Multiple sequence alignment - TraesCS5A01G246200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5A01G246200
chr5A
100.000
2480
0
0
1
2480
459541680
459544159
0.000000e+00
4580.0
1
TraesCS5A01G246200
chr5D
86.445
2228
192
33
7
2177
358797379
358799553
0.000000e+00
2340.0
2
TraesCS5A01G246200
chr5D
92.903
155
6
2
2210
2360
358799667
358799820
1.150000e-53
220.0
3
TraesCS5A01G246200
chr5D
100.000
29
0
0
2358
2386
358799865
358799893
1.000000e-03
54.7
4
TraesCS5A01G246200
chr5B
88.938
1347
116
23
700
2039
423795885
423797205
0.000000e+00
1631.0
5
TraesCS5A01G246200
chr5B
82.751
429
55
10
9
432
423792116
423792530
5.040000e-97
364.0
6
TraesCS5A01G246200
chr5B
94.915
118
4
2
2210
2326
423797406
423797522
1.510000e-42
183.0
7
TraesCS5A01G246200
chr5B
97.297
37
1
0
2319
2355
423797806
423797842
2.060000e-06
63.9
8
TraesCS5A01G246200
chr4B
85.146
754
82
23
733
1463
436098192
436098938
0.000000e+00
745.0
9
TraesCS5A01G246200
chr4B
94.796
442
23
0
1022
1463
436102581
436103022
0.000000e+00
689.0
10
TraesCS5A01G246200
chr4B
83.051
118
20
0
117
234
10898054
10898171
9.380000e-20
108.0
11
TraesCS5A01G246200
chr4A
84.656
756
84
26
733
1463
112858345
112857597
0.000000e+00
725.0
12
TraesCS5A01G246200
chr4A
94.989
439
22
0
1025
1463
112853360
112852922
0.000000e+00
689.0
13
TraesCS5A01G246200
chr4A
94.931
434
22
0
1025
1458
112847011
112846578
0.000000e+00
680.0
14
TraesCS5A01G246200
chr4D
95.023
442
22
0
1022
1463
352580006
352580447
0.000000e+00
695.0
15
TraesCS5A01G246200
chr4D
85.263
95
14
0
117
211
42123456
42123362
5.640000e-17
99.0
16
TraesCS5A01G246200
chr6B
91.435
467
34
3
998
1458
145043635
145044101
9.670000e-179
636.0
17
TraesCS5A01G246200
chr1D
80.791
354
51
9
29
377
445388334
445388675
6.800000e-66
261.0
18
TraesCS5A01G246200
chr2D
76.075
372
61
20
107
458
245386731
245386368
4.240000e-38
169.0
19
TraesCS5A01G246200
chr3A
78.733
221
35
5
29
247
662954838
662955048
1.200000e-28
137.0
20
TraesCS5A01G246200
chr6A
78.733
221
26
11
256
457
521856938
521856720
7.200000e-26
128.0
21
TraesCS5A01G246200
chr3D
82.022
89
16
0
257
345
26035047
26034959
2.640000e-10
76.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5A01G246200
chr5A
459541680
459544159
2479
False
4580.000000
4580
100.00000
1
2480
1
chr5A.!!$F1
2479
1
TraesCS5A01G246200
chr5D
358797379
358799893
2514
False
871.566667
2340
93.11600
7
2386
3
chr5D.!!$F1
2379
2
TraesCS5A01G246200
chr5B
423792116
423797842
5726
False
560.475000
1631
90.97525
9
2355
4
chr5B.!!$F1
2346
3
TraesCS5A01G246200
chr4B
436098192
436103022
4830
False
717.000000
745
89.97100
733
1463
2
chr4B.!!$F2
730
4
TraesCS5A01G246200
chr4A
112857597
112858345
748
True
725.000000
725
84.65600
733
1463
1
chr4A.!!$R3
730
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
241
242
0.392595
CAGAGATGAAGCTGCAGCCA
60.393
55.0
34.39
25.76
43.38
4.75
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2142
9410
0.099968
TCCGAACGGAGCGAATACTG
59.9
55.0
12.04
0.0
39.76
2.74
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
36
37
1.476110
CGTTTCCCAACACTTCCTCCA
60.476
52.381
0.00
0.00
32.54
3.86
41
42
1.450211
CAACACTTCCTCCACCCGT
59.550
57.895
0.00
0.00
0.00
5.28
76
77
2.543067
GAAGGGAGCAGGCGTGGATT
62.543
60.000
8.72
0.00
0.00
3.01
99
100
4.446413
CGCCCGCTCCCGTAGTTT
62.446
66.667
0.00
0.00
0.00
2.66
100
101
2.046604
GCCCGCTCCCGTAGTTTT
60.047
61.111
0.00
0.00
0.00
2.43
101
102
1.673337
GCCCGCTCCCGTAGTTTTT
60.673
57.895
0.00
0.00
0.00
1.94
132
133
3.860930
ATGGGCGTGGGCGAACTTT
62.861
57.895
0.00
0.00
41.24
2.66
133
134
3.733960
GGGCGTGGGCGAACTTTC
61.734
66.667
0.00
0.00
41.24
2.62
158
159
1.021202
CTCGACCGCATCTTCTCTCT
58.979
55.000
0.00
0.00
0.00
3.10
165
166
1.558741
GCATCTTCTCTCTGTCGCTG
58.441
55.000
0.00
0.00
0.00
5.18
211
212
2.610859
GGTGGGAGGCCAAGGAGA
60.611
66.667
5.01
0.00
0.00
3.71
213
214
