Multiple sequence alignment - TraesCS5A01G245400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G245400 chr5A 100.000 3587 0 0 1 3587 458907876 458911462 0.000000e+00 6625.0
1 TraesCS5A01G245400 chr5A 98.885 269 3 0 1 269 194968633 194968365 6.970000e-132 481.0
2 TraesCS5A01G245400 chr5A 98.881 268 3 0 1 268 458899669 458899936 2.510000e-131 479.0
3 TraesCS5A01G245400 chr5A 97.818 275 6 0 1 275 77928509 77928783 3.240000e-130 475.0
4 TraesCS5A01G245400 chr5A 80.791 354 63 5 1555 1906 458909385 458909735 4.560000e-69 272.0
5 TraesCS5A01G245400 chr5A 80.791 354 63 5 1510 1860 458909430 458909781 4.560000e-69 272.0
6 TraesCS5A01G245400 chr5D 93.973 3335 135 15 269 3587 357897055 357900339 0.000000e+00 4985.0
7 TraesCS5A01G245400 chr5D 83.242 364 48 11 1555 1906 357898251 357898613 4.470000e-84 322.0
8 TraesCS5A01G245400 chr5D 84.848 99 10 5 541 636 505374432 505374336 1.060000e-15 95.3
9 TraesCS5A01G245400 chr5B 93.333 1875 49 19 1731 3587 422939851 422941667 0.000000e+00 2700.0
10 TraesCS5A01G245400 chr5B 93.692 967 34 10 765 1729 422938446 422939387 0.000000e+00 1423.0
11 TraesCS5A01G245400 chr5B 83.410 217 36 0 1555 1771 422939168 422939384 6.070000e-48 202.0
12 TraesCS5A01G245400 chr5B 85.143 175 26 0 1510 1684 422939213 422939387 2.850000e-41 180.0
13 TraesCS5A01G245400 chr5B 91.304 115 9 1 1792 1906 422939879 422939992 4.800000e-34 156.0
14 TraesCS5A01G245400 chr5B 81.250 144 25 2 504 646 9342861 9343003 8.140000e-22 115.0
15 TraesCS5A01G245400 chr7A 98.881 268 3 0 1 268 698945487 698945754 2.510000e-131 479.0
16 TraesCS5A01G245400 chr7A 98.513 269 4 0 1 269 560965833 560966101 3.240000e-130 475.0
17 TraesCS5A01G245400 chr7A 85.437 103 12 3 550 650 549726178 549726077 1.760000e-18 104.0
18 TraesCS5A01G245400 chr7A 80.000 100 19 1 548 646 617595418 617595517 4.970000e-09 73.1
19 TraesCS5A01G245400 chr7A 88.235 51 5 1 521 570 166762890 166762840 3.870000e-05 60.2
20 TraesCS5A01G245400 chr2A 98.513 269 4 0 1 269 427263820 427264088 3.240000e-130 475.0
21 TraesCS5A01G245400 chr1A 97.464 276 7 0 1 276 374660477 374660752 4.190000e-129 472.0
22 TraesCS5A01G245400 chr1A 98.141 269 5 0 1 269 124264464 124264732 1.510000e-128 470.0
23 TraesCS5A01G245400 chr1A 88.889 45 5 0 278 322 509018295 509018251 5.000000e-04 56.5
24 TraesCS5A01G245400 chr4A 96.466 283 10 0 1 283 320065374 320065092 5.420000e-128 468.0
25 TraesCS5A01G245400 chr4A 81.967 122 21 1 527 647 597685042 597684921 6.340000e-18 102.0
26 TraesCS5A01G245400 chr7B 88.235 85 10 0 654 738 214010361 214010277 6.340000e-18 102.0
27 TraesCS5A01G245400 chr7B 85.000 80 11 1 659 738 748590140 748590062 2.970000e-11 80.5
28 TraesCS5A01G245400 chr7B 83.529 85 13 1 654 738 383602750 383602667 1.070000e-10 78.7
29 TraesCS5A01G245400 chr6B 87.952 83 9 1 559 640 603796062 603796144 2.950000e-16 97.1
30 TraesCS5A01G245400 chr3D 86.517 89 11 1 650 738 532181697 532181784 2.950000e-16 97.1
31 TraesCS5A01G245400 chr2B 86.207 87 11 1 555 640 547919305 547919219 3.810000e-15 93.5
32 TraesCS5A01G245400 chr4B 85.393 89 12 1 650 738 82506739 82506826 1.370000e-14 91.6
33 TraesCS5A01G245400 chr2D 85.393 89 12 1 650 738 191049565 191049478 1.370000e-14 91.6
34 TraesCS5A01G245400 chr1B 80.672 119 21 2 530 647 427524828 427524945 1.370000e-14 91.6
35 TraesCS5A01G245400 chrUn 83.146 89 14 1 650 738 47685635 47685722 2.970000e-11 80.5
36 TraesCS5A01G245400 chr3A 76.552 145 33 1 503 647 610518405 610518262 1.070000e-10 78.7
37 TraesCS5A01G245400 chr7D 82.022 89 15 1 650 738 241171123 241171036 1.380000e-09 75.0
38 TraesCS5A01G245400 chr7D 85.000 60 9 0 278 337 366667760 366667701 1.080000e-05 62.1
39 TraesCS5A01G245400 chr7D 82.192 73 9 2 278 348 450271162 450271232 3.870000e-05 60.2
40 TraesCS5A01G245400 chr1D 77.686 121 24 3 270 389 411780357 411780239 1.790000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G245400 chr5A 458907876 458911462 3586 False 2389.666667 6625 87.1940 1 3587 3 chr5A.!!$F3 3586
1 TraesCS5A01G245400 chr5D 357897055 357900339 3284 False 2653.500000 4985 88.6075 269 3587 2 chr5D.!!$F1 3318
2 TraesCS5A01G245400 chr5B 422938446 422941667 3221 False 932.200000 2700 89.3764 765 3587 5 chr5B.!!$F2 2822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.031721 GTTACCATCCGGCCTAGACG 59.968 60.0 0.00 0.00 34.57 4.18 F
1410 1415 0.037605 CCAACGCCGGACTTAAGTCT 60.038 55.0 29.66 11.38 44.20 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2424 0.388134 AATGTCCAGAACGTCGACGG 60.388 55.0 37.89 21.82 44.95 4.79 R
3388 3869 0.400213 CCCAGGTACAGTTCAGCCAA 59.600 55.0 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.573941 CGGAGGGTTTTAGTCCGTAG 57.426 55.000 1.80 0.00 46.66 3.51
38 39 5.450376 CGTAGGACAACATACACATCAAC 57.550 43.478 0.00 0.00 33.60 3.18
39 40 4.926832 CGTAGGACAACATACACATCAACA 59.073 41.667 0.00 0.00 33.60 3.33
40 41 5.407084 CGTAGGACAACATACACATCAACAA 59.593 40.000 0.00 0.00 33.60 2.83
41 42 6.092122 CGTAGGACAACATACACATCAACAAT 59.908 38.462 0.00 0.00 33.60 2.71
42 43 6.500684 AGGACAACATACACATCAACAATC 57.499 37.500 0.00 0.00 0.00 2.67
43 44 6.003326 AGGACAACATACACATCAACAATCA 58.997 36.000 0.00 0.00 0.00 2.57
44 45 6.660521 AGGACAACATACACATCAACAATCAT 59.339 34.615 0.00 0.00 0.00 2.45
45 46 7.828717 AGGACAACATACACATCAACAATCATA 59.171 33.333 0.00 0.00 0.00 2.15
46 47 7.910162 GGACAACATACACATCAACAATCATAC 59.090 37.037 0.00 0.00 0.00 2.39
47 48 7.761409 ACAACATACACATCAACAATCATACC 58.239 34.615 0.00 0.00 0.00 2.73
48 49 7.392953 ACAACATACACATCAACAATCATACCA 59.607 33.333 0.00 0.00 0.00 3.25
49 50 8.407832 CAACATACACATCAACAATCATACCAT 58.592 33.333 0.00 0.00 0.00 3.55
50 51 9.625747 AACATACACATCAACAATCATACCATA 57.374 29.630 0.00 0.00 0.00 2.74
