.673337 GCCCGCTCCCGTAGTTTTT 60.673 57.895 0.00 0.00 0.00 1.94
132 133 3.860930 ATGGGCGTGGGCGAACTTT 62.861 57.895 0.00 0.00 41.24 2.66
133 134 3.733960 GGGCGTGGGCGAACTTTC 61.734 66.667 0.00 0.00 41.24 2.62
158 159 1.021202 CTCGACCGCATCTTCTCTCT 58.979 55.000 0.00 0.00 0.00 3.10
165 166 1.558741 GCATCTTCTCTCTGTCGCTG 58.441 55.000 0.00 0.00 0.00 5.18
211 212 2.610859 GGTGGGAGGCCAAGGAGA 60.611 66.667 5.01 0.00 0.00 3.71
213 214 2.610859 TGGGAGGCCAAGGAGACC 60.611 66.667 5.01 0.00 0.00 3.85
214 215 2.610859 GGGAGGCCAAGGAGACCA 60.611 66.667 5.01 0.00 0.00 4.02
216 217 1.920835 GGAGGCCAAGGAGACCACT 60.921 63.158 5.01 0.00 0.00 4.00
217 218 0.617820 GGAGGCCAAGGAGACCACTA 60.618 60.000 5.01 0.00 0.00 2.74
223 224 1.229082 AAGGAGACCACTACCGCCA 60.229 57.895 0.00 0.00 0.00 5.69
237 238 1.449070 CGCCAGAGATGAAGCTGCA 60.449 57.895 0.00 0.00 0.00 4.41
241 242 0.392595 CAGAGATGAAGCTGCAGCCA 60.393 55.000 34.39 25.76 43.38 4.75
264 265 2.564975 GTCCCGACGCTCTTCGAA 59.435 61.111 0.00 0.00 41.78 3.71
277 278 2.614520 CTCTTCGAAGAGTATCGGCTCA 59.385 50.000 36.43 10.20 45.84 4.26
283 285 2.616634 AGAGTATCGGCTCACGTAGA 57.383 50.000 0.00 0.00 44.69 2.59
312 314 0.676782 GCACCCTCATGTACCACCAC 60.677 60.000 0.00 0.00 0.00 4.16
378 386 8.712285 AGTATGCTAGTATGCTTTTCGTTTAA 57.288 30.769 5.61 0.00 0.00 1.52
419 429 7.043565 TCGGTTTGTATTAAGTATGAACTCCC 58.956 38.462 0.00 0.00 33.75 4.30
443 3377 3.452755 TGGCATGTAGTATGAACTCCG 57.547 47.619 0.00 0.00 37.15 4.63
461 3416 2.427812 TCCGGTGATCTATGTTTACGCA 59.572 45.455 0.00 0.00 0.00 5.24
478 3433 9.527566 TGTTTACGCACGAACTATAAATTTAAC 57.472 29.630 1.21 0.00 0.00 2.01
487 3442 8.545420 ACGAACTATAAATTTAACTATGCGGTG 58.455 33.333 1.21 0.00 0.00 4.94
490 3445 9.609346 AACTATAAATTTAACTATGCGGTGTCT 57.391 29.630 1.21 0.00 0.00 3.41
509 3464 7.175119 CGGTGTCTGTATGAAGGATCTATTCTA 59.825 40.741 11.00 1.51 0.00 2.10
511 3466 8.026607 GTGTCTGTATGAAGGATCTATTCTAGC 58.973 40.741 11.00 0.00 0.00 3.42
521 3476 6.069331 AGGATCTATTCTAGCTAAACGTCCA 58.931 40.000 0.00 0.00 0.00 4.02
522 3477 6.207810 AGGATCTATTCTAGCTAAACGTCCAG 59.792 42.308 0.00 0.00 0.00 3.86
524 3479 2.273370 TTCTAGCTAAACGTCCAGCG 57.727 50.000 13.75 3.62 42.74 5.18
537 3492 4.141855 CGTCCAGCGTTCTACAAAAATT 57.858 40.909 0.00 0.00 35.54 1.82
544 3499 5.746245 CAGCGTTCTACAAAAATTGTTTCCA 59.254 36.000 0.54 0.00 42.22 3.53
547 3502 7.494298 AGCGTTCTACAAAAATTGTTTCCAAAT 59.506 29.630 0.54 0.00 42.22 2.32
548 3503 8.756864 GCGTTCTACAAAAATTGTTTCCAAATA 58.243 29.630 0.54 0.00 42.22 1.40
563 3519 8.077386 TGTTTCCAAATATTGTAACCGAGTTTC 58.923 33.333 0.00 0.00 0.00 2.78
604 3560 3.255642 GGACCTGCTAGAGATGCTCTTAG 59.744 52.174 1.88 0.38 41.50 2.18
617 3573 3.073144 GCTCTTAGCAAGTCGGAGTAG 57.927 52.381 0.00 0.00 41.89 2.57
619 3575 3.626670 GCTCTTAGCAAGTCGGAGTAGTA 59.373 47.826 0.00 0.00 41.89 1.82
620 3576 4.496175 GCTCTTAGCAAGTCGGAGTAGTAC 60.496 50.000 0.00 0.00 41.89 2.73
621 3577 4.841422 TCTTAGCAAGTCGGAGTAGTACT 58.159 43.478 1.37 1.37 0.00 2.73
667 3750 1.215647 GAGTACGCCCAGTCCACTG 59.784 63.158 0.00 0.00 43.40 3.66
718 3821 3.326385 ATCTCACCCCCGGTAGGCA 62.326 63.158 7.67 0.00 32.11 4.75
725 3828 1.077716 CCCCGGTAGGCAGGAAAAG 60.078 63.158 0.00 0.00 35.76 2.27
828 3931 4.796231 GCATCGCGTCCGTCCACT 62.796 66.667 5.77 0.00 35.54 4.00
1041 4186 4.048470 AAGGGGAAGAAGGGCGCC 62.048 66.667 21.18 21.18 37.38 6.53
1083 4228 0.037232 CCAGGAAGAAGTCGGTGACC 60.037 60.000 0.00 0.00 32.18 4.02