2.610859
TGGGAGGCCAAGGAGACC
60.611
66.667
5.01
0.00
0.00
3.85
214
215
2.610859
GGGAGGCCAAGGAGACCA
60.611
66.667
5.01
0.00
0.00
4.02
216
217
1.920835
GGAGGCCAAGGAGACCACT
60.921
63.158
5.01
0.00
0.00
4.00
217
218
0.617820
GGAGGCCAAGGAGACCACTA
60.618
60.000
5.01
0.00
0.00
2.74
223
224
1.229082
AAGGAGACCACTACCGCCA
60.229
57.895
0.00
0.00
0.00
5.69
237
238
1.449070
CGCCAGAGATGAAGCTGCA
60.449
57.895
0.00
0.00
0.00
4.41
241
242
0.392595
CAGAGATGAAGCTGCAGCCA
60.393
55.000
34.39
25.76
43.38
4.75
264
265
2.564975
GTCCCGACGCTCTTCGAA
59.435
61.111
0.00
0.00
41.78
3.71
277
278
2.614520
CTCTTCGAAGAGTATCGGCTCA
59.385
50.000
36.43
10.20
45.84
4.26
283
285
2.616634
AGAGTATCGGCTCACGTAGA
57.383
50.000
0.00
0.00
44.69
2.59
312
314
0.676782
GCACCCTCATGTACCACCAC
60.677
60.000
0.00
0.00
0.00
4.16
378
386
8.712285
AGTATGCTAGTATGCTTTTCGTTTAA
57.288
30.769
5.61
0.00
0.00
1.52
419
429
7.043565
TCGGTTTGTATTAAGTATGAACTCCC
58.956
38.462
0.00
0.00
33.75
4.30
443
3377
3.452755
TGGCATGTAGTATGAACTCCG
57.547
47.619
0.00
0.00
37.15
4.63
461
3416
2.427812
TCCGGTGATCTATGTTTACGCA
59.572
45.455
0.00
0.00
0.00
5.24
478
3433
9.527566
TGTTTACGCACGAACTATAAATTTAAC
57.472
29.630
1.21
0.00
0.00
2.01
487
3442
8.545420
ACGAACTATAAATTTAACTATGCGGTG
58.455
33.333
1.21
0.00
0.00
4.94
490
3445
9.609346
AACTATAAATTTAACTATGCGGTGTCT
57.391
29.630
1.21
0.00
0.00
3.41
509
3464
7.175119
CGGTGTCTGTATGAAGGATCTATTCTA
59.825
40.741
11.00
1.51
0.00
2.10
511
3466
8.026607
GTGTCTGTATGAAGGATCTATTCTAGC
58.973
40.741
11.00
0.00
0.00
3.42
521
3476
6.069331
AGGATCTATTCTAGCTAAACGTCCA
58.931
40.000
0.00
0.00
0.00
4.02
522
3477
6.207810
AGGATCTATTCTAGCTAAACGTCCAG
59.792
42.308
0.00
0.00
0.00
3.86
524
3479
2.273370
TTCTAGCTAAACGTCCAGCG
57.727
50.000
13.75
3.62
42.74
5.18
537
3492
4.141855
CGTCCAGCGTTCTACAAAAATT
57.858
40.909
0.00
0.00
35.54
1.82
544
3499
5.746245
CAGCGTTCTACAAAAATTGTTTCCA
59.254
36.000
0.54
0.00
42.22
3.53
547
3502
7.494298
AGCGTTCTACAAAAATTGTTTCCAAAT
59.506
29.630
0.54
0.00
42.22
2.32
548
3503
8.756864
GCGTTCTACAAAAATTGTTTCCAAATA
58.243
29.630
0.54
0.00
42.22
1.40
563
3519
8.077386
TGTTTCCAAATATTGTAACCGAGTTTC
58.923
33.333
0.00
0.00
0.00
2.78
604
3560
3.255642
GGACCTGCTAGAGATGCTCTTAG
59.744
52.174
1.88
0.38
41.50
2.18
617
3573
3.073144
GCTCTTAGCAAGTCGGAGTAG
57.927
52.381
0.00
0.00
41.89
2.57
619
3575
3.626670
GCTCTTAGCAAGTCGGAGTAGTA
59.373
47.826
0.00
0.00
41.89
1.82
620
3576
4.496175
GCTCTTAGCAAGTCGGAGTAGTAC
60.496
50.000
0.00
0.00
41.89
2.73
621
3577
4.841422
TCTTAGCAAGTCGGAGTAGTACT
58.159
43.478
1.37
1.37
0.00
2.73
667
3750
1.215647
GAGTACGCCCAGTCCACTG
59.784
63.158
0.00
0.00
43.40
3.66
718
3821
3.326385
ATCTCACCCCCGGTAGGCA
62.326
63.158
7.67
0.00
32.11
4.75
725
3828
1.077716
CCCCGGTAGGCAGGAAAAG
60.078
63.158
0.00
0.00
35.76
2.27
828
3931
4.796231
GCATCGCGTCCGTCCACT
62.796
66.667
5.77
0.00
35.54
4.00
1041
4186
4.048470
AAGGGGAAGAAGGGCGCC
62.048
66.667
21.18
21.18
37.38
6.53
1083
4228
0.037232
CCAGGAAGAAGTCGGTGACC
60.037
60.000
0.00
0.00
32.18
4.02
1119
4264
2.995574
CTCCAGTTCCCCGTCGGT
60.996
66.667
11.06
0.00
0.00
4.69
1374
8603
0.926293
TCATCCCCAAGATCAACCCC
59.074
55.000
0.00
0.00
30.59
4.95
1490
8719
3.194062
AGAAAGCTTAAGAGAGATGCGC
58.806
45.455
6.67
0.00
0.00
6.09
1506
8735
0.170561
GCGCTCTCTGTCGTTTAGGA
59.829
55.000
0.00
0.00
0.00
2.94
1532
8761
2.296190
TGCTGTGTAGTGTTCGTCTGAT
59.704
45.455
0.00
0.00
0.00
2.90
1536
8765
5.700722
TGTGTAGTGTTCGTCTGATTAGT
57.299
39.130
0.00
0.00
0.00
2.24
1538
8767
5.239963
TGTGTAGTGTTCGTCTGATTAGTGA
59.760
40.000
0.00
0.00
0.00
3.41
1539
8768
6.072119
TGTGTAGTGTTCGTCTGATTAGTGAT
60.072
38.462
0.00
0.00
0.00
3.06
1552
8783
5.245531
TGATTAGTGATGTGAAGGTGTTCC
58.754
41.667
0.00
0.00
0.00
3.62
1580
8811
3.569194
TGTTGATGTACCCTGTGTTGT
57.431
42.857
0.00
0.00
0.00
3.32
1581
8812
3.210227
TGTTGATGTACCCTGTGTTGTG
58.790
45.455
0.00
0.00
0.00