51 52 9.276590 ACATACACATCAACAATCATACCATAG 57.723 33.333 0.00 0.00 0.00 2.23
52 53 8.724229 CATACACATCAACAATCATACCATAGG 58.276 37.037 0.00 0.00 0.00 2.57
53 54 5.532406 ACACATCAACAATCATACCATAGGC 59.468 40.000 0.00 0.00 0.00 3.93
54 55 5.766670 CACATCAACAATCATACCATAGGCT 59.233 40.000 0.00 0.00 0.00 4.58
55 56 6.936335 CACATCAACAATCATACCATAGGCTA 59.064 38.462 0.00 0.00 0.00 3.93
56 57 7.118825 CACATCAACAATCATACCATAGGCTAG 59.881 40.741 0.00 0.00 0.00 3.42
57 58 5.551233 TCAACAATCATACCATAGGCTAGC 58.449 41.667 6.04 6.04 0.00 3.42
58 59 5.307976 TCAACAATCATACCATAGGCTAGCT 59.692 40.000 15.72 3.22 0.00 3.32
59 60 5.832539 ACAATCATACCATAGGCTAGCTT 57.167 39.130 15.72 10.11 0.00 3.74
60 61 5.799213 ACAATCATACCATAGGCTAGCTTC 58.201 41.667 15.72 0.00 0.00 3.86
61 62 5.545723 ACAATCATACCATAGGCTAGCTTCT 59.454 40.000 15.72 6.71 0.00 2.85
62 63 6.726299 ACAATCATACCATAGGCTAGCTTCTA 59.274 38.462 15.72 8.91 0.00 2.10
63 64 7.093552 ACAATCATACCATAGGCTAGCTTCTAG 60.094 40.741 15.72 3.93 0.00 2.43
64 65 5.265191 TCATACCATAGGCTAGCTTCTAGG 58.735 45.833 15.72 12.08 0.00 3.02
65 66 2.896039 ACCATAGGCTAGCTTCTAGGG 58.104 52.381 22.47 22.47 41.57 3.53
66 67 2.180308 ACCATAGGCTAGCTTCTAGGGT 59.820 50.000 23.48 23.48 43.27 4.34
67 68 3.243724 CCATAGGCTAGCTTCTAGGGTT 58.756 50.000 18.28 0.00 34.00 4.11
68 69 3.648545 CCATAGGCTAGCTTCTAGGGTTT 59.351 47.826 18.28 0.00 34.00 3.27
69 70 4.838986 CCATAGGCTAGCTTCTAGGGTTTA 59.161 45.833 18.28 0.00 34.00 2.01
70 71 5.046950 CCATAGGCTAGCTTCTAGGGTTTAG 60.047 48.000 18.28 0.00 34.00 1.85
71 72 2.701423 AGGCTAGCTTCTAGGGTTTAGC 59.299 50.000 15.72 0.00 34.32 3.09
72 73 2.224329 GGCTAGCTTCTAGGGTTTAGCC 60.224 54.545 15.72 15.56 44.26 3.93
73 74 2.701423 GCTAGCTTCTAGGGTTTAGCCT 59.299 50.000 7.70 5.72 37.43 4.58
74 75 3.243941 GCTAGCTTCTAGGGTTTAGCCTC 60.244 52.174 7.70 0.00 37.43 4.70
75 76 2.120312 AGCTTCTAGGGTTTAGCCTCC 58.880 52.381 3.32 0.00 37.43 4.30
76 77 2.120312 GCTTCTAGGGTTTAGCCTCCT 58.880 52.381 3.32 0.00 37.43 3.69
77 78 2.103432 GCTTCTAGGGTTTAGCCTCCTC 59.897 54.545 3.32 0.00 37.43 3.71
78 79 2.068834 TCTAGGGTTTAGCCTCCTCG 57.931 55.000 3.32 0.00 37.43 4.63
79 80 1.567649 TCTAGGGTTTAGCCTCCTCGA 59.432 52.381 3.32 0.00 37.43 4.04
80 81 2.177233 TCTAGGGTTTAGCCTCCTCGAT 59.823 50.000 3.32 0.00 37.43 3.59
81 82 1.415200 AGGGTTTAGCCTCCTCGATC 58.585 55.000 0.00 0.00 37.43 3.69
82 83 1.062810 AGGGTTTAGCCTCCTCGATCT 60.063 52.381 0.00 0.00 37.43 2.75
83 84 1.341852 GGGTTTAGCCTCCTCGATCTC 59.658 57.143 0.00 0.00 37.43 2.75
84 85 1.001158 GGTTTAGCCTCCTCGATCTCG 60.001 57.143 0.00 0.00 41.45 4.04
85 86 1.677052 GTTTAGCCTCCTCGATCTCGT 59.323 52.381 0.00 0.00 40.80 4.18
86 87 1.309950 TTAGCCTCCTCGATCTCGTG 58.690 55.000 0.00 0.00 40.80 4.35
94 95 2.369203 TCCTCGATCTCGTGGTAGATCT 59.631 50.000 17.35 0.00 46.50 2.75
95 96 3.577415 TCCTCGATCTCGTGGTAGATCTA 59.423 47.826 17.35 0.00 46.50 1.98
96 97 3.680937 CCTCGATCTCGTGGTAGATCTAC 59.319 52.174 22.47 22.47 46.50 2.59
97 98 4.561938 CCTCGATCTCGTGGTAGATCTACT 60.562 50.000 27.68 10.07 46.50 2.57
98 99 4.558178 TCGATCTCGTGGTAGATCTACTC 58.442 47.826 27.68 19.35 46.50 2.59
99 100 4.281435 TCGATCTCGTGGTAGATCTACTCT 59.719 45.833 27.68 9.36 46.50 3.24
100 101 4.992319 CGATCTCGTGGTAGATCTACTCTT 59.008 45.833 27.68 9.80 46.50 2.85
101 102 5.119588 CGATCTCGTGGTAGATCTACTCTTC 59.880 48.000 27.68 14.49 46.50 2.87
102 103 5.617528 TCTCGTGGTAGATCTACTCTTCT 57.382 43.478 27.68 0.00 36.36 2.85
103 104 6.728089 TCTCGTGGTAGATCTACTCTTCTA 57.272 41.667 27.68 10.89 36.36 2.10
104 105 6.514947 TCTCGTGGTAGATCTACTCTTCTAC 58.485 44.000 27.68 16.82 42.27 2.59
105 106 6.324512 TCTCGTGGTAGATCTACTCTTCTACT 59.675 42.308 27.68 0.00 42.50 2.57
106 107 7.505248 TCTCGTGGTAGATCTACTCTTCTACTA 59.495 40.741 27.68 11.50 42.50 1.82
107 108 7.432869 TCGTGGTAGATCTACTCTTCTACTAC 58.567 42.308 27.68 12.31 45.76 2.73
108 109 6.646240 CGTGGTAGATCTACTCTTCTACTACC 59.354 46.154 27.68 13.13 46.14 3.18
109 110 6.936335 GTGGTAGATCTACTCTTCTACTACCC 59.064 46.154 27.68 10.66 44.59 3.69
110 111 6.618610 TGGTAGATCTACTCTTCTACTACCCA 59.381 42.308 27.68 12.88 44.14 4.51
111 112 7.295196 TGGTAGATCTACTCTTCTACTACCCAT 59.705 40.741 27.68 0.00 44.14 4.00
112 113 8.824783 GGTAGATCTACTCTTCTACTACCCATA 58.175 40.741 27.68 0.00 42.50 2.74
115 116 9.118367 AGATCTACTCTTCTACTACCCATATCA 57.882 37.037 0.00 0.00 0.00 2.15
116 117 9.914834 GATCTACTCTTCTACTACCCATATCAT 57.085 37.037 0.00 0.00 0.00 2.45
117 118 9.914834 ATCTACTCTTCTACTACCCATATCATC 57.085 37.037 0.00 0.00 0.00 2.92
118 119 8.891501 TCTACTCTTCTACTACCCATATCATCA 58.108 37.037 0.00 0.00 0.00 3.07
119 120 9.521841 CTACTCTTCTACTACCCATATCATCAA 57.478 37.037 0.00 0.00 0.00 2.57
120 121 8.964533 ACTCTTCTACTACCCATATCATCAAT 57.035 34.615 0.00 0.00 0.00 2.57
132 133 9.758021 ACCCATATCATCAATATTAATCAAGCA 57.242 29.630 0.00 0.00 0.00 3.91
137 138 7.425577 TCATCAATATTAATCAAGCAGGACG 57.574 36.000 0.00 0.00 0.00 4.79
138 139 6.992123 TCATCAATATTAATCAAGCAGGACGT 59.008 34.615 0.00 0.00 0.00 4.34
139 140 8.147704 TCATCAATATTAATCAAGCAGGACGTA 58.852 33.333 0.00 0.00 0.00 3.57
140 141 7.946655 TCAATATTAATCAAGCAGGACGTAG 57.053 36.000 0.00 0.00 0.00 3.51
141 142 6.929049 TCAATATTAATCAAGCAGGACGTAGG 59.071 38.462 0.00 0.00 0.00 3.18
142 143 3.536956 TTAATCAAGCAGGACGTAGGG 57.463 47.619 0.00 0.00 0.00 3.53
143 144 1.276622 AATCAAGCAGGACGTAGGGT 58.723 50.000 0.00 0.00 0.00 4.34
144 145 1.276622 ATCAAGCAGGACGTAGGGTT 58.723 50.000 0.00 0.00 0.00 4.11
145 146 1.053424 TCAAGCAGGACGTAGGGTTT 58.947 50.000 0.00 0.00 0.00 3.27
146 147 1.418637 TCAAGCAGGACGTAGGGTTTT 59.581 47.619 0.00 0.00 0.00 2.43
147 148 2.633967 TCAAGCAGGACGTAGGGTTTTA 59.366 45.455 0.00 0.00 0.00 1.52