1119 4264 2.995574 CTCCAGTTCCCCGTCGGT 60.996 66.667 11.06 0.00 0.00 4.69
1374 8603 0.926293 TCATCCCCAAGATCAACCCC 59.074 55.000 0.00 0.00 30.59 4.95
1490 8719 3.194062 AGAAAGCTTAAGAGAGATGCGC 58.806 45.455 6.67 0.00 0.00 6.09
1506 8735 0.170561 GCGCTCTCTGTCGTTTAGGA 59.829 55.000 0.00 0.00 0.00 2.94
1532 8761 2.296190 TGCTGTGTAGTGTTCGTCTGAT 59.704 45.455 0.00 0.00 0.00 2.90
1536 8765 5.700722 TGTGTAGTGTTCGTCTGATTAGT 57.299 39.130 0.00 0.00 0.00 2.24
1538 8767 5.239963 TGTGTAGTGTTCGTCTGATTAGTGA 59.760 40.000 0.00 0.00 0.00 3.41
1539 8768 6.072119 TGTGTAGTGTTCGTCTGATTAGTGAT 60.072 38.462 0.00 0.00 0.00 3.06
1552 8783 5.245531 TGATTAGTGATGTGAAGGTGTTCC 58.754 41.667 0.00 0.00 0.00 3.62
1580 8811 3.569194 TGTTGATGTACCCTGTGTTGT 57.431 42.857 0.00 0.00 0.00 3.32
1581 8812 3.210227 TGTTGATGTACCCTGTGTTGTG 58.790 45.455 0.00 0.00 0.00 3.33
1606 8837 7.014518 TGTTCATGTTCATGGAAGAAATTCAGT 59.985 33.333 12.02 0.00 0.00 3.41
1614 8845 8.954950 TCATGGAAGAAATTCAGTAATCTCTC 57.045 34.615 0.00 0.00 0.00 3.20
1656 8888 3.807553 TGTCTCTTTGAGTCATTGCACA 58.192 40.909 0.00 0.00 0.00 4.57
1675 8907 4.142730 GCACAGGAGATTTGAATCACTGAC 60.143 45.833 23.31 15.63 41.32 3.51
1679 8911 2.668457 GAGATTTGAATCACTGACGCGT 59.332 45.455 13.85 13.85 37.89 6.01
1680 8912 2.668457 AGATTTGAATCACTGACGCGTC 59.332 45.455 31.66 31.66 37.89 5.19
1683 8915 0.666274 TGAATCACTGACGCGTCACC 60.666 55.000 36.40 20.13 35.46 4.02
1696 8928 2.203139 TCACCTGTTGCCCGTGTG 60.203 61.111 0.00 0.00 0.00 3.82
1720 8952 4.905295 GCTGAAATTGGCAAACGAATTTTG 59.095 37.500 3.01 0.00 46.57 2.44
1769 9001 4.623932 TGTGGATTCAGTTTACTGCTCT 57.376 40.909 5.00 0.00 43.46 4.09
1773 9005 4.187694 GGATTCAGTTTACTGCTCTGGAG 58.812 47.826 5.00 0.00 43.46 3.86
1774 9006 3.685139 TTCAGTTTACTGCTCTGGAGG 57.315 47.619 5.00 0.00 43.46 4.30
1775 9007 2.889512 TCAGTTTACTGCTCTGGAGGA 58.110 47.619 5.00 0.00 43.46 3.71
1789 9023 5.091261 TCTGGAGGAGTATTTGAGAAAGC 57.909 43.478 0.00 0.00 0.00 3.51
1791 9025 5.013079 TCTGGAGGAGTATTTGAGAAAGCAA 59.987 40.000 0.00 0.00 0.00 3.91
1801 9035 0.165511 GAGAAAGCAACAGCAGAGCG 59.834 55.000 0.00 0.00 0.00 5.03
1882 9118 8.871686 AAAAACACTTCCTATGAATTTGTGTC 57.128 30.769 0.00 0.00 36.77 3.67
1908 9144 6.183360 GGAGGGAATTGAATAACCTGTCAATG 60.183 42.308 5.44 0.00 42.30 2.82
1987 9223 0.039074 ACAGAAGTCGCCTTGTCTCG 60.039 55.000 0.00 0.00 0.00 4.04
2039 9275 4.803426 GCAGACGACTCCGGGCTG 62.803 72.222 0.00 0.00 41.76 4.85
2041 9277 2.600769 AGACGACTCCGGGCTGTT 60.601 61.111 0.00 0.00 40.78 3.16
2043 9279 2.915659 ACGACTCCGGGCTGTTCA 60.916 61.111 0.00 0.00 40.78 3.18
2045 9281 1.519455 CGACTCCGGGCTGTTCATC 60.519 63.158 0.00 0.00 0.00 2.92
2084 9352 2.686106 GCCCTTCACTACCGGGGA 60.686 66.667 6.32 0.00 41.25 4.81
2093 9361 5.397559 CCTTCACTACCGGGGATTAATTTCT 60.398 44.000 6.32 0.00 0.00 2.52
2100 9368 3.632145 CCGGGGATTAATTTCTGAACAGG 59.368 47.826 0.00 0.00 0.00 4.00
2103 9371 4.339530 GGGGATTAATTTCTGAACAGGAGC 59.660 45.833 1.93 0.00 0.00 4.70
2106 9374 5.220681 GGATTAATTTCTGAACAGGAGCGAC 60.221 44.000 1.93 0.00 0.00 5.19
2109 9377 1.176619 TTCTGAACAGGAGCGACGGA 61.177 55.000 0.00 0.00 0.00 4.69
2123 9391 0.175989 GACGGATGGAGAGGGTTGTC 59.824 60.000 0.00 0.00 0.00 3.18
2142 9410 6.128254 GGTTGTCCTAGCAAATCTCTGTAAAC 60.128 42.308 0.00 0.00 0.00 2.01
2149 9417 8.821894 CCTAGCAAATCTCTGTAAACAGTATTC 58.178 37.037 9.81 2.35 44.12 1.75
2185 9506 0.668706 AGTGACGCTGTCAGTGATGC 60.669 55.000 20.13 9.09 43.53 3.91
