Multiple sequence alignment - TraesCS5A01G245800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G245800 chr5A 100.000 3023 0 0 1 3023 459002933 458999911 0.000000e+00 5583.0
1 TraesCS5A01G245800 chr5A 95.804 143 6 0 2610 2752 376463290 376463432 6.520000e-57 231.0
2 TraesCS5A01G245800 chr5A 90.909 44 4 0 387 430 235003624 235003581 3.250000e-05 60.2
3 TraesCS5A01G245800 chr5D 92.020 2030 58 33 636 2607 358223929 358221946 0.000000e+00 2756.0
4 TraesCS5A01G245800 chr5D 90.364 550 44 7 1 545 358235436 358234891 0.000000e+00 713.0
5 TraesCS5A01G245800 chr5D 96.639 119 4 0 2634 2752 311635605 311635487 6.610000e-47 198.0
6 TraesCS5A01G245800 chr5B 92.494 1985 54 23 698 2607 423363605 423361641 0.000000e+00 2752.0
7 TraesCS5A01G245800 chr5B 85.934 519 45 10 43 556 423365360 423364865 2.060000e-146 529.0
8 TraesCS5A01G245800 chr5B 89.873 79 7 1 2813 2890 700471482 700471560 1.920000e-17 100.0
9 TraesCS5A01G245800 chr5B 82.955 88 13 2 2666 2752 474968134 474968220 8.990000e-11 78.7
10 TraesCS5A01G245800 chr2B 95.833 144 6 0 2609 2752 683173088 683173231 1.810000e-57 233.0
11 TraesCS5A01G245800 chrUn 93.056 144 10 0 2609 2752 3863085 3862942 8.490000e-51 211.0
12 TraesCS5A01G245800 chrUn 82.955 88 13 2 2666 2752 279043794 279043880 8.990000e-11 78.7
13 TraesCS5A01G245800 chr1B 93.056 144 10 0 2609 2752 85266180 85266037 8.490000e-51 211.0
14 TraesCS5A01G245800 chr4A 87.413 143 11 2 2610 2752 709200434 709200569 1.120000e-34 158.0
15 TraesCS5A01G245800 chr3D 76.868 281 41 16 44 307 39032183 39031910 1.460000e-28 137.0
16 TraesCS5A01G245800 chr7B 91.250 80 6 1 2813 2891 237502485 237502564 1.150000e-19 108.0
17 TraesCS5A01G245800 chr6B 91.139 79 5 2 2813 2890 22232666 22232589 4.120000e-19 106.0
18 TraesCS5A01G245800 chr6B 73.478 230 50 9 1275 1501 704890693 704890914 3.230000e-10 76.8
19 TraesCS5A01G245800 chr7A 88.095 84 7 3 2810 2891 280020904 280020986 2.480000e-16 97.1
20 TraesCS5A01G245800 chr6D 73.355 304 57 15 1275 1575 462422998 462423280 1.150000e-14 91.6
21 TraesCS5A01G245800 chr3A 82.955 88 13 2 2666 2752 562795584 562795670 8.990000e-11 78.7
22 TraesCS5A01G245800 chr2A 100.000 29 0 0 1121 1149 7526509 7526537 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G245800 chr5A 458999911 459002933 3022 True 5583.0 5583 100.000 1 3023 1 chr5A.!!$R2 3022
1 TraesCS5A01G245800 chr5D 358221946 358223929 1983 True 2756.0 2756 92.020 636 2607 1 chr5D.!!$R2 1971
2 TraesCS5A01G245800 chr5D 358234891 358235436 545 True 713.0 713 90.364 1 545 1 chr5D.!!$R3 544
3 TraesCS5A01G245800 chr5B 423361641 423365360 3719 True 1640.5 2752 89.214 43 2607 2 chr5B.!!$R1 2564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 691 0.031716 TCTCAGGCTAGGCAGTGGAT 60.032 55.0 19.7 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 3562 0.549169 AGTTGGTTGGGGGCTAGCTA 60.549 55.0 15.72 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.904378 TCGTCGTCCATGGTGTCCA 60.904 57.895 12.58 0.00 38.19 4.02
122 125 0.383590 CGCCACAACAACCATTGACA 59.616 50.000 0.00 0.00 33.57 3.58
143 146 8.040002 TGACAGTTAATATGGGTATGGATGAA 57.960 34.615 0.00 0.00 0.00 2.57
162 165 5.241403 TGAAATGTGGAAGTACTCATGGT 57.759 39.130 0.00 0.00 0.00 3.55
182 185 4.472470 TGGTCAGATGATCCAAGACAAGAT 59.528 41.667 10.88 0.00 0.00 2.40
322 325 2.589540 CATTGCCCGACCTGCCTA 59.410 61.111 0.00 0.00 0.00 3.93
334 337 1.145819 CTGCCTAGCCTCTCTTGCC 59.854 63.158 0.00 0.00 0.00 4.52
335 338 1.306482 TGCCTAGCCTCTCTTGCCT 60.306 57.895 0.00 0.00 0.00 4.75
477 483 4.934356 ACCCTGGCTTCTGAATCAAATTA 58.066 39.130 0.00 0.00 0.00 1.40
479 485 5.361857 ACCCTGGCTTCTGAATCAAATTATG 59.638 40.000 0.00 0.00 0.00 1.90
492 498 9.859152 TGAATCAAATTATGTATACCACCATGA 57.141 29.630 0.00 0.00 0.00 3.07
499 505 9.561069 AATTATGTATACCACCATGAAGAAGAC 57.439 33.333 0.00 0.00 0.00 3.01
504 510 6.814954 ATACCACCATGAAGAAGACATACT 57.185 37.500 0.00 0.00 0.00 2.12
505 511 5.091261 ACCACCATGAAGAAGACATACTC 57.909 43.478 0.00 0.00 0.00 2.59
556 562 4.137116 AGCTACAAAATCGCACCTGATA 57.863 40.909 0.00 0.00 0.00 2.15
558 564 5.126067 AGCTACAAAATCGCACCTGATATT 58.874 37.500 0.00 0.00 0.00 1.28
559 565 5.590259 AGCTACAAAATCGCACCTGATATTT 59.410 36.000 0.00 0.00 0.00 1.40
560 566 6.095440 AGCTACAAAATCGCACCTGATATTTT 59.905 34.615 0.00 0.00 33.07 1.82
575 641 8.519526 ACCTGATATTTTTACTGCGAATTCAAA 58.480 29.630 6.22 0.00 0.00 2.69
583 649 7.795431 TTTACTGCGAATTCAAATTGTGATC 57.205 32.000 6.22 0.00 35.70 2.92
584 650 5.375417 ACTGCGAATTCAAATTGTGATCA 57.625 34.783 6.22 0.00 35.70 2.92
588 654 6.031471 TGCGAATTCAAATTGTGATCATCTG 58.969 36.000 6.22 0.00 35.70 2.90
589 655 5.457799 GCGAATTCAAATTGTGATCATCTGG 59.542 40.000 6.22 0.00 35.70 3.86
591 657 6.183360 CGAATTCAAATTGTGATCATCTGGGA 60.183 38.462 6.22 0.00 35.70 4.37
593 659 6.704289 TTCAAATTGTGATCATCTGGGATC 57.296 37.500 0.00 0.00 43.19 3.36
595 661 7.140522 TCAAATTGTGATCATCTGGGATCTA 57.859 36.000 0.00 0.00 43.27 1.98
609 676 2.315176 GGATCTAGCCTTGCTCTCTCA 58.685 52.381 0.00 0.00 40.44 3.27
624 691 0.031716 TCTCAGGCTAGGCAGTGGAT 60.032 55.000 19.70 0.00 0.00 3.41
628 695 2.280457 GCTAGGCAGTGGATCGGC 60.280 66.667 0.00 0.00 36.55 5.54
681 968 7.512402 TGGAAAAGACAAAAGGATAAAAGGGAT 59.488 33.333 0.00 0.00 0.00 3.85
697 1830 1.843832 GATACCCTCCCAGAGCCCC 60.844 68.421 0.00 0.00 0.00 5.80
698 1831 2.621672 GATACCCTCCCAGAGCCCCA 62.622 65.000 0.00 0.00 0.00 4.96
699 1832 2.628187 ATACCCTCCCAGAGCCCCAG 62.628 65.000 0.00 0.00 0.00 4.45
700 1833 4.421554 CCCTCCCAGAGCCCCAGA 62.422 72.222 0.00 0.00 0.00 3.86
701 1834 2.767496 CCTCCCAGAGCCCCAGAG 60.767 72.222 0.00 0.00 0.00 3.35
702 1835 3.478274 CTCCCAGAGCCCCAGAGC 61.478 72.222 0.00 0.00 0.00 4.09
866 2024 4.671569 CCGCTAGCTCCATCCCGC 62.672 72.222 13.93 0.00 0.00 6.13
872 2030 2.889521 TAGCTCCATCCCGCTCCCAA 62.890 60.000 0.00 0.00 37.68 4.12
884 2047 0.687354 GCTCCCAACTCCAGAGAACA 59.313 55.000 0.70 0.00 0.00 3.18
897 2060 0.601558 GAGAACACCCACGACTAGCA 59.398 55.000 0.00 0.00 0.00 3.49
909 2092 1.009829 GACTAGCATCGCCCAACTTG 58.990 55.000 0.00 0.00 0.00 3.16
920 2103 1.227823 CCAACTTGCTCGTGACCCA 60.228 57.895 0.00 0.00 0.00 4.51
927 2110 1.078848 GCTCGTGACCCATTGCTCT 60.079 57.895 0.00 0.00 0.00 4.09
931 2114 0.534412 CGTGACCCATTGCTCTCTCT 59.466 55.000 0.00 0.00 0.00 3.10
982 2165 1.638467 GCTCATCATTCGCGACCAC 59.362 57.895 9.15 0.00 0.00 4.16
994 2177 1.006102 CGACCACGTGAGCTTCCTT 60.006 57.895 19.30 0.00 34.56 3.36
1008 2191 3.013219 GCTTCCTTTCTCCATGTCCTTC 58.987 50.000 0.00 0.00 0.00 3.46
1191 2374 2.110006 GCCGAGATGAAGGAGCCC 59.890 66.667 0.00 0.00 0.00 5.19
1793 2976 2.202362 CGTCTCCGTGTCGCTCTG 60.202 66.667 0.00 0.00 0.00 3.35
1941 3124 4.514577 CCCGTCTACGCCTGCCAG 62.515 72.222 0.00 0.00 38.18 4.85
2099 3286 4.454678 TGGCTAGATCTGCATTAACCTTG 58.545 43.478 5.18 0.00 0.00 3.61
2120 3309 1.816835 GCTGCACCTTAGGGTTTAACC 59.183 52.381 5.40 5.40 44.73 2.85
2178 3367 1.219522 GATCCGCATTTCGTACGGGG 61.220 60.000 16.52 7.36 46.87 5.73
2202 3391 6.015940 GGAACTGAGAATTGAATGTCAACCTT 60.016 38.462 0.00 0.00 39.45 3.50
2230 3419 2.202260 CAAGCTGCATGCACGTCG 60.202 61.111 18.46 8.43 45.94 5.12