148 149 2.740447 CAAGCAGGACGTAGGGTTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
149 150 1.277273 AGCAGGACGTAGGGTTTTACC 59.723 52.381 0.00 0.00 37.60 2.85
150 151 1.277273 GCAGGACGTAGGGTTTTACCT 59.723 52.381 0.00 0.00 44.75 3.08
151 152 2.676176 GCAGGACGTAGGGTTTTACCTC 60.676 54.545 0.00 0.00 42.09 3.85
152 153 2.093816 CAGGACGTAGGGTTTTACCTCC 60.094 54.545 0.00 0.00 42.09 4.30
153 154 1.901833 GGACGTAGGGTTTTACCTCCA 59.098 52.381 0.00 0.00 42.09 3.86
154 155 2.502947 GGACGTAGGGTTTTACCTCCAT 59.497 50.000 0.00 0.00 42.09 3.41
155 156 3.431346 GGACGTAGGGTTTTACCTCCATC 60.431 52.174 0.00 0.00 42.09 3.51
156 157 2.167075 ACGTAGGGTTTTACCTCCATCG 59.833 50.000 0.00 0.00 42.09 3.84
157 158 2.428171 CGTAGGGTTTTACCTCCATCGA 59.572 50.000 0.00 0.00 42.09 3.59
158 159 3.490419 CGTAGGGTTTTACCTCCATCGAG 60.490 52.174 0.00 0.00 42.09 4.04
159 160 2.829023 AGGGTTTTACCTCCATCGAGA 58.171 47.619 0.00 0.00 38.52 4.04
160 161 2.766828 AGGGTTTTACCTCCATCGAGAG 59.233 50.000 0.00 0.00 38.52 3.20
166 167 3.610669 CTCCATCGAGAGGGCCCG 61.611 72.222 18.44 4.06 38.52 6.13
167 168 4.137615 TCCATCGAGAGGGCCCGA 62.138 66.667 18.44 10.63 39.25 5.14
168 169 3.154473 CCATCGAGAGGGCCCGAA 61.154 66.667 18.44 1.01 38.36 4.30
169 170 2.107141 CATCGAGAGGGCCCGAAC 59.893 66.667 18.44 12.45 38.36 3.95
170 171 3.155167 ATCGAGAGGGCCCGAACC 61.155 66.667 18.44 7.31 38.36 3.62
171 172 3.680920 ATCGAGAGGGCCCGAACCT 62.681 63.158 18.44 12.55 42.18 3.50
172 173 4.148825 CGAGAGGGCCCGAACCTG 62.149 72.222 18.44 1.23 38.79 4.00
173 174 3.787001 GAGAGGGCCCGAACCTGG 61.787 72.222 18.44 0.00 38.79 4.45
182 183 2.281539 CCCGAACCTGGGTAAAACTT 57.718 50.000 0.00 0.00 44.76 2.66
183 184 2.156917 CCCGAACCTGGGTAAAACTTC 58.843 52.381 0.00 0.00 44.76 3.01
184 185 1.802365 CCGAACCTGGGTAAAACTTCG 59.198 52.381 0.00 2.50 0.00 3.79
185 186 2.486918 CGAACCTGGGTAAAACTTCGT 58.513 47.619 0.00 0.00 0.00 3.85
186 187 2.222445 CGAACCTGGGTAAAACTTCGTG 59.778 50.000 0.00 0.00 0.00 4.35
187 188 3.208594 GAACCTGGGTAAAACTTCGTGT 58.791 45.455 0.00 0.00 0.00 4.49
188 189 2.842457 ACCTGGGTAAAACTTCGTGTC 58.158 47.619 0.00 0.00 0.00 3.67
189 190 2.148768 CCTGGGTAAAACTTCGTGTCC 58.851 52.381 0.00 0.00 0.00 4.02
190 191 2.148768 CTGGGTAAAACTTCGTGTCCC 58.851 52.381 0.00 0.00 0.00 4.46
191 192 1.770061 TGGGTAAAACTTCGTGTCCCT 59.230 47.619 0.00 0.00 35.00 4.20
192 193 2.173143 TGGGTAAAACTTCGTGTCCCTT 59.827 45.455 0.00 0.00 35.00 3.95
193 194 2.551032 GGGTAAAACTTCGTGTCCCTTG 59.449 50.000 0.00 0.00 0.00 3.61
194 195 3.208594 GGTAAAACTTCGTGTCCCTTGT 58.791 45.455 0.00 0.00 0.00 3.16
195 196 3.249320 GGTAAAACTTCGTGTCCCTTGTC 59.751 47.826 0.00 0.00 0.00 3.18
196 197 3.277142 AAAACTTCGTGTCCCTTGTCT 57.723 42.857 0.00 0.00 0.00 3.41
197 198 2.528041 AACTTCGTGTCCCTTGTCTC 57.472 50.000 0.00 0.00 0.00 3.36
198 199 0.680061 ACTTCGTGTCCCTTGTCTCC 59.320 55.000 0.00 0.00 0.00 3.71
199 200 0.969894 CTTCGTGTCCCTTGTCTCCT 59.030 55.000 0.00 0.00 0.00 3.69
200 201 0.679505 TTCGTGTCCCTTGTCTCCTG 59.320 55.000 0.00 0.00 0.00 3.86
201 202 0.469331 TCGTGTCCCTTGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
202 203 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
203 204 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
204 205 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
205 206 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
206 207 1.975680 GTCCCTTGTCTCCTGTTACCA 59.024 52.381 0.00 0.00 0.00 3.25
207 208 2.572104 GTCCCTTGTCTCCTGTTACCAT 59.428 50.000 0.00 0.00 0.00 3.55
208 209 2.838202 TCCCTTGTCTCCTGTTACCATC 59.162 50.000 0.00 0.00 0.00 3.51
209 210 2.092914 CCCTTGTCTCCTGTTACCATCC 60.093 54.545 0.00 0.00 0.00 3.51
210 211 2.418746 CCTTGTCTCCTGTTACCATCCG 60.419 54.545 0.00 0.00 0.00 4.18
211 212 1.191535 TGTCTCCTGTTACCATCCGG 58.808 55.000 0.00 0.00 38.77 5.14
212 213 0.179081 GTCTCCTGTTACCATCCGGC 60.179 60.000 0.00 0.00 34.57 6.13
213 214 1.146263 CTCCTGTTACCATCCGGCC 59.854 63.158 0.00 0.00 34.57 6.13
214 215 1.306654 TCCTGTTACCATCCGGCCT 60.307 57.895 0.00 0.00 34.57 5.19
215 216 0.031917 TCCTGTTACCATCCGGCCTA 60.032 55.000 0.00 0.00 34.57 3.93
216 217 0.393077 CCTGTTACCATCCGGCCTAG 59.607 60.000 0.00 0.00 34.57 3.02
217 218 1.410004 CTGTTACCATCCGGCCTAGA 58.590 55.000 0.00 0.00 34.57 2.43
218 219 1.068741 CTGTTACCATCCGGCCTAGAC 59.931 57.143 0.00 0.00 34.57 2.59
219 220 0.031721 GTTACCATCCGGCCTAGACG 59.968 60.000 0.00 0.00 34.57 4.18
220 221 1.741327 TTACCATCCGGCCTAGACGC 61.741 60.000 0.00 0.00 34.57 5.19
221 222 2.914756 TACCATCCGGCCTAGACGCA 62.915 60.000 0.00 0.00 34.57 5.24
222 223 2.279517 CATCCGGCCTAGACGCAC 60.280 66.667 0.00 0.00 29.68 5.34
223 224 2.758327 ATCCGGCCTAGACGCACA 60.758 61.111 0.00 0.00 29.68 4.57
224 225 2.786495 ATCCGGCCTAGACGCACAG 61.786 63.158 0.00 0.00 29.68 3.66
225 226 3.760035 CCGGCCTAGACGCACAGT 61.760 66.667 0.00 0.00 29.68 3.55
226 227 2.261671 CGGCCTAGACGCACAGTT 59.738 61.111 0.00 0.00 0.00 3.16
227 228 1.805945 CGGCCTAGACGCACAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
228 229 1.805945 GGCCTAGACGCACAGTTCG 60.806 63.158 0.00 0.00 0.00 3.95
229 230 1.805945 GCCTAGACGCACAGTTCGG 60.806 63.158 0.00 0.00 0.00 4.30
230 231 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
231 232 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
232 233 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
233 234 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
234 235 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
236 237 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
237 238 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
238 239 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