2196 9517 1.469703 TCAGTGATGCCAAAATGCTCG 59.530 47.619 0.00 0.00 0.00 5.03
2201 9522 0.611618 ATGCCAAAATGCTCGACCCA 60.612 50.000 0.00 0.00 0.00 4.51
2203 9524 1.508088 CCAAAATGCTCGACCCAGC 59.492 57.895 0.00 0.00 40.13 4.85
2206 9527 1.589716 AAAATGCTCGACCCAGCTGC 61.590 55.000 8.66 0.00 40.39 5.25
2289 9638 3.056250 TCTGATCTTTGCTCTTCTTCGCT 60.056 43.478 0.00 0.00 0.00 4.93
2310 9659 1.338864 ACATTGCAGTCTGCCAGAGAG 60.339 52.381 21.99 8.49 44.23 3.20
2355 10000 3.883489 AGCAAACTTACTGAAGGTGAACC 59.117 43.478 0.00 0.00 36.95 3.62
2386 10078 4.775058 TTGTTATTGTCAATTGGGACGG 57.225 40.909 5.42 0.00 40.72 4.79
2387 10079 4.022413 TGTTATTGTCAATTGGGACGGA 57.978 40.909 5.42 0.00 40.72 4.69
2388 10080 3.754323 TGTTATTGTCAATTGGGACGGAC 59.246 43.478 5.42 0.00 40.72 4.79
2389 10081 1.834188 ATTGTCAATTGGGACGGACC 58.166 50.000 5.42 0.00 40.72 4.46
2390 10082 0.474614 TTGTCAATTGGGACGGACCA 59.525 50.000 5.42 0.00 40.72 4.02
2391 10083 0.036164 TGTCAATTGGGACGGACCAG 59.964 55.000 5.42 0.00 42.47 4.00
2392 10084 0.323629 GTCAATTGGGACGGACCAGA 59.676 55.000 5.42 0.00 42.47 3.86
2393 10085 0.613260 TCAATTGGGACGGACCAGAG 59.387 55.000 5.42 0.00 42.47 3.35
2394 10086 0.324943 CAATTGGGACGGACCAGAGT 59.675 55.000 0.00 0.00 42.47 3.24
2395 10087 1.553248 CAATTGGGACGGACCAGAGTA 59.447 52.381 0.00 0.00 42.47 2.59
2396 10088 1.946984 ATTGGGACGGACCAGAGTAA 58.053 50.000 0.00 0.00 42.47 2.24
2397 10089 1.263356 TTGGGACGGACCAGAGTAAG 58.737 55.000 0.00 0.00 42.47 2.34
2398 10090 0.113776 TGGGACGGACCAGAGTAAGT 59.886 55.000 0.00 0.00 41.20 2.24
2399 10091 1.264295 GGGACGGACCAGAGTAAGTT 58.736 55.000 0.00 0.00 41.20 2.66
2400 10092 1.622312 GGGACGGACCAGAGTAAGTTT 59.378 52.381 0.00 0.00 41.20 2.66
2401 10093 2.612221 GGGACGGACCAGAGTAAGTTTG 60.612 54.545 0.00 0.00 41.20 2.93
2402 10094 2.612221 GGACGGACCAGAGTAAGTTTGG 60.612 54.545 0.00 0.00 38.79 3.28
2403 10095 2.298163 GACGGACCAGAGTAAGTTTGGA 59.702 50.000 0.00 0.00 35.89 3.53
2404 10096 2.299297 ACGGACCAGAGTAAGTTTGGAG 59.701 50.000 0.00 0.00 35.89 3.86
2405 10097 2.701107 GGACCAGAGTAAGTTTGGAGC 58.299 52.381 0.00 0.00 35.89 4.70
2406 10098 2.615747 GGACCAGAGTAAGTTTGGAGCC 60.616 54.545 0.00 0.00 35.89 4.70
2407 10099 1.351350 ACCAGAGTAAGTTTGGAGCCC 59.649 52.381 0.00 0.00 35.89 5.19
2408 10100 1.630878 CCAGAGTAAGTTTGGAGCCCT 59.369 52.381 0.00 0.00 33.76 5.19
2409 10101 2.616510 CCAGAGTAAGTTTGGAGCCCTG 60.617 54.545 0.00 0.00 33.76 4.45
2410 10102 2.303022 CAGAGTAAGTTTGGAGCCCTGA 59.697 50.000 0.00 0.00 0.00 3.86
2411 10103 3.054802 CAGAGTAAGTTTGGAGCCCTGAT 60.055 47.826 0.00 0.00 0.00 2.90
2412 10104 3.054802 AGAGTAAGTTTGGAGCCCTGATG 60.055 47.826 0.00 0.00 0.00 3.07
2413 10105 1.745653 GTAAGTTTGGAGCCCTGATGC 59.254 52.381 0.00 0.00 0.00 3.91
2414 10106 0.962356 AAGTTTGGAGCCCTGATGCG 60.962 55.000 0.00 0.00 36.02 4.73
2415 10107 2.751436 TTTGGAGCCCTGATGCGC 60.751 61.111 0.00 0.00 36.02 6.09
2422 10114 2.442643 CCCTGATGCGCCCCAATT 60.443 61.111 4.18 0.00 0.00 2.32
2423 10115 2.788640 CCCTGATGCGCCCCAATTG 61.789 63.158 4.18 0.00 0.00 2.32
2424 10116 2.788640 CCTGATGCGCCCCAATTGG 61.789 63.158 18.21 18.21 0.00 3.16
2431 10123 2.981302 GCCCCAATTGGCCTGAAC 59.019 61.111 19.75 0.21 46.11 3.18
2432 10124 1.912763 GCCCCAATTGGCCTGAACA 60.913 57.895 19.75 0.00 46.11 3.18
2433 10125 1.479368 GCCCCAATTGGCCTGAACAA 61.479 55.000 19.75 0.00 46.11 2.83