2318 3512 6.271488 TGCCAGTATTTAGTTGTACTACGT 57.729 37.500 1.74 0.00 28.93 3.57
2319 3513 6.690530 TGCCAGTATTTAGTTGTACTACGTT 58.309 36.000 0.00 0.00 28.93 3.99
2320 3514 7.153985 TGCCAGTATTTAGTTGTACTACGTTT 58.846 34.615 0.00 0.00 28.93 3.60
2321 3515 7.116662 TGCCAGTATTTAGTTGTACTACGTTTG 59.883 37.037 0.00 0.00 28.93 2.93
2322 3516 7.116805 GCCAGTATTTAGTTGTACTACGTTTGT 59.883 37.037 0.00 0.00 28.93 2.83
2362 3559 3.786635 AGCGCCAAGATTAGTTCTACTG 58.213 45.455 2.29 0.00 33.05 2.74
2363 3560 2.866762 GCGCCAAGATTAGTTCTACTGG 59.133 50.000 0.00 0.00 36.00 4.00
2372 3569 5.475564 AGATTAGTTCTACTGGCTAGCTAGC 59.524 44.000 33.40 33.40 39.79 3.42
2382 3579 1.921869 GCTAGCTAGCCCCCAACCAA 61.922 60.000 31.67 0.00 43.39 3.67
2419 3645 4.314961 TGTACTTGCACTTGTACCATCTG 58.685 43.478 16.35 0.00 38.48 2.90
2456 3682 3.817647 AGCCTAAATACTACTCCGTACCG 59.182 47.826 0.00 0.00 0.00 4.02
2457 3683 3.565902 GCCTAAATACTACTCCGTACCGT 59.434 47.826 0.00 0.00 0.00 4.83
2529 3757 3.490060 AAAAGCATAATGGGGGAGGTT 57.510 42.857 0.00 0.00 0.00 3.50
2563 3791 1.749258 GTGCCCATTCCCTTCCGTC 60.749 63.158 0.00 0.00 0.00 4.79
2583 3811 2.228582 TCGAGCCATTGATTTGTGGTTG 59.771 45.455 0.00 0.00 37.81 3.77
2598 3826 0.538118 GGTTGTCTACCGTATGGGCA 59.462 55.000 5.82 0.00 40.62 5.36
2626 3854 4.758773 CCAAAGGGCATAATTGGATTGT 57.241 40.909 0.00 0.00 45.14 2.71
2627 3855 4.696455 CCAAAGGGCATAATTGGATTGTC 58.304 43.478 0.00 0.00 45.14 3.18
2628 3856 4.362279 CAAAGGGCATAATTGGATTGTCG 58.638 43.478 0.00 0.00 0.00 4.35
2629 3857 3.297134 AGGGCATAATTGGATTGTCGT 57.703 42.857 0.00 0.00 0.00 4.34
2630 3858 3.631250 AGGGCATAATTGGATTGTCGTT 58.369 40.909 0.00 0.00 0.00 3.85
2631 3859 4.023291 AGGGCATAATTGGATTGTCGTTT 58.977 39.130 0.00 0.00 0.00 3.60
2632 3860 4.097892 AGGGCATAATTGGATTGTCGTTTC 59.902 41.667 0.00 0.00 0.00 2.78
2633 3861 4.359706 GGCATAATTGGATTGTCGTTTCC 58.640 43.478 0.00 0.00 0.00 3.13
2634 3862 4.142271 GGCATAATTGGATTGTCGTTTCCA 60.142 41.667 0.00 0.00 40.24 3.53
2635 3863 4.798387 GCATAATTGGATTGTCGTTTCCAC 59.202 41.667 0.00 0.00 41.65 4.02
2636 3864 5.393027 GCATAATTGGATTGTCGTTTCCACT 60.393 40.000 0.00 0.00 41.65 4.00
2637 3865 4.766404 AATTGGATTGTCGTTTCCACTC 57.234 40.909 0.00 0.00 41.65 3.51
2638 3866 2.920724 TGGATTGTCGTTTCCACTCA 57.079 45.000 0.00 0.00 37.10 3.41
2639 3867 3.201353 TGGATTGTCGTTTCCACTCAA 57.799 42.857 0.00 0.00 37.10 3.02
2640 3868 3.546724 TGGATTGTCGTTTCCACTCAAA 58.453 40.909 0.00 0.00 37.10 2.69
2641 3869 4.141287 TGGATTGTCGTTTCCACTCAAAT 58.859 39.130 0.00 0.00 37.10 2.32
2642 3870 5.309638 TGGATTGTCGTTTCCACTCAAATA 58.690 37.500 0.00 0.00 37.10 1.40
2643 3871 5.180492 TGGATTGTCGTTTCCACTCAAATAC 59.820 40.000 0.00 0.00 37.10 1.89
2644 3872 5.391629 GGATTGTCGTTTCCACTCAAATACC 60.392 44.000 0.00 0.00 31.99 2.73
2647 3875 4.070009 GTCGTTTCCACTCAAATACCCTT 58.930 43.478 0.00 0.00 0.00 3.95
2656 3884 7.466804 TCCACTCAAATACCCTTGTAGAAAAT 58.533 34.615 0.00 0.00 0.00 1.82
2657 3885 8.607713 TCCACTCAAATACCCTTGTAGAAAATA 58.392 33.333 0.00 0.00 0.00 1.40
2658 3886 9.408648 CCACTCAAATACCCTTGTAGAAAATAT 57.591 33.333 0.00 0.00 0.00 1.28
2662 3890 9.550406 TCAAATACCCTTGTAGAAAATATACGG 57.450 33.333 0.00 0.00 0.00 4.02
2663 3891 9.550406 CAAATACCCTTGTAGAAAATATACGGA 57.450 33.333 0.00 0.00 0.00 4.69
2664 3892 9.551734 AAATACCCTTGTAGAAAATATACGGAC 57.448 33.333 0.00 0.00 0.00 4.79
2665 3893 5.922053 ACCCTTGTAGAAAATATACGGACC 58.078 41.667 0.00 0.00 0.00 4.46
2666 3894 5.664457 ACCCTTGTAGAAAATATACGGACCT 59.336 40.000 0.00 0.00 0.00 3.85
2667 3895 6.183360 ACCCTTGTAGAAAATATACGGACCTC 60.183 42.308 0.00 0.00 0.00 3.85
2668 3896 6.221659 CCTTGTAGAAAATATACGGACCTCC 58.778 44.000 0.00 0.00 0.00 4.30
2679 3907 4.368543 GACCTCCGTCGGCCGTTT 62.369 66.667 27.15 2.12 33.66 3.60
2680 3908 4.368543 ACCTCCGTCGGCCGTTTC 62.369 66.667 27.15 15.58 33.66 2.78
2681 3909 4.367023 CCTCCGTCGGCCGTTTCA 62.367 66.667 27.15 1.49 33.66 2.69
2682 3910 2.125673 CTCCGTCGGCCGTTTCAT 60.126 61.111 27.15 0.00 33.66 2.57
2683 3911 1.740296 CTCCGTCGGCCGTTTCATT 60.740 57.895 27.15 0.00 33.66 2.57
2684 3912 1.296056 CTCCGTCGGCCGTTTCATTT 61.296 55.000 27.15 0.00 33.66 2.32
2685 3913 1.133869 CCGTCGGCCGTTTCATTTC 59.866 57.895 27.15 5.76 33.66 2.17
2686 3914 1.133869 CGTCGGCCGTTTCATTTCC 59.866 57.895 27.15 2.07 0.00 3.13
2687 3915 1.570347 CGTCGGCCGTTTCATTTCCA 61.570 55.000 27.15 0.00 0.00 3.53
2688 3916 0.168128 GTCGGCCGTTTCATTTCCAG 59.832 55.000 27.15 0.00 0.00 3.86
2689 3917 1.154035 CGGCCGTTTCATTTCCAGC 60.154 57.895 19.50 0.00 0.00 4.85
2690 3918 1.215382 GGCCGTTTCATTTCCAGCC 59.785 57.895 0.00 0.00 0.00 4.85
2691 3919 1.154035 GCCGTTTCATTTCCAGCCG 60.154 57.895 0.00 0.00 0.00 5.52
2692 3920 1.582610 GCCGTTTCATTTCCAGCCGA 61.583 55.000 0.00 0.00 0.00 5.54
2693 3921 0.878416 CCGTTTCATTTCCAGCCGAA 59.122 50.000 0.00 0.00 0.00 4.30
2694 3922 1.268352 CCGTTTCATTTCCAGCCGAAA 59.732 47.619 0.00 0.00 44.49 3.46
2695 3923 2.315901 CGTTTCATTTCCAGCCGAAAC 58.684 47.619 0.00 0.00 43.21 2.78
2696 3924 2.031157 CGTTTCATTTCCAGCCGAAACT 60.031 45.455 10.93 0.00 43.21 2.66
2697 3925 3.565516 GTTTCATTTCCAGCCGAAACTC 58.434 45.455 0.00 0.00 43.21 3.01
2698 3926 1.821216 TCATTTCCAGCCGAAACTCC 58.179 50.000 0.00 0.00 43.21 3.85
2699 3927 1.351017 TCATTTCCAGCCGAAACTCCT 59.649 47.619 0.00 0.00 43.21 3.69
2700 3928 2.162681 CATTTCCAGCCGAAACTCCTT 58.837 47.619 0.00 0.00 43.21 3.36
2701 3929 1.892209 TTTCCAGCCGAAACTCCTTC 58.108 50.000 0.00 0.00 35.49 3.46
2710 3938 0.519077 GAAACTCCTTCGCAGCTTGG 59.481 55.000 0.00 0.00 0.00 3.61
2711 3939 0.179018 AAACTCCTTCGCAGCTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
2712 3940 0.685097 AACTCCTTCGCAGCTTGGTA 59.315 50.000 0.00 0.00 0.00 3.25
2713 3941 0.685097 ACTCCTTCGCAGCTTGGTAA 59.315 50.000 0.00 0.00 0.00 2.85
2714 3942 1.071699 ACTCCTTCGCAGCTTGGTAAA 59.928 47.619 0.00 0.00 0.00 2.01
2715 3943 2.290323 ACTCCTTCGCAGCTTGGTAAAT 60.290 45.455 0.00 0.00 0.00 1.40
2716 3944 2.749621 CTCCTTCGCAGCTTGGTAAATT 59.250 45.455 0.00 0.00 0.00 1.82
2717 3945 3.938963 CTCCTTCGCAGCTTGGTAAATTA 59.061 43.478 0.00 0.00 0.00 1.40
2718 3946 3.687698 TCCTTCGCAGCTTGGTAAATTAC 59.312 43.478 0.00 0.00 0.00 1.89
2719 3947 3.438781 CCTTCGCAGCTTGGTAAATTACA 59.561 43.478 5.45 0.00 0.00 2.41
2720 3948 4.403453 CTTCGCAGCTTGGTAAATTACAC 58.597 43.478 5.45 0.00 0.00 2.90
2721 3949 3.403968 TCGCAGCTTGGTAAATTACACA 58.596 40.909 5.45 0.00 0.00 3.72
2722 3950 4.006989 TCGCAGCTTGGTAAATTACACAT 58.993 39.130 5.45 0.00 0.00 3.21
2723 3951 4.097714 CGCAGCTTGGTAAATTACACATG 58.902 43.478 5.45 0.00 0.00 3.21
2724 3952 4.379394 CGCAGCTTGGTAAATTACACATGT 60.379 41.667 5.45 0.00 0.00 3.21
2725 3953 5.163804 CGCAGCTTGGTAAATTACACATGTA 60.164 40.000 0.00 0.00 0.00 2.29
2726 3954 6.616947 GCAGCTTGGTAAATTACACATGTAA 58.383 36.000 6.92 6.92 43.71 2.41
2727 3955 7.087639 GCAGCTTGGTAAATTACACATGTAAA 58.912 34.615 8.47 0.00 42.93 2.01
2728 3956 7.759433 GCAGCTTGGTAAATTACACATGTAAAT 59.241 33.333 8.47 0.00 42.93 1.40
2729 3957 9.638239 CAGCTTGGTAAATTACACATGTAAATT 57.362 29.630 8.47 9.00 42.93 1.82