239 240 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
240 241 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
241 242 2.040114 GTTCGGGACCCCCTACCT 59.960 66.667 4.46 0.00 42.67 3.08
242 243 2.039951 TTCGGGACCCCCTACCTG 59.960 66.667 4.46 0.00 42.67 4.00
243 244 2.560083 TTCGGGACCCCCTACCTGA 61.560 63.158 4.46 0.00 42.67 3.86
244 245 2.444140 CGGGACCCCCTACCTGAG 60.444 72.222 4.46 0.00 42.67 3.35
245 246 3.005148 CGGGACCCCCTACCTGAGA 62.005 68.421 4.46 0.00 42.67 3.27
246 247 1.632740 GGGACCCCCTACCTGAGAT 59.367 63.158 0.00 0.00 41.34 2.75
247 248 0.472161 GGGACCCCCTACCTGAGATC 60.472 65.000 0.00 0.00 41.34 2.75
248 249 0.472161 GGACCCCCTACCTGAGATCC 60.472 65.000 0.00 0.00 0.00 3.36
249 250 0.828343 GACCCCCTACCTGAGATCCG 60.828 65.000 0.00 0.00 0.00 4.18
250 251 2.210711 CCCCCTACCTGAGATCCGC 61.211 68.421 0.00 0.00 0.00 5.54
251 252 2.210711 CCCCTACCTGAGATCCGCC 61.211 68.421 0.00 0.00 0.00 6.13
252 253 2.565645 CCCTACCTGAGATCCGCCG 61.566 68.421 0.00 0.00 0.00 6.46
253 254 2.565645 CCTACCTGAGATCCGCCGG 61.566 68.421 0.00 0.00 0.00 6.13
254 255 1.828660 CTACCTGAGATCCGCCGGT 60.829 63.158 1.63 4.98 0.00 5.28
255 256 1.380785 TACCTGAGATCCGCCGGTT 60.381 57.895 1.63 0.00 0.00 4.44
256 257 0.974010 TACCTGAGATCCGCCGGTTT 60.974 55.000 1.63 0.00 0.00 3.27
257 258 1.078426 CCTGAGATCCGCCGGTTTT 60.078 57.895 1.63 0.00 0.00 2.43
258 259 1.369091 CCTGAGATCCGCCGGTTTTG 61.369 60.000 1.63 0.00 0.00 2.44
259 260 0.391130 CTGAGATCCGCCGGTTTTGA 60.391 55.000 1.63 0.00 0.00 2.69
260 261 0.672401 TGAGATCCGCCGGTTTTGAC 60.672 55.000 1.63 0.00 0.00 3.18
261 262 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
262 263 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
263 264 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
264 265 2.684192 ATCCGCCGGTTTTGACACCA 62.684 55.000 1.63 0.00 36.49 4.17
265 266 2.482333 CCGCCGGTTTTGACACCAA 61.482 57.895 1.90 0.00 36.49 3.67
266 267 1.298788 CGCCGGTTTTGACACCAAC 60.299 57.895 1.90 0.00 36.49 3.77
267 268 1.810532 GCCGGTTTTGACACCAACA 59.189 52.632 1.90 0.00 36.49 3.33
274 275 3.748568 GGTTTTGACACCAACAAAAAGCA 59.251 39.130 0.00 0.00 44.77 3.91
351 352 5.874895 AAGGGTTTGTAATTTAGACTCGC 57.125 39.130 0.00 0.00 0.00 5.03
353 354 3.063045 GGGTTTGTAATTTAGACTCGCGG 59.937 47.826 6.13 0.00 0.00 6.46
356 357 5.334337 GGTTTGTAATTTAGACTCGCGGTTT 60.334 40.000 6.13 0.72 0.00 3.27
403 404 6.939163 AGACAAATCTAGAAAAGAGCACACAT 59.061 34.615 0.00 0.00 37.74 3.21
405 406 6.072286 ACAAATCTAGAAAAGAGCACACATGG 60.072 38.462 0.00 0.00 37.74 3.66
413 414 2.806434 AGAGCACACATGGCCAATTTA 58.194 42.857 10.96 0.00 0.00 1.40
423 424 3.464720 TGGCCAATTTAACATCCCTCA 57.535 42.857 0.61 0.00 0.00 3.86
444 445 2.061773 CGCGTGAATGTGAAACTCTCT 58.938 47.619 0.00 0.00 38.04 3.10
445 446 3.242518 CGCGTGAATGTGAAACTCTCTA 58.757 45.455 0.00 0.00 38.04 2.43
473 474 0.892755 CAAGTGATGCCCATGTGCTT 59.107 50.000 0.86 0.00 0.00 3.91
492 493 6.015603 TGTGCTTCATCATTTGTAATCACCAA 60.016 34.615 0.00 0.00 0.00 3.67
515 516 7.826260 AAAGTATTTGTGAACCAACTTGTTG 57.174 32.000 6.52 6.52 36.60 3.33
516 517 6.524101 AGTATTTGTGAACCAACTTGTTGT 57.476 33.333 11.82 0.00 31.20 3.32
517 518 6.930731 AGTATTTGTGAACCAACTTGTTGTT 58.069 32.000 11.82 6.82 39.92 2.83
518 519 8.057536 AGTATTTGTGAACCAACTTGTTGTTA 57.942 30.769 11.82 0.00 37.07 2.41
519 520 8.188139 AGTATTTGTGAACCAACTTGTTGTTAG 58.812 33.333 11.82 0.80 37.07 2.34
520 521 4.974368 TGTGAACCAACTTGTTGTTAGG 57.026 40.909 11.82 0.32 37.07 2.69
528 529 4.277423 CCAACTTGTTGTTAGGTGGTTAGG 59.723 45.833 11.82 0.00 43.99 2.69
533 534 4.172807 TGTTGTTAGGTGGTTAGGAGGAT 58.827 43.478 0.00 0.00 0.00 3.24
556 557 4.614475 AGTGGTATCTTCAGTCCATCAGA 58.386 43.478 0.00 0.00 32.45 3.27
560 561 5.485353 TGGTATCTTCAGTCCATCAGAGTTT 59.515 40.000 0.00 0.00 0.00 2.66
565 566 7.067496 TCTTCAGTCCATCAGAGTTTAAGTT 57.933 36.000 0.00 0.00 0.00 2.66
569 570 8.190326 TCAGTCCATCAGAGTTTAAGTTCTAA 57.810 34.615 0.00 0.00 0.00 2.10
589 590 1.812235 ACTTGACATTGATGCTCGCA 58.188 45.000 0.00 0.00 0.00 5.10
597 598 5.123661 TGACATTGATGCTCGCATTTTTCTA 59.876 36.000 5.79 0.00 36.70 2.10
598 599 5.575957 ACATTGATGCTCGCATTTTTCTAG 58.424 37.500 5.79 0.00 36.70 2.43
618 619 4.510038 AGATTTATTTCATGCCATCCGC 57.490 40.909 0.00 0.00 38.31 5.54
619 620 4.147321 AGATTTATTTCATGCCATCCGCT 58.853 39.130 0.00 0.00 38.78 5.52
647 649 0.761323 TCAGTGGGGGAAGACGTTCA 60.761 55.000 0.00 0.00 33.93 3.18
648 650 0.602905 CAGTGGGGGAAGACGTTCAC 60.603 60.000 0.00 0.00 35.05 3.18
649 651 1.666872 GTGGGGGAAGACGTTCACG 60.667 63.158 0.00 0.00 46.33 4.35
650 652 1.833492 TGGGGGAAGACGTTCACGA 60.833 57.895 6.30 0.00 43.02 4.35
651 653 1.080025 GGGGGAAGACGTTCACGAG 60.080 63.158 6.30 0.00 43.02 4.18
652 654 1.530013 GGGGGAAGACGTTCACGAGA 61.530 60.000 6.30 0.00 43.02 4.04
653 655 0.316204 GGGGAAGACGTTCACGAGAA 59.684 55.000 6.30 0.00 43.02 2.87
654 656 1.669211 GGGGAAGACGTTCACGAGAAG 60.669 57.143 6.30 0.00 43.02 2.85
655 657 1.268899 GGGAAGACGTTCACGAGAAGA 59.731 52.381 6.30 0.00 43.02 2.87
656 658 2.317684 GGAAGACGTTCACGAGAAGAC 58.682 52.381 6.30 0.00 43.02 3.01
657 659 2.287427 GGAAGACGTTCACGAGAAGACA 60.287 50.000 6.30 0.00 43.02 3.41
658 660 3.566523 GAAGACGTTCACGAGAAGACAT 58.433 45.455 6.30 0.00 43.02 3.06
659 661 3.644884 AGACGTTCACGAGAAGACATT 57.355 42.857 6.30 0.00 43.02 2.71
660 662 3.566523 AGACGTTCACGAGAAGACATTC 58.433 45.455 6.30 0.00 43.02 2.67
686 688 6.388435 GTTGACTACGAAGGTATCTATGGT 57.612 41.667 0.00 0.00 0.00 3.55
692 694 5.934402 ACGAAGGTATCTATGGTGACTTT 57.066 39.130 0.00 0.00 0.00 2.66
695 697 8.019656 ACGAAGGTATCTATGGTGACTTTATT 57.980 34.615 0.00 0.00 0.00 1.40
723 725 3.932545 AGATGATATGCCGACTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