2434 10126 0.321346 CCCCAATTGGCCTGAACAAC 59.679 55.000 19.75 0.00 0.00 3.32
2435 10127 1.047002 CCCAATTGGCCTGAACAACA 58.953 50.000 19.75 0.00 0.00 3.33
2436 10128 1.415659 CCCAATTGGCCTGAACAACAA 59.584 47.619 19.75 0.00 0.00 2.83
2437 10129 2.482864 CCAATTGGCCTGAACAACAAC 58.517 47.619 12.53 0.00 0.00 3.32
2438 10130 2.126467 CAATTGGCCTGAACAACAACG 58.874 47.619 3.32 0.00 0.00 4.10
2439 10131 0.031994 ATTGGCCTGAACAACAACGC 59.968 50.000 3.32 0.00 0.00 4.84
2440 10132 2.010582 TTGGCCTGAACAACAACGCC 62.011 55.000 3.32 0.00 41.56 5.68
2441 10133 2.193536 GGCCTGAACAACAACGCCT 61.194 57.895 0.00 0.00 39.49 5.52
2442 10134 1.733526 GCCTGAACAACAACGCCTT 59.266 52.632 0.00 0.00 0.00 4.35
2443 10135 0.102300 GCCTGAACAACAACGCCTTT 59.898 50.000 0.00 0.00 0.00 3.11
2444 10136 1.470805 GCCTGAACAACAACGCCTTTT 60.471 47.619 0.00 0.00 0.00 2.27
2445 10137 2.192624 CCTGAACAACAACGCCTTTTG 58.807 47.619 0.00 0.00 0.00 2.44
2446 10138 2.159310 CCTGAACAACAACGCCTTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
2447 10139 2.851824 CTGAACAACAACGCCTTTTGAC 59.148 45.455 0.00 0.00 0.00 3.18
2448 10140 1.843753 GAACAACAACGCCTTTTGACG 59.156 47.619 0.00 0.00 0.00 4.35
2449 10141 0.099791 ACAACAACGCCTTTTGACGG 59.900 50.000 0.00 0.00 0.00 4.79
2450 10142 1.065109 AACAACGCCTTTTGACGGC 59.935 52.632 0.00 0.00 44.11 5.68
2451 10143 1.381165 AACAACGCCTTTTGACGGCT 61.381 50.000 0.00 0.00 45.37 5.52
2452 10144 1.082104 CAACGCCTTTTGACGGCTC 60.082 57.895 0.00 0.00 45.37 4.70
2453 10145 2.258726 AACGCCTTTTGACGGCTCC 61.259 57.895 0.00 0.00 45.37 4.70
2454 10146 2.668212 CGCCTTTTGACGGCTCCA 60.668 61.111 0.00 0.00 45.37 3.86
2455 10147 2.258013 CGCCTTTTGACGGCTCCAA 61.258 57.895 0.00 0.00 45.37 3.53
2456 10148 1.586154 CGCCTTTTGACGGCTCCAAT 61.586 55.000 0.00 0.00 45.37 3.16
2457 10149 0.603065 GCCTTTTGACGGCTCCAATT 59.397 50.000 0.00 0.00 44.17 2.32
2458 10150 1.402852 GCCTTTTGACGGCTCCAATTC 60.403 52.381 0.00 0.00 44.17 2.17
2459 10151 1.202348 CCTTTTGACGGCTCCAATTCC 59.798 52.381 0.00 0.00 0.00 3.01
2460 10152 2.162681 CTTTTGACGGCTCCAATTCCT 58.837 47.619 0.00 0.00 0.00 3.36
2461 10153 1.533625 TTTGACGGCTCCAATTCCTG 58.466 50.000 0.00 0.00 0.00 3.86
2462 10154 0.690192 TTGACGGCTCCAATTCCTGA 59.310 50.000 0.00 0.00 0.00 3.86
2463 10155 0.250234 TGACGGCTCCAATTCCTGAG 59.750 55.000 0.00 0.00 0.00 3.35
2464 10156 0.537188 GACGGCTCCAATTCCTGAGA 59.463 55.000 0.00 0.00 0.00 3.27
2465 10157 0.539051 ACGGCTCCAATTCCTGAGAG 59.461 55.000 0.00 0.00 0.00 3.20
2466 10158 0.813210 CGGCTCCAATTCCTGAGAGC 60.813 60.000 2.28 2.28 42.79 4.09
2467 10159 0.254178 GGCTCCAATTCCTGAGAGCA 59.746 55.000 12.41 0.00 44.12 4.26
2468 10160 1.666054 GCTCCAATTCCTGAGAGCAG 58.334 55.000 6.00 0.00 42.92 4.24
2469 10161 1.666054 CTCCAATTCCTGAGAGCAGC 58.334 55.000 0.00 0.00 40.91 5.25
2470 10162 0.254178 TCCAATTCCTGAGAGCAGCC 59.746 55.000 0.00 0.00 40.91 4.85
2471 10163 0.750911 CCAATTCCTGAGAGCAGCCC 60.751 60.000 0.00 0.00 40.91 5.19
2472 10164 0.255318 CAATTCCTGAGAGCAGCCCT 59.745 55.000 0.00 0.00 40.91 5.19
2473 10165 0.255318 AATTCCTGAGAGCAGCCCTG 59.745 55.000 0.00 0.00 40.91 4.45
2474 10166 0.619832 ATTCCTGAGAGCAGCCCTGA 60.620 55.000 0.00 0.00 40.91 3.86
2475 10167 0.837691 TTCCTGAGAGCAGCCCTGAA 60.838 55.000 0.00 0.00 40.91 3.02
2476 10168 0.619832 TCCTGAGAGCAGCCCTGAAT 60.620 55.000 0.00 0.00 40.91 2.57
2477 10169 0.179051 CCTGAGAGCAGCCCTGAATC 60.179 60.000 0.00 0.00 40.91 2.52
2478 10170 0.179051 CTGAGAGCAGCCCTGAATCC 60.179 60.000 0.00 0.00 34.95 3.01