2741 3969 7.690952 ACACATGTAAATTAAATACCGGTGT 57.309 32.000 19.93 8.05 36.01 4.16
2742 3970 8.789825 ACACATGTAAATTAAATACCGGTGTA 57.210 30.769 19.93 3.64 37.56 2.90
2743 3971 9.398538 ACACATGTAAATTAAATACCGGTGTAT 57.601 29.630 19.93 0.00 37.56 2.29
2759 3987 8.989653 ACCGGTGTATTTAAATACCAAAAATG 57.010 30.769 27.56 15.56 40.37 2.32
2760 3988 7.546316 ACCGGTGTATTTAAATACCAAAAATGC 59.454 33.333 27.56 12.21 40.37 3.56
2761 3989 7.762159 CCGGTGTATTTAAATACCAAAAATGCT 59.238 33.333 27.56 0.00 40.37 3.79
2762 3990 9.790389 CGGTGTATTTAAATACCAAAAATGCTA 57.210 29.630 27.56 9.00 40.37 3.49
2765 3993 9.810545 TGTATTTAAATACCAAAAATGCTAGGC 57.189 29.630 27.56 5.48 40.37 3.93
2766 3994 9.256477 GTATTTAAATACCAAAAATGCTAGGCC 57.744 33.333 22.60 0.00 36.18 5.19
2767 3995 7.489239 TTTAAATACCAAAAATGCTAGGCCT 57.511 32.000 11.78 11.78 0.00 5.19
2768 3996 8.596781 TTTAAATACCAAAAATGCTAGGCCTA 57.403 30.769 13.09 13.09 0.00 3.93
2769 3997 6.465439 AAATACCAAAAATGCTAGGCCTAC 57.535 37.500 8.91 6.89 0.00 3.18
2770 3998 2.365582 ACCAAAAATGCTAGGCCTACG 58.634 47.619 8.91 6.62 0.00 3.51
2771 3999 2.290705 ACCAAAAATGCTAGGCCTACGT 60.291 45.455 8.91 4.83 0.00 3.57
2772 4000 3.054948 ACCAAAAATGCTAGGCCTACGTA 60.055 43.478 8.91 5.44 0.00 3.57
2773 4001 3.942748 CCAAAAATGCTAGGCCTACGTAA 59.057 43.478 8.91 0.00 0.00 3.18
2788 4016 5.045872 CCTACGTAAGGTTGCTATGTAACC 58.954 45.833 9.07 9.07 46.18 2.85
2799 4027 8.515695 GGTTGCTATGTAACCTACCTAAATTT 57.484 34.615 9.70 0.00 43.30 1.82
2800 4028 8.963725 GGTTGCTATGTAACCTACCTAAATTTT 58.036 33.333 9.70 0.00 43.30 1.82
2801 4029 9.999009 GTTGCTATGTAACCTACCTAAATTTTC 57.001 33.333 0.00 0.00 0.00 2.29
2802 4030 9.969001 TTGCTATGTAACCTACCTAAATTTTCT 57.031 29.630 0.00 0.00 0.00 2.52
2803 4031 9.969001 TGCTATGTAACCTACCTAAATTTTCTT 57.031 29.630 0.00 0.00 0.00 2.52
2808 4036 9.643735 TGTAACCTACCTAAATTTTCTTTTCCA 57.356 29.630 0.00 0.00 0.00 3.53
2809 4037 9.903682 GTAACCTACCTAAATTTTCTTTTCCAC 57.096 33.333 0.00 0.00 0.00 4.02
2810 4038 7.534723 ACCTACCTAAATTTTCTTTTCCACC 57.465 36.000 0.00 0.00 0.00 4.61
2811 4039 7.070629 ACCTACCTAAATTTTCTTTTCCACCA 58.929 34.615 0.00 0.00 0.00 4.17
2812 4040 7.565768 ACCTACCTAAATTTTCTTTTCCACCAA 59.434 33.333 0.00 0.00 0.00 3.67
2813 4041 7.870954 CCTACCTAAATTTTCTTTTCCACCAAC 59.129 37.037 0.00 0.00 0.00 3.77
2814 4042 7.432148 ACCTAAATTTTCTTTTCCACCAACT 57.568 32.000 0.00 0.00 0.00 3.16
2815 4043 8.541899 ACCTAAATTTTCTTTTCCACCAACTA 57.458 30.769 0.00 0.00 0.00 2.24
2816 4044 8.983789 ACCTAAATTTTCTTTTCCACCAACTAA 58.016 29.630 0.00 0.00 0.00 2.24
2817 4045 9.825109 CCTAAATTTTCTTTTCCACCAACTAAA 57.175 29.630 0.00 0.00 0.00 1.85
2819 4047 7.786178 AATTTTCTTTTCCACCAACTAAAGC 57.214 32.000 0.00 0.00 0.00 3.51
2820 4048 4.929819 TTCTTTTCCACCAACTAAAGCC 57.070 40.909 0.00 0.00 0.00 4.35
2821 4049 3.227614 TCTTTTCCACCAACTAAAGCCC 58.772 45.455 0.00 0.00 0.00 5.19
2822 4050 2.757894 TTTCCACCAACTAAAGCCCA 57.242 45.000 0.00 0.00 0.00 5.36
2823 4051 2.757894 TTCCACCAACTAAAGCCCAA 57.242 45.000 0.00 0.00 0.00 4.12
2824 4052 2.990740 TCCACCAACTAAAGCCCAAT 57.009 45.000 0.00 0.00 0.00 3.16
2825 4053 3.252554 TCCACCAACTAAAGCCCAATT 57.747 42.857 0.00 0.00 0.00 2.32
2826 4054 4.390129 TCCACCAACTAAAGCCCAATTA 57.610 40.909 0.00 0.00 0.00 1.40
2827 4055 4.742012 TCCACCAACTAAAGCCCAATTAA 58.258 39.130 0.00 0.00 0.00 1.40
2828 4056 5.148502 TCCACCAACTAAAGCCCAATTAAA 58.851 37.500 0.00 0.00 0.00 1.52
2829 4057 5.245075 TCCACCAACTAAAGCCCAATTAAAG 59.755 40.000 0.00 0.00 0.00 1.85
2830 4058 5.245075 CCACCAACTAAAGCCCAATTAAAGA 59.755 40.000 0.00 0.00 0.00 2.52
2831 4059 6.156519 CACCAACTAAAGCCCAATTAAAGAC 58.843 40.000 0.00 0.00 0.00 3.01
2832 4060 6.015434 CACCAACTAAAGCCCAATTAAAGACT 60.015 38.462 0.00 0.00 0.00 3.24
2833 4061 6.015434 ACCAACTAAAGCCCAATTAAAGACTG 60.015 38.462 0.00 0.00 0.00 3.51
2834 4062 5.644977 ACTAAAGCCCAATTAAAGACTGC 57.355 39.130 0.00 0.00 0.00 4.40
2835 4063 3.961480 AAAGCCCAATTAAAGACTGCC 57.039 42.857 0.00 0.00 0.00 4.85
2836 4064 2.603075 AGCCCAATTAAAGACTGCCA 57.397 45.000 0.00 0.00 0.00 4.92
2837 4065 2.888212 AGCCCAATTAAAGACTGCCAA 58.112 42.857 0.00 0.00 0.00 4.52
2838 4066 3.238597 AGCCCAATTAAAGACTGCCAAA 58.761 40.909 0.00 0.00 0.00 3.28
2839 4067 3.840078 AGCCCAATTAAAGACTGCCAAAT 59.160 39.130 0.00 0.00 0.00 2.32
2840 4068 4.081476 AGCCCAATTAAAGACTGCCAAATC 60.081 41.667 0.00 0.00 0.00 2.17
2841 4069 4.322650 GCCCAATTAAAGACTGCCAAATCA 60.323 41.667 0.00 0.00 0.00 2.57
2842 4070 5.627503 GCCCAATTAAAGACTGCCAAATCAT 60.628 40.000 0.00 0.00 0.00 2.45
2843 4071 6.044682 CCCAATTAAAGACTGCCAAATCATC 58.955 40.000 0.00 0.00 0.00 2.92
2844 4072 6.044682 CCAATTAAAGACTGCCAAATCATCC 58.955 40.000 0.00 0.00 0.00 3.51
2845 4073 6.127253 CCAATTAAAGACTGCCAAATCATCCT 60.127 38.462 0.00 0.00 0.00 3.24
2846 4074 7.068593 CCAATTAAAGACTGCCAAATCATCCTA 59.931 37.037 0.00 0.00 0.00 2.94
2847 4075 7.573968 ATTAAAGACTGCCAAATCATCCTAC 57.426 36.000 0.00 0.00 0.00 3.18
2848 4076 4.574674 AAGACTGCCAAATCATCCTACA 57.425 40.909 0.00 0.00 0.00 2.74
2849 4077 3.878778 AGACTGCCAAATCATCCTACAC 58.121 45.455 0.00 0.00 0.00 2.90
2850 4078 2.609459 GACTGCCAAATCATCCTACACG 59.391 50.000 0.00 0.00 0.00 4.49
2851 4079 2.236146 ACTGCCAAATCATCCTACACGA 59.764 45.455 0.00 0.00 0.00 4.35
2852 4080 3.270027 CTGCCAAATCATCCTACACGAA 58.730 45.455 0.00 0.00 0.00 3.85
2853 4081 3.270027 TGCCAAATCATCCTACACGAAG 58.730 45.455 0.00 0.00 0.00 3.79
2854 4082 2.614057 GCCAAATCATCCTACACGAAGG 59.386 50.000 0.00 0.00 38.06 3.46
2855 4083 3.873910 CCAAATCATCCTACACGAAGGT 58.126 45.455 0.00 0.00 37.91 3.50
2856 4084 4.682320 GCCAAATCATCCTACACGAAGGTA 60.682 45.833 0.00 0.00 37.91 3.08
2857 4085 4.809426 CCAAATCATCCTACACGAAGGTAC 59.191 45.833 0.00 0.00 37.91 3.34
2858 4086 3.984508 ATCATCCTACACGAAGGTACG 57.015 47.619 0.00 0.00 37.91 3.67
2860 4088 3.872696 TCATCCTACACGAAGGTACGTA 58.127 45.455 0.00 0.00 44.76 3.57
2861 4089 3.873361 TCATCCTACACGAAGGTACGTAG 59.127 47.826 0.00 0.00 44.76 3.51
2865 4093 2.997485 ACACGAAGGTACGTAGGAAC 57.003 50.000 0.00 0.00 44.76 3.62
2866 4094 1.541588 ACACGAAGGTACGTAGGAACC 59.458 52.381 0.00 0.00 44.76 3.62
2872 4100 3.582714 AGGTACGTAGGAACCTTTTCG 57.417 47.619 1.73 5.20 43.99 3.46
2873 4101 2.893489 AGGTACGTAGGAACCTTTTCGT 59.107 45.455 1.73 16.67 43.99 3.85
2874 4102 4.079253 AGGTACGTAGGAACCTTTTCGTA 58.921 43.478 1.73 15.33 43.99 3.43
2875 4103 4.156739 AGGTACGTAGGAACCTTTTCGTAG 59.843 45.833 17.75 0.00 43.99 3.51
2876 4104 4.156008 GGTACGTAGGAACCTTTTCGTAGA 59.844 45.833 17.75 5.67 33.73 2.59
2877 4105 5.163612 GGTACGTAGGAACCTTTTCGTAGAT 60.164 44.000 17.75 4.02 33.73 1.98
2878 4106 4.741342 ACGTAGGAACCTTTTCGTAGATG 58.259 43.478 13.15 0.00 33.73 2.90
2879 4107 4.219288 ACGTAGGAACCTTTTCGTAGATGT 59.781 41.667 13.15 0.00 33.73 3.06
2880 4108 5.415701 ACGTAGGAACCTTTTCGTAGATGTA 59.584 40.000 13.15 0.00 33.73 2.29
2881 4109 5.970023 CGTAGGAACCTTTTCGTAGATGTAG 59.030 44.000 0.00 0.00 33.73 2.74
2882 4110 4.756502 AGGAACCTTTTCGTAGATGTAGC 58.243 43.478 0.00 0.00 35.04 3.58
2883 4111 4.222145 AGGAACCTTTTCGTAGATGTAGCA 59.778 41.667 0.00 0.00 35.04 3.49
2884 4112 5.104900 AGGAACCTTTTCGTAGATGTAGCAT 60.105 40.000 0.00 0.00 35.04 3.79