727 729 4.471904 TGATATGCCGACTCAGTCTTTT 57.528 40.909 2.61 0.00 0.00 2.27
735 737 2.221981 CGACTCAGTCTTTTGGAAGTGC 59.778 50.000 2.61 0.00 34.41 4.40
737 739 3.471680 ACTCAGTCTTTTGGAAGTGCTC 58.528 45.455 0.00 0.00 34.41 4.26
740 742 2.031333 CAGTCTTTTGGAAGTGCTCTGC 60.031 50.000 0.00 0.00 34.41 4.26
766 768 4.398549 GCGTATGCTCTTGTGTGTTAAA 57.601 40.909 0.00 0.00 38.39 1.52
767 769 4.778904 GCGTATGCTCTTGTGTGTTAAAA 58.221 39.130 0.00 0.00 38.39 1.52
911 914 2.429058 CCAGCTGATCCATCCCCG 59.571 66.667 17.39 0.00 0.00 5.73
1224 1229 4.944372 CAGCCCGATCCGTACGCC 62.944 72.222 10.49 0.00 0.00 5.68
1410 1415 0.037605 CCAACGCCGGACTTAAGTCT 60.038 55.000 29.66 11.38 44.20 3.24
1429 1434 4.493747 CCCTCGACGCCGAACTCC 62.494 72.222 0.00 0.00 45.04 3.85
1462 1467 4.821589 CTCGCGCTTCCCACCCTC 62.822 72.222 5.56 0.00 0.00 4.30
1530 1535 4.106925 CCTCCACAGCAGAGCCCC 62.107 72.222 0.00 0.00 0.00 5.80
1749 2216 4.007644 CAGCCGTCTCCACAGCCA 62.008 66.667 0.00 0.00 0.00 4.75
1842 2321 2.281761 CCAAGTCCGCTGCAACCT 60.282 61.111 0.00 0.00 0.00 3.50
2055 2534 0.108186 GCCACCAGCCATTTTTAGCC 60.108 55.000 0.00 0.00 34.35 3.93
2190 2669 4.729918 CAGCCACAGGGGTCAGGC 62.730 72.222 0.00 0.00 44.97 4.85
2276 2755 1.639635 ATAGGTGCTGCAAGGGAGGG 61.640 60.000 2.77 0.00 0.00 4.30
2310 2789 1.170290 AACCTTCGCCGGAACCTTTG 61.170 55.000 5.05 0.00 0.00 2.77
2320 2799 1.154225 GAACCTTTGATGCGCACGG 60.154 57.895 14.90 11.14 0.00 4.94
2567 3046 2.502295 AGGCAGCAAGAACAAGAAGAG 58.498 47.619 0.00 0.00 0.00 2.85
2666 3145 7.415206 GGCTATTAATTTCATCCTGTTGTCGTT 60.415 37.037 0.00 0.00 0.00 3.85
2818 3297 2.209273 TGATGAGTTGTGTGACCGTTG 58.791 47.619 0.00 0.00 0.00 4.10
2947 3426 7.860373 TGTTAACTGAGCAATGTACATTCAAAC 59.140 33.333 18.25 14.09 0.00 2.93
2998 3477 6.861065 TGTTATGTGTTTCTTCTCCAGTTC 57.139 37.500 0.00 0.00 0.00 3.01
3082 3561 1.847506 ATGGTGTGCCTGGTGAGGA 60.848 57.895 0.00 0.00 42.93 3.71
3172 3651 5.769662 AGGTCAAATGAGCAAGTTATGTGAA 59.230 36.000 14.36 0.00 44.42 3.18
3326 3806 5.767168 AGGACTCTGAAAAGAGAATTGTTGG 59.233 40.000 9.65 0.00 39.14 3.77
3388 3869 4.437682 TTGTCTCTGAACTGAATTGGGT 57.562 40.909 0.00 0.00 0.00 4.51
3470 3951 2.869101 AAGAGGACCCTGAAAAGAGC 57.131 50.000 0.00 0.00 0.00 4.09
3472 3953 1.349357 AGAGGACCCTGAAAAGAGCAC 59.651 52.381 0.00 0.00 0.00 4.40
3483 3964 3.444742 TGAAAAGAGCACCATTGGCTATG 59.555 43.478 1.54 1.70 42.78 2.23
3502 3987 6.204688 GGCTATGTTATGGTGAATTCGAATCA 59.795 38.462 11.83 8.49 0.00 2.57
3564 4049 6.413892 TGTATGGTGCTGTCAAATATGAAGA 58.586 36.000 0.00 0.00 37.30 2.87
3566 4051 5.164620 TGGTGCTGTCAAATATGAAGAGA 57.835 39.130 0.00 0.00 37.30 3.10
3576 4061 2.988010 TATGAAGAGAGCACGGCAAT 57.012 45.000 0.00 0.00 0.00 3.56
3578 4063 2.760634 TGAAGAGAGCACGGCAATAA 57.239 45.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.926207 CGGACTAAAACCCTCCGG 57.074 61.111 0.00 0.00 42.76 5.14
2 3 2.460669 TCCTACGGACTAAAACCCTCC 58.539 52.381 0.00 0.00 0.00 4.30
14 15 3.764972 TGATGTGTATGTTGTCCTACGGA 59.235 43.478 0.00 0.00 0.00 4.69
15 16 4.118093 TGATGTGTATGTTGTCCTACGG 57.882 45.455 0.00 0.00 0.00 4.02
16 17 4.926832 TGTTGATGTGTATGTTGTCCTACG 59.073 41.667 0.00 0.00 0.00 3.51
17 18 6.795098 TTGTTGATGTGTATGTTGTCCTAC 57.205 37.500 0.00 0.00 0.00 3.18
18 19 7.164803 TGATTGTTGATGTGTATGTTGTCCTA 58.835 34.615 0.00 0.00 0.00 2.94
19 20 6.003326 TGATTGTTGATGTGTATGTTGTCCT 58.997 36.000 0.00 0.00 0.00 3.85
20 21 6.252967 TGATTGTTGATGTGTATGTTGTCC 57.747 37.500 0.00 0.00 0.00 4.02
21 22 7.910162 GGTATGATTGTTGATGTGTATGTTGTC 59.090 37.037 0.00 0.00 0.00 3.18
22 23 7.392953 TGGTATGATTGTTGATGTGTATGTTGT 59.607 33.333 0.00 0.00 0.00 3.32
23 24 7.760437 TGGTATGATTGTTGATGTGTATGTTG 58.240 34.615 0.00 0.00 0.00 3.33
24 25 7.936496 TGGTATGATTGTTGATGTGTATGTT 57.064 32.000 0.00 0.00 0.00 2.71
25 26 9.276590 CTATGGTATGATTGTTGATGTGTATGT 57.723 33.333 0.00 0.00 0.00 2.29
26 27 8.724229 CCTATGGTATGATTGTTGATGTGTATG 58.276 37.037 0.00 0.00 0.00 2.39
27 28 7.391554 GCCTATGGTATGATTGTTGATGTGTAT 59.608 37.037 0.00 0.00 0.00 2.29
28 29 6.710295 GCCTATGGTATGATTGTTGATGTGTA 59.290 38.462 0.00 0.00 0.00 2.90
29 30 5.532406 GCCTATGGTATGATTGTTGATGTGT 59.468 40.000 0.00 0.00 0.00 3.72
30 31 5.766670 AGCCTATGGTATGATTGTTGATGTG 59.233 40.000 0.00 0.00 0.00 3.21
31 32 5.945310 AGCCTATGGTATGATTGTTGATGT 58.055 37.500 0.00 0.00 0.00 3.06
32 33 6.093219 GCTAGCCTATGGTATGATTGTTGATG 59.907 42.308 2.29 0.00 0.00 3.07
33 34 6.013032 AGCTAGCCTATGGTATGATTGTTGAT 60.013 38.462 12.13 0.00 0.00 2.57
34 35 5.307976 AGCTAGCCTATGGTATGATTGTTGA 59.692 40.000 12.13 0.00 0.00 3.18
35 36 5.555017 AGCTAGCCTATGGTATGATTGTTG 58.445 41.667 12.13 0.00 0.00 3.33
36 37 5.832539 AGCTAGCCTATGGTATGATTGTT 57.167 39.130 12.13 0.00 0.00 2.83
37 38 5.545723 AGAAGCTAGCCTATGGTATGATTGT 59.454 40.000 12.13 0.00 0.00 2.71
38 39 6.047511 AGAAGCTAGCCTATGGTATGATTG 57.952 41.667 12.13 0.00 0.00 2.67
39 40 6.382570 CCTAGAAGCTAGCCTATGGTATGATT 59.617 42.308 12.13 0.00 0.00 2.57
40 41 5.896678 CCTAGAAGCTAGCCTATGGTATGAT 59.103 44.000 12.13 0.00 0.00 2.45
41 42 5.265191 CCTAGAAGCTAGCCTATGGTATGA 58.735 45.833 12.13 0.00 0.00 2.15
42 43 4.404073 CCCTAGAAGCTAGCCTATGGTATG 59.596 50.000 12.13 0.00 0.00 2.39
43 44 4.046103 ACCCTAGAAGCTAGCCTATGGTAT 59.954 45.833 19.36 4.05 33.87 2.73
44 45 3.401683 ACCCTAGAAGCTAGCCTATGGTA 59.598 47.826 19.36 2.73 33.87 3.25
45 46 2.180308 ACCCTAGAAGCTAGCCTATGGT 59.820 50.000 12.13 15.16 31.76 3.55
46 47 2.896039 ACCCTAGAAGCTAGCCTATGG 58.104 52.381 12.13 14.55 0.00 2.74
47 48 4.965200 AAACCCTAGAAGCTAGCCTATG 57.035 45.455 12.13 3.90 0.00 2.23
48 49 4.528987 GCTAAACCCTAGAAGCTAGCCTAT 59.471 45.833 12.13 0.00 32.18 2.57
49 50 3.896272 GCTAAACCCTAGAAGCTAGCCTA 59.104 47.826 12.13 5.82 32.18 3.93