2479 10171 1.148048 GAGAGCAGCCCTGAATCCC 59.852 63.158 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.762823 AGTGTTGGGAAACGTGGTAAAAA 59.237 39.130 0.00 0.00 0.00 1.94
9 10 3.002038 AGTGTTGGGAAACGTGGTAAA 57.998 42.857 0.00 0.00 0.00 2.01
10 11 2.713863 AGTGTTGGGAAACGTGGTAA 57.286 45.000 0.00 0.00 0.00 2.85
11 12 2.563702 GAAGTGTTGGGAAACGTGGTA 58.436 47.619 0.00 0.00 0.00 3.25
12 13 1.385528 GAAGTGTTGGGAAACGTGGT 58.614 50.000 0.00 0.00 0.00 4.16
13 14 0.666374 GGAAGTGTTGGGAAACGTGG 59.334 55.000 0.00 0.00 0.00 4.94
14 15 1.602377 GAGGAAGTGTTGGGAAACGTG 59.398 52.381 0.00 0.00 0.00 4.49
41 42 2.448153 CTTCGTCGTTCGTCCACCGA 62.448 60.000 0.00 0.00 45.66 4.69
115 116 4.572571 AAAGTTCGCCCACGCCCA 62.573 61.111 0.00 0.00 39.84 5.36
135 136 1.066303 GAGAAGATGCGGTCGAGACAT 59.934 52.381 5.55 0.00 0.00 3.06
136 137 0.452184 GAGAAGATGCGGTCGAGACA 59.548 55.000 5.55 0.00 0.00 3.41
138 139 1.018148 GAGAGAAGATGCGGTCGAGA 58.982 55.000 0.00 0.00 0.00 4.04
172 173 4.194720 CTTCTCCGCCTCCCGACG 62.195 72.222 0.00 0.00 40.02 5.12
211 212 0.324368 TCATCTCTGGCGGTAGTGGT 60.324 55.000 0.00 0.00 0.00 4.16
213 214 1.804372 GCTTCATCTCTGGCGGTAGTG 60.804 57.143 0.00 0.00 0.00 2.74
214 215 0.461961 GCTTCATCTCTGGCGGTAGT 59.538 55.000 0.00 0.00 0.00 2.73
216 217 0.461548 CAGCTTCATCTCTGGCGGTA 59.538 55.000 0.00 0.00 0.00 4.02
217 218 1.220206 CAGCTTCATCTCTGGCGGT 59.780 57.895 0.00 0.00 0.00 5.68
223 224 0.392729 GTGGCTGCAGCTTCATCTCT 60.393 55.000 35.82 0.00 41.70 3.10
262 263 2.871022 TCTACGTGAGCCGATACTCTTC 59.129 50.000 0.00 0.00 40.70 2.87
264 265 2.616634 TCTACGTGAGCCGATACTCT 57.383 50.000 0.00 0.00 40.70 3.24
283 285 0.030297 ATGAGGGTGCTGGAGAGGAT 60.030 55.000 0.00 0.00 0.00 3.24
351 359 8.888579 AAACGAAAAGCATACTAGCATACTAT 57.111 30.769 0.00 0.00 36.85 2.12
419 429 4.923871 GGAGTTCATACTACATGCCATACG 59.076 45.833 0.00 0.00 35.12 3.06
443 3377 3.441163 TCGTGCGTAAACATAGATCACC 58.559 45.455 0.00 0.00 0.00 4.02
461 3416 8.545420 CACCGCATAGTTAAATTTATAGTTCGT 58.455 33.333 0.00 0.00 0.00 3.85
476 3431 4.433615 CTTCATACAGACACCGCATAGTT 58.566 43.478 0.00 0.00 0.00 2.24
478 3433 3.068165 TCCTTCATACAGACACCGCATAG 59.932 47.826 0.00 0.00 0.00 2.23
487 3442 8.348285 AGCTAGAATAGATCCTTCATACAGAC 57.652 38.462 0.00 0.00 42.77 3.51
521 3476 5.897050 TGGAAACAATTTTTGTAGAACGCT 58.103 33.333 0.00 0.00 44.59 5.07
537 3492 7.513371 AACTCGGTTACAATATTTGGAAACA 57.487 32.000 1.52 0.00 41.40 2.83
544 3499 4.201744 CCGCGAAACTCGGTTACAATATTT 60.202 41.667 8.23 0.00 40.84 1.40
547 3502 2.261345 CCGCGAAACTCGGTTACAATA 58.739 47.619 8.23 0.00 40.84 1.90
548 3503 1.073177 CCGCGAAACTCGGTTACAAT 58.927 50.000 8.23 0.00 40.84 2.71
549 3504 0.945265 CCCGCGAAACTCGGTTACAA 60.945 55.000 8.23 0.00 45.09 2.41
550 3505 1.373246 CCCGCGAAACTCGGTTACA 60.373 57.895 8.23 0.00 45.09 2.41
551 3506 1.080569 TCCCGCGAAACTCGGTTAC 60.081 57.895 8.23 0.00 45.09 2.50
552 3507 1.080569 GTCCCGCGAAACTCGGTTA 60.081 57.895 8.23 0.00 45.09 2.85
553 3508 2.356673 GTCCCGCGAAACTCGGTT 60.357 61.111 8.23 0.00 45.09 4.44
604 3560 4.872691 TGTACTAGTACTACTCCGACTTGC 59.127 45.833 28.56 3.05 37.00 4.01
607 3563 4.141824 GGGTGTACTAGTACTACTCCGACT 60.142 50.000 28.56 0.00 37.00 4.18
608 3564 4.123506 GGGTGTACTAGTACTACTCCGAC 58.876 52.174 28.56 18.06 37.00 4.79
609 3565 3.774766 TGGGTGTACTAGTACTACTCCGA 59.225 47.826 28.56 19.70 37.00 4.55
610 3566 4.125703 CTGGGTGTACTAGTACTACTCCG 58.874 52.174 28.56 18.34 37.00 4.63