2885 4113 5.585047 GGAACCTTTTCGTAGATGTAGCATT 59.415 40.000 0.00 0.00 35.04 3.56
2886 4114 6.422776 AACCTTTTCGTAGATGTAGCATTG 57.577 37.500 0.00 0.00 35.04 2.82
2887 4115 4.332819 ACCTTTTCGTAGATGTAGCATTGC 59.667 41.667 0.00 0.00 35.04 3.56
2888 4116 4.572389 CCTTTTCGTAGATGTAGCATTGCT 59.428 41.667 16.63 16.63 38.70 3.91
2889 4117 5.277058 CCTTTTCGTAGATGTAGCATTGCTC 60.277 44.000 15.81 7.72 36.74 4.26
2890 4118 4.385358 TTCGTAGATGTAGCATTGCTCA 57.615 40.909 15.81 13.12 36.74 4.26
2891 4119 4.385358 TCGTAGATGTAGCATTGCTCAA 57.615 40.909 15.81 4.98 40.44 3.02
2892 4120 4.948847 TCGTAGATGTAGCATTGCTCAAT 58.051 39.130 15.81 9.97 40.44 2.57
2893 4121 6.084326 TCGTAGATGTAGCATTGCTCAATA 57.916 37.500 15.81 7.98 40.44 1.90
2894 4122 6.512297 TCGTAGATGTAGCATTGCTCAATAA 58.488 36.000 15.81 0.00 40.44 1.40
2895 4123 6.983890 TCGTAGATGTAGCATTGCTCAATAAA 59.016 34.615 15.81 0.00 40.44 1.40
2896 4124 7.657354 TCGTAGATGTAGCATTGCTCAATAAAT 59.343 33.333 15.81 0.00 40.44 1.40
2897 4125 8.925700 CGTAGATGTAGCATTGCTCAATAAATA 58.074 33.333 15.81 0.00 40.44 1.40
2899 4127 8.681486 AGATGTAGCATTGCTCAATAAATACA 57.319 30.769 15.81 11.49 40.44 2.29
2900 4128 8.781196 AGATGTAGCATTGCTCAATAAATACAG 58.219 33.333 15.81 0.00 40.44 2.74
2901 4129 6.728200 TGTAGCATTGCTCAATAAATACAGC 58.272 36.000 15.81 0.00 40.44 4.40
2902 4130 5.192327 AGCATTGCTCAATAAATACAGCC 57.808 39.130 5.03 0.00 30.62 4.85
2903 4131 4.646040 AGCATTGCTCAATAAATACAGCCA 59.354 37.500 5.03 0.00 30.62 4.75
2904 4132 5.127519 AGCATTGCTCAATAAATACAGCCAA 59.872 36.000 5.03 0.00 30.62 4.52
2905 4133 5.987347 GCATTGCTCAATAAATACAGCCAAT 59.013 36.000 0.16 0.00 0.00 3.16
2906 4134 6.145048 GCATTGCTCAATAAATACAGCCAATC 59.855 38.462 0.16 0.00 0.00 2.67
2907 4135 5.772825 TGCTCAATAAATACAGCCAATCC 57.227 39.130 0.00 0.00 0.00 3.01
2908 4136 5.199723 TGCTCAATAAATACAGCCAATCCA 58.800 37.500 0.00 0.00 0.00 3.41
2909 4137 5.655974 TGCTCAATAAATACAGCCAATCCAA 59.344 36.000 0.00 0.00 0.00 3.53
2910 4138 6.183360 TGCTCAATAAATACAGCCAATCCAAG 60.183 38.462 0.00 0.00 0.00 3.61
2911 4139 6.147864 TCAATAAATACAGCCAATCCAAGC 57.852 37.500 0.00 0.00 0.00 4.01
2912 4140 4.836125 ATAAATACAGCCAATCCAAGCG 57.164 40.909 0.00 0.00 0.00 4.68
2913 4141 0.740737 AATACAGCCAATCCAAGCGC 59.259 50.000 0.00 0.00 0.00 5.92
2914 4142 1.439353 ATACAGCCAATCCAAGCGCG 61.439 55.000 0.00 0.00 0.00 6.86
2915 4143 4.842091 CAGCCAATCCAAGCGCGC 62.842 66.667 26.66 26.66 0.00 6.86
2919 4147 2.513666 CAATCCAAGCGCGCCCTA 60.514 61.111 30.33 11.84 0.00 3.53
2920 4148 2.112198 CAATCCAAGCGCGCCCTAA 61.112 57.895 30.33 12.27 0.00 2.69
2921 4149 1.819632 AATCCAAGCGCGCCCTAAG 60.820 57.895 30.33 12.80 0.00 2.18
2929 4157 3.053896 GCGCCCTAAGCCGTGTTT 61.054 61.111 0.00 0.00 38.78 2.83
2930 4158 3.035576 GCGCCCTAAGCCGTGTTTC 62.036 63.158 0.00 0.00 38.78 2.78
2931 4159 2.396157 CGCCCTAAGCCGTGTTTCC 61.396 63.158 0.00 0.00 38.78 3.13
2932 4160 1.002502 GCCCTAAGCCGTGTTTCCT 60.003 57.895 0.00 0.00 34.35 3.36
2933 4161 0.251073 GCCCTAAGCCGTGTTTCCTA 59.749 55.000 0.00 0.00 34.35 2.94
2934 4162 2.010544 GCCCTAAGCCGTGTTTCCTAC 61.011 57.143 0.00 0.00 34.35 3.18
2935 4163 1.553704 CCCTAAGCCGTGTTTCCTACT 59.446 52.381 0.00 0.00 0.00 2.57
2936 4164 2.027469 CCCTAAGCCGTGTTTCCTACTT 60.027 50.000 0.00 0.00 0.00 2.24
2937 4165 3.558533 CCCTAAGCCGTGTTTCCTACTTT 60.559 47.826 0.00 0.00 0.00 2.66
2938 4166 3.683340 CCTAAGCCGTGTTTCCTACTTTC 59.317 47.826 0.00 0.00 0.00 2.62
2939 4167 1.792006 AGCCGTGTTTCCTACTTTCG 58.208 50.000 0.00 0.00 0.00 3.46
2940 4168 0.165295 GCCGTGTTTCCTACTTTCGC 59.835 55.000 0.00 0.00 0.00 4.70
2941 4169 1.792006 CCGTGTTTCCTACTTTCGCT 58.208 50.000 0.00 0.00 0.00 4.93
2942 4170 1.725164 CCGTGTTTCCTACTTTCGCTC 59.275 52.381 0.00 0.00 0.00 5.03
2943 4171 2.609737 CCGTGTTTCCTACTTTCGCTCT 60.610 50.000 0.00 0.00 0.00 4.09
2944 4172 3.366679 CCGTGTTTCCTACTTTCGCTCTA 60.367 47.826 0.00 0.00 0.00 2.43
2945 4173 3.607209 CGTGTTTCCTACTTTCGCTCTAC 59.393 47.826 0.00 0.00 0.00 2.59
2946 4174 4.615452 CGTGTTTCCTACTTTCGCTCTACT 60.615 45.833 0.00 0.00 0.00 2.57
2947 4175 4.858140 GTGTTTCCTACTTTCGCTCTACTC 59.142 45.833 0.00 0.00 0.00 2.59
2948 4176 4.765856 TGTTTCCTACTTTCGCTCTACTCT 59.234 41.667 0.00 0.00 0.00 3.24
2949 4177 5.942236 TGTTTCCTACTTTCGCTCTACTCTA 59.058 40.000 0.00 0.00 0.00 2.43
2950 4178 6.093771 TGTTTCCTACTTTCGCTCTACTCTAG 59.906 42.308 0.00 0.00 0.00 2.43
2951 4179 5.356291 TCCTACTTTCGCTCTACTCTAGT 57.644 43.478 0.00 0.00 0.00 2.57
2952 4180 5.358922 TCCTACTTTCGCTCTACTCTAGTC 58.641 45.833 0.00 0.00 0.00 2.59
2953 4181 4.512571 CCTACTTTCGCTCTACTCTAGTCC 59.487 50.000 0.00 0.00 0.00 3.85
2954 4182 3.952931 ACTTTCGCTCTACTCTAGTCCA 58.047 45.455 0.00 0.00 0.00 4.02
2955 4183 3.942748 ACTTTCGCTCTACTCTAGTCCAG 59.057 47.826 0.00 0.00 0.00 3.86
2956 4184 3.630892 TTCGCTCTACTCTAGTCCAGT 57.369 47.619 0.00 0.00 0.00 4.00
2957 4185 4.750021 TTCGCTCTACTCTAGTCCAGTA 57.250 45.455 0.00 0.00 0.00 2.74
2958 4186 4.959560 TCGCTCTACTCTAGTCCAGTAT 57.040 45.455 0.00 0.00 0.00 2.12
2959 4187 6.416631 TTCGCTCTACTCTAGTCCAGTATA 57.583 41.667 0.00 0.00 0.00 1.47
2960 4188 6.608539 TCGCTCTACTCTAGTCCAGTATAT 57.391 41.667 0.00 0.00 0.00 0.86
2961 4189 7.715266 TCGCTCTACTCTAGTCCAGTATATA 57.285 40.000 0.00 0.00 0.00 0.86
2962 4190 8.308851 TCGCTCTACTCTAGTCCAGTATATAT 57.691 38.462 0.00 0.00 0.00 0.86
2963 4191 8.198778 TCGCTCTACTCTAGTCCAGTATATATG 58.801 40.741 0.00 0.00 0.00 1.78
2964 4192 7.042321 CGCTCTACTCTAGTCCAGTATATATGC 60.042 44.444 0.00 0.00 0.00 3.14
2965 4193 7.771361 GCTCTACTCTAGTCCAGTATATATGCA 59.229 40.741 3.52 0.00 0.00 3.96
2966 4194 9.104965 CTCTACTCTAGTCCAGTATATATGCAC 57.895 40.741 3.52 0.00 0.00 4.57
2967 4195 8.827758 TCTACTCTAGTCCAGTATATATGCACT 58.172 37.037 3.52 1.24 0.00 4.40
2968 4196 9.456147 CTACTCTAGTCCAGTATATATGCACTT 57.544 37.037 3.52 0.00 0.00 3.16
2969 4197 8.343168 ACTCTAGTCCAGTATATATGCACTTC 57.657 38.462 3.52 0.00 0.00 3.01
2970 4198 7.945109 ACTCTAGTCCAGTATATATGCACTTCA 59.055 37.037 3.52 0.00 0.00 3.02
2971 4199 8.341892 TCTAGTCCAGTATATATGCACTTCAG 57.658 38.462 3.52 0.00 0.00 3.02
2972 4200 5.788450 AGTCCAGTATATATGCACTTCAGC 58.212 41.667 3.52 0.00 0.00 4.26
2979 4207 4.239162 TGCACTTCAGCACTTGCA 57.761 50.000 3.62 0.00 45.16 4.08
2980 4208 2.491291 TGCACTTCAGCACTTGCAA 58.509 47.368 3.62 0.00 41.90 4.08
2981 4209 0.816373 TGCACTTCAGCACTTGCAAA 59.184 45.000 0.00 0.00 41.90 3.68
2982 4210 1.204231 TGCACTTCAGCACTTGCAAAA 59.796 42.857 0.00 0.00 41.90 2.44
2983 4211 2.270047 GCACTTCAGCACTTGCAAAAA 58.730 42.857 0.00 0.00 45.16 1.94
3003 4231 5.382618 AAAAAGAAGATGCTAGCCAACAG 57.617 39.130 13.29 0.00 0.00 3.16
3004 4232 3.988976 AAGAAGATGCTAGCCAACAGA 57.011 42.857 13.29 0.00 0.00 3.41
3005 4233 3.540314 AGAAGATGCTAGCCAACAGAG 57.460 47.619 13.29 0.00 0.00 3.35
3006 4234 2.170187 AGAAGATGCTAGCCAACAGAGG 59.830 50.000 13.29 0.00 0.00 3.69
3007 4235 0.835941 AGATGCTAGCCAACAGAGGG 59.164 55.000 13.29 0.00 0.00 4.30
3008 4236 0.543749 GATGCTAGCCAACAGAGGGT 59.456 55.000 13.29 0.00 43.00 4.34
3009 4237 0.543749 ATGCTAGCCAACAGAGGGTC 59.456 55.000 13.29 0.00 40.47 4.46