50 51 2.701423 GCTAAACCCTAGAAGCTAGCCT 59.299 50.000 12.13 4.79 32.18 4.58
51 52 2.224329 GGCTAAACCCTAGAAGCTAGCC 60.224 54.545 12.13 13.65 43.27 3.93
52 53 2.701423 AGGCTAAACCCTAGAAGCTAGC 59.299 50.000 6.62 6.62 40.58 3.42
53 54 3.322541 GGAGGCTAAACCCTAGAAGCTAG 59.677 52.174 0.00 0.00 40.58 3.42
54 55 3.052033 AGGAGGCTAAACCCTAGAAGCTA 60.052 47.826 0.00 0.00 40.58 3.32
55 56 2.120312 GGAGGCTAAACCCTAGAAGCT 58.880 52.381 0.00 0.00 40.58 3.74
56 57 2.103432 GAGGAGGCTAAACCCTAGAAGC 59.897 54.545 0.00 0.00 40.58 3.86
57 58 2.362717 CGAGGAGGCTAAACCCTAGAAG 59.637 54.545 0.00 0.00 40.58 2.85
58 59 2.024655 TCGAGGAGGCTAAACCCTAGAA 60.025 50.000 1.12 0.00 40.58 2.10
59 60 1.567649 TCGAGGAGGCTAAACCCTAGA 59.432 52.381 0.00 0.00 40.58 2.43
60 61 2.068834 TCGAGGAGGCTAAACCCTAG 57.931 55.000 0.00 0.00 40.58 3.02
61 62 2.177233 AGATCGAGGAGGCTAAACCCTA 59.823 50.000 0.00 0.00 40.58 3.53
62 63 1.062810 AGATCGAGGAGGCTAAACCCT 60.063 52.381 0.00 0.00 40.58 4.34
63 64 1.341852 GAGATCGAGGAGGCTAAACCC 59.658 57.143 0.00 0.00 40.58 4.11
64 65 1.001158 CGAGATCGAGGAGGCTAAACC 60.001 57.143 0.00 0.00 43.02 3.27
65 66 1.677052 ACGAGATCGAGGAGGCTAAAC 59.323 52.381 9.58 0.00 43.02 2.01
66 67 1.676529 CACGAGATCGAGGAGGCTAAA 59.323 52.381 9.58 0.00 43.02 1.85
67 68 1.309950 CACGAGATCGAGGAGGCTAA 58.690 55.000 9.58 0.00 43.02 3.09
68 69 3.008141 CACGAGATCGAGGAGGCTA 57.992 57.895 9.58 0.00 43.02 3.93
69 70 3.834726 CACGAGATCGAGGAGGCT 58.165 61.111 9.58 0.00 43.02 4.58
79 80 6.182507 AGAAGAGTAGATCTACCACGAGAT 57.817 41.667 25.93 8.56 37.23 2.75
80 81 5.617528 AGAAGAGTAGATCTACCACGAGA 57.382 43.478 25.93 0.00 37.23 4.04
81 82 6.518493 AGTAGAAGAGTAGATCTACCACGAG 58.482 44.000 25.93 0.00 45.90 4.18
82 83 6.482898 AGTAGAAGAGTAGATCTACCACGA 57.517 41.667 25.93 10.77 45.90 4.35
83 84 6.646240 GGTAGTAGAAGAGTAGATCTACCACG 59.354 46.154 25.93 0.00 45.90 4.94
84 85 6.936335 GGGTAGTAGAAGAGTAGATCTACCAC 59.064 46.154 25.93 20.17 45.90 4.16
85 86 6.618610 TGGGTAGTAGAAGAGTAGATCTACCA 59.381 42.308 25.93 11.57 45.90 3.25
86 87 7.077050 TGGGTAGTAGAAGAGTAGATCTACC 57.923 44.000 25.93 18.03 45.90 3.18
89 90 9.118367 TGATATGGGTAGTAGAAGAGTAGATCT 57.882 37.037 0.00 0.00 41.27 2.75
90 91 9.914834 ATGATATGGGTAGTAGAAGAGTAGATC 57.085 37.037 0.00 0.00 0.00 2.75
91 92 9.914834 GATGATATGGGTAGTAGAAGAGTAGAT 57.085 37.037 0.00 0.00 0.00 1.98
92 93 8.891501 TGATGATATGGGTAGTAGAAGAGTAGA 58.108 37.037 0.00 0.00 0.00 2.59
93 94 9.521841 TTGATGATATGGGTAGTAGAAGAGTAG 57.478 37.037 0.00 0.00 0.00 2.57
95 96 8.964533 ATTGATGATATGGGTAGTAGAAGAGT 57.035 34.615 0.00 0.00 0.00 3.24
106 107 9.758021 TGCTTGATTAATATTGATGATATGGGT 57.242 29.630 0.00 0.00 31.27 4.51
111 112 9.154847 CGTCCTGCTTGATTAATATTGATGATA 57.845 33.333 0.00 0.00 0.00 2.15
112 113 7.663081 ACGTCCTGCTTGATTAATATTGATGAT 59.337 33.333 0.00 0.00 0.00 2.45
113 114 6.992123 ACGTCCTGCTTGATTAATATTGATGA 59.008 34.615 0.00 0.00 0.00 2.92
114 115 7.194607 ACGTCCTGCTTGATTAATATTGATG 57.805 36.000 0.00 0.00 0.00 3.07
115 116 7.604164 CCTACGTCCTGCTTGATTAATATTGAT 59.396 37.037 0.00 0.00 0.00 2.57
116 117 6.929049 CCTACGTCCTGCTTGATTAATATTGA 59.071 38.462 0.00 0.00 0.00 2.57
117 118 6.147821 CCCTACGTCCTGCTTGATTAATATTG 59.852 42.308 0.00 0.00 0.00 1.90
118 119 6.183361 ACCCTACGTCCTGCTTGATTAATATT 60.183 38.462 0.00 0.00 0.00 1.28
119 120 5.307196 ACCCTACGTCCTGCTTGATTAATAT 59.693 40.000 0.00 0.00 0.00 1.28
120 121 4.652421 ACCCTACGTCCTGCTTGATTAATA 59.348 41.667 0.00 0.00 0.00 0.98
121 122 3.454812 ACCCTACGTCCTGCTTGATTAAT 59.545 43.478 0.00 0.00 0.00 1.40
122 123 2.835764 ACCCTACGTCCTGCTTGATTAA 59.164 45.455 0.00 0.00 0.00 1.40
123 124 2.463752 ACCCTACGTCCTGCTTGATTA 58.536 47.619 0.00 0.00 0.00 1.75
124 125 1.276622 ACCCTACGTCCTGCTTGATT 58.723 50.000 0.00 0.00 0.00 2.57
125 126 1.276622 AACCCTACGTCCTGCTTGAT 58.723 50.000 0.00 0.00 0.00 2.57
126 127 1.053424 AAACCCTACGTCCTGCTTGA 58.947 50.000 0.00 0.00 0.00 3.02
127 128 1.892209 AAAACCCTACGTCCTGCTTG 58.108 50.000 0.00 0.00 0.00 4.01
128 129 2.289882 GGTAAAACCCTACGTCCTGCTT 60.290 50.000 0.00 0.00 30.04 3.91
129 130 1.277273 GGTAAAACCCTACGTCCTGCT 59.723 52.381 0.00 0.00 30.04 4.24
130 131 1.277273 AGGTAAAACCCTACGTCCTGC 59.723 52.381 0.00 0.00 39.75 4.85
131 132 2.093816 GGAGGTAAAACCCTACGTCCTG 60.094 54.545 12.88 0.00 46.43 3.86
132 133 2.182827 GGAGGTAAAACCCTACGTCCT 58.817 52.381 12.88 0.00 46.43 3.85
133 134 2.680312 GGAGGTAAAACCCTACGTCC 57.320 55.000 0.00 6.71 44.94 4.79
134 135 3.736126 CGATGGAGGTAAAACCCTACGTC 60.736 52.174 0.00 2.12 44.89 4.34
135 136 2.167075 CGATGGAGGTAAAACCCTACGT 59.833 50.000 0.00 0.00 38.41 3.57
136 137 2.428171 TCGATGGAGGTAAAACCCTACG 59.572 50.000 0.00 0.00 38.41 3.51
137 138 3.703052 TCTCGATGGAGGTAAAACCCTAC 59.297 47.826 4.78 0.00 39.75 3.18
138 139 3.958798 CTCTCGATGGAGGTAAAACCCTA 59.041 47.826 4.78 0.00 39.75 3.53
139 140 2.766828 CTCTCGATGGAGGTAAAACCCT 59.233 50.000 4.78 0.00 39.75 4.34
140 141 2.158943 CCTCTCGATGGAGGTAAAACCC 60.159 54.545 11.66 0.00 45.65 4.11
141 142 3.180891 CCTCTCGATGGAGGTAAAACC 57.819 52.381 11.66 0.00 45.65 3.27
149 150 3.610669 CGGGCCCTCTCGATGGAG 61.611 72.222 22.43 0.00 41.89 3.86
150 151 3.672338 TTCGGGCCCTCTCGATGGA 62.672 63.158 22.43 3.53 35.25 3.41
151 152 3.154473 TTCGGGCCCTCTCGATGG 61.154 66.667 22.43 0.54 35.25 3.51
152 153 2.107141 GTTCGGGCCCTCTCGATG 59.893 66.667 22.43 1.43 35.25 3.84
153 154 3.155167 GGTTCGGGCCCTCTCGAT 61.155 66.667 22.43 0.00 35.25 3.59
154 155 4.377760 AGGTTCGGGCCCTCTCGA 62.378 66.667 22.43 9.26 0.00 4.04
155 156 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
156 157 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