611 3567 5.109500 ACTGGGTGTACTAGTACTACTCC 57.891 47.826 28.56 23.62 37.00 3.85
612 3568 5.122519 GGACTGGGTGTACTAGTACTACTC 58.877 50.000 28.56 23.76 37.00 2.59
614 3570 4.080072 AGGGACTGGGTGTACTAGTACTAC 60.080 50.000 28.56 23.31 37.18 2.73
616 3572 2.924977 AGGGACTGGGTGTACTAGTACT 59.075 50.000 28.56 11.51 37.18 2.73
617 3573 3.378861 AGGGACTGGGTGTACTAGTAC 57.621 52.381 23.58 23.58 37.18 2.73
619 3575 4.408904 TTTAGGGACTGGGTGTACTAGT 57.591 45.455 0.00 0.00 41.52 2.57
620 3576 5.750352 TTTTTAGGGACTGGGTGTACTAG 57.250 43.478 0.00 0.00 41.52 2.57
648 3731 2.181021 GTGGACTGGGCGTACTCG 59.819 66.667 0.00 0.00 40.37 4.18
649 3732 1.215647 CAGTGGACTGGGCGTACTC 59.784 63.158 0.00 0.00 40.20 2.59
650 3733 2.943978 GCAGTGGACTGGGCGTACT 61.944 63.158 8.82 0.00 43.94 2.73
651 3734 2.434359 GCAGTGGACTGGGCGTAC 60.434 66.667 8.82 0.00 43.94 3.67
652 3735 3.702048 GGCAGTGGACTGGGCGTA 61.702 66.667 8.82 0.00 43.94 4.42
656 3739 4.351054 GGGTGGCAGTGGACTGGG 62.351 72.222 8.82 0.00 43.94 4.45
657 3740 4.704833 CGGGTGGCAGTGGACTGG 62.705 72.222 8.82 0.00 43.94 4.00
698 3781 2.201022 CCTACCGGGGGTGAGATCG 61.201 68.421 6.32 0.00 36.19 3.69
718 3821 1.981256 TTTTGCGCCTCTCTTTTCCT 58.019 45.000 4.18 0.00 0.00 3.36
938 4044 4.154347 CCAGACTGCCGGAGAGCC 62.154 72.222 5.05 0.00 0.00 4.70
1062 4207 1.376037 CACCGACTTCTTCCTGGGC 60.376 63.158 0.00 0.00 0.00 5.36
1236 4381 3.283684 TTGTCCTTGGCGGCGTTG 61.284 61.111 9.37 0.00 0.00 4.10
1297 4442 2.100603 GAGCTCCTCGTCGTTCCG 59.899 66.667 0.87 0.00 0.00 4.30
1374 8603 2.032528 TTCTTGGGGAGCAGCACG 59.967 61.111 0.00 0.00 0.00 5.34
1473 8702 2.507339 GAGCGCATCTCTCTTAAGCT 57.493 50.000 11.47 0.00 38.78 3.74
1490 8719 4.169508 CACACATCCTAAACGACAGAGAG 58.830 47.826 0.00 0.00 0.00 3.20
1494 8723 2.413112 CAGCACACATCCTAAACGACAG 59.587 50.000 0.00 0.00 0.00 3.51
1506 8735 2.135139 CGAACACTACACAGCACACAT 58.865 47.619 0.00 0.00 0.00 3.21
1532 8761 3.070446 ACGGAACACCTTCACATCACTAA 59.930 43.478 0.00 0.00 0.00 2.24
1536 8765 1.691976 AGACGGAACACCTTCACATCA 59.308 47.619 0.00 0.00 0.00 3.07
1538 8767 2.897969 ACTAGACGGAACACCTTCACAT 59.102 45.455 0.00 0.00 0.00 3.21
1539 8768 2.313317 ACTAGACGGAACACCTTCACA 58.687 47.619 0.00 0.00 0.00 3.58
1552 8783 4.174009 CAGGGTACATCAACAACTAGACG 58.826 47.826 0.00 0.00 0.00 4.18
1580 8811 7.014518 ACTGAATTTCTTCCATGAACATGAACA 59.985 33.333 15.21 0.00 41.20 3.18
1581 8812 7.373493 ACTGAATTTCTTCCATGAACATGAAC 58.627 34.615 15.21 0.00 41.20 3.18
1606 8837 8.443176 AGCATATTTGGGAATTCAGAGAGATTA 58.557 33.333 7.93 0.00 0.00 1.75
1614 8845 4.098960 ACAGCAGCATATTTGGGAATTCAG 59.901 41.667 7.93 0.00 0.00 3.02
1621 8853 2.928334 AGAGACAGCAGCATATTTGGG 58.072 47.619 0.00 0.00 0.00 4.12
1656 8888 3.265791 GCGTCAGTGATTCAAATCTCCT 58.734 45.455 0.00 0.00 36.39 3.69
1679 8911 2.203139 CACACGGGCAACAGGTGA 60.203 61.111 0.00 0.00 43.03 4.02
1680 8912 3.286751 CCACACGGGCAACAGGTG 61.287 66.667 0.00 0.00 45.06 4.00
1696 8928 2.147436 TTCGTTTGCCAATTTCAGCC 57.853 45.000 0.00 0.00 0.00 4.85
1720 8952 0.798776 CCGAACAACTGCCATCTGTC 59.201 55.000 0.00 0.00 0.00 3.51
1726 8958 1.073025 ATGAGCCGAACAACTGCCA 59.927 52.632 0.00 0.00 0.00 4.92
1769 9001 4.908601 TGCTTTCTCAAATACTCCTCCA 57.091 40.909 0.00 0.00 0.00 3.86
1773 9005 4.216257 TGCTGTTGCTTTCTCAAATACTCC 59.784 41.667 0.00 0.00 40.48 3.85
1774 9006 5.180117 TCTGCTGTTGCTTTCTCAAATACTC 59.820 40.000 0.00 0.00 40.48 2.59