3.33
1606
8837
7.014518
TGTTCATGTTCATGGAAGAAATTCAGT
59.985
33.333
12.02
0.00
0.00
3.41
1614
8845
8.954950
TCATGGAAGAAATTCAGTAATCTCTC
57.045
34.615
0.00
0.00
0.00
3.20
1656
8888
3.807553
TGTCTCTTTGAGTCATTGCACA
58.192
40.909
0.00
0.00
0.00
4.57
1675
8907
4.142730
GCACAGGAGATTTGAATCACTGAC
60.143
45.833
23.31
15.63
41.32
3.51
1679
8911
2.668457
GAGATTTGAATCACTGACGCGT
59.332
45.455
13.85
13.85
37.89
6.01
1680
8912
2.668457
AGATTTGAATCACTGACGCGTC
59.332
45.455
31.66
31.66
37.89
5.19
1683
8915
0.666274
TGAATCACTGACGCGTCACC
60.666
55.000
36.40
20.13
35.46
4.02
1696
8928
2.203139
TCACCTGTTGCCCGTGTG
60.203
61.111
0.00
0.00
0.00
3.82
1720
8952
4.905295
GCTGAAATTGGCAAACGAATTTTG
59.095
37.500
3.01
0.00
46.57
2.44
1769
9001
4.623932
TGTGGATTCAGTTTACTGCTCT
57.376
40.909
5.00
0.00
43.46
4.09
1773
9005
4.187694
GGATTCAGTTTACTGCTCTGGAG
58.812
47.826
5.00
0.00
43.46
3.86
1774
9006
3.685139
TTCAGTTTACTGCTCTGGAGG
57.315
47.619
5.00
0.00
43.46
4.30
1775
9007
2.889512
TCAGTTTACTGCTCTGGAGGA
58.110
47.619
5.00
0.00
43.46
3.71
1789
9023
5.091261
TCTGGAGGAGTATTTGAGAAAGC
57.909
43.478
0.00
0.00
0.00
3.51
1791
9025
5.013079
TCTGGAGGAGTATTTGAGAAAGCAA
59.987
40.000
0.00
0.00
0.00
3.91
1801
9035
0.165511
GAGAAAGCAACAGCAGAGCG
59.834
55.000
0.00
0.00
0.00
5.03
1882
9118
8.871686
AAAAACACTTCCTATGAATTTGTGTC
57.128
30.769
0.00
0.00
36.77
3.67
1908
9144
6.183360
GGAGGGAATTGAATAACCTGTCAATG
60.183
42.308
5.44
0.00
42.30
2.82
1987
9223
0.039074
ACAGAAGTCGCCTTGTCTCG
60.039
55.000
0.00
0.00
0.00
4.04
2039
9275
4.803426
GCAGACGACTCCGGGCTG
62.803
72.222
0.00
0.00
41.76
4.85
2041
9277
2.600769
AGACGACTCCGGGCTGTT
60.601
61.111
0.00
0.00
40.78
3.16
2043
9279
2.915659
ACGACTCCGGGCTGTTCA
60.916
61.111
0.00
0.00
40.78
3.18
2045
9281
1.519455
CGACTCCGGGCTGTTCATC
60.519
63.158
0.00
0.00
0.00
2.92
2084
9352
2.686106
GCCCTTCACTACCGGGGA
60.686
66.667
6.32
0.00
41.25
4.81
2093
9361
5.397559
CCTTCACTACCGGGGATTAATTTCT
60.398
44.000
6.32
0.00
0.00
2.52
2100
9368
3.632145
CCGGGGATTAATTTCTGAACAGG
59.368
47.826
0.00
0.00
0.00
4.00
2103
9371
4.339530
GGGGATTAATTTCTGAACAGGAGC
59.660
45.833
1.93
0.00
0.00
4.70
2106
9374
5.220681
GGATTAATTTCTGAACAGGAGCGAC
60.221
44.000
1.93
0.00
0.00
5.19
2109
9377
1.176619
TTCTGAACAGGAGCGACGGA
61.177
55.000
0.00
0.00
0.00
4.69
2123
9391
0.175989
GACGGATGGAGAGGGTTGTC
59.824
60.000
0.00
0.00
0.00
3.18
2142
9410
6.128254
GGTTGTCCTAGCAAATCTCTGTAAAC
60.128
42.308
0.00
0.00
0.00
2.01
2149
9417
8.821894
CCTAGCAAATCTCTGTAAACAGTATTC
58.178
37.037
9.81
2.35
44.12
1.75
2185
9506
0.668706
AGTGACGCTGTCAGTGATGC
60.669
55.000
20.13
9.09
43.53
3.91
2196
9517
1.469703
TCAGTGATGCCAAAATGCTCG
59.530
47.619
0.00
0.00
0.00
5.03
2201
9522
0.611618
ATGCCAAAATGCTCGACCCA
60.612
50.000
0.00
0.00
0.00
4.51
2203
9524
1.508088
CCAAAATGCTCGACCCAGC
59.492
57.895
0.00
0.00
40.13
4.85
2206
9527
1.589716
AAAATGCTCGACCCAGCTGC
61.590
55.000
8.66
0.00
40.39
5.25
2289
9638
3.056250
TCTGATCTTTGCTCTTCTTCGCT
60.056
43.478
0.00
0.00
0.00
4.93
2310
9659
1.338864
ACATTGCAGTCTGCCAGAGAG
60.339
52.381
21.99
8.49
44.23
3.20
2355
10000
3.883489
AGCAAACTTACTGAAGGTGAACC
59.117
43.478
0.00
0.00
36.95
3.62
2386
10078
4.775058
TTGTTATTGTCAATTGGGACGG
57.225
40.909
5.42
0.00
40.72
4.79
2387
10079
4.022413
TGTTATTGTCAATTGGGACGGA
57.978
40.909
5.42
0.00
40.72
4.69
2388
10080
3.754323
TGTTATTGTCAATTGGGACGGAC
59.246
43.478
5.42
0.00
40.72
4.79
2389
10081
1.834188
ATTGTCAATTGGGACGGACC
58.166
50.000
5.42
0.00
40.72
4.46
2390
10082
0.474614
TTGTCAATTGGGACGGACCA
59.525
50.000
5.42
0.00
40.72
4.02
2391
10083
0.036164
TGTCAATTGGGACGGACCAG
59.964
55.000
5.42
0.00
42.47
4.00
2392
10084
0.323629
GTCAATTGGGACGGACCAGA
59.676
55.000
5.42
0.00
42.47
3.86
2393
10085
0.613260
TCAATTGGGACGGACCAGAG
59.387
55.000
5.42
0.00
42.47
3.35
2394
10086
0.324943
CAATTGGGACGGACCAGAGT
59.675
55.000
0.00
0.00
42.47
3.24
2395
10087