3010 4238 1.222113 GCTAGCCAACAGAGGGTCC 59.778 63.158 2.29 0.00 40.47 4.46
3011 4239 1.908483 CTAGCCAACAGAGGGTCCC 59.092 63.158 0.00 0.00 40.47 4.46
3012 4240 0.909610 CTAGCCAACAGAGGGTCCCA 60.910 60.000 11.55 0.00 40.47 4.37
3013 4241 0.909610 TAGCCAACAGAGGGTCCCAG 60.910 60.000 11.55 1.77 40.47 4.45
3014 4242 2.224159 GCCAACAGAGGGTCCCAGA 61.224 63.158 11.55 0.00 0.00 3.86
3015 4243 1.986413 CCAACAGAGGGTCCCAGAG 59.014 63.158 11.55 0.97 0.00 3.35
3016 4244 1.557269 CCAACAGAGGGTCCCAGAGG 61.557 65.000 11.55 4.13 0.00 3.69
3017 4245 0.545309 CAACAGAGGGTCCCAGAGGA 60.545 60.000 11.55 0.00 41.08 3.71
3018 4246 0.193574 AACAGAGGGTCCCAGAGGAA 59.806 55.000 11.55 0.00 46.38 3.36
3019 4247 0.419459 ACAGAGGGTCCCAGAGGAAT 59.581 55.000 11.55 0.00 46.38 3.01
3020 4248 1.203492 ACAGAGGGTCCCAGAGGAATT 60.203 52.381 11.55 0.00 46.38 2.17
3021 4249 1.488393 CAGAGGGTCCCAGAGGAATTC 59.512 57.143 11.55 0.00 46.38 2.17
3022 4250 1.367848 AGAGGGTCCCAGAGGAATTCT 59.632 52.381 11.55 0.00 46.38 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.382832 CCGGTCAACGCCCTCTCT 61.383 66.667 0.00 0.00 42.52 3.10
80 83 2.010582 TTGCCTTGGACGTTGTTGCC 62.011 55.000 0.00 0.00 0.00 4.52
107 110 7.309744 CCCATATTAACTGTCAATGGTTGTTGT 60.310 37.037 0.00 0.00 36.21 3.32
122 125 9.300681 CACATTTCATCCATACCCATATTAACT 57.699 33.333 0.00 0.00 0.00 2.24
143 146 4.532126 TCTGACCATGAGTACTTCCACATT 59.468 41.667 0.00 0.00 0.00 2.71
195 198 4.581409 TGGATGGTTGATTCATGCATACAG 59.419 41.667 0.00 0.00 37.89 2.74
252 255 0.873743 AAAACGCGGTGCAAACCATG 60.874 50.000 12.47 0.00 0.00 3.66
253 256 0.669077 TAAAACGCGGTGCAAACCAT 59.331 45.000 12.47 0.00 0.00 3.55
267 270 4.098416 GCGATCATGCTGGAAAGTAAAAC 58.902 43.478 0.00 0.00 0.00 2.43
316 319 1.145819 GGCAAGAGAGGCTAGGCAG 59.854 63.158 19.70 2.13 0.00 4.85
380 383 7.485810 AGACGGTTTTGCAGTTTAAATAACTT 58.514 30.769 0.00 0.00 0.00 2.66
382 385 7.688478 AAGACGGTTTTGCAGTTTAAATAAC 57.312 32.000 0.00 0.00 0.00 1.89
386 389 9.968870 AAATATAAGACGGTTTTGCAGTTTAAA 57.031 25.926 0.00 0.00 0.00 1.52
389 392 9.005777 TCTAAATATAAGACGGTTTTGCAGTTT 57.994 29.630 0.00 0.00 0.00 2.66
444 448 3.593780 AGAAGCCAGGGTTATTCTCCTTT 59.406 43.478 3.13 0.00 0.00 3.11
477 483 6.560003 TGTCTTCTTCATGGTGGTATACAT 57.440 37.500 5.01 0.00 0.00 2.29
479 485 7.727181 AGTATGTCTTCTTCATGGTGGTATAC 58.273 38.462 0.00 0.00 0.00 1.47
504 510 7.707624 TTTAGTCTTCCCTGTTTATACGAGA 57.292 36.000 0.00 0.00 0.00 4.04
505 511 8.943909 ATTTTAGTCTTCCCTGTTTATACGAG 57.056 34.615 0.00 0.00 0.00 4.18
556 562 8.586570 TCACAATTTGAATTCGCAGTAAAAAT 57.413 26.923 2.79 0.00 0.00 1.82
558 564 7.864882 TGATCACAATTTGAATTCGCAGTAAAA 59.135 29.630 2.79 0.00 37.92 1.52
559 565 7.366513 TGATCACAATTTGAATTCGCAGTAAA 58.633 30.769 2.79 0.00 37.92 2.01
560 566 6.907741 TGATCACAATTTGAATTCGCAGTAA 58.092 32.000 2.79 0.00 37.92 2.24
575 641 4.019501 GGCTAGATCCCAGATGATCACAAT 60.020 45.833 0.00 0.00 42.95 2.71
583 649 1.698532 AGCAAGGCTAGATCCCAGATG 59.301 52.381 0.00 0.00 36.99 2.90
584 650 1.977129 GAGCAAGGCTAGATCCCAGAT 59.023 52.381 0.00 0.00 39.88 2.90
588 654 1.618343 GAGAGAGCAAGGCTAGATCCC 59.382 57.143 0.00 0.00 39.88 3.85
589 655 2.297033 CTGAGAGAGCAAGGCTAGATCC 59.703 54.545 0.00 0.00 39.88 3.36
591 657 2.318908 CCTGAGAGAGCAAGGCTAGAT 58.681 52.381 0.00 0.00 39.88 1.98
593 659 0.104671 GCCTGAGAGAGCAAGGCTAG 59.895 60.000 5.68 0.00 39.88 3.42
595 661 2.988800 GCCTGAGAGAGCAAGGCT 59.011 61.111 5.68 0.00 43.88 4.58
609 676 2.136878 CCGATCCACTGCCTAGCCT 61.137 63.158 0.00 0.00 0.00 4.58
681 968 3.289211 TGGGGCTCTGGGAGGGTA 61.289 66.667 0.00 0.00 0.00 3.69
697 1830 1.828768 GAGATGGACTGGGGCTCTG 59.171 63.158 0.00 0.00 0.00 3.35
698 1831 1.760086 CGAGATGGACTGGGGCTCT 60.760 63.158 0.00 0.00 0.00 4.09
699 1832 2.818132 CGAGATGGACTGGGGCTC 59.182 66.667 0.00 0.00 0.00 4.70
700 1833 3.474570 GCGAGATGGACTGGGGCT 61.475 66.667 0.00 0.00 0.00 5.19
701 1834 4.554036 GGCGAGATGGACTGGGGC 62.554 72.222 0.00 0.00 0.00 5.80
702 1835 2.669133 TTGGCGAGATGGACTGGGG 61.669 63.158 0.00 0.00 0.00 4.96
703 1836 1.450312 GTTGGCGAGATGGACTGGG 60.450 63.158 0.00 0.00 0.00 4.45
704 1837 1.811266 CGTTGGCGAGATGGACTGG 60.811 63.158 0.00 0.00 41.33 4.00
705 1838 1.811266 CCGTTGGCGAGATGGACTG 60.811 63.158 0.00 0.00 41.33 3.51
866 2024 1.002544 GGTGTTCTCTGGAGTTGGGAG 59.997 57.143 0.00 0.00 0.00 4.30
872 2030 0.469331 TCGTGGGTGTTCTCTGGAGT 60.469 55.000 0.00 0.00 0.00 3.85
884 2047 2.494918 GCGATGCTAGTCGTGGGT 59.505 61.111 4.86 0.00 43.27 4.51
897 2060 2.034879 CACGAGCAAGTTGGGCGAT 61.035 57.895 4.75 0.00 36.08 4.58
909 2092 1.078848 AGAGCAATGGGTCACGAGC 60.079 57.895 1.37 0.00 43.97 5.03
927 2110 0.103755 CAAGATGCGGCTGCTAGAGA 59.896 55.000 20.27 0.00 43.34 3.10
982 2165 2.005451 CATGGAGAAAGGAAGCTCACG 58.995 52.381 0.00 0.00 32.83 4.35
1008 2191 3.197790 CTCATGTCCGCCTTGCCG 61.198 66.667 0.00 0.00 0.00 5.69
1879 3062 4.308458 TGCCGACGGGGTCAAGTG 62.308 66.667 17.22 0.00 38.44 3.16
1880 3063 4.003788 CTGCCGACGGGGTCAAGT 62.004 66.667 17.22 0.00 38.44 3.16
1905 3088 2.590575 ACGCCACAAGGTTCCACG 60.591 61.111 0.00 0.00 37.19 4.94
2013 3199 3.067461 ACATTCTCTCTGATCAGTACGGC 59.933 47.826 21.92 0.00 0.00 5.68
2120 3309 2.868899 AGAAGCCCAAGAAAACAGAGG 58.131 47.619 0.00 0.00 0.00 3.69
2121 3310 4.646572 AGTAGAAGCCCAAGAAAACAGAG 58.353 43.478 0.00 0.00 0.00 3.35
2178 3367 6.566197 AGGTTGACATTCAATTCTCAGTTC 57.434 37.500 0.00 0.00 38.79 3.01
2202 3391 3.549997 GCAGCTTGCAAGAAAACGA 57.450 47.368 30.39 0.00 44.26 3.85
2230 3419 9.566432 AGATAATAATGGGCTATAGCTTATTGC 57.434 33.333 25.83 20.39 41.70 3.56
2318 3512 6.020360 GCTTGTGCAAAACAAAACAAAACAAA 60.020 30.769 0.00 0.00 44.97 2.83
2319 3513 5.456822 GCTTGTGCAAAACAAAACAAAACAA 59.543 32.000 0.00 0.00 44.97 2.83
2320 3514 4.972440 GCTTGTGCAAAACAAAACAAAACA 59.028 33.333 0.00 0.00 44.97 2.83
2321 3515 4.086384 CGCTTGTGCAAAACAAAACAAAAC 59.914 37.500 0.00 0.00 44.97 2.43
2322 3516 4.214437 CGCTTGTGCAAAACAAAACAAAA 58.786 34.783 0.00 0.00 44.97 2.44
2365 3562 0.549169 AGTTGGTTGGGGGCTAGCTA 60.549 55.000 15.72 0.00 0.00 3.32
2372 3569 1.048160 AACTTGCAGTTGGTTGGGGG 61.048 55.000 1.44 0.00 37.00 5.40
2382 3579 5.673337 CAAGTACATGTACAACTTGCAGT 57.327 39.130 32.02 10.23 42.42 4.40
2419 3645 6.874288 ATTTAGGCTCTCAATTATCAGCAC 57.126 37.500 0.00 0.00 33.22 4.40
2456 3682 2.158608 AGTGCAAGCTCCCCCATTATAC 60.159 50.000 0.00 0.00 0.00 1.47
2457 3683 2.135189 AGTGCAAGCTCCCCCATTATA 58.865 47.619 0.00 0.00 0.00 0.98
2505 3733 1.754226 TCCCCCATTATGCTTTTTCGC 59.246 47.619 0.00 0.00 0.00 4.70
2507 3735 3.374764 ACCTCCCCCATTATGCTTTTTC 58.625 45.455 0.00 0.00 0.00 2.29
2529 3757 4.240103 ACGCCTGCAGTGCACTGA 62.240 61.111 43.32 28.20 46.59 3.41
2563 3791 2.030007 ACAACCACAAATCAATGGCTCG 60.030 45.455 0.00 0.00 39.84 5.03
2583 3811 3.131396 CTGAAATGCCCATACGGTAGAC 58.869 50.000 0.00 0.00 0.00 2.59
2607 3835 4.023291 ACGACAATCCAATTATGCCCTTT 58.977 39.130 0.00 0.00 0.00 3.11
2608 3836 3.631250 ACGACAATCCAATTATGCCCTT 58.369 40.909 0.00 0.00 0.00 3.95
2609 3837 3.297134 ACGACAATCCAATTATGCCCT 57.703 42.857 0.00 0.00 0.00 5.19
2610 3838 4.359706 GAAACGACAATCCAATTATGCCC 58.640 43.478 0.00 0.00 0.00 5.36