164 165 1.802365 CGAAGTTTTACCCAGGTTCGG 59.198 52.381 0.00 0.00 34.57 4.30
165 166 2.222445 CACGAAGTTTTACCCAGGTTCG 59.778 50.000 0.00 0.00 41.61 3.95
166 167 3.208594 ACACGAAGTTTTACCCAGGTTC 58.791 45.455 0.00 0.00 41.61 3.62
167 168 3.208594 GACACGAAGTTTTACCCAGGTT 58.791 45.455 0.00 0.00 41.61 3.50
168 169 2.486013 GGACACGAAGTTTTACCCAGGT 60.486 50.000 0.00 0.00 41.61 4.00
169 170 2.148768 GGACACGAAGTTTTACCCAGG 58.851 52.381 0.00 0.00 41.61 4.45
170 171 2.148768 GGGACACGAAGTTTTACCCAG 58.851 52.381 0.00 0.00 41.61 4.45
171 172 1.770061 AGGGACACGAAGTTTTACCCA 59.230 47.619 0.00 0.00 41.61 4.51
172 173 2.551032 CAAGGGACACGAAGTTTTACCC 59.449 50.000 0.00 0.00 41.61 3.69
173 174 3.208594 ACAAGGGACACGAAGTTTTACC 58.791 45.455 0.00 0.00 41.61 2.85
174 175 4.124970 AGACAAGGGACACGAAGTTTTAC 58.875 43.478 0.00 0.00 41.61 2.01
175 176 4.374399 GAGACAAGGGACACGAAGTTTTA 58.626 43.478 0.00 0.00 41.61 1.52
176 177 3.203716 GAGACAAGGGACACGAAGTTTT 58.796 45.455 0.00 0.00 41.61 2.43
177 178 2.484947 GGAGACAAGGGACACGAAGTTT 60.485 50.000 0.00 0.00 41.61 2.66
178 179 1.070289 GGAGACAAGGGACACGAAGTT 59.930 52.381 0.00 0.00 41.61 2.66
180 181 0.969894 AGGAGACAAGGGACACGAAG 59.030 55.000 0.00 0.00 0.00 3.79
181 182 0.679505 CAGGAGACAAGGGACACGAA 59.320 55.000 0.00 0.00 0.00 3.85
182 183 0.469331 ACAGGAGACAAGGGACACGA 60.469 55.000 0.00 0.00 0.00 4.35
183 184 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
184 185 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
185 186 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
186 187 1.975680 TGGTAACAGGAGACAAGGGAC 59.024 52.381 0.00 0.00 46.17 4.46
187 188 2.409064 TGGTAACAGGAGACAAGGGA 57.591 50.000 0.00 0.00 46.17 4.20
200 201 0.031721 CGTCTAGGCCGGATGGTAAC 59.968 60.000 5.05 0.00 37.67 2.50
201 202 1.741327 GCGTCTAGGCCGGATGGTAA 61.741 60.000 5.05 0.00 37.67 2.85
202 203 2.198287 GCGTCTAGGCCGGATGGTA 61.198 63.158 5.05 0.00 37.67 3.25
203 204 3.537874 GCGTCTAGGCCGGATGGT 61.538 66.667 5.05 0.00 37.67 3.55
204 205 3.536917 TGCGTCTAGGCCGGATGG 61.537 66.667 5.05 0.00 38.77 3.51
205 206 2.279517 GTGCGTCTAGGCCGGATG 60.280 66.667 5.05 14.10 0.00 3.51
206 207 2.758327 TGTGCGTCTAGGCCGGAT 60.758 61.111 5.05 0.00 0.00 4.18
207 208 3.449227 CTGTGCGTCTAGGCCGGA 61.449 66.667 5.05 0.00 0.00 5.14
208 209 3.296709 AACTGTGCGTCTAGGCCGG 62.297 63.158 0.00 0.00 0.00 6.13
209 210 1.805945 GAACTGTGCGTCTAGGCCG 60.806 63.158 0.00 0.00 0.00 6.13
210 211 1.805945 CGAACTGTGCGTCTAGGCC 60.806 63.158 0.00 0.00 0.00 5.19
211 212 1.805945 CCGAACTGTGCGTCTAGGC 60.806 63.158 7.51 0.00 0.00 3.93
212 213 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
213 214 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
214 215 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
215 216 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
216 217 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
217 218 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
219 220 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
222 223 2.817420 AGGTAGGGGGTCCCGAACTG 62.817 65.000 0.48 0.00 44.62 3.16
228 229 0.472161 GATCTCAGGTAGGGGGTCCC 60.472 65.000 0.00 0.00 45.90 4.46
229 230 0.472161 GGATCTCAGGTAGGGGGTCC 60.472 65.000 0.00 0.00 0.00 4.46
230 231 0.828343 CGGATCTCAGGTAGGGGGTC 60.828 65.000 0.00 0.00 0.00 4.46
231 232 1.233369 CGGATCTCAGGTAGGGGGT 59.767 63.158 0.00 0.00 0.00 4.95
232 233 2.210711 GCGGATCTCAGGTAGGGGG 61.211 68.421 0.00 0.00 0.00 5.40
233 234 2.210711 GGCGGATCTCAGGTAGGGG 61.211 68.421 0.00 0.00 0.00 4.79
234 235 2.565645 CGGCGGATCTCAGGTAGGG 61.566 68.421 0.00 0.00 0.00 3.53
235 236 2.565645 CCGGCGGATCTCAGGTAGG 61.566 68.421 24.41 0.00 0.00 3.18
236 237 1.392710 AACCGGCGGATCTCAGGTAG 61.393 60.000 35.78 0.55 34.35 3.18
237 238 0.974010 AAACCGGCGGATCTCAGGTA 60.974 55.000 35.78 0.00 34.35 3.08
238 239 1.838073 AAAACCGGCGGATCTCAGGT 61.838 55.000 35.78 3.72 36.66 4.00
239 240 1.078426 AAAACCGGCGGATCTCAGG 60.078 57.895 35.78 2.92 0.00 3.86
240 241 0.391130 TCAAAACCGGCGGATCTCAG 60.391 55.000 35.78 16.46 0.00 3.35
241 242 0.672401 GTCAAAACCGGCGGATCTCA 60.672 55.000 35.78 10.41 0.00 3.27
242 243 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
243 244 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
244 245 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
245 246 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
246 247 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
247 248 2.482333 TTGGTGTCAAAACCGGCGG 61.482 57.895 27.06 27.06 43.73 6.13
248 249 1.298788 GTTGGTGTCAAAACCGGCG 60.299 57.895 0.00 0.00 43.73 6.46
249 250 0.173708 TTGTTGGTGTCAAAACCGGC 59.826 50.000 0.00 0.00 43.73 6.13
250 251 2.656560 TTTGTTGGTGTCAAAACCGG 57.343 45.000 0.00 0.00 43.73 5.28
251 252 3.181525 GCTTTTTGTTGGTGTCAAAACCG 60.182 43.478 3.80 1.19 43.73 4.44
252 253 3.748568 TGCTTTTTGTTGGTGTCAAAACC 59.251 39.130 3.80 0.00 42.07 3.27
253 254 4.999751 TGCTTTTTGTTGGTGTCAAAAC 57.000 36.364 3.80 0.00 42.07 2.43
254 255 6.205464 TGAAATGCTTTTTGTTGGTGTCAAAA 59.795 30.769 0.00 0.00 41.13 2.44
255 256 5.702670 TGAAATGCTTTTTGTTGGTGTCAAA 59.297 32.000 0.00 0.00 34.28 2.69
256 257 5.240891 TGAAATGCTTTTTGTTGGTGTCAA 58.759 33.333 0.00 0.00 0.00 3.18
257 258 4.825422 TGAAATGCTTTTTGTTGGTGTCA 58.175 34.783 0.00 0.00 0.00 3.58
258 259 5.121454 TGTTGAAATGCTTTTTGTTGGTGTC 59.879 36.000 0.00 0.00 0.00 3.67
259 260 4.999950 TGTTGAAATGCTTTTTGTTGGTGT 59.000 33.333 0.00 0.00 0.00 4.16
260 261 5.542616 TGTTGAAATGCTTTTTGTTGGTG 57.457 34.783 0.00 0.00 0.00 4.17
261 262 5.647225 ACATGTTGAAATGCTTTTTGTTGGT 59.353 32.000 0.00 0.00 0.00 3.67
262 263 5.966503 CACATGTTGAAATGCTTTTTGTTGG 59.033 36.000 0.00 0.00 0.00 3.77