1775 9007 5.065914 TCTGCTGTTGCTTTCTCAAATACT 58.934 37.500 0.00 0.00 40.48 2.12
1776 9008 5.362556 TCTGCTGTTGCTTTCTCAAATAC 57.637 39.130 0.00 0.00 40.48 1.89
1789 9023 1.512926 AGTTTACCGCTCTGCTGTTG 58.487 50.000 0.00 0.00 0.00 3.33
1791 9025 2.893637 CATAGTTTACCGCTCTGCTGT 58.106 47.619 0.00 0.00 0.00 4.40
1801 9035 5.110940 TCCGTTTTTGTGCATAGTTTACC 57.889 39.130 0.00 0.00 0.00 2.85
1867 9103 3.118408 TCCCTCCGACACAAATTCATAGG 60.118 47.826 0.00 0.00 0.00 2.57
1875 9111 2.940994 TCAATTCCCTCCGACACAAA 57.059 45.000 0.00 0.00 0.00 2.83
1882 9118 3.877508 GACAGGTTATTCAATTCCCTCCG 59.122 47.826 0.00 0.00 0.00 4.63
1908 9144 1.738099 ACAGCGAACGATGTCAGGC 60.738 57.895 12.15 0.00 41.16 4.85
1947 9183 1.468340 GCGTGAACCGTTTGTTGTGC 61.468 55.000 0.00 0.00 37.29 4.57
1987 9223 1.077429 GGAATCACAGGGTCCAGCC 60.077 63.158 0.00 0.00 0.00 4.85
2039 9275 2.359850 TGCACCCAGCCGATGAAC 60.360 61.111 0.00 0.00 44.83 3.18
2041 9277 4.100084 CCTGCACCCAGCCGATGA 62.100 66.667 0.00 0.00 44.83 2.92
2043 9279 4.415150 CACCTGCACCCAGCCGAT 62.415 66.667 0.00 0.00 44.83 4.18
2063 9331 1.622607 CCCGGTAGTGAAGGGCATGA 61.623 60.000 0.00 0.00 38.51 3.07
2084 9352 4.330074 CGTCGCTCCTGTTCAGAAATTAAT 59.670 41.667 1.00 0.00 0.00 1.40
2093 9361 1.215382 CATCCGTCGCTCCTGTTCA 59.785 57.895 0.00 0.00 0.00 3.18
2100 9368 2.725008 CCTCTCCATCCGTCGCTC 59.275 66.667 0.00 0.00 0.00 5.03
2103 9371 1.141881 CAACCCTCTCCATCCGTCG 59.858 63.158 0.00 0.00 0.00 5.12
2106 9374 0.978146 AGGACAACCCTCTCCATCCG 60.978 60.000 0.00 0.00 43.31 4.18
2109 9377 1.273838 TGCTAGGACAACCCTCTCCAT 60.274 52.381 0.00 0.00 43.31 3.41
2123 9391 8.723942 AATACTGTTTACAGAGATTTGCTAGG 57.276 34.615 16.31 0.00 46.59 3.02
2142 9410 0.099968 TCCGAACGGAGCGAATACTG 59.900 55.000 12.04 0.00 39.76 2.74
2149 9417 1.323534 CACTTATTTCCGAACGGAGCG 59.676 52.381 15.34 6.85 46.06 5.03
2185 9506 0.962356 AGCTGGGTCGAGCATTTTGG 60.962 55.000 17.59 0.68 41.83 3.28
2196 9517 3.023949 ATCAGGTCGCAGCTGGGTC 62.024 63.158 27.76 22.58 43.47 4.46
2247 9596 0.764271 TGGTGTGTTGCAGGAGATGA 59.236 50.000 0.00 0.00 0.00 2.92
2310 9659 0.520847 GCAAAGGCTGAGAAGCTGAC 59.479 55.000 0.00 0.00 36.96 3.51
2355 10000 1.201414 GACAATAACAAACGGGCTGGG 59.799 52.381 0.00 0.00 0.00 4.45
2386 10078 2.615747 GGGCTCCAAACTTACTCTGGTC 60.616 54.545 0.00 0.00 0.00 4.02
2387 10079 1.351350 GGGCTCCAAACTTACTCTGGT 59.649 52.381 0.00 0.00 0.00 4.00
2388 10080 1.630878 AGGGCTCCAAACTTACTCTGG 59.369 52.381 0.00 0.00 0.00 3.86
2389 10081 2.303022 TCAGGGCTCCAAACTTACTCTG 59.697 50.000 0.00 0.00 0.00 3.35
2390 10082 2.621070 TCAGGGCTCCAAACTTACTCT 58.379 47.619 0.00 0.00 0.00 3.24
2391 10083 3.274288 CATCAGGGCTCCAAACTTACTC 58.726 50.000 0.00 0.00 0.00 2.59
2392 10084 2.619074 GCATCAGGGCTCCAAACTTACT 60.619 50.000 0.00 0.00 0.00 2.24
2393 10085 1.745653 GCATCAGGGCTCCAAACTTAC 59.254 52.381 0.00 0.00 0.00 2.34
2394 10086 1.678728 CGCATCAGGGCTCCAAACTTA 60.679 52.381 0.00 0.00 0.00 2.24
2395 10087 0.962356 CGCATCAGGGCTCCAAACTT 60.962 55.000 0.00 0.00 0.00 2.66
2396 10088 1.377725 CGCATCAGGGCTCCAAACT 60.378 57.895 0.00 0.00 0.00 2.66
2397 10089 3.190878 CGCATCAGGGCTCCAAAC 58.809 61.111 0.00 0.00 0.00 2.93
2405 10097 2.442643 AATTGGGGCGCATCAGGG 60.443 61.111 10.83 0.00 0.00 4.45
2406 10098 2.788640 CCAATTGGGGCGCATCAGG 61.789 63.158 17.36 3.69 0.00 3.86
2407 10099 2.809706 CCAATTGGGGCGCATCAG 59.190 61.111 17.36 0.00 0.00 2.90
2408 10100 3.459965 GCCAATTGGGGCGCATCA 61.460 61.111 25.73 3.29 45.40 3.07