2611 3839 4.142271 TGGAAACGACAATCCAATTATGCC 60.142 41.667 0.00 0.00 42.61 4.40
2612 3840 4.798387 GTGGAAACGACAATCCAATTATGC 59.202 41.667 0.00 0.00 46.78 3.14
2613 3841 6.128035 TGAGTGGAAACGACAATCCAATTATG 60.128 38.462 0.00 0.00 46.78 1.90
2614 3842 5.943416 TGAGTGGAAACGACAATCCAATTAT 59.057 36.000 0.00 0.00 46.78 1.28
2615 3843 5.309638 TGAGTGGAAACGACAATCCAATTA 58.690 37.500 0.00 0.00 46.78 1.40
2616 3844 4.141287 TGAGTGGAAACGACAATCCAATT 58.859 39.130 0.00 0.00 46.78 2.32
2617 3845 3.750371 TGAGTGGAAACGACAATCCAAT 58.250 40.909 0.00 0.00 46.78 3.16
2618 3846 3.201353 TGAGTGGAAACGACAATCCAA 57.799 42.857 0.00 0.00 46.78 3.53
2619 3847 2.920724 TGAGTGGAAACGACAATCCA 57.079 45.000 0.00 0.00 43.32 3.41
2620 3848 4.766404 ATTTGAGTGGAAACGACAATCC 57.234 40.909 0.00 0.00 32.40 3.01
2621 3849 5.391629 GGGTATTTGAGTGGAAACGACAATC 60.392 44.000 0.00 0.00 33.87 2.67
2622 3850 4.457949 GGGTATTTGAGTGGAAACGACAAT 59.542 41.667 0.00 0.00 0.00 2.71
2623 3851 3.816523 GGGTATTTGAGTGGAAACGACAA 59.183 43.478 0.00 0.00 0.00 3.18
2624 3852 3.071892 AGGGTATTTGAGTGGAAACGACA 59.928 43.478 0.00 0.00 0.00 4.35
2625 3853 3.671716 AGGGTATTTGAGTGGAAACGAC 58.328 45.455 0.00 0.00 0.00 4.34
2626 3854 4.069304 CAAGGGTATTTGAGTGGAAACGA 58.931 43.478 0.00 0.00 0.00 3.85
2627 3855 3.818773 ACAAGGGTATTTGAGTGGAAACG 59.181 43.478 0.00 0.00 0.00 3.60
2628 3856 6.235664 TCTACAAGGGTATTTGAGTGGAAAC 58.764 40.000 0.00 0.00 0.00 2.78
2629 3857 6.442541 TCTACAAGGGTATTTGAGTGGAAA 57.557 37.500 0.00 0.00 0.00 3.13
2630 3858 6.442541 TTCTACAAGGGTATTTGAGTGGAA 57.557 37.500 0.00 0.00 0.00 3.53
2631 3859 6.442541 TTTCTACAAGGGTATTTGAGTGGA 57.557 37.500 0.00 0.00 0.00 4.02
2632 3860 7.703058 ATTTTCTACAAGGGTATTTGAGTGG 57.297 36.000 0.00 0.00 0.00 4.00
2636 3864 9.550406 CCGTATATTTTCTACAAGGGTATTTGA 57.450 33.333 0.00 0.00 0.00 2.69
2637 3865 9.550406 TCCGTATATTTTCTACAAGGGTATTTG 57.450 33.333 0.00 0.00 0.00 2.32
2638 3866 9.551734 GTCCGTATATTTTCTACAAGGGTATTT 57.448 33.333 0.00 0.00 0.00 1.40
2639 3867 8.152898 GGTCCGTATATTTTCTACAAGGGTATT 58.847 37.037 0.00 0.00 0.00 1.89
2640 3868 7.511714 AGGTCCGTATATTTTCTACAAGGGTAT 59.488 37.037 0.00 0.00 0.00 2.73
2641 3869 6.840705 AGGTCCGTATATTTTCTACAAGGGTA 59.159 38.462 0.00 0.00 0.00 3.69
2642 3870 5.664457 AGGTCCGTATATTTTCTACAAGGGT 59.336 40.000 0.00 0.00 0.00 4.34
2643 3871 6.170846 AGGTCCGTATATTTTCTACAAGGG 57.829 41.667 0.00 0.00 0.00 3.95
2644 3872 6.221659 GGAGGTCCGTATATTTTCTACAAGG 58.778 44.000 0.00 0.00 0.00 3.61
2669 3897 0.168128 CTGGAAATGAAACGGCCGAC 59.832 55.000 35.90 22.05 0.00 4.79
2670 3898 1.582610 GCTGGAAATGAAACGGCCGA 61.583 55.000 35.90 10.13 0.00 5.54
2671 3899 1.154035 GCTGGAAATGAAACGGCCG 60.154 57.895 26.86 26.86 0.00 6.13
2672 3900 4.889427 GCTGGAAATGAAACGGCC 57.111 55.556 0.00 0.00 0.00 6.13
2673 3901 1.154035 CGGCTGGAAATGAAACGGC 60.154 57.895 0.00 0.00 35.80 5.68
2674 3902 0.878416 TTCGGCTGGAAATGAAACGG 59.122 50.000 0.00 0.00 0.00 4.44
2675 3903 2.315901 GTTTCGGCTGGAAATGAAACG 58.684 47.619 6.73 0.00 45.80 3.60
2676 3904 3.565516 GAGTTTCGGCTGGAAATGAAAC 58.434 45.455 8.25 8.25 45.80 2.78
2677 3905 2.556622 GGAGTTTCGGCTGGAAATGAAA 59.443 45.455 0.00 0.00 45.80 2.69
2678 3906 2.159382 GGAGTTTCGGCTGGAAATGAA 58.841 47.619 0.00 0.00 45.80 2.57
2679 3907 1.351017 AGGAGTTTCGGCTGGAAATGA 59.649 47.619 0.00 0.00 45.80 2.57
2680 3908 1.826385 AGGAGTTTCGGCTGGAAATG 58.174 50.000 0.00 0.00 45.80 2.32
2681 3909 2.437413 GAAGGAGTTTCGGCTGGAAAT 58.563 47.619 6.73 0.00 45.80 2.17
2682 3910 1.892209 GAAGGAGTTTCGGCTGGAAA 58.108 50.000 0.00 0.00 42.23 3.13
2683 3911 3.625745 GAAGGAGTTTCGGCTGGAA 57.374 52.632 0.00 0.00 0.00 3.53
2696 3924 2.489938 ATTTACCAAGCTGCGAAGGA 57.510 45.000 13.52 0.00 0.00 3.36
2697 3925 3.438781 TGTAATTTACCAAGCTGCGAAGG 59.561 43.478 4.17 6.53 0.00 3.46
2698 3926 4.083537 TGTGTAATTTACCAAGCTGCGAAG 60.084 41.667 4.17 0.00 0.00 3.79
2699 3927 3.815962 TGTGTAATTTACCAAGCTGCGAA 59.184 39.130 4.17 0.00 0.00 4.70
2700 3928 3.403968 TGTGTAATTTACCAAGCTGCGA 58.596 40.909 4.17 0.00 0.00 5.10
2701 3929 3.822594 TGTGTAATTTACCAAGCTGCG 57.177 42.857 4.17 0.00 0.00 5.18
2702 3930 5.059404 ACATGTGTAATTTACCAAGCTGC 57.941 39.130 0.00 0.00 0.00 5.25
2703 3931 9.638239 AATTTACATGTGTAATTTACCAAGCTG 57.362 29.630 9.11 1.54 39.89 4.24
2715 3943 9.228949 ACACCGGTATTTAATTTACATGTGTAA 57.771 29.630 6.87 3.02 35.69 2.41
2716 3944 8.789825 ACACCGGTATTTAATTTACATGTGTA 57.210 30.769 6.87 0.00 35.69 2.90
2717 3945 7.690952 ACACCGGTATTTAATTTACATGTGT 57.309 32.000 6.87 12.28 34.11 3.72
2734 3962 7.546316 GCATTTTTGGTATTTAAATACACCGGT 59.454 33.333 30.11 0.00 42.35 5.28
2735 3963 7.762159 AGCATTTTTGGTATTTAAATACACCGG 59.238 33.333 30.11 17.41 42.35 5.28
2736 3964 8.696410 AGCATTTTTGGTATTTAAATACACCG 57.304 30.769 30.11 16.40 42.35 4.94
2739 3967 9.810545 GCCTAGCATTTTTGGTATTTAAATACA 57.189 29.630 30.11 18.22 42.35 2.29
2740 3968 9.256477 GGCCTAGCATTTTTGGTATTTAAATAC 57.744 33.333 24.31 24.31 40.37 1.89
2741 3969 9.207868 AGGCCTAGCATTTTTGGTATTTAAATA 57.792 29.630 1.29 3.71 0.00 1.40
2742 3970 8.089625 AGGCCTAGCATTTTTGGTATTTAAAT 57.910 30.769 1.29 5.89 0.00 1.40
2743 3971 7.489239 AGGCCTAGCATTTTTGGTATTTAAA 57.511 32.000 1.29 0.00 0.00 1.52
2744 3972 7.201750 CGTAGGCCTAGCATTTTTGGTATTTAA 60.202 37.037 14.38 0.00 0.00 1.52
2745 3973 6.261381 CGTAGGCCTAGCATTTTTGGTATTTA 59.739 38.462 14.38 0.00 0.00 1.40
2746 3974 5.067283 CGTAGGCCTAGCATTTTTGGTATTT 59.933 40.000 14.38 0.00 0.00 1.40
2747 3975 4.578928 CGTAGGCCTAGCATTTTTGGTATT 59.421 41.667 14.38 0.00 0.00 1.89
2748 3976 4.134563 CGTAGGCCTAGCATTTTTGGTAT 58.865 43.478 14.38 0.00 0.00 2.73
2749 3977 3.054948 ACGTAGGCCTAGCATTTTTGGTA 60.055 43.478 14.38 0.00 0.00 3.25
2750 3978 2.290705 ACGTAGGCCTAGCATTTTTGGT 60.291 45.455 14.38 0.00 0.00 3.67
2751 3979 2.365582 ACGTAGGCCTAGCATTTTTGG 58.634 47.619 14.38 0.00 0.00 3.28
2752 3980 4.035208 CCTTACGTAGGCCTAGCATTTTTG 59.965 45.833 14.38 0.00 37.17 2.44
2753 3981 4.196971 CCTTACGTAGGCCTAGCATTTTT 58.803 43.478 14.38 0.00 37.17 1.94
2754 3982 3.805207 CCTTACGTAGGCCTAGCATTTT 58.195 45.455 14.38 0.00 37.17 1.82
2755 3983 3.470645 CCTTACGTAGGCCTAGCATTT 57.529 47.619 14.38 0.00 37.17 2.32
2774 4002 8.515695 AAATTTAGGTAGGTTACATAGCAACC 57.484 34.615 8.86 0.00 44.89 3.77
2775 4003 9.999009 GAAAATTTAGGTAGGTTACATAGCAAC 57.001 33.333 8.86 0.00 0.00 4.17
2776 4004 9.969001 AGAAAATTTAGGTAGGTTACATAGCAA 57.031 29.630 8.86 0.00 0.00 3.91
2777 4005 9.969001 AAGAAAATTTAGGTAGGTTACATAGCA 57.031 29.630 8.86 0.00 0.00 3.49
2782 4010 9.643735 TGGAAAAGAAAATTTAGGTAGGTTACA 57.356 29.630 0.00 0.00 0.00 2.41
2783 4011 9.903682 GTGGAAAAGAAAATTTAGGTAGGTTAC 57.096 33.333 0.00 0.00 0.00 2.50
2784 4012 9.081204 GGTGGAAAAGAAAATTTAGGTAGGTTA 57.919 33.333 0.00 0.00 0.00 2.85
2785 4013 7.565768 TGGTGGAAAAGAAAATTTAGGTAGGTT 59.434 33.333 0.00 0.00 0.00 3.50
2786 4014 7.070629 TGGTGGAAAAGAAAATTTAGGTAGGT 58.929 34.615 0.00 0.00 0.00 3.08
2787 4015 7.533289 TGGTGGAAAAGAAAATTTAGGTAGG 57.467 36.000 0.00 0.00 0.00 3.18
2788 4016 8.638873 AGTTGGTGGAAAAGAAAATTTAGGTAG 58.361 33.333 0.00 0.00 0.00 3.18