263 264 6.773080 TCACATGTTGAAATGCTTTTTGTTG 58.227 32.000 0.00 0.00 0.00 3.33
264 265 6.981762 TCACATGTTGAAATGCTTTTTGTT 57.018 29.167 0.00 0.00 0.00 2.83
265 266 6.987992 AGATCACATGTTGAAATGCTTTTTGT 59.012 30.769 0.00 0.00 37.92 2.83
266 267 7.416154 AGATCACATGTTGAAATGCTTTTTG 57.584 32.000 0.00 0.00 37.92 2.44
267 268 9.715121 ATTAGATCACATGTTGAAATGCTTTTT 57.285 25.926 0.00 0.00 37.92 1.94
331 332 3.063045 CCGCGAGTCTAAATTACAAACCC 59.937 47.826 8.23 0.00 0.00 4.11
403 404 3.096092 GTGAGGGATGTTAAATTGGCCA 58.904 45.455 0.00 0.00 0.00 5.36
405 406 2.479560 GCGTGAGGGATGTTAAATTGGC 60.480 50.000 0.00 0.00 0.00 4.52
423 424 1.792949 GAGAGTTTCACATTCACGCGT 59.207 47.619 5.58 5.58 0.00 6.01
444 445 1.378531 GCATCACTTGTCGGGCATTA 58.621 50.000 0.00 0.00 0.00 1.90
445 446 1.315257 GGCATCACTTGTCGGGCATT 61.315 55.000 0.00 0.00 0.00 3.56
492 493 6.930731 ACAACAAGTTGGTTCACAAATACTT 58.069 32.000 16.45 0.00 44.45 2.24
506 507 5.127491 TCCTAACCACCTAACAACAAGTTG 58.873 41.667 11.16 11.16 45.58 3.16
508 509 4.202430 CCTCCTAACCACCTAACAACAAGT 60.202 45.833 0.00 0.00 0.00 3.16
509 510 4.041198 TCCTCCTAACCACCTAACAACAAG 59.959 45.833 0.00 0.00 0.00 3.16
510 511 3.975312 TCCTCCTAACCACCTAACAACAA 59.025 43.478 0.00 0.00 0.00 2.83
511 512 3.589641 TCCTCCTAACCACCTAACAACA 58.410 45.455 0.00 0.00 0.00 3.33
512 513 4.838904 ATCCTCCTAACCACCTAACAAC 57.161 45.455 0.00 0.00 0.00 3.32
513 514 5.424252 CACTATCCTCCTAACCACCTAACAA 59.576 44.000 0.00 0.00 0.00 2.83
514 515 4.960469 CACTATCCTCCTAACCACCTAACA 59.040 45.833 0.00 0.00 0.00 2.41
515 516 4.344390 CCACTATCCTCCTAACCACCTAAC 59.656 50.000 0.00 0.00 0.00 2.34
516 517 4.015918 ACCACTATCCTCCTAACCACCTAA 60.016 45.833 0.00 0.00 0.00 2.69
517 518 3.534747 ACCACTATCCTCCTAACCACCTA 59.465 47.826 0.00 0.00 0.00 3.08
518 519 2.318207 ACCACTATCCTCCTAACCACCT 59.682 50.000 0.00 0.00 0.00 4.00
519 520 2.760581 ACCACTATCCTCCTAACCACC 58.239 52.381 0.00 0.00 0.00 4.61
520 521 5.395611 AGATACCACTATCCTCCTAACCAC 58.604 45.833 0.00 0.00 30.40 4.16
528 529 5.141182 TGGACTGAAGATACCACTATCCTC 58.859 45.833 0.00 0.00 30.40 3.71
533 534 5.766590 TCTGATGGACTGAAGATACCACTA 58.233 41.667 0.00 0.00 35.19 2.74
560 561 8.721478 GAGCATCAATGTCAAGTTTAGAACTTA 58.279 33.333 5.81 0.00 42.06 2.24
565 566 4.093408 GCGAGCATCAATGTCAAGTTTAGA 59.907 41.667 0.00 0.00 33.17 2.10
569 570 2.153645 TGCGAGCATCAATGTCAAGTT 58.846 42.857 0.00 0.00 33.17 2.66
581 582 9.455847 GAAATAAATCTAGAAAAATGCGAGCAT 57.544 29.630 4.52 4.52 38.46 3.79
597 598 4.510038 GCGGATGGCATGAAATAAATCT 57.490 40.909 3.81 0.00 42.87 2.40
618 619 0.744414 CCCCCACTGAACGCACATAG 60.744 60.000 0.00 0.00 0.00 2.23
619 620 1.195442 TCCCCCACTGAACGCACATA 61.195 55.000 0.00 0.00 0.00 2.29
649 651 3.320673 AGTCAACGGGAATGTCTTCTC 57.679 47.619 0.00 0.00 0.00 2.87
650 652 4.189639 GTAGTCAACGGGAATGTCTTCT 57.810 45.455 0.00 0.00 0.00 2.85
695 697 9.208022 CTGAGTCGGCATATCATCTTAAAATTA 57.792 33.333 0.00 0.00 0.00 1.40
701 703 5.073428 AGACTGAGTCGGCATATCATCTTA 58.927 41.667 6.99 0.00 37.67 2.10
704 706 3.932545 AGACTGAGTCGGCATATCATC 57.067 47.619 6.99 0.00 37.67 2.92
707 709 3.557595 CCAAAAGACTGAGTCGGCATATC 59.442 47.826 6.99 0.00 37.67 1.63
710 712 1.347707 TCCAAAAGACTGAGTCGGCAT 59.652 47.619 6.99 0.00 37.67 4.40
713 715 2.802816 CACTTCCAAAAGACTGAGTCGG 59.197 50.000 6.99 2.39 37.67 4.79
716 718 3.135530 AGAGCACTTCCAAAAGACTGAGT 59.864 43.478 0.00 0.00 36.30 3.41
723 725 2.555325 TCATGCAGAGCACTTCCAAAAG 59.445 45.455 0.00 0.00 43.04 2.27
727 729 3.545724 CTCATGCAGAGCACTTCCA 57.454 52.632 0.00 0.00 43.04 3.53
765 767 6.787085 ACTCGAAATTCTCTCGTGATTTTT 57.213 33.333 6.99 0.00 37.56 1.94
766 768 7.884816 TTACTCGAAATTCTCTCGTGATTTT 57.115 32.000 6.99 0.00 37.56 1.82
767 769 7.759886 TCATTACTCGAAATTCTCTCGTGATTT 59.240 33.333 6.99 0.00 37.56 2.17
784 786 4.857871 TCCGAATTTTGCTCATTACTCG 57.142 40.909 0.00 0.00 0.00 4.18
823 825 0.609131 AACGACTTTCCATGGGCCTG 60.609 55.000 13.02 0.00 0.00 4.85
934 939 4.207165 TCGAATTGGGGATGGATCTTTTC 58.793 43.478 0.00 0.00 0.00 2.29
1224 1229 2.100603 GAGTCGAGGCCGAGAACG 59.899 66.667 4.77 4.20 46.52 3.95
1923 2402 0.890542 GCAATGTGCCAGACTCCACA 60.891 55.000 7.67 7.67 45.01 4.17
1945 2424 0.388134 AATGTCCAGAACGTCGACGG 60.388 55.000 37.89 21.82 44.95 4.79
2310 2789 4.451150 TCCACTCCCGTGCGCATC 62.451 66.667 15.91 6.64 39.86 3.91
2567 3046 3.609103 ATCAAGTCACAACTCGCAAAC 57.391 42.857 0.00 0.00 33.48 2.93
2818 3297 7.205297 ACATCATCTAAAGCATAAATGGCAAC 58.795 34.615 0.00 0.00 0.00 4.17
2947 3426 3.181498 TGTCCGATTATTGCAGCACATTG 60.181 43.478 0.00 0.00 0.00 2.82
2998 3477 1.921887 CAACACAGCTTGCACAAACTG 59.078 47.619 11.28 11.28 36.22 3.16
3092 3571 5.699143 TCTAGGTAAGTAGGTACCATGTCC 58.301 45.833 15.94 8.53 45.27 4.02
3172 3651 3.953612 TCAAAGATGAACCACTTGCAGTT 59.046 39.130 0.00 0.00 30.99 3.16
3197 3676 7.871973 TCAAAGACCCAAACAATAACATGAATG 59.128 33.333 0.00 0.00 0.00 2.67
3209 3688 5.395103 CCAATTCAGTTCAAAGACCCAAACA 60.395 40.000 0.00 0.00 0.00 2.83
3212 3691 3.640967 CCCAATTCAGTTCAAAGACCCAA 59.359 43.478 0.00 0.00 0.00 4.12
3213 3692 3.230134 CCCAATTCAGTTCAAAGACCCA 58.770 45.455 0.00 0.00 0.00 4.51
3326 3806 6.127897 GCCAACCAATTCATATATAGCCACTC 60.128 42.308 0.00 0.00 0.00 3.51
3362 3843 5.936372 CCAATTCAGTTCAGAGACAATCAGA 59.064 40.000 0.00 0.00 0.00 3.27
3388 3869 0.400213 CCCAGGTACAGTTCAGCCAA 59.600 55.000 0.00 0.00 0.00 4.52
3472 3953 6.409524 AATTCACCATAACATAGCCAATGG 57.590 37.500 0.00 0.00 43.73 3.16
3483 3964 5.276868 CGGTCTGATTCGAATTCACCATAAC 60.277 44.000 23.37 13.72 0.00 1.89
3502 3987 0.888619 TTCAGCGAGAATCACGGTCT 59.111 50.000 1.23 0.00 39.38 3.85
3564 4049 4.236935 CAAAAATGTTATTGCCGTGCTCT 58.763 39.130 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.