1.553248
CAATTGGGACGGACCAGAGTA
59.447
52.381
0.00
0.00
42.47
2.59
2396
10088
1.946984
ATTGGGACGGACCAGAGTAA
58.053
50.000
0.00
0.00
42.47
2.24
2397
10089
1.263356
TTGGGACGGACCAGAGTAAG
58.737
55.000
0.00
0.00
42.47
2.34
2398
10090
0.113776
TGGGACGGACCAGAGTAAGT
59.886
55.000
0.00
0.00
41.20
2.24
2399
10091
1.264295
GGGACGGACCAGAGTAAGTT
58.736
55.000
0.00
0.00
41.20
2.66
2400
10092
1.622312
GGGACGGACCAGAGTAAGTTT
59.378
52.381
0.00
0.00
41.20
2.66
2401
10093
2.612221
GGGACGGACCAGAGTAAGTTTG
60.612
54.545
0.00
0.00
41.20
2.93
2402
10094
2.612221
GGACGGACCAGAGTAAGTTTGG
60.612
54.545
0.00
0.00
38.79
3.28
2403
10095
2.298163
GACGGACCAGAGTAAGTTTGGA
59.702
50.000
0.00
0.00
35.89
3.53
2404
10096
2.299297
ACGGACCAGAGTAAGTTTGGAG
59.701
50.000
0.00
0.00
35.89
3.86
2405
10097
2.701107
GGACCAGAGTAAGTTTGGAGC
58.299
52.381
0.00
0.00
35.89
4.70
2406
10098
2.615747
GGACCAGAGTAAGTTTGGAGCC
60.616
54.545
0.00
0.00
35.89
4.70
2407
10099
1.351350
ACCAGAGTAAGTTTGGAGCCC
59.649
52.381
0.00
0.00
35.89
5.19
2408
10100
1.630878
CCAGAGTAAGTTTGGAGCCCT
59.369
52.381
0.00
0.00
33.76
5.19
2409
10101
2.616510
CCAGAGTAAGTTTGGAGCCCTG
60.617
54.545
0.00
0.00
33.76
4.45
2410
10102
2.303022
CAGAGTAAGTTTGGAGCCCTGA
59.697
50.000
0.00
0.00
0.00
3.86
2411
10103
3.054802
CAGAGTAAGTTTGGAGCCCTGAT
60.055
47.826
0.00
0.00
0.00
2.90
2412
10104
3.054802
AGAGTAAGTTTGGAGCCCTGATG
60.055
47.826
0.00
0.00
0.00
3.07
2413
10105
1.745653
GTAAGTTTGGAGCCCTGATGC
59.254
52.381
0.00
0.00
0.00
3.91
2414
10106
0.962356
AAGTTTGGAGCCCTGATGCG
60.962
55.000
0.00
0.00
36.02
4.73
2415
10107
2.751436
TTTGGAGCCCTGATGCGC
60.751
61.111
0.00
0.00
36.02
6.09
2422
10114
2.442643
CCCTGATGCGCCCCAATT
60.443
61.111
4.18
0.00
0.00
2.32
2423
10115
2.788640
CCCTGATGCGCCCCAATTG
61.789
63.158
4.18
0.00
0.00
2.32
2424
10116
2.788640
CCTGATGCGCCCCAATTGG
61.789
63.158
18.21
18.21
0.00
3.16
2431
10123
2.981302
GCCCCAATTGGCCTGAAC
59.019
61.111
19.75
0.21
46.11
3.18
2432
10124
1.912763
GCCCCAATTGGCCTGAACA
60.913
57.895
19.75
0.00
46.11
3.18
2433
10125
1.479368
GCCCCAATTGGCCTGAACAA
61.479
55.000
19.75
0.00
46.11
2.83
2434
10126
0.321346
CCCCAATTGGCCTGAACAAC
59.679
55.000
19.75
0.00
0.00
3.32
2435
10127
1.047002
CCCAATTGGCCTGAACAACA
58.953
50.000
19.75
0.00
0.00
3.33
2436
10128
1.415659
CCCAATTGGCCTGAACAACAA
59.584
47.619
19.75
0.00
0.00
2.83
2437
10129
2.482864
CCAATTGGCCTGAACAACAAC
58.517
47.619
12.53
0.00
0.00
3.32
2438
10130
2.126467
CAATTGGCCTGAACAACAACG
58.874
47.619
3.32
0.00
0.00
4.10
2439
10131
0.031994
ATTGGCCTGAACAACAACGC
59.968
50.000
3.32
0.00
0.00
4.84
2440
10132
2.010582
TTGGCCTGAACAACAACGCC
62.011
55.000
3.32
0.00
41.56
5.68
2441
10133
2.193536
GGCCTGAACAACAACGCCT
61.194
57.895
0.00
0.00
39.49
5.52
2442
10134
1.733526
GCCTGAACAACAACGCCTT
59.266
52.632
0.00
0.00
0.00
4.35
2443
10135
0.102300
GCCTGAACAACAACGCCTTT
59.898
50.000
0.00
0.00
0.00
3.11
2444
10136
1.470805
GCCTGAACAACAACGCCTTTT
60.471
47.619
0.00
0.00
0.00
2.27
2445
10137
2.192624
CCTGAACAACAACGCCTTTTG
58.807
47.619
0.00
0.00
0.00
2.44
2446
10138
2.159310
CCTGAACAACAACGCCTTTTGA
60.159
45.455
0.00
0.00
0.00
2.69
2447
10139
2.851824
CTGAACAACAACGCCTTTTGAC
59.148
45.455
0.00
0.00
0.00
3.18
2448
10140
1.843753
GAACAACAACGCCTTTTGACG
59.156
47.619
0.00
0.00
0.00
4.35
2449
10141
0.099791
ACAACAACGCCTTTTGACGG
59.900
50.000
0.00
0.00
0.00
4.79
2450
10142
1.065109
AACAACGCCTTTTGACGGC
59.935
52.632
0.00
0.00
44.11
5.68
2451
10143
1.381165
AACAACGCCTTTTGACGGCT
61.381
50.000
0.00
0.00
45.37
5.52
2452
10144
1.082104
CAACGCCTTTTGACGGCTC
60.082
57.895
0.00
0.00
45.37
4.70
2453
10145
2.258726
AACGCCTTTTGACGGCTCC
61.259
57.895
0.00
0.00
45.37
4.70
2454
10146
2.668212
CGCCTTTTGACGGCTCCA
60.668
61.111
0.00
0.00
45.37
3.86
2455
10147
2.258013
CGCCTTTTGACGGCTCCAA
61.258
57.895
0.00
0.00
45.37
3.53
2456
10148
1.586154
CGCCTTTTGACGGCTCCAAT
61.586
55.000