2789 4017 8.541899 AGTTGGTGGAAAAGAAAATTTAGGTA 57.458 30.769 0.00 0.00 0.00 3.08
2790 4018 7.432148 AGTTGGTGGAAAAGAAAATTTAGGT 57.568 32.000 0.00 0.00 0.00 3.08
2791 4019 9.825109 TTTAGTTGGTGGAAAAGAAAATTTAGG 57.175 29.630 0.00 0.00 0.00 2.69
2793 4021 9.320352 GCTTTAGTTGGTGGAAAAGAAAATTTA 57.680 29.630 0.00 0.00 31.96 1.40
2794 4022 7.282224 GGCTTTAGTTGGTGGAAAAGAAAATTT 59.718 33.333 0.00 0.00 31.96 1.82
2795 4023 6.765989 GGCTTTAGTTGGTGGAAAAGAAAATT 59.234 34.615 0.00 0.00 31.96 1.82
2796 4024 6.288294 GGCTTTAGTTGGTGGAAAAGAAAAT 58.712 36.000 0.00 0.00 31.96 1.82
2797 4025 5.395879 GGGCTTTAGTTGGTGGAAAAGAAAA 60.396 40.000 0.00 0.00 31.96 2.29
2798 4026 4.100344 GGGCTTTAGTTGGTGGAAAAGAAA 59.900 41.667 0.00 0.00 31.96 2.52
2799 4027 3.639561 GGGCTTTAGTTGGTGGAAAAGAA 59.360 43.478 0.00 0.00 31.96 2.52
2800 4028 3.227614 GGGCTTTAGTTGGTGGAAAAGA 58.772 45.455 0.00 0.00 31.96 2.52
2801 4029 2.962421 TGGGCTTTAGTTGGTGGAAAAG 59.038 45.455 0.00 0.00 33.15 2.27
2802 4030 3.033659 TGGGCTTTAGTTGGTGGAAAA 57.966 42.857 0.00 0.00 0.00 2.29
2803 4031 2.757894 TGGGCTTTAGTTGGTGGAAA 57.242 45.000 0.00 0.00 0.00 3.13
2804 4032 2.757894 TTGGGCTTTAGTTGGTGGAA 57.242 45.000 0.00 0.00 0.00 3.53
2805 4033 2.990740 ATTGGGCTTTAGTTGGTGGA 57.009 45.000 0.00 0.00 0.00 4.02
2806 4034 5.245075 TCTTTAATTGGGCTTTAGTTGGTGG 59.755 40.000 0.00 0.00 0.00 4.61
2807 4035 6.015434 AGTCTTTAATTGGGCTTTAGTTGGTG 60.015 38.462 0.00 0.00 0.00 4.17
2808 4036 6.015434 CAGTCTTTAATTGGGCTTTAGTTGGT 60.015 38.462 0.00 0.00 0.00 3.67
2809 4037 6.389906 CAGTCTTTAATTGGGCTTTAGTTGG 58.610 40.000 0.00 0.00 0.00 3.77
2810 4038 5.863935 GCAGTCTTTAATTGGGCTTTAGTTG 59.136 40.000 0.00 0.00 0.00 3.16
2811 4039 5.047306 GGCAGTCTTTAATTGGGCTTTAGTT 60.047 40.000 0.00 0.00 0.00 2.24
2812 4040 4.462834 GGCAGTCTTTAATTGGGCTTTAGT 59.537 41.667 0.00 0.00 0.00 2.24
2813 4041 4.462483 TGGCAGTCTTTAATTGGGCTTTAG 59.538 41.667 0.00 0.00 0.00 1.85
2814 4042 4.411927 TGGCAGTCTTTAATTGGGCTTTA 58.588 39.130 0.00 0.00 0.00 1.85
2815 4043 3.238597 TGGCAGTCTTTAATTGGGCTTT 58.761 40.909 0.00 0.00 0.00 3.51
2816 4044 2.888212 TGGCAGTCTTTAATTGGGCTT 58.112 42.857 0.00 0.00 0.00 4.35
2817 4045 2.603075 TGGCAGTCTTTAATTGGGCT 57.397 45.000 0.00 0.00 0.00 5.19
2818 4046 3.676291 TTTGGCAGTCTTTAATTGGGC 57.324 42.857 0.00 0.00 0.00 5.36
2819 4047 5.404466 TGATTTGGCAGTCTTTAATTGGG 57.596 39.130 4.05 0.00 0.00 4.12
2820 4048 6.044682 GGATGATTTGGCAGTCTTTAATTGG 58.955 40.000 4.05 0.00 0.00 3.16
2821 4049 6.870769 AGGATGATTTGGCAGTCTTTAATTG 58.129 36.000 4.05 0.00 0.00 2.32
2822 4050 7.615365 TGTAGGATGATTTGGCAGTCTTTAATT 59.385 33.333 4.05 0.00 0.00 1.40
2823 4051 7.067494 GTGTAGGATGATTTGGCAGTCTTTAAT 59.933 37.037 4.05 0.00 0.00 1.40
2824 4052 6.374333 GTGTAGGATGATTTGGCAGTCTTTAA 59.626 38.462 4.05 0.00 0.00 1.52
2825 4053 5.880332 GTGTAGGATGATTTGGCAGTCTTTA 59.120 40.000 4.05 0.00 0.00 1.85
2826 4054 4.702131 GTGTAGGATGATTTGGCAGTCTTT 59.298 41.667 4.05 0.00 0.00 2.52
2827 4055 4.265073 GTGTAGGATGATTTGGCAGTCTT 58.735 43.478 4.05 0.00 0.00 3.01
2828 4056 3.679917 CGTGTAGGATGATTTGGCAGTCT 60.680 47.826 4.05 0.00 0.00 3.24
2829 4057 2.609459 CGTGTAGGATGATTTGGCAGTC 59.391 50.000 0.00 0.00 0.00 3.51
2830 4058 2.236146 TCGTGTAGGATGATTTGGCAGT 59.764 45.455 0.00 0.00 0.00 4.40
2831 4059 2.905075 TCGTGTAGGATGATTTGGCAG 58.095 47.619 0.00 0.00 0.00 4.85
2832 4060 3.270027 CTTCGTGTAGGATGATTTGGCA 58.730 45.455 0.00 0.00 0.00 4.92
2833 4061 2.614057 CCTTCGTGTAGGATGATTTGGC 59.386 50.000 0.00 0.00 37.50 4.52
2834 4062 3.873910 ACCTTCGTGTAGGATGATTTGG 58.126 45.455 7.76 0.00 38.73 3.28
2835 4063 4.503007 CGTACCTTCGTGTAGGATGATTTG 59.497 45.833 7.76 0.00 38.73 2.32
2836 4064 4.159135 ACGTACCTTCGTGTAGGATGATTT 59.841 41.667 7.76 0.00 42.56 2.17
2837 4065 3.698040 ACGTACCTTCGTGTAGGATGATT 59.302 43.478 7.76 0.00 42.56 2.57
2838 4066 3.285484 ACGTACCTTCGTGTAGGATGAT 58.715 45.455 7.76 0.00 42.56 2.45
2839 4067 2.715046 ACGTACCTTCGTGTAGGATGA 58.285 47.619 7.76 0.00 42.56 2.92
2840 4068 4.206698 CTACGTACCTTCGTGTAGGATG 57.793 50.000 7.76 1.23 43.93 3.51
2844 4072 3.181506 GGTTCCTACGTACCTTCGTGTAG 60.182 52.174 0.00 0.00 43.93 2.74
2845 4073 2.747446 GGTTCCTACGTACCTTCGTGTA 59.253 50.000 0.00 0.00 43.93 2.90
2846 4074 1.541588 GGTTCCTACGTACCTTCGTGT 59.458 52.381 0.00 0.00 43.93 4.49
2847 4075 1.815003 AGGTTCCTACGTACCTTCGTG 59.185 52.381 1.73 0.00 42.01 4.35
2848 4076 2.206576 AGGTTCCTACGTACCTTCGT 57.793 50.000 1.73 0.00 42.01 3.85
2852 4080 2.893489 ACGAAAAGGTTCCTACGTACCT 59.107 45.455 1.73 1.73 46.58 3.08
2853 4081 3.303881 ACGAAAAGGTTCCTACGTACC 57.696 47.619 13.40 0.00 32.42 3.34
2854 4082 5.296813 TCTACGAAAAGGTTCCTACGTAC 57.703 43.478 15.58 0.00 35.66 3.67
2855 4083 5.415701 ACATCTACGAAAAGGTTCCTACGTA 59.584 40.000 17.21 17.21 35.66 3.57
2856 4084 4.219288 ACATCTACGAAAAGGTTCCTACGT 59.781 41.667 16.94 16.94 37.68 3.57
2857 4085 4.741342 ACATCTACGAAAAGGTTCCTACG 58.259 43.478 0.00 9.82 0.00 3.51
2858 4086 5.747675 GCTACATCTACGAAAAGGTTCCTAC 59.252 44.000 0.00 0.00 0.00 3.18
2859 4087 5.419788 TGCTACATCTACGAAAAGGTTCCTA 59.580 40.000 0.00 0.00 0.00 2.94
2860 4088 4.222145 TGCTACATCTACGAAAAGGTTCCT 59.778 41.667 0.00 0.00 0.00 3.36
2861 4089 4.501071 TGCTACATCTACGAAAAGGTTCC 58.499 43.478 0.00 0.00 0.00 3.62
2862 4090 6.478588 CAATGCTACATCTACGAAAAGGTTC 58.521 40.000 0.00 0.00 0.00 3.62
2863 4091 5.163754 GCAATGCTACATCTACGAAAAGGTT 60.164 40.000 0.00 0.00 0.00 3.50
2864 4092 4.332819 GCAATGCTACATCTACGAAAAGGT 59.667 41.667 0.00 0.00 0.00 3.50
2865 4093 4.572389 AGCAATGCTACATCTACGAAAAGG 59.428 41.667 5.69 0.00 36.99 3.11
2866 4094 5.291858 TGAGCAATGCTACATCTACGAAAAG 59.708 40.000 8.12 0.00 39.88 2.27
2867 4095 5.175127 TGAGCAATGCTACATCTACGAAAA 58.825 37.500 8.12 0.00 39.88 2.29
2868 4096 4.754322 TGAGCAATGCTACATCTACGAAA 58.246 39.130 8.12 0.00 39.88 3.46
2869 4097 4.385358 TGAGCAATGCTACATCTACGAA 57.615 40.909 8.12 0.00 39.88 3.85
2870 4098 4.385358 TTGAGCAATGCTACATCTACGA 57.615 40.909 8.12 0.00 39.88 3.43
2871 4099 6.769608 TTATTGAGCAATGCTACATCTACG 57.230 37.500 8.12 0.00 39.88 3.51
2873 4101 9.777297 TGTATTTATTGAGCAATGCTACATCTA 57.223 29.630 8.12 0.00 39.88 1.98
2874 4102 8.681486 TGTATTTATTGAGCAATGCTACATCT 57.319 30.769 8.12 2.31 39.88 2.90
2875 4103 7.536622 GCTGTATTTATTGAGCAATGCTACATC 59.463 37.037 8.12 0.00 39.88 3.06
2876 4104 7.365741 GCTGTATTTATTGAGCAATGCTACAT 58.634 34.615 8.12 5.77 39.88 2.29
2877 4105 6.238731 GGCTGTATTTATTGAGCAATGCTACA 60.239 38.462 8.12 5.34 39.88 2.74
2878 4106 6.145535 GGCTGTATTTATTGAGCAATGCTAC 58.854 40.000 8.12 0.02 39.88 3.58
2879 4107 5.827267 TGGCTGTATTTATTGAGCAATGCTA 59.173 36.000 8.12 0.00 39.88 3.49
2880 4108 4.646040 TGGCTGTATTTATTGAGCAATGCT 59.354 37.500 7.79 7.79 43.88 3.79
2881 4109 4.935702 TGGCTGTATTTATTGAGCAATGC 58.064 39.130 0.00 0.00 32.83 3.56
2882 4110 6.643770 GGATTGGCTGTATTTATTGAGCAATG 59.356 38.462 5.99 0.00 32.83 2.82
2883 4111 6.324512 TGGATTGGCTGTATTTATTGAGCAAT 59.675 34.615 0.97 0.97 32.83 3.56
2884 4112 5.655974 TGGATTGGCTGTATTTATTGAGCAA 59.344 36.000 0.00 0.00 32.83 3.91
2885 4113 5.199723 TGGATTGGCTGTATTTATTGAGCA 58.800 37.500 0.00 0.00 32.83 4.26