2415 10107 0.321346 GTTGTTCAGGCCAATTGGGG 59.679 55.000 25.73 1.60 37.04 4.96
2416 10108 1.047002 TGTTGTTCAGGCCAATTGGG 58.953 50.000 25.73 9.65 40.85 4.12
2417 10109 2.482864 GTTGTTGTTCAGGCCAATTGG 58.517 47.619 20.81 20.81 38.53 3.16
2418 10110 2.126467 CGTTGTTGTTCAGGCCAATTG 58.874 47.619 5.01 0.00 0.00 2.32
2419 10111 1.537990 GCGTTGTTGTTCAGGCCAATT 60.538 47.619 5.01 0.00 0.00 2.32
2420 10112 0.031994 GCGTTGTTGTTCAGGCCAAT 59.968 50.000 5.01 0.00 0.00 3.16
2421 10113 1.435515 GCGTTGTTGTTCAGGCCAA 59.564 52.632 5.01 0.00 0.00 4.52
2422 10114 2.485795 GGCGTTGTTGTTCAGGCCA 61.486 57.895 5.01 0.00 42.83 5.36
2423 10115 1.734388 AAGGCGTTGTTGTTCAGGCC 61.734 55.000 0.00 0.00 43.28 5.19
2424 10116 0.102300 AAAGGCGTTGTTGTTCAGGC 59.898 50.000 0.00 0.00 0.00 4.85
2425 10117 2.159310 TCAAAAGGCGTTGTTGTTCAGG 60.159 45.455 0.00 0.00 0.00 3.86
2426 10118 2.851824 GTCAAAAGGCGTTGTTGTTCAG 59.148 45.455 0.00 0.00 0.00 3.02
2427 10119 2.729467 CGTCAAAAGGCGTTGTTGTTCA 60.729 45.455 0.00 0.00 0.00 3.18
2428 10120 1.843753 CGTCAAAAGGCGTTGTTGTTC 59.156 47.619 0.00 0.00 0.00 3.18
2429 10121 1.468395 CCGTCAAAAGGCGTTGTTGTT 60.468 47.619 0.00 0.00 0.00 2.83
2430 10122 0.099791 CCGTCAAAAGGCGTTGTTGT 59.900 50.000 0.00 0.00 0.00 3.32
2431 10123 1.206115 GCCGTCAAAAGGCGTTGTTG 61.206 55.000 0.00 0.56 45.58 3.33
2432 10124 1.065109 GCCGTCAAAAGGCGTTGTT 59.935 52.632 0.00 0.00 45.58 2.83
2433 10125 2.719354 GCCGTCAAAAGGCGTTGT 59.281 55.556 0.00 0.00 45.58 3.32
2439 10131 1.202348 GGAATTGGAGCCGTCAAAAGG 59.798 52.381 0.00 0.00 0.00 3.11
2440 10132 2.095059 CAGGAATTGGAGCCGTCAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
2441 10133 1.885887 CAGGAATTGGAGCCGTCAAAA 59.114 47.619 0.00 0.00 0.00 2.44
2442 10134 1.073125 TCAGGAATTGGAGCCGTCAAA 59.927 47.619 0.00 0.00 0.00 2.69
2443 10135 0.690192 TCAGGAATTGGAGCCGTCAA 59.310 50.000 0.00 0.00 0.00 3.18
2444 10136 0.250234 CTCAGGAATTGGAGCCGTCA 59.750 55.000 0.00 0.00 0.00 4.35
2445 10137 0.537188 TCTCAGGAATTGGAGCCGTC 59.463 55.000 0.00 0.00 0.00 4.79
2446 10138 0.539051 CTCTCAGGAATTGGAGCCGT 59.461 55.000 0.00 0.00 0.00 5.68
2447 10139 0.813210 GCTCTCAGGAATTGGAGCCG 60.813 60.000 0.00 0.00 40.90 5.52
2448 10140 0.254178 TGCTCTCAGGAATTGGAGCC 59.746 55.000 10.59 0.00 43.58 4.70
2449 10141 1.666054 CTGCTCTCAGGAATTGGAGC 58.334 55.000 6.82 6.82 44.05 4.70
2450 10142 1.666054 GCTGCTCTCAGGAATTGGAG 58.334 55.000 0.00 0.00 40.65 3.86
2451 10143 0.254178 GGCTGCTCTCAGGAATTGGA 59.746 55.000 0.00 0.00 40.65 3.53
2452 10144 0.750911 GGGCTGCTCTCAGGAATTGG 60.751 60.000 0.00 0.00 40.65 3.16
2453 10145 0.255318 AGGGCTGCTCTCAGGAATTG 59.745 55.000 0.00 0.00 40.65 2.32
2454 10146 0.255318 CAGGGCTGCTCTCAGGAATT 59.745 55.000 0.00 0.00 40.65 2.17
2455 10147 0.619832 TCAGGGCTGCTCTCAGGAAT 60.620 55.000 0.00 0.00 40.65 3.01
2456 10148 0.837691 TTCAGGGCTGCTCTCAGGAA 60.838 55.000 0.00 0.00 40.65 3.36
2457 10149 0.619832 ATTCAGGGCTGCTCTCAGGA 60.620 55.000 0.00 0.00 40.65 3.86
2458 10150 0.179051 GATTCAGGGCTGCTCTCAGG 60.179 60.000 0.00 0.00 40.65 3.86
2459 10151 0.179051 GGATTCAGGGCTGCTCTCAG 60.179 60.000 0.00 0.00 43.16 3.35
2460 10152 1.630126 GGGATTCAGGGCTGCTCTCA 61.630 60.000 0.00 0.00 0.00 3.27
2461 10153 1.148048 GGGATTCAGGGCTGCTCTC 59.852 63.158 0.00 0.00 0.00 3.20
2462 10154 3.329093 GGGATTCAGGGCTGCTCT 58.671 61.111 0.00 0.00 0.00 4.09



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.