0.00
0.00
45.37
3.16
2457
10149
0.603065
GCCTTTTGACGGCTCCAATT
59.397
50.000
0.00
0.00
44.17
2.32
2458
10150
1.402852
GCCTTTTGACGGCTCCAATTC
60.403
52.381
0.00
0.00
44.17
2.17
2459
10151
1.202348
CCTTTTGACGGCTCCAATTCC
59.798
52.381
0.00
0.00
0.00
3.01
2460
10152
2.162681
CTTTTGACGGCTCCAATTCCT
58.837
47.619
0.00
0.00
0.00
3.36
2461
10153
1.533625
TTTGACGGCTCCAATTCCTG
58.466
50.000
0.00
0.00
0.00
3.86
2462
10154
0.690192
TTGACGGCTCCAATTCCTGA
59.310
50.000
0.00
0.00
0.00
3.86
2463
10155
0.250234
TGACGGCTCCAATTCCTGAG
59.750
55.000
0.00
0.00
0.00
3.35
2464
10156
0.537188
GACGGCTCCAATTCCTGAGA
59.463
55.000
0.00
0.00
0.00
3.27
2465
10157
0.539051
ACGGCTCCAATTCCTGAGAG
59.461
55.000
0.00
0.00
0.00
3.20
2466
10158
0.813210
CGGCTCCAATTCCTGAGAGC
60.813
60.000
2.28
2.28
42.79
4.09
2467
10159
0.254178
GGCTCCAATTCCTGAGAGCA
59.746
55.000
12.41
0.00
44.12
4.26
2468
10160
1.666054
GCTCCAATTCCTGAGAGCAG
58.334
55.000
6.00
0.00
42.92
4.24
2469
10161
1.666054
CTCCAATTCCTGAGAGCAGC
58.334
55.000
0.00
0.00
40.91
5.25
2470
10162
0.254178
TCCAATTCCTGAGAGCAGCC
59.746
55.000
0.00
0.00
40.91
4.85
2471
10163
0.750911
CCAATTCCTGAGAGCAGCCC
60.751
60.000
0.00
0.00
40.91
5.19
2472
10164
0.255318
CAATTCCTGAGAGCAGCCCT
59.745
55.000
0.00
0.00
40.91
5.19
2473
10165
0.255318
AATTCCTGAGAGCAGCCCTG
59.745
55.000
0.00
0.00
40.91
4.45
2474
10166
0.619832
ATTCCTGAGAGCAGCCCTGA
60.620
55.000
0.00
0.00
40.91
3.86
2475
10167
0.837691
TTCCTGAGAGCAGCCCTGAA
60.838
55.000
0.00
0.00
40.91
3.02
2476
10168
0.619832
TCCTGAGAGCAGCCCTGAAT
60.620
55.000
0.00
0.00
40.91
2.57
2477
10169
0.179051
CCTGAGAGCAGCCCTGAATC
60.179
60.000
0.00
0.00
40.91
2.52
2478
10170
0.179051
CTGAGAGCAGCCCTGAATCC
60.179
60.000
0.00
0.00
34.95
3.01
2479
10171
1.148048
GAGAGCAGCCCTGAATCCC
59.852
63.158
0.00
0.00
0.00
3.85
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
7
8
3.762823
AGTGTTGGGAAACGTGGTAAAAA
59.237
39.130
0.00
0.00
0.00
1.94
9
10
3.002038
AGTGTTGGGAAACGTGGTAAA
57.998
42.857
0.00
0.00
0.00
2.01
10
11
2.713863
AGTGTTGGGAAACGTGGTAA
57.286
45.000
0.00
0.00
0.00
2.85
11
12
2.563702
GAAGTGTTGGGAAACGTGGTA
58.436
47.619
0.00
0.00
0.00
3.25
12
13
1.385528
GAAGTGTTGGGAAACGTGGT
58.614
50.000
0.00
0.00
0.00
4.16
13
14
0.666374
GGAAGTGTTGGGAAACGTGG
59.334
55.000
0.00
0.00
0.00
4.94
14
15
1.602377
GAGGAAGTGTTGGGAAACGTG
59.398
52.381
0.00
0.00
0.00
4.49
41
42
2.448153
CTTCGTCGTTCGTCCACCGA
62.448
60.000
0.00
0.00
45.66
4.69
115
116
4.572571
AAAGTTCGCCCACGCCCA
62.573
61.111
0.00
0.00
39.84
5.36
135
136
1.066303
GAGAAGATGCGGTCGAGACAT
59.934
52.381
5.55
0.00
0.00
3.06
136
137
0.452184
GAGAAGATGCGGTCGAGACA
59.548
55.000
5.55
0.00
0.00
3.41
138
139
1.018148
GAGAGAAGATGCGGTCGAGA
58.982
55.000
0.00
0.00
0.00
4.04
172
173
4.194720
CTTCTCCGCCTCCCGACG
62.195
72.222
0.00
0.00
40.02
5.12
211
212
0.324368
TCATCTCTGGCGGTAGTGGT
60.324
55.000
0.00
0.00
0.00
4.16
213
214
1.804372
GCTTCATCTCTGGCGGTAGTG
60.804
57.143
0.00
0.00
0.00
2.74
214
215
0.461961
GCTTCATCTCTGGCGGTAGT
59.538
55.000
0.00
0.00
0.00
2.73
216
217
0.461548
CAGCTTCATCTCTGGCGGTA
59.538
55.000
0.00
0.00
0.00
4.02
217
218
1.220206
CAGCTTCATCTCTGGCGGT
59.780
57.895
0.00
0.00
0.00
5.68
223
224
0.392729
GTGGCTGCAGCTTCATCTCT
60.393
55.000
35.82
0.00
41.70
3.10
262
263
2.871022
TCTACGTGAGCCGATACTCTTC
59.129
50.000
0.00
0.00
40.70
2.87
264
265
2.616634
TCTACGTGAGCCGATACTCT
57.383
50.000
0.00
0.00
40.70
3.24
283
285
0.030297
ATGAGGGTGCTGGAGAGGAT
60.030
55.000
0.00
0.00
0.00
3.24
351
359
8.888579
AAACGAAAAGCATACTAGCATACTAT
57.111
30.769
0.00
0.00
36.85
2.12
419
429
4.923871
GGAGTTCATACTACATGCCATACG
59.076
45.833
0.00
0.00
35.12
3.06
443
3377
3.441163
TCGTGCGTAAACATAGATCACC
58.559
45.455
0.00
0.00
0.00
4.02
461
3416
8.545420
CACCGCATAGTTAAATTTATAGTTCGT
58.455
33.333
0.00
0.00
0.00
3.85
476
3431
4.433615
CTTCATACAGACACCGCATAGTT
58.566
43.478
0.00
0.00
0.00