2886 4114 5.772825 TGGATTGGCTGTATTTATTGAGC 57.227 39.130 0.00 0.00 0.00 4.26
2887 4115 6.211515 GCTTGGATTGGCTGTATTTATTGAG 58.788 40.000 0.00 0.00 0.00 3.02
2888 4116 5.221028 CGCTTGGATTGGCTGTATTTATTGA 60.221 40.000 0.00 0.00 0.00 2.57
2889 4117 4.977963 CGCTTGGATTGGCTGTATTTATTG 59.022 41.667 0.00 0.00 0.00 1.90
2890 4118 4.499696 GCGCTTGGATTGGCTGTATTTATT 60.500 41.667 0.00 0.00 0.00 1.40
2891 4119 3.004734 GCGCTTGGATTGGCTGTATTTAT 59.995 43.478 0.00 0.00 0.00 1.40
2892 4120 2.357637 GCGCTTGGATTGGCTGTATTTA 59.642 45.455 0.00 0.00 0.00 1.40
2893 4121 1.134946 GCGCTTGGATTGGCTGTATTT 59.865 47.619 0.00 0.00 0.00 1.40
2894 4122 0.740737 GCGCTTGGATTGGCTGTATT 59.259 50.000 0.00 0.00 0.00 1.89
2895 4123 1.439353 CGCGCTTGGATTGGCTGTAT 61.439 55.000 5.56 0.00 0.00 2.29
2896 4124 2.106074 CGCGCTTGGATTGGCTGTA 61.106 57.895 5.56 0.00 0.00 2.74
2897 4125 3.434319 CGCGCTTGGATTGGCTGT 61.434 61.111 5.56 0.00 0.00 4.40
2898 4126 4.842091 GCGCGCTTGGATTGGCTG 62.842 66.667 26.67 0.00 0.00 4.85
2902 4130 2.051804 CTTAGGGCGCGCTTGGATTG 62.052 60.000 32.72 12.07 0.00 2.67
2903 4131 1.819632 CTTAGGGCGCGCTTGGATT 60.820 57.895 32.72 9.72 0.00 3.01
2904 4132 2.203070 CTTAGGGCGCGCTTGGAT 60.203 61.111 32.72 14.54 0.00 3.41
2914 4142 0.251073 TAGGAAACACGGCTTAGGGC 59.749 55.000 0.00 0.00 40.90 5.19
2915 4143 1.553704 AGTAGGAAACACGGCTTAGGG 59.446 52.381 0.00 0.00 0.00 3.53
2916 4144 3.329929 AAGTAGGAAACACGGCTTAGG 57.670 47.619 0.00 0.00 0.00 2.69
2917 4145 3.367025 CGAAAGTAGGAAACACGGCTTAG 59.633 47.826 0.00 0.00 0.00 2.18
2918 4146 3.319755 CGAAAGTAGGAAACACGGCTTA 58.680 45.455 0.00 0.00 0.00 3.09
2919 4147 2.140717 CGAAAGTAGGAAACACGGCTT 58.859 47.619 0.00 0.00 0.00 4.35
2920 4148 1.792006 CGAAAGTAGGAAACACGGCT 58.208 50.000 0.00 0.00 0.00 5.52
2921 4149 0.165295 GCGAAAGTAGGAAACACGGC 59.835 55.000 0.00 0.00 0.00 5.68
2922 4150 1.725164 GAGCGAAAGTAGGAAACACGG 59.275 52.381 0.00 0.00 0.00 4.94
2923 4151 2.673833 AGAGCGAAAGTAGGAAACACG 58.326 47.619 0.00 0.00 0.00 4.49
2924 4152 4.807443 AGTAGAGCGAAAGTAGGAAACAC 58.193 43.478 0.00 0.00 0.00 3.32
2925 4153 4.765856 AGAGTAGAGCGAAAGTAGGAAACA 59.234 41.667 0.00 0.00 0.00 2.83
2926 4154 5.313520 AGAGTAGAGCGAAAGTAGGAAAC 57.686 43.478 0.00 0.00 0.00 2.78
2927 4155 6.179040 ACTAGAGTAGAGCGAAAGTAGGAAA 58.821 40.000 0.00 0.00 0.00 3.13
2928 4156 5.743117 ACTAGAGTAGAGCGAAAGTAGGAA 58.257 41.667 0.00 0.00 0.00 3.36
2929 4157 5.356291 ACTAGAGTAGAGCGAAAGTAGGA 57.644 43.478 0.00 0.00 0.00 2.94
2930 4158 4.512571 GGACTAGAGTAGAGCGAAAGTAGG 59.487 50.000 0.00 0.00 0.00 3.18
2931 4159 5.117584 TGGACTAGAGTAGAGCGAAAGTAG 58.882 45.833 0.00 0.00 0.00 2.57
2932 4160 5.095145 TGGACTAGAGTAGAGCGAAAGTA 57.905 43.478 0.00 0.00 0.00 2.24
2933 4161 3.942748 CTGGACTAGAGTAGAGCGAAAGT 59.057 47.826 0.00 0.00 0.00 2.66
2934 4162 3.942748 ACTGGACTAGAGTAGAGCGAAAG 59.057 47.826 0.00 0.00 0.00 2.62
2935 4163 3.952931 ACTGGACTAGAGTAGAGCGAAA 58.047 45.455 0.00 0.00 0.00 3.46
2936 4164 3.630892 ACTGGACTAGAGTAGAGCGAA 57.369 47.619 0.00 0.00 0.00 4.70
2937 4165 4.959560 ATACTGGACTAGAGTAGAGCGA 57.040 45.455 0.00 0.00 29.52 4.93
2938 4166 7.042321 GCATATATACTGGACTAGAGTAGAGCG 60.042 44.444 0.00 0.00 29.52 5.03
2939 4167 7.771361 TGCATATATACTGGACTAGAGTAGAGC 59.229 40.741 0.00 0.00 29.52 4.09
2940 4168 9.104965 GTGCATATATACTGGACTAGAGTAGAG 57.895 40.741 0.00 0.00 32.79 2.43
2941 4169 8.827758 AGTGCATATATACTGGACTAGAGTAGA 58.172 37.037 13.63 0.00 42.58 2.59
2942 4170 9.456147 AAGTGCATATATACTGGACTAGAGTAG 57.544 37.037 14.81 0.00 43.43 2.57
2943 4171 9.451002 GAAGTGCATATATACTGGACTAGAGTA 57.549 37.037 14.81 0.00 43.43 2.59
2944 4172 7.945109 TGAAGTGCATATATACTGGACTAGAGT 59.055 37.037 14.81 0.00 43.43 3.24
2945 4173 8.341892 TGAAGTGCATATATACTGGACTAGAG 57.658 38.462 14.81 0.00 43.43 2.43
2946 4174 7.094162 GCTGAAGTGCATATATACTGGACTAGA 60.094 40.741 14.81 7.79 43.43 2.43
2947 4175 7.032580 GCTGAAGTGCATATATACTGGACTAG 58.967 42.308 14.81 12.00 43.43 2.57
2948 4176 6.493458 TGCTGAAGTGCATATATACTGGACTA 59.507 38.462 14.81 5.27 43.43 2.59
2949 4177 5.305386 TGCTGAAGTGCATATATACTGGACT 59.695 40.000 11.06 11.06 45.75 3.85
2950 4178 5.406780 GTGCTGAAGTGCATATATACTGGAC 59.593 44.000 0.00 8.00 45.23 4.02
2951 4179 5.305386 AGTGCTGAAGTGCATATATACTGGA 59.695 40.000 0.00 0.00 45.23 3.86
2952 4180 5.545588 AGTGCTGAAGTGCATATATACTGG 58.454 41.667 0.00 0.00 45.23 4.00
2953 4181 6.565435 GCAAGTGCTGAAGTGCATATATACTG 60.565 42.308 0.00 0.00 45.23 2.74
2954 4182 5.468072 GCAAGTGCTGAAGTGCATATATACT 59.532 40.000 0.00 0.00 45.23 2.12
2955 4183 5.237127 TGCAAGTGCTGAAGTGCATATATAC 59.763 40.000 4.69 0.00 45.23 1.47
2956 4184 5.367302 TGCAAGTGCTGAAGTGCATATATA 58.633 37.500 4.69 0.00 45.23 0.86
2957 4185 4.201657 TGCAAGTGCTGAAGTGCATATAT 58.798 39.130 4.69 0.00 45.23 0.86
2958 4186 3.608796 TGCAAGTGCTGAAGTGCATATA 58.391 40.909 4.69 0.00 45.23 0.86
2959 4187 2.439409 TGCAAGTGCTGAAGTGCATAT 58.561 42.857 4.69 0.00 45.23 1.78
2960 4188 1.894881 TGCAAGTGCTGAAGTGCATA 58.105 45.000 4.69 0.00 45.23 3.14
2961 4189 1.034356 TTGCAAGTGCTGAAGTGCAT 58.966 45.000 4.69 0.00 45.74 3.96
2962 4190 0.816373 TTTGCAAGTGCTGAAGTGCA 59.184 45.000 0.00 0.00 44.85 4.57
2963 4191 1.925229 TTTTGCAAGTGCTGAAGTGC 58.075 45.000 0.00 0.00 42.66 4.40
2981 4209 5.072741 TCTGTTGGCTAGCATCTTCTTTTT 58.927 37.500 18.24 0.00 0.00 1.94
2982 4210 4.655963 TCTGTTGGCTAGCATCTTCTTTT 58.344 39.130 18.24 0.00 0.00 2.27
2983 4211 4.260170 CTCTGTTGGCTAGCATCTTCTTT 58.740 43.478 18.24 0.00 0.00 2.52
2984 4212 3.370315 CCTCTGTTGGCTAGCATCTTCTT 60.370 47.826 18.24 0.00 0.00 2.52
2985 4213 2.170187 CCTCTGTTGGCTAGCATCTTCT 59.830 50.000 18.24 0.00 0.00 2.85
2986 4214 2.559440 CCTCTGTTGGCTAGCATCTTC 58.441 52.381 18.24 0.00 0.00 2.87
2987 4215 1.211457 CCCTCTGTTGGCTAGCATCTT 59.789 52.381 18.24 0.00 0.00 2.40
2988 4216 0.835941 CCCTCTGTTGGCTAGCATCT 59.164 55.000 18.24 0.00 0.00 2.90
2989 4217 0.543749 ACCCTCTGTTGGCTAGCATC 59.456 55.000 18.24 6.57 0.00 3.91
2990 4218 0.543749 GACCCTCTGTTGGCTAGCAT 59.456 55.000 18.24 0.00 0.00 3.79
2991 4219 1.553690 GGACCCTCTGTTGGCTAGCA 61.554 60.000 18.24 0.00 0.00 3.49
2992 4220 1.222113 GGACCCTCTGTTGGCTAGC 59.778 63.158 6.04 6.04 0.00 3.42
2993 4221 0.909610 TGGGACCCTCTGTTGGCTAG 60.910 60.000 13.00 0.00 0.00 3.42
2994 4222 0.909610 CTGGGACCCTCTGTTGGCTA 60.910 60.000 13.00 0.00 0.00 3.93
2995 4223 2.121963 TGGGACCCTCTGTTGGCT 60.122 61.111 13.00 0.00 0.00 4.75
2996 4224 2.190488 CTCTGGGACCCTCTGTTGGC 62.190 65.000 13.00 0.00 0.00 4.52
2997 4225 1.557269 CCTCTGGGACCCTCTGTTGG 61.557 65.000 13.00 1.85 33.58 3.77
2998 4226 0.545309 TCCTCTGGGACCCTCTGTTG 60.545 60.000 13.00 0.00 36.57 3.33
2999 4227 0.193574 TTCCTCTGGGACCCTCTGTT 59.806 55.000 13.00 0.00 42.05 3.16
3000 4228 0.419459 ATTCCTCTGGGACCCTCTGT 59.581 55.000 13.00 0.00 42.05 3.41
3001 4229 1.488393 GAATTCCTCTGGGACCCTCTG 59.512 57.143 13.00 2.17 42.05 3.35
3002 4230 1.367848 AGAATTCCTCTGGGACCCTCT 59.632 52.381 13.00 0.00 42.05 3.69
3003 4231 1.886422 AGAATTCCTCTGGGACCCTC 58.114 55.000 13.00 0.00 42.05 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.