2.24
478
3433
3.068165
TCCTTCATACAGACACCGCATAG
59.932
47.826
0.00
0.00
0.00
2.23
487
3442
8.348285
AGCTAGAATAGATCCTTCATACAGAC
57.652
38.462
0.00
0.00
42.77
3.51
521
3476
5.897050
TGGAAACAATTTTTGTAGAACGCT
58.103
33.333
0.00
0.00
44.59
5.07
537
3492
7.513371
AACTCGGTTACAATATTTGGAAACA
57.487
32.000
1.52
0.00
41.40
2.83
544
3499
4.201744
CCGCGAAACTCGGTTACAATATTT
60.202
41.667
8.23
0.00
40.84
1.40
547
3502
2.261345
CCGCGAAACTCGGTTACAATA
58.739
47.619
8.23
0.00
40.84
1.90
548
3503
1.073177
CCGCGAAACTCGGTTACAAT
58.927
50.000
8.23
0.00
40.84
2.71
549
3504
0.945265
CCCGCGAAACTCGGTTACAA
60.945
55.000
8.23
0.00
45.09
2.41
550
3505
1.373246
CCCGCGAAACTCGGTTACA
60.373
57.895
8.23
0.00
45.09
2.41
551
3506
1.080569
TCCCGCGAAACTCGGTTAC
60.081
57.895
8.23
0.00
45.09
2.50
552
3507
1.080569
GTCCCGCGAAACTCGGTTA
60.081
57.895
8.23
0.00
45.09
2.85
553
3508
2.356673
GTCCCGCGAAACTCGGTT
60.357
61.111
8.23
0.00
45.09
4.44
604
3560
4.872691
TGTACTAGTACTACTCCGACTTGC
59.127
45.833
28.56
3.05
37.00
4.01
607
3563
4.141824
GGGTGTACTAGTACTACTCCGACT
60.142
50.000
28.56
0.00
37.00
4.18
608
3564
4.123506
GGGTGTACTAGTACTACTCCGAC
58.876
52.174
28.56
18.06
37.00
4.79
609
3565
3.774766
TGGGTGTACTAGTACTACTCCGA
59.225
47.826
28.56
19.70
37.00
4.55
610
3566
4.125703
CTGGGTGTACTAGTACTACTCCG
58.874
52.174
28.56
18.34
37.00
4.63
611
3567
5.109500
ACTGGGTGTACTAGTACTACTCC
57.891
47.826
28.56
23.62
37.00
3.85
612
3568
5.122519
GGACTGGGTGTACTAGTACTACTC
58.877
50.000
28.56
23.76
37.00
2.59
614
3570
4.080072
AGGGACTGGGTGTACTAGTACTAC
60.080
50.000
28.56
23.31
37.18
2.73
616
3572
2.924977
AGGGACTGGGTGTACTAGTACT
59.075
50.000
28.56
11.51
37.18
2.73
617
3573
3.378861
AGGGACTGGGTGTACTAGTAC
57.621
52.381
23.58
23.58
37.18
2.73
619
3575
4.408904
TTTAGGGACTGGGTGTACTAGT
57.591
45.455
0.00
0.00
41.52
2.57
620
3576
5.750352
TTTTTAGGGACTGGGTGTACTAG
57.250
43.478
0.00
0.00
41.52
2.57
648
3731
2.181021
GTGGACTGGGCGTACTCG
59.819
66.667
0.00
0.00
40.37
4.18
649
3732
1.215647
CAGTGGACTGGGCGTACTC
59.784
63.158
0.00
0.00
40.20
2.59
650
3733
2.943978
GCAGTGGACTGGGCGTACT
61.944
63.158
8.82
0.00
43.94
2.73
651
3734
2.434359
GCAGTGGACTGGGCGTAC
60.434
66.667
8.82
0.00
43.94
3.67
652
3735
3.702048
GGCAGTGGACTGGGCGTA
61.702
66.667
8.82
0.00
43.94
4.42
656
3739
4.351054
GGGTGGCAGTGGACTGGG
62.351
72.222
8.82
0.00
43.94
4.45
657
3740
4.704833
CGGGTGGCAGTGGACTGG
62.705
72.222
8.82
0.00
43.94
4.00
698
3781
2.201022
CCTACCGGGGGTGAGATCG
61.201
68.421
6.32
0.00
36.19
3.69
718
3821
1.981256
TTTTGCGCCTCTCTTTTCCT
58.019
45.000
4.18
0.00
0.00
3.36
938
4044
4.154347
CCAGACTGCCGGAGAGCC
62.154
72.222
5.05
0.00
0.00
4.70
1062
4207
1.376037
CACCGACTTCTTCCTGGGC
60.376
63.158
0.00
0.00
0.00
5.36
1236
4381
3.283684
TTGTCCTTGGCGGCGTTG
61.284
61.111
9.37
0.00
0.00
4.10
1297
4442
2.100603
GAGCTCCTCGTCGTTCCG
59.899
66.667
0.87
0.00
0.00
4.30
1374
8603
2.032528
TTCTTGGGGAGCAGCACG
59.967
61.111
0.00
0.00
0.00
5.34
1473
8702
2.507339
GAGCGCATCTCTCTTAAGCT
57.493
50.000
11.47
0.00
38.78
3.74
1490
8719
4.169508
CACACATCCTAAACGACAGAGAG
58.830
47.826
0.00
0.00
0.00
3.20
1494
8723
2.413112
CAGCACACATCCTAAACGACAG
59.587
50.000
0.00
0.00
0.00
3.51
1506
8735
2.135139
CGAACACTACACAGCACACAT
58.865
47.619
0.00
0.00
0.00
3.21
1532
8761
3.070446
ACGGAACACCTTCACATCACTAA
59.930
43.478
0.00
0.00
0.00
2.24
1536
8765
1.691976
AGACGGAACACCTTCACATCA
59.308
47.619
0.00
0.00
0.00
3.07
1538
8767
2.897969
ACTAGACGGAACACCTTCACAT
59.102
45.455
0.00
0.00
0.00
3.21
1539
8768
2.313317
ACTAGACGGAACACCTTCACA
58.687
47.619
0.00
0.00
0.00
3.58
1552
8783
4.174009
CAGGGTACATCAACAACTAGACG
58.826
47.826
0.00
0.00
0.00
4.18
1580
8811
7.014518
ACTGAATTTCTTCCATGAACATGAACA
59.985
33.333
15.21
0.00
41.20
3.18
1581
8812
7.373493
ACTGAATTTCTTCCATGAACATGAAC
58.627
34.615
15.21
0.00
41.20
3.18
1606
8837
8.443176
AGCATATTTGGGAATTCAGAGAGATTA
58.557
33.333
7.93
0.00
0.00
1.75
1614
8845
4.098960
ACAGCAGCATATTTGGGAATTCAG
59.901
41.667
7.93
0.00
0.00
3.02
1621
8853
2.928334
AGAGACAGCAGCATATTTGGG
58.072
47.619
0.00
0.00
0.00
4.12
1656
8888
3.265791
GCGTCAGTGATTCAAATCTCCT
58.734
45.455
0.00
0.00
36.39
3.69
1679
8911
2.203139
CACACGGGCAACAGGTGA
60.203
61.111
0.00
0.00
43.03
4.02
1680
8912
3.286751
CCACACGGGCAACAGGTG
61.287
66.667
0.00
0.00
45.06
4.00
1696
8928
2.147436
TTCGTTTGCCAATTTCAGCC
57.853
45.000
0.00
0.00
0.00
4.85
1720
8952
0.798776
CCGAACAACTGCCATCTGTC
59.201
55.000
0.00
0.00
0.00
3.51
1726
8958
1.073025
ATGAGCCGAACAACTGCCA
59.927
52.632
0.00
0.00
0.00
4.92
1769
9001
4.908601
TGCTTTCTCAAATACTCCTCCA
57.091
40.909
0.00
0.00
0.00
3.86
1773
9005
4.216257
TGCTGTTGCTTTCTCAAATACTCC
59.784
41.667
0.00
0.00
40.48
3.85
1774
9006
5.180117
TCTGCTGTTGCTTTCTCAAATACTC
59.820
40.000
0.00
0.00
40.48
2.59
1775
9007
5.065914
TCTGCTGTTGCTTTCTCAAATACT
58.934
37.500
0.00
0.00
40.48
2.12
1776
9008
5.362556
TCTGCTGTTGCTTTCTCAAATAC
57.637
39.130
0.00
0.00
40.48
1.89
1789
9023
1.512926
AGTTTACCGCTCTGCTGTTG
58.487
50.000
0.00
0.00
0.00
3.33
1791
9025
2.893637
CATAGTTTACCGCTCTGCTGT
58.106
47.619
0.00
0.00
0.00
4.40
1801
9035
5.110940
TCCGTTTTTGTGCATAGTTTACC
57.889
39.130
0.00
0.00
0.00
2.85
1867
9103
3.118408
TCCCTCCGACACAAATTCATAGG
60.118
47.826
0.00
0.00
0.00
2.57
1875
9111
2.940994
TCAATTCCCTCCGACACAAA
57.059
45.000
0.00
0.00
0.00
2.83
1882
9118
3.877508
GACAGGTTATTCAATTCCCTCCG
59.122
47.826
0.00
0.00
0.00
4.63
1908
9144
1.738099
ACAGCGAACGATGTCAGGC
60.738
57.895
12.15
0.00
41.16
4.85
1947
9183
1.468340
GCGTGAACCGTTTGTTGTGC
61.468
55.000
0.00
0.00
37.29
4.57
1987
9223
1.077429
GGAATCACAGGGTCCAGCC
60.077
63.158
0.00
0.00
0.00
4.85
2039
9275
2.359850
TGCACCCAGCCGATGAAC
60.360
61.111
0.00
0.00
44.83
3.18
2041
9277
4.100084
CCTGCACCCAGCCGATGA
62.100
66.667
0.00
0.00
44.83
2.92
2043
9279
4.415150
CACCTGCACCCAGCCGAT
62.415
66.667
0.00
0.00
44.83
4.18
2063
9331
1.622607
CCCGGTAGTGAAGGGCATGA
61.623
60.000
0.00
0.00
38.51
3.07
2084
9352
4.330074
CGTCGCTCCTGTTCAGAAATTAAT
59.670
41.667
1.00
0.00
0.00
1.40
2093
9361
1.215382
CATCCGTCGCTCCTGTTCA
59.785
57.895
0.00
0.00
0.00
3.18
2100
9368
2.725008
CCTCTCCATCCGTCGCTC
59.275
66.667
0.00
0.00
0.00
5.03
2103
9371
1.141881
CAACCCTCTCCATCCGTCG
59.858
63.158
0.00
0.00
0.00
5.12
2106
9374
0.978146
AGGACAACCCTCTCCATCCG
60.978
60.000
0.00
0.00
43.31
4.18
2109
9377
1.273838
TGCTAGGACAACCCTCTCCAT
60.274
52.381
0.00
0.00
43.31
3.41
2123
9391
8.723942
AATACTGTTTACAGAGATTTGCTAGG
57.276
34.615
16.31
0.00
46.59
3.02
2142
9410
0.099968
TCCGAACGGAGCGAATACTG
59.900
55.000
12.04
0.00
39.76
2.74
2149
9417
1.323534
CACTTATTTCCGAACGGAGCG
59.676
52.381
15.34
6.85
46.06
5.03
2185
9506
0.962356
AGCTGGGTCGAGCATTTTGG
60.962
55.000
17.59
0.68
41.83
3.28
2196
9517
3.023949
ATCAGGTCGCAGCTGGGTC
62.024
63.158
27.76
22.58
43.47
4.46
2247
9596
0.764271
TGGTGTGTTGCAGGAGATGA
59.236
50.000
0.00
0.00
0.00
2.92
2310
9659
0.520847
GCAAAGGCTGAGAAGCTGAC
59.479
55.000
0.00
0.00
36.96
3.51
2355
10000
1.201414
GACAATAACAAACGGGCTGGG
59.799
52.381
0.00
0.00
0.00
4.45
2386
10078
2.615747
GGGCTCCAAACTTACTCTGGTC
60.616
54.545
0.00
0.00
0.00
4.02
2387
10079
1.351350
GGGCTCCAAACTTACTCTGGT
59.649
52.381
0.00
0.00
0.00
4.00
2388
10080
1.630878
AGGGCTCCAAACTTACTCTGG
59.369
52.381
0.00
0.00
0.00
3.86
2389
10081
2.303022
TCAGGGCTCCAAACTTACTCTG
59.697
50.000
0.00
0.00
0.00
3.35
2390
10082
2.621070
TCAGGGCTCCAAACTTACTCT
58.379
47.619
0.00
0.00
0.00
3.24
2391
10083
3.274288
CATCAGGGCTCCAAACTTACTC
58.726
50.000
0.00
0.00
0.00
2.59
2392
10084
2.619074
GCATCAGGGCTCCAAACTTACT
60.619
50.000
0.00
0.00
0.00
2.24
2393
10085
1.745653
GCATCAGGGCTCCAAACTTAC
59.254
52.381
0.00
0.00
0.00
2.34
2394
10086
1.678728
CGCATCAGGGCTCCAAACTTA
60.679
52.381
0.00
0.00
0.00
2.24
2395
10087
0.962356
CGCATCAGGGCTCCAAACTT
60.962
55.000
0.00
0.00
0.00
2.66
2396
10088
1.377725
CGCATCAGGGCTCCAAACT
60.378
57.895
0.00
0.00
0.00
2.66
2397
10089
3.190878
CGCATCAGGGCTCCAAAC
58.809
61.111
0.00
0.00
0.00
2.93
2405
10097
2.442643
AATTGGGGCGCATCAGGG
60.443
61.111
10.83
0.00
0.00
4.45
2406
10098
2.788640
CCAATTGGGGCGCATCAGG
61.789
63.158
17.36
3.69
0.00
3.86
2407
10099
2.809706
CCAATTGGGGCGCATCAG
59.190
61.111
17.36
0.00
0.00
2.90
2408
10100
3.459965
GCCAATTGGGGCGCATCA
61.460
61.111
25.73
3.29
45.40
3.07
2415
10107
0.321346
GTTGTTCAGGCCAATTGGGG
59.679
55.000
25.73
1.60
37.04
4.96
2416
10108
1.047002
TGTTGTTCAGGCCAATTGGG
58.953
50.000
25.73
9.65
40.85
4.12
2417
10109
2.482864
GTTGTTGTTCAGGCCAATTGG
58.517
47.619
20.81
20.81
38.53
3.16
2418
10110
2.126467
CGTTGTTGTTCAGGCCAATTG
58.874
47.619
5.01
0.00
0.00
2.32
2419
10111
1.537990
GCGTTGTTGTTCAGGCCAATT
60.538
47.619
5.01
0.00
0.00
2.32
2420
10112
0.031994
GCGTTGTTGTTCAGGCCAAT
59.968
50.000
5.01
0.00
0.00
3.16
2421
10113
1.435515
GCGTTGTTGTTCAGGCCAA
59.564
52.632
5.01
0.00
0.00
4.52
2422
10114
2.485795
GGCGTTGTTGTTCAGGCCA
61.486
57.895
5.01
0.00
42.83
5.36
2423
10115
1.734388
AAGGCGTTGTTGTTCAGGCC
61.734
55.000
0.00
0.00
43.28
5.19
2424
10116
0.102300
AAAGGCGTTGTTGTTCAGGC
59.898
50.000
0.00
0.00
0.00
4.85
2425
10117
2.159310
TCAAAAGGCGTTGTTGTTCAGG
60.159
45.455
0.00
0.00
0.00
3.86
2426
10118
2.851824
GTCAAAAGGCGTTGTTGTTCAG
59.148
45.455
0.00
0.00
0.00
3.02
2427
10119
2.729467
CGTCAAAAGGCGTTGTTGTTCA
60.729
45.455
0.00
0.00
0.00
3.18
2428
10120
1.843753
CGTCAAAAGGCGTTGTTGTTC
59.156
47.619
0.00
0.00
0.00
3.18
2429
10121
1.468395
CCGTCAAAAGGCGTTGTTGTT
60.468
47.619
0.00
0.00
0.00
2.83
2430
10122
0.099791
CCGTCAAAAGGCGTTGTTGT
59.900
50.000
0.00
0.00
0.00
3.32
2431
10123
1.206115
GCCGTCAAAAGGCGTTGTTG
61.206
55.000
0.00
0.56
45.58
3.33
2432
10124
1.065109
GCCGTCAAAAGGCGTTGTT
59.935
52.632
0.00
0.00
45.58
2.83
2433
10125
2.719354
GCCGTCAAAAGGCGTTGT
59.281
55.556
0.00
0.00
45.58
3.32
2439
10131
1.202348
GGAATTGGAGCCGTCAAAAGG
59.798
52.381
0.00
0.00
0.00
3.11
2440
10132
2.095059
CAGGAATTGGAGCCGTCAAAAG
60.095
50.000
0.00
0.00
0.00
2.27
2441
10133
1.885887
CAGGAATTGGAGCCGTCAAAA
59.114
47.619
0.00
0.00
0.00
2.44
2442
10134
1.073125
TCAGGAATTGGAGCCGTCAAA
59.927
47.619
0.00
0.00
0.00
2.69
2443
10135
0.690192
TCAGGAATTGGAGCCGTCAA
59.310
50.000
0.00
0.00
0.00
3.18
2444
10136
0.250234
CTCAGGAATTGGAGCCGTCA
59.750
55.000
0.00
0.00
0.00
4.35
2445
10137
0.537188
TCTCAGGAATTGGAGCCGTC
59.463
55.000
0.00
0.00
0.00
4.79
2446
10138
0.539051
CTCTCAGGAATTGGAGCCGT
59.461
55.000
0.00
0.00
0.00
5.68
2447
10139
0.813210
GCTCTCAGGAATTGGAGCCG
60.813
60.000
0.00
0.00
40.90
5.52
2448
10140
0.254178
TGCTCTCAGGAATTGGAGCC
59.746
55.000
10.59
0.00
43.58
4.70
2449
10141
1.666054
CTGCTCTCAGGAATTGGAGC
58.334
55.000
6.82
6.82
44.05
4.70
2450
10142
1.666054
GCTGCTCTCAGGAATTGGAG
58.334
55.000
0.00
0.00
40.65
3.86
2451
10143
0.254178
GGCTGCTCTCAGGAATTGGA
59.746
55.000
0.00
0.00
40.65
3.53
2452
10144
0.750911
GGGCTGCTCTCAGGAATTGG
60.751
60.000
0.00
0.00
40.65
3.16
2453
10145
0.255318
AGGGCTGCTCTCAGGAATTG
59.745
55.000
0.00
0.00
40.65
2.32
2454
10146
0.255318
CAGGGCTGCTCTCAGGAATT
59.745
55.000
0.00
0.00
40.65
2.17
2455
10147
0.619832
TCAGGGCTGCTCTCAGGAAT
60.620
55.000
0.00
0.00
40.65
3.01
2456
10148
0.837691
TTCAGGGCTGCTCTCAGGAA
60.838
55.000
0.00
0.00
40.65
3.36
2457
10149
0.619832
ATTCAGGGCTGCTCTCAGGA
60.620
55.000
0.00
0.00
40.65
3.86
2458
10150
0.179051
GATTCAGGGCTGCTCTCAGG
60.179
60.000
0.00
0.00
40.65
3.86
2459
10151
0.179051
GGATTCAGGGCTGCTCTCAG
60.179
60.000
0.00
0.00
43.16
3.35
2460
10152
1.630126
GGGATTCAGGGCTGCTCTCA
61.630
60.000
0.00
0.00
0.00
3.27
2461
10153
1.148048
GGGATTCAGGGCTGCTCTC
59.852
63.158
0.00
0.00
0.00
3.20
2462
10154
3.329093
GGGATTCAGGGCTGCTCT
58.671
61.111
0.00
0.00
0.00
4.09
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.